AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073428


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073428.t1 MTR_2g437910 98.080 625 11 1 1 625 1 624 0.0 1276
MS.gene073428.t1 MTR_1g106940 63.894 601 209 3 21 614 26 625 0.0 832
MS.gene073428.t1 MTR_5g005100 63.175 611 215 6 6 612 9 613 0.0 818
MS.gene073428.t1 MTR_8g005800 59.076 628 240 5 1 615 1 624 0.0 789
MS.gene073428.t1 MTR_7g073350 61.139 597 225 4 21 613 22 615 0.0 779
MS.gene073428.t1 MTR_1g106940 65.517 493 166 2 21 510 26 517 0.0 705
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073428.t1 AT1G30900 70.048 621 183 2 2 622 6 623 0.0 944
MS.gene073428.t1 AT4G20110 68.882 617 188 3 5 620 10 623 0.0 933
MS.gene073428.t1 AT4G20110 67.949 624 191 5 2 620 7 626 0.0 921
MS.gene073428.t1 AT2G34940 61.779 607 226 4 5 610 10 611 0.0 825
MS.gene073428.t1 AT2G14720 63.500 600 213 4 18 612 21 619 0.0 822
MS.gene073428.t1 AT2G14720 63.500 600 213 4 18 612 21 619 0.0 822
MS.gene073428.t1 AT2G14740 63.317 597 213 4 21 612 24 619 0.0 821
MS.gene073428.t1 AT2G14740 63.317 597 213 4 21 612 24 619 0.0 821
MS.gene073428.t1 AT3G52850 62.007 608 225 4 8 609 5 612 0.0 790
MS.gene073428.t1 AT2G30290 57.605 618 255 4 1 612 1 617 0.0 781
MS.gene073428.t1 AT2G30290 57.605 618 255 4 1 612 1 617 0.0 780

Find 129 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGCATGCCATACCTTTA+AGG 0.157221 2.4:+53865247 None:intergenic
GAAAGAAGTGGTTCAAAATT+TGG 0.164004 2.4:-53861962 MS.gene073428:CDS
ACAATATACCCTCCATAATT+TGG 0.203127 2.4:+53866431 None:intergenic
GGCTATATGTGCTGGATTTA+AGG 0.203205 2.4:-53863867 MS.gene073428:CDS
AACTTTGGTATTCCAAATTA+TGG 0.212484 2.4:-53866443 MS.gene073428:CDS
TCATATTCCACTCGATTATC+AGG 0.227038 2.4:+53865005 None:intergenic
TGATTTGTCTAAAGGAAAAT+TGG 0.265770 2.4:-53863909 MS.gene073428:intron
CACTGACTGCTTTCAACAAA+TGG 0.295544 2.4:+53864834 None:intergenic
CTGCTTTCAACAAATGGCTT+TGG 0.319275 2.4:+53864840 None:intergenic
AGAGTGTTATTTCGCCTTAA+AGG 0.323181 2.4:-53865261 MS.gene073428:CDS
TTCAGCATCTTTGCTTTCCT+CGG 0.331417 2.4:+53865157 None:intergenic
TTATTTGTCAGGATACTTTC+CGG 0.332886 2.4:-53863087 MS.gene073428:intron
CAAAACCAATGTTGGCAAAA+TGG 0.338454 2.4:+53864207 None:intergenic
CACTGTCCAGTTGGATTTCA+CGG 0.347022 2.4:-53862337 MS.gene073428:CDS
TCATTCTCCACATCAGCTTC+AGG 0.349453 2.4:+53864437 None:intergenic
ATAAAGGAATCCAAGGTAAA+TGG 0.350972 2.4:-53862364 MS.gene073428:intron
AGAGTGGCCGTTCGTGGGTT+TGG 0.359998 2.4:-53864680 MS.gene073428:CDS
TTGTTTAAAGAACATCTTGC+TGG 0.381896 2.4:+53862844 None:intergenic
ATCGAGTGGAATATGAGTTC+TGG 0.384999 2.4:-53864998 MS.gene073428:CDS
CTTCATAGCAGCTATGTTCA+AGG 0.389548 2.4:-53866545 MS.gene073428:CDS
TATTTGTCAGGATACTTTCC+GGG 0.390669 2.4:-53863086 MS.gene073428:intron
GAAGTTGTCATGAAATCATT+AGG 0.394627 2.4:-53864588 MS.gene073428:intron
CATGGTTGTCAAGTCTTTGA+AGG 0.396498 2.4:-53866377 MS.gene073428:CDS
TGATGAGTCACTGATAACTA+TGG 0.408160 2.4:-53865186 MS.gene073428:CDS
GAAGTAACTAACCTCTATAC+TGG 0.412577 2.4:+53864176 None:intergenic
ATAGCAGTTGTTGTGGGAGC+TGG 0.417748 2.4:-53861917 MS.gene073428:CDS
TGGAAAGGTCATTGCCTTTG+TGG 0.430461 2.4:-53861942 MS.gene073428:CDS
GGAGAGAACATCTGTCTTGA+AGG 0.450883 2.4:-53863888 MS.gene073428:CDS
TACTGAACACCTTTCACAAT+AGG 0.450899 2.4:+53863046 None:intergenic
TTGAACAATGTCCAGTATAG+AGG 0.451686 2.4:-53864187 MS.gene073428:intron
TACACATTGCCTTGTCGTAA+AGG 0.456099 2.4:+53861508 None:intergenic
TTGAAAGAAACGGAGGATGC+TGG 0.457493 2.4:-53863257 MS.gene073428:CDS
AATTATGGAGGGTATATTGT+AGG 0.457688 2.4:-53866428 MS.gene073428:CDS
CAACCATGAGAGCCTTTCTC+AGG 0.458707 2.4:+53866392 None:intergenic
GTTATTTCGCCTTAAAGGTA+TGG 0.459481 2.4:-53865256 MS.gene073428:CDS
CCTTCAGCAAAATCCTTCTC+TGG 0.460323 2.4:+53864768 None:intergenic
CTTTAAACAATGGAGGTTGT+TGG 0.461286 2.4:-53862831 MS.gene073428:CDS
GTTGTGGGAGCTGGTCTAGC+TGG 0.461908 2.4:-53861908 MS.gene073428:CDS
CGAACGAGAGTGGCCGTTCG+TGG 0.468066 2.4:-53864686 MS.gene073428:CDS
GTATGGCATGCTCAACTAGC+TGG 0.473128 2.4:-53865239 MS.gene073428:CDS
TGGCCGTTCGTGGGTTTGGT+GGG 0.474667 2.4:-53864676 MS.gene073428:CDS
GTGGCCGTTCGTGGGTTTGG+TGG 0.475737 2.4:-53864677 MS.gene073428:CDS
CCATCTCCGTGAAATCCAAC+TGG 0.478314 2.4:+53862331 None:intergenic
AAGGAACAAGATATGTGTAT+TGG 0.478819 2.4:-53862082 MS.gene073428:intron
GTATTAGTAGAGAAATCCTT+TGG 0.486574 2.4:-53865104 MS.gene073428:CDS
TCAGCATCTTTGCTTTCCTC+GGG 0.488925 2.4:+53865158 None:intergenic
ATATAGTGTATGAGAATTTG+AGG 0.490116 2.4:-53864731 MS.gene073428:CDS
GTGGTCATAGCAGTTGTTGT+GGG 0.493592 2.4:-53861923 MS.gene073428:CDS
GATGGTGCTATAGGAAACTT+TGG 0.494854 2.4:-53866458 MS.gene073428:CDS
GTCTTGAAGGCTATATGTGC+TGG 0.496137 2.4:-53863875 MS.gene073428:CDS
GTGAAAGGTGTTCAGTATAG+AGG 0.496880 2.4:-53863040 MS.gene073428:CDS
GAGCCTCAAGTCTGTTTAAG+TGG 0.501408 2.4:-53863836 MS.gene073428:CDS
TCACTTGTTTATCCTGAGAA+AGG 0.503095 2.4:-53866404 MS.gene073428:CDS
TGCTAATGTAACTGCTTGCA+AGG 0.503266 2.4:-53863223 MS.gene073428:intron
ACTATTGTTCTTCTTGATCG+TGG 0.505839 2.4:-53866320 MS.gene073428:CDS
GATTTCTCTACTAATACTGA+TGG 0.506816 2.4:+53865110 None:intergenic
TGTTCTACAAGTATAGACTA+AGG 0.506946 2.4:-53861880 MS.gene073428:CDS
TTACATGGACTCAGAGATCA+TGG 0.510252 2.4:-53861593 MS.gene073428:CDS
GCAAAATCCTTCTCTGGATC+CGG 0.510988 2.4:+53864774 None:intergenic
CGATCAAGAAGAACAATAGT+AGG 0.511281 2.4:+53866323 None:intergenic
GCTGCAGCTGTAAGAACACT+TGG 0.511473 2.4:-53862147 MS.gene073428:CDS
CATGTATTTGCAGAAAGAAG+TGG 0.520311 2.4:-53861974 MS.gene073428:intron
TTTACTAAGAATAGATTGGA+GGG 0.522454 2.4:-53865042 MS.gene073428:CDS
TATCCTGAGAAAGGCTCTCA+TGG 0.525339 2.4:-53866395 MS.gene073428:CDS
ACATTGTTCAAAACCAATGT+TGG 0.525541 2.4:+53864199 None:intergenic
CTCAACAATGAAACCTTGCA+TGG 0.531458 2.4:-53866591 None:intergenic
GACAAAATTAAGAAATGTGT+TGG 0.536057 2.4:-53864464 MS.gene073428:CDS
CCAGTTGGATTTCACGGAGA+TGG 0.536790 2.4:-53862331 MS.gene073428:CDS
GAACGAGAGTGGCCGTTCGT+GGG 0.539483 2.4:-53864685 MS.gene073428:CDS
CTATCACCACATAAACTAAG+AGG 0.541577 2.4:-53866488 MS.gene073428:CDS
GGTGTTCAGTATAGAGGTGA+TGG 0.541704 2.4:-53863034 MS.gene073428:CDS
TGCTGAAGGATATGAAGGGA+AGG 0.544900 2.4:-53864754 MS.gene073428:CDS
AGGAGGTCTTCTATATATGA+AGG 0.544983 2.4:-53862101 MS.gene073428:CDS
TGAAAGAAACGGAGGATGCT+GGG 0.549503 2.4:-53863256 MS.gene073428:CDS
ACAGTGACAACCATTTACCT+TGG 0.554404 2.4:+53862354 None:intergenic
CAAAACCATGTTATATAGTG+TGG 0.555176 2.4:+53864864 None:intergenic
TGTGGTCATAGCAGTTGTTG+TGG 0.555649 2.4:-53861924 MS.gene073428:CDS
TCATGTTAGATGTTCCATGA+AGG 0.556536 2.4:-53864637 MS.gene073428:CDS
TTTCTGAATAAAGGAATCCA+AGG 0.556578 2.4:-53862371 MS.gene073428:intron
CGATGAGACTGAAACTTGAA+AGG 0.557716 2.4:+53866347 None:intergenic
AATGGTTGTCACTGTCCAGT+TGG 0.559053 2.4:-53862346 MS.gene073428:CDS
TTCTTTCAATGAATCACCAA+AGG 0.559078 2.4:+53865088 None:intergenic
AACGAGTGTCTTGAAAGAAA+CGG 0.560407 2.4:-53863267 MS.gene073428:CDS
TATGTCACAATACATGCCAC+TGG 0.562076 2.4:-53861566 MS.gene073428:CDS
GCAAGATGTTCTTTAAACAA+TGG 0.562595 2.4:-53862841 MS.gene073428:CDS
CTGCAGCTGTAAGAACACTT+GGG 0.564075 2.4:-53862146 MS.gene073428:CDS
CATAGAGTAGCGAACGAGAG+TGG 0.567502 2.4:-53864696 MS.gene073428:CDS
ATTATGGAGGGTATATTGTA+GGG 0.569344 2.4:-53866427 MS.gene073428:CDS
TGGTGATCCTGAAGCTGATG+TGG 0.575174 2.4:-53864444 MS.gene073428:CDS
GACACTCACAAACTCTTCCC+CGG 0.576420 2.4:+53863068 None:intergenic
ATTGCCTTGTCGTAAAGGCT+CGG 0.576661 2.4:+53861513 None:intergenic
ATTTCTCTACTAATACTGAT+GGG 0.578474 2.4:+53865111 None:intergenic
TTTGGTATTCCAAATTATGG+AGG 0.579193 2.4:-53866440 MS.gene073428:CDS
TTGGTATTCCAAATTATGGA+GGG 0.579285 2.4:-53866439 MS.gene073428:CDS
AGTTATGATTGTAAGTGCAA+AGG 0.580610 2.4:-53862121 MS.gene073428:CDS
AAGTGGTTCAAAATTTGGAA+AGG 0.581324 2.4:-53861957 MS.gene073428:CDS
GATGGTAATAATAAATGTGA+AGG 0.581927 2.4:-53862313 MS.gene073428:intron
AGATGTTCTTTAAACAATGG+AGG 0.584241 2.4:-53862838 MS.gene073428:CDS
TCCACTCGATTATCAGGGTG+AGG 0.587840 2.4:+53865011 None:intergenic
CTGTGCGCCGGATCCAGAGA+AGG 0.590426 2.4:-53864781 MS.gene073428:CDS
AAAGATTGAACAAACATCAC+AGG 0.597122 2.4:-53864408 MS.gene073428:intron
CCTCAAGTCTGTTTAAGTGG+AGG 0.598734 2.4:-53863833 MS.gene073428:intron
GCTCAGATTCTTGAGAGAGG+TGG 0.605027 2.4:-53864903 MS.gene073428:CDS
CAGATTGGAGGAGGATCTCG+TGG 0.606613 2.4:-53864238 MS.gene073428:CDS
ATTGTTCTTCTTGATCGTGG+AGG 0.607211 2.4:-53866317 MS.gene073428:intron
TGTGAGTGTCCTATTGTGAA+AGG 0.607248 2.4:-53863055 MS.gene073428:CDS
CATATTCCACTCGATTATCA+GGG 0.608794 2.4:+53865006 None:intergenic
TCACTCCACACTATATAACA+TGG 0.609817 2.4:-53864869 MS.gene073428:CDS
AATCCCACCAAACCCACGAA+CGG 0.618961 2.4:+53864673 None:intergenic
ACGAACAGCAACGACGAATG+TGG 0.619268 2.4:-53864975 MS.gene073428:CDS
TATGATTGTAAGTGCAAAGG+AGG 0.619599 2.4:-53862118 MS.gene073428:CDS
GTTCTACAAGTATAGACTAA+GGG 0.621503 2.4:-53861879 MS.gene073428:intron
GCAGTACTGAACTGAACAAG+CGG 0.622319 2.4:+53862780 None:intergenic
GATGGTTATACGACATGTGA+AGG 0.625234 2.4:-53863016 MS.gene073428:intron
GAGGAAAGCAAAGATGCTGA+AGG 0.636553 2.4:-53865155 MS.gene073428:CDS
GAATCCGAGCCTTTACGACA+AGG 0.641114 2.4:-53861517 MS.gene073428:CDS
CATGCTCAGATTCTTGAGAG+AGG 0.649472 2.4:-53864906 MS.gene073428:CDS
AAACGTGCTTGTCAATGTGA+TGG 0.649602 2.4:-53862169 MS.gene073428:CDS
ACCTCACCCTGATAATCGAG+TGG 0.649688 2.4:-53865012 MS.gene073428:CDS
ATTTGTCAGGATACTTTCCG+GGG 0.653714 2.4:-53863085 MS.gene073428:intron
GATAACTATGGATTCTCCCG+AGG 0.654495 2.4:-53865174 MS.gene073428:CDS
CCGGCGCACAGTATCTTCCG+TGG 0.661230 2.4:+53864793 None:intergenic
CCACGGAAGATACTGTGCGC+CGG 0.663423 2.4:-53864793 MS.gene073428:CDS
GTCAGCCACTAAAACTGCTG+CGG 0.668621 2.4:+53865214 None:intergenic
TGCAGCTGTAAGAACACTTG+GGG 0.674243 2.4:-53862145 MS.gene073428:CDS
CCTCCACTTAAACAGACTTG+AGG 0.689799 2.4:+53863833 None:intergenic
AAGTCTCAATGTATAAACCA+CGG 0.694947 2.4:-53864810 MS.gene073428:CDS
GAGTGTCTTGAAAGAAACGG+AGG 0.703902 2.4:-53863264 MS.gene073428:CDS
AACAACTGCTATGACCACAA+AGG 0.712302 2.4:+53861928 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGGATTTAAAAAAAAAATT+TGG + chr2.4:53862772-53862791 None:intergenic 10.0%
!!! TTTTTAATTACTGATAAAAA+TGG + chr2.4:53862470-53862489 None:intergenic 10.0%
!! AAATTTATTAATAGCATGTA+AGG + chr2.4:53863975-53863994 None:intergenic 15.0%
!! CAAAAAATAAAAACAGATAT+AGG + chr2.4:53866473-53866492 None:intergenic 15.0%
!! GAAAAGAAAAATTATAATCT+TGG + chr2.4:53866098-53866117 None:intergenic 15.0%
!! TATATCAATTAAATCCTATA+AGG + chr2.4:53862020-53862039 None:intergenic 15.0%
!!! AACTAAAACAATTTTCAAAT+GGG + chr2.4:53862608-53862627 None:intergenic 15.0%
!!! AGAGAATAATTTTTTTTGTA+GGG + chr2.4:53865415-53865434 None:intergenic 15.0%
!!! TTGAATATTGAATTATTTTG+AGG + chr2.4:53864497-53864516 None:intergenic 15.0%
!!! TTTTTTTTAAATCCAAGTTT+TGG - chr2.4:53862776-53862795 MS.gene073428:intron 15.0%
!! AAAAAAGAACTCATATTACA+TGG - chr2.4:53865622-53865641 MS.gene073428:intron 20.0%
!! ACATATAGTTGAGAATAAAT+AGG + chr2.4:53866242-53866261 None:intergenic 20.0%
!! ATAAGATACGTTAATAAGAA+CGG + chr2.4:53864137-53864156 None:intergenic 20.0%
!! ATGCTAATAAACTAATTATG+TGG + chr2.4:53866437-53866456 None:intergenic 20.0%
!! TACAAAGTTAACAAAAAAAG+TGG - chr2.4:53864559-53864578 MS.gene073428:intron 20.0%
!! TATATCTGTGAATCATATAA+AGG - chr2.4:53862218-53862237 MS.gene073428:intron 20.0%
!! TATTCACTAGACATATATAA+TGG - chr2.4:53864940-53864959 MS.gene073428:CDS 20.0%
!! TATTTATTGAACTACATTCT+TGG - chr2.4:53865670-53865689 MS.gene073428:intron 20.0%
!! TTCAATATGTATTTGATAGA+TGG - chr2.4:53863935-53863954 MS.gene073428:intron 20.0%
!!! AAGTTTTACTAAGAATAGAT+TGG - chr2.4:53863045-53863064 MS.gene073428:CDS 20.0%
!!! AATAAAATGACTAGTCTTAA+TGG - chr2.4:53862729-53862748 MS.gene073428:intron 20.0%
!!! AATAACTGCATTTAAAATCT+AGG + chr2.4:53866284-53866303 None:intergenic 20.0%
!!! AATTTTGTGAAGAATTTCAA+GGG - chr2.4:53863161-53863180 MS.gene073428:intron 20.0%
!!! ACTAAAACAATTTTCAAATG+GGG + chr2.4:53862607-53862626 None:intergenic 20.0%
!!! AGTGAATAGTAATTATGTTT+TGG + chr2.4:53864928-53864947 None:intergenic 20.0%
!!! ATTTTGTTTGATTTGTCTAA+AGG - chr2.4:53864174-53864193 MS.gene073428:intron 20.0%
!!! CAACTAAAACAATTTTCAAA+TGG + chr2.4:53862609-53862628 None:intergenic 20.0%
!!! GAGAGAATAATTTTTTTTGT+AGG + chr2.4:53865416-53865435 None:intergenic 20.0%
!!! GATTCTTTTAGTTGAAAATA+TGG - chr2.4:53864324-53864343 MS.gene073428:intron 20.0%
!!! GGAATTACAGAAAATTTTAT+AGG + chr2.4:53862334-53862353 None:intergenic 20.0%
!!! TATGTGGTTTTAACTTTTAA+TGG + chr2.4:53866421-53866440 None:intergenic 20.0%
!!! TGAACATTTTATTATTTGTC+AGG - chr2.4:53864993-53865012 MS.gene073428:CDS 20.0%
!!! TTATGTTTTGGAAGAAAAAT+TGG + chr2.4:53864916-53864935 None:intergenic 20.0%
!!! TTATTTTTTGTAGTCTTACA+TGG - chr2.4:53866483-53866502 MS.gene073428:CDS 20.0%
! AAACTGTTGTAAGCAAATAA+AGG - chr2.4:53863755-53863774 MS.gene073428:intron 25.0%
! AACTTTGGTATTCCAAATTA+TGG - chr2.4:53861648-53861667 MS.gene073428:intron 25.0%
! AAGATGATATCAAAGACTAA+CGG - chr2.4:53865540-53865559 MS.gene073428:intron 25.0%
! AATCAAAGACAAAAGAAAAG+TGG - chr2.4:53864523-53864542 MS.gene073428:intron 25.0%
! ATATAGTGTATGAGAATTTG+AGG - chr2.4:53863360-53863379 MS.gene073428:intron 25.0%
! ATTTCTCTACTAATACTGAT+GGG + chr2.4:53862983-53863002 None:intergenic 25.0%
! GACAAAATTAAGAAATGTGT+TGG - chr2.4:53863627-53863646 MS.gene073428:intron 25.0%
! GATGGTAATAATAAATGTGA+AGG - chr2.4:53865778-53865797 MS.gene073428:intron 25.0%
! GGATTTAATTGATATATCCA+TGG - chr2.4:53862024-53862043 MS.gene073428:intron 25.0%
! GTAAATATGCATTGAATATG+TGG + chr2.4:53866329-53866348 None:intergenic 25.0%
! TAACTAATCTCAGCATATAT+AGG + chr2.4:53861994-53862013 None:intergenic 25.0%
! TGTAAGATATTGAATAACCA+TGG - chr2.4:53864734-53864753 MS.gene073428:CDS 25.0%
! TTTACTAAGAATAGATTGGA+GGG - chr2.4:53863049-53863068 MS.gene073428:CDS 25.0%
! TTTATTTGCTTACAACAGTT+TGG + chr2.4:53863756-53863775 None:intergenic 25.0%
!! AGATTTTCCTTTCTGAATAA+AGG - chr2.4:53865711-53865730 MS.gene073428:intron 25.0%
!! CATTGAATATGTGGTTTTTA+GGG + chr2.4:53866320-53866339 None:intergenic 25.0%
!! CATTTCTTAATTTTGTCAAG+AGG + chr2.4:53863624-53863643 None:intergenic 25.0%
!! GAATTTTGTGAAGAATTTCA+AGG - chr2.4:53863160-53863179 MS.gene073428:intron 25.0%
!! GTGTAATATGAGTACTTTTA+TGG - chr2.4:53865382-53865401 MS.gene073428:intron 25.0%
!! TGATTTGTCTAAAGGAAAAT+TGG - chr2.4:53864182-53864201 MS.gene073428:intron 25.0%
!! TTTTACTAAGAATAGATTGG+AGG - chr2.4:53863048-53863067 MS.gene073428:CDS 25.0%
!! TTTTTACCTCTTAGTTTATG+TGG + chr2.4:53861612-53861631 None:intergenic 25.0%
!!! ATTCTTTATTTGACAGCTTT+TGG - chr2.4:53865223-53865242 MS.gene073428:CDS 25.0%
!!! TACTGACTTTATTCTTGTTT+TGG - chr2.4:53864782-53864801 MS.gene073428:CDS 25.0%
!!! TACTTTTAAAGTCACACATA+CGG - chr2.4:53862123-53862142 MS.gene073428:CDS 25.0%
!!! TTAAAGACTTTTGACTTTCA+TGG - chr2.4:53862096-53862115 MS.gene073428:CDS 25.0%
!!! TTCATCAAAATTTGATGATG+CGG - chr2.4:53865459-53865478 MS.gene073428:intron 25.0%
AAACTAAGAGGTAAAAACGA+TGG - chr2.4:53861615-53861634 MS.gene073428:intron 30.0%
AAAGATTGAACAAACATCAC+AGG - chr2.4:53863683-53863702 MS.gene073428:intron 30.0%
AACATTAAATTAGCATGTGC+AGG + chr2.4:53861889-53861908 None:intergenic 30.0%
AAGAAGGAAAACTGAAGATT+TGG + chr2.4:53865341-53865360 None:intergenic 30.0%
AAGGAACAAGATATGTGTAT+TGG - chr2.4:53866009-53866028 MS.gene073428:intron 30.0%
AAGTCTCAATGTATAAACCA+CGG - chr2.4:53863281-53863300 MS.gene073428:CDS 30.0%
AAGTGGTTCAAAATTTGGAA+AGG - chr2.4:53866134-53866153 MS.gene073428:intron 30.0%
ACAATAACAATACATGCTAG+TGG + chr2.4:53864717-53864736 None:intergenic 30.0%
ACAATATACCCTCCATAATT+TGG + chr2.4:53861663-53861682 None:intergenic 30.0%
ACATTGTTCAAAACCAATGT+TGG + chr2.4:53863895-53863914 None:intergenic 30.0%
AGATCAATTCCAATGACAAA+TGG - chr2.4:53862666-53862685 MS.gene073428:intron 30.0%
AGATGTTCTTTAAACAATGG+AGG - chr2.4:53865253-53865272 MS.gene073428:CDS 30.0%
AGGAGAAGATTTGAATTACA+GGG - chr2.4:53865563-53865582 MS.gene073428:intron 30.0%
AGTTATGATTGTAAGTGCAA+AGG - chr2.4:53865970-53865989 MS.gene073428:intron 30.0%
ATAAAGGAATCCAAGGTAAA+TGG - chr2.4:53865727-53865746 MS.gene073428:intron 30.0%
ATAATATGTTTGCTTCCAAG+AGG + chr2.4:53862646-53862665 None:intergenic 30.0%
CAAAACCATGTTATATAGTG+TGG + chr2.4:53863230-53863249 None:intergenic 30.0%
CAAGGTAACGATTGTTTAAA+CGG - chr2.4:53862048-53862067 MS.gene073428:intron 30.0%
CAATTCACAATGCTCAAAAT+AGG + chr2.4:53864373-53864392 None:intergenic 30.0%
GAAAGAAGTGGTTCAAAATT+TGG - chr2.4:53866129-53866148 MS.gene073428:intron 30.0%
GAAGTTGTCATGAAATCATT+AGG - chr2.4:53863503-53863522 MS.gene073428:intron 30.0%
GAGAATCTAAAAAAAGCTCT+AGG - chr2.4:53865587-53865606 MS.gene073428:intron 30.0%
GATTTCTCTACTAATACTGA+TGG + chr2.4:53862984-53863003 None:intergenic 30.0%
GCAAGATGTTCTTTAAACAA+TGG - chr2.4:53865250-53865269 MS.gene073428:CDS 30.0%
GGAGGAAAGGTAATAAAAAT+AGG + chr2.4:53862355-53862374 None:intergenic 30.0%
GGCTATAAAGAAATCCTATA+CGG + chr2.4:53862313-53862332 None:intergenic 30.0%
GTATTAGTAGAGAAATCCTT+TGG - chr2.4:53862987-53863006 MS.gene073428:intron 30.0%
GTTCTACAAGTATAGACTAA+GGG - chr2.4:53866212-53866231 MS.gene073428:intron 30.0%
TATCGGGATAAAAGAAAAGA+AGG + chr2.4:53865357-53865376 None:intergenic 30.0%
TCAATAAGCATTCCAAAACT+TGG + chr2.4:53862791-53862810 None:intergenic 30.0%
TCCAATCTGTAAAACACAAA+TGG + chr2.4:53863842-53863861 None:intergenic 30.0%
TGTTCTACAAGTATAGACTA+AGG - chr2.4:53866211-53866230 MS.gene073428:intron 30.0%
TTAATGGAAAAGTCACTCAA+AGG - chr2.4:53862745-53862764 MS.gene073428:intron 30.0%
TTATTTGTCAGGATACTTTC+CGG - chr2.4:53865004-53865023 MS.gene073428:CDS 30.0%
TTCTTTCAATGAATCACCAA+AGG + chr2.4:53863006-53863025 None:intergenic 30.0%
TTGGATTCCTTTATTCAGAA+AGG + chr2.4:53865721-53865740 None:intergenic 30.0%
TTGGTATTCCAAATTATGGA+GGG - chr2.4:53861652-53861671 MS.gene073428:intron 30.0%
TTGTTTAAAGAACATCTTGC+TGG + chr2.4:53865250-53865269 None:intergenic 30.0%
TTTCATATACTTCTGTCGAT+TGG - chr2.4:53863536-53863555 MS.gene073428:intron 30.0%
TTTCGCAGACAATTATCAAA+TGG - chr2.4:53862435-53862454 MS.gene073428:intron 30.0%
TTTCTGAATAAAGGAATCCA+AGG - chr2.4:53865720-53865739 MS.gene073428:intron 30.0%
TTTCTTACTCATTTCCGTAT+AGG - chr2.4:53862296-53862315 MS.gene073428:intron 30.0%
TTTGAGTAGAGTAATTCAGA+AGG + chr2.4:53865105-53865124 None:intergenic 30.0%
TTTGGTATTCCAAATTATGG+AGG - chr2.4:53861651-53861670 MS.gene073428:intron 30.0%
! AAAATGATAAGCTACTTTCC+TGG - chr2.4:53865178-53865197 MS.gene073428:CDS 30.0%
! AAACAATTTTCAAATGGGGT+TGG + chr2.4:53862603-53862622 None:intergenic 30.0%
! AATTATGGAGGGTATATTGT+AGG - chr2.4:53861663-53861682 MS.gene073428:intron 30.0%
! ATTATGGAGGGTATATTGTA+GGG - chr2.4:53861664-53861683 MS.gene073428:intron 30.0%
! ATTCCAATGACAAATGGTTT+TGG - chr2.4:53862672-53862691 MS.gene073428:intron 30.0%
! ATTTGTGTTTTACAGATTGG+AGG - chr2.4:53863841-53863860 MS.gene073428:CDS 30.0%
! ATTTTGCTGAAGGATATGAA+GGG - chr2.4:53863333-53863352 MS.gene073428:intron 30.0%
! GCATTGAATATGTGGTTTTT+AGG + chr2.4:53866321-53866340 None:intergenic 30.0%
! TCCATTTGTGTTTTACAGAT+TGG - chr2.4:53863838-53863857 MS.gene073428:CDS 30.0%
! TTCTTTTCTTTTATCCCGAT+AGG - chr2.4:53865356-53865375 MS.gene073428:intron 30.0%
! TTGTCATTTGTGTAATGTAG+TGG - chr2.4:53864063-53864082 MS.gene073428:intron 30.0%
!! CATGAACTACATTATTTTGC+TGG + chr2.4:53866552-53866571 None:intergenic 30.0%
!! GAGATTAGTTATAGCCTTAT+AGG - chr2.4:53862003-53862022 MS.gene073428:intron 30.0%
!! TGTTGCTTTGATGATAGAAT+TGG - chr2.4:53862251-53862270 MS.gene073428:intron 30.0%
!!! CTTGTTTTTTTAGTCAACCT+TGG - chr2.4:53861812-53861831 MS.gene073428:intron 30.0%
AAAGACAAAAGAAAAGTGGC+TGG - chr2.4:53864527-53864546 MS.gene073428:intron 35.0%
AACGAGTGTCTTGAAAGAAA+CGG - chr2.4:53864824-53864843 MS.gene073428:CDS 35.0%
AAGAAAGTCAACGATAACCA+AGG + chr2.4:53861832-53861851 None:intergenic 35.0%
AATTGATATATCCATGGCCA+AGG - chr2.4:53862030-53862049 MS.gene073428:intron 35.0%
ACAAAGAGAAAAACCATGCA+AGG + chr2.4:53861516-53861535 None:intergenic 35.0%
ACTATTGTTCTTCTTGATCG+TGG - chr2.4:53861771-53861790 MS.gene073428:intron 35.0%
AGGAGGTCTTCTATATATGA+AGG - chr2.4:53865990-53866009 MS.gene073428:intron 35.0%
ATCAGGTAGTGACTGATAAT+AGG + chr2.4:53865148-53865167 None:intergenic 35.0%
ATGATATCAAAGACTAACGG+AGG - chr2.4:53865543-53865562 MS.gene073428:intron 35.0%
CAAAACCAATGTTGGCAAAA+TGG + chr2.4:53863887-53863906 None:intergenic 35.0%
CAACCAAAACCATTTGTCAT+TGG + chr2.4:53862678-53862697 None:intergenic 35.0%
CATATTCCACTCGATTATCA+GGG + chr2.4:53863088-53863107 None:intergenic 35.0%
CATGTATTTGCAGAAAGAAG+TGG - chr2.4:53866117-53866136 MS.gene073428:intron 35.0%
CGATCAAGAAGAACAATAGT+AGG + chr2.4:53861771-53861790 None:intergenic 35.0%
CGCGTATAATCAAATTTGGA+TGG - chr2.4:53865516-53865535 MS.gene073428:intron 35.0%
CGTTTAAACAATCGTTACCT+TGG + chr2.4:53862050-53862069 None:intergenic 35.0%
CTATCACCACATAAACTAAG+AGG - chr2.4:53861603-53861622 MS.gene073428:intron 35.0%
CTCATATTACACAGACCTAT+CGG + chr2.4:53865374-53865393 None:intergenic 35.0%
CTGCTTGCAAGGTATATATA+AGG - chr2.4:53864879-53864898 MS.gene073428:CDS 35.0%
CTTTAAACAATGGAGGTTGT+TGG - chr2.4:53865260-53865279 MS.gene073428:CDS 35.0%
GAAGTAACTAACCTCTATAC+TGG + chr2.4:53863918-53863937 None:intergenic 35.0%
GAATGAGTCATGATTCATCA+TGG - chr2.4:53864619-53864638 MS.gene073428:CDS 35.0%
GAGGAGAAGATTTGAATTAC+AGG - chr2.4:53865562-53865581 MS.gene073428:intron 35.0%
GTCACGCGTATAATCAAATT+TGG - chr2.4:53865512-53865531 MS.gene073428:intron 35.0%
GTTGAGGTTGAAATCAAAGT+CGG + chr2.4:53864106-53864125 None:intergenic 35.0%
TAAACAACATATCAGCAACC+AGG + chr2.4:53865199-53865218 None:intergenic 35.0%
TAAACAGAAACGAATCCCTA+CGG + chr2.4:53864668-53864687 None:intergenic 35.0%
TACAAGGTTAAACTCAACGA+GGG + chr2.4:53862390-53862409 None:intergenic 35.0%
TACTGAACACCTTTCACAAT+AGG + chr2.4:53865048-53865067 None:intergenic 35.0%
TAGTGACTGATAATAGGAAG+AGG + chr2.4:53865142-53865161 None:intergenic 35.0%
TATGATTGTAAGTGCAAAGG+AGG - chr2.4:53865973-53865992 MS.gene073428:intron 35.0%
TATTTGTCAGGATACTTTCC+GGG - chr2.4:53865005-53865024 MS.gene073428:CDS 35.0%
TCACTCCACACTATATAACA+TGG - chr2.4:53863222-53863241 MS.gene073428:intron 35.0%
TCACTTGTTTATCCTGAGAA+AGG - chr2.4:53861687-53861706 MS.gene073428:intron 35.0%
TCATATTACACAGACCTATC+GGG + chr2.4:53865373-53865392 None:intergenic 35.0%
TCATATTCCACTCGATTATC+AGG + chr2.4:53863089-53863108 None:intergenic 35.0%
TCATGTTAGATGTTCCATGA+AGG - chr2.4:53863454-53863473 MS.gene073428:intron 35.0%
TGATGAGTCACTGATAACTA+TGG - chr2.4:53862905-53862924 MS.gene073428:intron 35.0%
TTACAAGGTTAAACTCAACG+AGG + chr2.4:53862391-53862410 None:intergenic 35.0%
TTAGCCACACTAAGTTTATG+TGG - chr2.4:53864582-53864601 MS.gene073428:intron 35.0%
TTCACCACATAAACTTAGTG+TGG + chr2.4:53864589-53864608 None:intergenic 35.0%
TTGAACAATGTCCAGTATAG+AGG - chr2.4:53863904-53863923 MS.gene073428:intron 35.0%
TTGAACTACATTCTTGGACT+TGG - chr2.4:53865676-53865695 MS.gene073428:intron 35.0%
! CTTTGTCGTTTGTAGTTACA+AGG + chr2.4:53862406-53862425 None:intergenic 35.0%
! GATTTTGCTGAAGGATATGA+AGG - chr2.4:53863332-53863351 MS.gene073428:intron 35.0%
! GTCTATTGTGTTTCTGTGAT+TGG - chr2.4:53864962-53864981 MS.gene073428:CDS 35.0%
! GTTATTTCGCCTTAAAGGTA+TGG - chr2.4:53862835-53862854 MS.gene073428:CDS 35.0%
!! AGAGTGTTATTTCGCCTTAA+AGG - chr2.4:53862830-53862849 MS.gene073428:CDS 35.0%
!! GTTGTTATTGATTAGCCTCT+TGG - chr2.4:53862628-53862647 MS.gene073428:intron 35.0%
!! TCATTTTGAGTAGAGCAATC+AGG + chr2.4:53865165-53865184 None:intergenic 35.0%
!!! CAAATGGTTTTGGTTGTTGT+CGG - chr2.4:53862682-53862701 MS.gene073428:intron 35.0%
!!! GCTGTATTTTTTCTCCTTCA+TGG + chr2.4:53863471-53863490 None:intergenic 35.0%
AAACGTGCTTGTCAATGTGA+TGG - chr2.4:53865922-53865941 MS.gene073428:intron 40.0%
AACAACTGCTATGACCACAA+AGG + chr2.4:53866166-53866185 None:intergenic 40.0%
AAGAACGGTTGTCTAAGTTG+AGG + chr2.4:53864122-53864141 None:intergenic 40.0%
AAGTCTGTTTAAGTGGAGGT+TGG - chr2.4:53864262-53864281 MS.gene073428:intron 40.0%
ACAAGGTTAAACTCAACGAG+GGG + chr2.4:53862389-53862408 None:intergenic 40.0%
ACAGTGACAACCATTTACCT+TGG + chr2.4:53865740-53865759 None:intergenic 40.0%
AGTATCACTCCCACAAAAGA+TGG + chr2.4:53864766-53864785 None:intergenic 40.0%
ATCGAGTGGAATATGAGTTC+TGG - chr2.4:53863093-53863112 MS.gene073428:intron 40.0%
ATTGTTCTTCTTGATCGTGG+AGG - chr2.4:53861774-53861793 MS.gene073428:intron 40.0%
ATTTGTCAGGATACTTTCCG+GGG - chr2.4:53865006-53865025 MS.gene073428:CDS 40.0%
CATGGTTGTCAAGTCTTTGA+AGG - chr2.4:53861714-53861733 MS.gene073428:intron 40.0%
CGATGAGACTGAAACTTGAA+AGG + chr2.4:53861747-53861766 None:intergenic 40.0%
CTGCTTTCAACAAATGGCTT+TGG + chr2.4:53863254-53863273 None:intergenic 40.0%
CTTCATAGCAGCTATGTTCA+AGG - chr2.4:53861546-53861565 MS.gene073428:CDS 40.0%
GATGGTTATACGACATGTGA+AGG - chr2.4:53865075-53865094 MS.gene073428:CDS 40.0%
GGCTATATGTGCTGGATTTA+AGG - chr2.4:53864224-53864243 MS.gene073428:CDS 40.0%
GGTAGAGAAAAACAGCATCA+CGG - chr2.4:53861578-53861597 MS.gene073428:CDS 40.0%
TACACATTGCCTTGTCGTAA+AGG + chr2.4:53866586-53866605 None:intergenic 40.0%
TATGTCACAATACATGCCAC+TGG - chr2.4:53866525-53866544 MS.gene073428:CDS 40.0%
TGCTAATGTAACTGCTTGCA+AGG - chr2.4:53864868-53864887 MS.gene073428:CDS 40.0%
TGTGAGTGTCCTATTGTGAA+AGG - chr2.4:53865036-53865055 MS.gene073428:CDS 40.0%
TTACATGGACTCAGAGATCA+TGG - chr2.4:53866498-53866517 MS.gene073428:CDS 40.0%
TTCAGCATCTTTGCTTTCCT+CGG + chr2.4:53862937-53862956 None:intergenic 40.0%
TTGAGCATGCCATACCTTTA+AGG + chr2.4:53862847-53862866 None:intergenic 40.0%
! ACAAAAGATGGTTTGGACCA+TGG + chr2.4:53864754-53864773 None:intergenic 40.0%
! ATGGTCCAAACCATCTTTTG+TGG - chr2.4:53864753-53864772 MS.gene073428:CDS 40.0%
! CACTGACTGCTTTCAACAAA+TGG + chr2.4:53863260-53863279 None:intergenic 40.0%
! TGGTCCAAACCATCTTTTGT+GGG - chr2.4:53864754-53864773 MS.gene073428:CDS 40.0%
! TGTCACCATTTTGCCAACAT+TGG - chr2.4:53863879-53863898 MS.gene073428:CDS 40.0%
! TGTGTTTTACAGATTGGAGG+AGG - chr2.4:53863844-53863863 MS.gene073428:CDS 40.0%
!! ACATTATTTTGCTGGTCCAG+TGG + chr2.4:53866544-53866563 None:intergenic 40.0%
!! CTATGTTCAAGGTCGTTTTG+TGG - chr2.4:53861557-53861576 MS.gene073428:CDS 40.0%
!! GATGGTGCTATAGGAAACTT+TGG - chr2.4:53861633-53861652 MS.gene073428:intron 40.0%
!! GGTAAAAACGATGGTGCTAT+AGG - chr2.4:53861624-53861643 MS.gene073428:intron 40.0%
!! GTGAAAGGTGTTCAGTATAG+AGG - chr2.4:53865051-53865070 MS.gene073428:CDS 40.0%
AACAATCGTTACCTTGGCCA+TGG + chr2.4:53862044-53862063 None:intergenic 45.0%
AATGGTTGTCACTGTCCAGT+TGG - chr2.4:53865745-53865764 MS.gene073428:intron 45.0%
ACATTCTTGGACTTGGCTCA+AGG - chr2.4:53865683-53865702 MS.gene073428:intron 45.0%
ATTGCCTTGTCGTAAAGGCT+CGG + chr2.4:53866581-53866600 None:intergenic 45.0%
CACTCCCACAAAAGATGGTT+TGG + chr2.4:53864761-53864780 None:intergenic 45.0%
CACTGTCCAGTTGGATTTCA+CGG - chr2.4:53865754-53865773 MS.gene073428:intron 45.0%
CATGCTCAGATTCTTGAGAG+AGG - chr2.4:53863185-53863204 MS.gene073428:intron 45.0%
CCCAAAATAGATACGCCGTA+GGG - chr2.4:53864650-53864669 MS.gene073428:CDS 45.0%
CCTCAAGTCTGTTTAAGTGG+AGG - chr2.4:53864258-53864277 MS.gene073428:intron 45.0%
CCTCCACTTAAACAGACTTG+AGG + chr2.4:53864261-53864280 None:intergenic 45.0%
CCTTCAGCAAAATCCTTCTC+TGG + chr2.4:53863326-53863345 None:intergenic 45.0%
CTGCAGCTGTAAGAACACTT+GGG - chr2.4:53865945-53865964 MS.gene073428:intron 45.0%
GAGCCTCAAGTCTGTTTAAG+TGG - chr2.4:53864255-53864274 MS.gene073428:intron 45.0%
GAGGAAAGCAAAGATGCTGA+AGG - chr2.4:53862936-53862955 MS.gene073428:intron 45.0%
GAGTGTCTTGAAAGAAACGG+AGG - chr2.4:53864827-53864846 MS.gene073428:CDS 45.0%
GATAACTATGGATTCTCCCG+AGG - chr2.4:53862917-53862936 MS.gene073428:intron 45.0%
GCAAAATCCTTCTCTGGATC+CGG + chr2.4:53863320-53863339 None:intergenic 45.0%
GGAGAGAACATCTGTCTTGA+AGG - chr2.4:53864203-53864222 MS.gene073428:CDS 45.0%
GGTCAGTTTGTAAGGAGGAA+AGG + chr2.4:53862368-53862387 None:intergenic 45.0%
GGTGTTCAGTATAGAGGTGA+TGG - chr2.4:53865057-53865076 MS.gene073428:CDS 45.0%
GGTTGAAATCAAAGTCGGAG+TGG + chr2.4:53864101-53864120 None:intergenic 45.0%
GTCTTGAAGGCTATATGTGC+TGG - chr2.4:53864216-53864235 MS.gene073428:CDS 45.0%
GTGGTCATAGCAGTTGTTGT+GGG - chr2.4:53866168-53866187 MS.gene073428:intron 45.0%
TAAAAGAGCCACATGGACAG+TGG - chr2.4:53865483-53865502 MS.gene073428:intron 45.0%
TATCCTGAGAAAGGCTCTCA+TGG - chr2.4:53861696-53861715 MS.gene073428:intron 45.0%
TCAGCATCTTTGCTTTCCTC+GGG + chr2.4:53862936-53862955 None:intergenic 45.0%
TCATTCTCCACATCAGCTTC+AGG + chr2.4:53863657-53863676 None:intergenic 45.0%
TGAAAGAAACGGAGGATGCT+GGG - chr2.4:53864835-53864854 MS.gene073428:CDS 45.0%
TGCAGCTGTAAGAACACTTG+GGG - chr2.4:53865946-53865965 MS.gene073428:intron 45.0%
TGCTGAAGGATATGAAGGGA+AGG - chr2.4:53863337-53863356 MS.gene073428:intron 45.0%
TGGAAAGGTCATTGCCTTTG+TGG - chr2.4:53866149-53866168 MS.gene073428:intron 45.0%
TGTGGTCATAGCAGTTGTTG+TGG - chr2.4:53866167-53866186 MS.gene073428:intron 45.0%
TTGAAAGAAACGGAGGATGC+TGG - chr2.4:53864834-53864853 MS.gene073428:CDS 45.0%
! CCAGAGAAGGATTTTGCTGA+AGG - chr2.4:53863323-53863342 MS.gene073428:intron 45.0%
! CCCTACGGCGTATCTATTTT+GGG + chr2.4:53864653-53864672 None:intergenic 45.0%
! GCAGTACTGAACTGAACAAG+CGG + chr2.4:53865314-53865333 None:intergenic 45.0%
! TCCCTACGGCGTATCTATTT+TGG + chr2.4:53864654-53864673 None:intergenic 45.0%
!! AACTTTTAATGGCTCTGCCG+CGG + chr2.4:53866410-53866429 None:intergenic 45.0%
!! TTTGGTTGTTGTCGGTGTCA+CGG - chr2.4:53862690-53862709 MS.gene073428:intron 45.0%
!!! TTTTTTTTTTTTTTTTTTGT+TGG - chr2.4:53861968-53861987 MS.gene073428:intron 5.0%
AATCCCACCAAACCCACGAA+CGG + chr2.4:53863421-53863440 None:intergenic 50.0%
ACCTCACCCTGATAATCGAG+TGG - chr2.4:53863079-53863098 MS.gene073428:CDS 50.0%
ACGAACAGCAACGACGAATG+TGG - chr2.4:53863116-53863135 MS.gene073428:intron 50.0%
ATAGCAGTTGTTGTGGGAGC+TGG - chr2.4:53866174-53866193 MS.gene073428:intron 50.0%
ATGCGGCTAAAAGAGCCACA+TGG - chr2.4:53865476-53865495 MS.gene073428:intron 50.0%
CAACCATGAGAGCCTTTCTC+AGG + chr2.4:53861702-53861721 None:intergenic 50.0%
CAACGAGGGGTCAGTTTGTA+AGG + chr2.4:53862376-53862395 None:intergenic 50.0%
CATAGAGTAGCGAACGAGAG+TGG - chr2.4:53863395-53863414 MS.gene073428:intron 50.0%
CCAGTTGGATTTCACGGAGA+TGG - chr2.4:53865760-53865779 MS.gene073428:intron 50.0%
CCATCTCCGTGAAATCCAAC+TGG + chr2.4:53865763-53865782 None:intergenic 50.0%
GAATCCGAGCCTTTACGACA+AGG - chr2.4:53866574-53866593 MS.gene073428:CDS 50.0%
GACACTCACAAACTCTTCCC+CGG + chr2.4:53865026-53865045 None:intergenic 50.0%
GCCCAAAATAGATACGCCGT+AGG - chr2.4:53864649-53864668 MS.gene073428:CDS 50.0%
GCTACAGAGAATGTGGTCCA+CGG + chr2.4:53866371-53866390 None:intergenic 50.0%
GCTCAGATTCTTGAGAGAGG+TGG - chr2.4:53863188-53863207 MS.gene073428:intron 50.0%
GCTGCAGCTGTAAGAACACT+TGG - chr2.4:53865944-53865963 MS.gene073428:intron 50.0%
GGCATTCGCTACAGAGAATG+TGG + chr2.4:53866378-53866397 None:intergenic 50.0%
GTATGGCATGCTCAACTAGC+TGG - chr2.4:53862852-53862871 MS.gene073428:CDS 50.0%
GTCAGCCACTAAAACTGCTG+CGG + chr2.4:53862880-53862899 None:intergenic 50.0%
TCCACTCGATTATCAGGGTG+AGG + chr2.4:53863083-53863102 None:intergenic 50.0%
TCTCTGTAGCGAATGCCCAA+TGG - chr2.4:53866381-53866400 MS.gene073428:CDS 50.0%
TGGTGATCCTGAAGCTGATG+TGG - chr2.4:53863647-53863666 MS.gene073428:intron 50.0%
ACAGAGAATGTGGTCCACGG+CGG + chr2.4:53866368-53866387 None:intergenic 55.0%
CAGATTGGAGGAGGATCTCG+TGG - chr2.4:53863853-53863872 MS.gene073428:CDS 55.0%
CGAGGGGTCAGTTTGTAAGG+AGG + chr2.4:53862373-53862392 None:intergenic 55.0%
CGGCGGTAATTGCAGTCACA+AGG + chr2.4:53866351-53866370 None:intergenic 55.0%
TGTGACTGCAATTACCGCCG+TGG - chr2.4:53866351-53866370 MS.gene073428:CDS 55.0%
!! TGGAGCCGCAGCAGTTTTAG+TGG - chr2.4:53862872-53862891 MS.gene073428:intron 55.0%
AGAGTGGCCGTTCGTGGGTT+TGG - chr2.4:53863411-53863430 MS.gene073428:intron 60.0%
CCACGGAAGATACTGTGCGC+CGG - chr2.4:53863298-53863317 MS.gene073428:intron 60.0%
CGAATGCCCAATGGCATCCG+CGG - chr2.4:53866390-53866409 MS.gene073428:CDS 60.0%
GAACGAGAGTGGCCGTTCGT+GGG - chr2.4:53863406-53863425 MS.gene073428:intron 60.0%
! GTTGTGGGAGCTGGTCTAGC+TGG - chr2.4:53866183-53866202 MS.gene073428:intron 60.0%
! TGGCCGTTCGTGGGTTTGGT+GGG - chr2.4:53863415-53863434 MS.gene073428:intron 60.0%
CCGGCGCACAGTATCTTCCG+TGG + chr2.4:53863301-53863320 None:intergenic 65.0%
CGAACGAGAGTGGCCGTTCG+TGG - chr2.4:53863405-53863424 MS.gene073428:intron 65.0%
CTGTGCGCCGGATCCAGAGA+AGG - chr2.4:53863310-53863329 MS.gene073428:intron 65.0%
GCTCTGCCGCGGATGCCATT+GGG + chr2.4:53866399-53866418 None:intergenic 65.0%
GTGGCCGTTCGTGGGTTTGG+TGG - chr2.4:53863414-53863433 MS.gene073428:intron 65.0%
GGCTCTGCCGCGGATGCCAT+TGG + chr2.4:53866400-53866419 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 53861507 53866606 53861507 ID=MS.gene073428
chr2.4 mRNA 53861507 53866606 53861507 ID=MS.gene073428.t1;Parent=MS.gene073428
chr2.4 exon 53866318 53866606 53866318 ID=MS.gene073428.t1.exon1;Parent=MS.gene073428.t1
chr2.4 CDS 53866318 53866606 53866318 ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1
chr2.4 exon 53864589 53865281 53864589 ID=MS.gene073428.t1.exon2;Parent=MS.gene073428.t1
chr2.4 CDS 53864589 53865281 53864589 ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1
chr2.4 exon 53864409 53864497 53864409 ID=MS.gene073428.t1.exon3;Parent=MS.gene073428.t1
chr2.4 CDS 53864409 53864497 53864409 ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1
chr2.4 exon 53864188 53864257 53864188 ID=MS.gene073428.t1.exon4;Parent=MS.gene073428.t1
chr2.4 CDS 53864188 53864257 53864188 ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1
chr2.4 exon 53863834 53863917 53863834 ID=MS.gene073428.t1.exon5;Parent=MS.gene073428.t1
chr2.4 CDS 53863834 53863917 53863834 ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1
chr2.4 exon 53863224 53863300 53863224 ID=MS.gene073428.t1.exon6;Parent=MS.gene073428.t1
chr2.4 CDS 53863224 53863300 53863224 ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1
chr2.4 exon 53863017 53863098 53863017 ID=MS.gene073428.t1.exon7;Parent=MS.gene073428.t1
chr2.4 CDS 53863017 53863098 53863017 ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1
chr2.4 exon 53862792 53862874 53862792 ID=MS.gene073428.t1.exon8;Parent=MS.gene073428.t1
chr2.4 CDS 53862792 53862874 53862792 ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1
chr2.4 exon 53862314 53862380 53862314 ID=MS.gene073428.t1.exon9;Parent=MS.gene073428.t1
chr2.4 CDS 53862314 53862380 53862314 ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1
chr2.4 exon 53862083 53862211 53862083 ID=MS.gene073428.t1.exon10;Parent=MS.gene073428.t1
chr2.4 CDS 53862083 53862211 53862083 ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1
chr2.4 exon 53861880 53861983 53861880 ID=MS.gene073428.t1.exon11;Parent=MS.gene073428.t1
chr2.4 CDS 53861880 53861983 53861880 ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1
chr2.4 exon 53861507 53861617 53861507 ID=MS.gene073428.t1.exon12;Parent=MS.gene073428.t1
chr2.4 CDS 53861507 53861617 53861507 ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1
Gene Sequence

>MS.gene073428

ATGAAACCTTGCATGGTTTTTCTCTTTGTCTTGTTCTTTCTTCATAGCAGCTATGTTCAAGGTCGTTTTGTGGTAGAGAAAAACAGCATCACGGTTCTATCACCACATAAACTAAGAGGTAAAAACGATGGTGCTATAGGAAACTTTGGTATTCCAAATTATGGAGGGTATATTGTAGGGTCACTTGTTTATCCTGAGAAAGGCTCTCATGGTTGTCAAGTCTTTGAAGGTGATAAGCCTTTCAAGTTTCAGTCTCATCGTCCTACTATTGTTCTTCTTGATCGTGGAGGTATTGCTTTTTTCTTCTTGTTTTTTTAGTCAACCTTGGTTATCGTTGACTTTCTTTAATTAGTGTATTGTCTGCTTCATATTTTATTCACCTGCACATGCTAATTTAATGTTTTGCTTTTTTGATTCTGTTTATTTTTACTGTTACATAAATTAATGTCTGTTCTGTTCTGTTTTTTTTTTTTTTTTTTGTTGGCCTATATATGCTGAGATTAGTTATAGCCTTATAGGATTTAATTGATATATCCATGGCCAAGGTAACGATTGTTTAAACGGTCAATCGATCATACTCATTAGATCGTTAAAGACTTTTGACTTTCATGGTAACTACTTTTAAAGTCACACATACGGCTAATTTTGATTTGTTGACGCTGTAAAGTTAACTTTGACAGTGTATCAAAATTGAACTATTAGTAATATACTTATATCTGTGAATCATATAAAGGATCACTGATATGTTGCTTTGATGATAGAATTGGTTCATCAGTTGATTGATCTTTTTTTCTTACTCATTTCCGTATAGGATTTCTTTATAGCCTATAAAATTTTCTGTAATTCCTATTTTTATTACCTTTCCTCCTTACAAACTGACCCCTCGTTGAGTTTAACCTTGTAACTACAAACGACAAAGTTCAAATTCTTTCGCAGACAATTATCAAATGGTTACTACTACCATTTTTATCAGTAATTAAAAAAACATCATAATCTATTTTCATGCTTTTGTGATGCTAAAACATATGAATATAAAAGTTCTCTCTTGAAATTCAACACATTAGAATGTTATGACGAAGTTTAATTCGTGTAACCAACCCCATTTGAAAATTGTTTTAGTTGTTGTTATTGATTAGCCTCTTGGAAGCAAACATATTATAGATCAATTCCAATGACAAATGGTTTTGGTTGTTGTCGGTGTCACGGTAGTTTCTTGAAAGCTAATAAAATGACTAGTCTTAATGGAAAAGTCACTCAAAGGACCAAATTTTTTTTTTAAATCCAAGTTTTGGAATGCTTATTGACAAAGTTACTTGCAATTGTAGAGTGTTATTTCGCCTTAAAGGTATGGCATGCTCAACTAGCTGGAGCCGCAGCAGTTTTAGTGGCTGACAGCATTGATGAGTCACTGATAACTATGGATTCTCCCGAGGAAAGCAAAGATGCTGAAGGCTACATAGAGAAGATTGTAATCCCATCAGTATTAGTAGAGAAATCCTTTGGTGATTCATTGAAAGAAGCTTTAAACAACAAAGATGAAGTTTTACTAAGAATAGATTGGAGGGAATCAGTACCTCACCCTGATAATCGAGTGGAATATGAGTTCTGGACGAACAGCAACGACGAATGTGGTGCACGTTGCGATGAACAGATGAATTTTGTGAAGAATTTCAAGGGTCATGCTCAGATTCTTGAGAGAGGTGGATATACATTGTTCACTCCACACTATATAACATGGTTTTGTCCAAAGCCATTTGTTGAAAGCAGTCAGTGCAAGTCTCAATGTATAAACCACGGAAGATACTGTGCGCCGGATCCAGAGAAGGATTTTGCTGAAGGATATGAAGGGAAGGATATAGTGTATGAGAATTTGAGGCAGCTCTGTGTTCATAGAGTAGCGAACGAGAGTGGCCGTTCGTGGGTTTGGTGGGATTATGTGACAGATTTTCATGTTAGATGTTCCATGAAGGAGAAAAAATACAGCAAAGATTGTGCTGAAGTTGTCATGAAATCATTAGGTAAGCGAATATTTCATATACTTCTGTCGATTGGATTCTTCTGTTGTTGTTTCTTTTAAAAAAGTTTGATCTTAGATTCTTTATACTACAGATCTTCCTCTTGACAAAATTAAGAAATGTGTTGGTGATCCTGAAGCTGATGTGGAGAATGAAGTGCTAAAGATTGAACAAACATCACAGGTTAATATTTAATACTTAATGATATGTCTTTTGAAAATTAATATATTTCCAAACTGTTGTAAGCAAATAAAGGCTGCTACTATCTGAAATGAAACATATATTTCATATGTCTAATAACTTATATACTGTTTGATCCATTTGTGTTTTACAGATTGGAGGAGGATCTCGTGGCGATGTCACCATTTTGCCAACATTGGTTTTGAACAATGTCCAGTATAGAGGTTAGTTACTTCAATATGTATTTGATAGATGGTTTGCTTGATATCGCCTTACATGCTATTAATAAATTTAGCTATTATCAACATTCATTTATCATATTTGTTGAGTTGAGAGTTTAGTCGATTAAGTTTCAAAATCTTTGTCATTTGTGTAATGTAGTGGACACATATTTTACCACTCCGACTTTGATTTCAACCTCAACTTAGACAACCGTTCTTATTAACGTATCTTATGTATCAGATTTTTAAATATTTTGTTTGATTTGTCTAAAGGAAAATTGGAGAGAACATCTGTCTTGAAGGCTATATGTGCTGGATTTAAGGAGACTACTGAGCCTCAAGTCTGTTTAAGTGGAGGTTGGTGTGCTTAATTTTACATTATATGAACTATGTTAATGATAGATTCTTTTAGTTGAAAATATGGTTATCAAATCGTGAATCGAATTTCCTATTTTGAGCATTGTGAATTGAATCTTATTATGAATTGTATGATACATTACAGATAAAAATGACATTTTTAAGTAAAACTAAGTGACATAGCAAAATTTTATGCTAATAGATAATGCACAAACCTCAAAATAATTCAATATTCAAGTCGTAAATCAAAGACAAAAGAAAAGTGGCTGGATATAGCTATACAAAGTTAACAAAAAAAGTGGTTAGCCACACTAAGTTTATGTGGTGAATGATTCATTAGAATGAGTCATGATTCATCATGGTATTCATGCCCAAAATAGATACGCCGTAGGGATTCGTTTCTGTTTAAATCAGTTTTGTATCAAATCGAGATACCACTAGCATGTATTGTTATTGTAAGATATTGAATAACCATGGTCCAAACCATCTTTTGTGGGAGTGATACTGACTTTATTCTTGTTTTGGTTTATCAGATATTGAAACTAACGAGTGTCTTGAAAGAAACGGAGGATGCTGGGAAGACAGAAATGCTAATGTAACTGCTTGCAAGGTATATATAAGGAATTTCTACAACCAATTTTTCTTCCAAAACATAATTACTATTCACTAGACATATATAATGGTCTATTGTGTTTCTGTGATTGGCTGCAAGTTGAACATTTTATTATTTGTCAGGATACTTTCCGGGGAAGAGTTTGTGAGTGTCCTATTGTGAAAGGTGTTCAGTATAGAGGTGATGGTTATACGACATGTGAAGGTATTCCTTCTGAATTACTCTACTCAAAATTCTAAAAAGTTACCTCTTCCTATTATCAGTCACTACCTGATTGCTCTACTCAAAATGATAAGCTACTTTCCTGGTTGCTGATATGTTGTTTACTCTATTCTTTATTTGACAGCTTTTGGACCAGCAAGATGTTCTTTAAACAATGGAGGTTGTTGGTCAGAAACTAGAGATAAAGTTACTTTCTCCGCTTGTTCAGTTCAGTACTGCTTAACCAAATCTTCAGTTTTCCTTCTTTTCTTTTATCCCGATAGGTCTGTGTAATATGAGTACTTTTATGGCTTTAGTCCCTACAAAAAAAATTATTCTCTCTGATTTAGTCTCTAAGTCTTTTCTTCATCAAAATTTGATGATGCGGCTAAAAGAGCCACATGGACAGTGGTCAGTGGTCACGCGTATAATCAAATTTGGATGGTAAGATGATATCAAAGACTAACGGAGGAGAAGATTTGAATTACAGGGAGAGAATCTAAAAAAAGCTCTAGGATTAATTAAAATAAAAAAGAACTCATATTACATGGACTAAAAGCGCTATGTATCGCAAAATATTTATTGAACTACATTCTTGGACTTGGCTCAAGGCTAACAGATTTTCCTTTCTGAATAAAGGAATCCAAGGTAAATGGTTGTCACTGTCCAGTTGGATTTCACGGAGATGGTAATAATAAATGTGAAGGTAATATTTGTTTCTGCGACAACTTAAACTTTGTATTCTTTATTACATGATCGATTTTATGAAAATATAACTCTTTGTATAATTTCTTTTGATCTTATTCAGATGTTGATGAATGCAAAGAAAAACGTGCTTGTCAATGTGATGGCTGCAGCTGTAAGAACACTTGGGGTAGTTATGATTGTAAGTGCAAAGGAGGTCTTCTATATATGAAGGAACAAGATATGTGTATTGGTAAGATATTCAAATCTCAAAATAAACTAAATTATCATTGAAATTACACGTTTCACATCATAGTCCAAGATTATAATTTTTCTTTTCATGTATTTGCAGAAAGAAGTGGTTCAAAATTTGGAAAGGTCATTGCCTTTGTGGTCATAGCAGTTGTTGTGGGAGCTGGTCTAGCTGGTTACGTGTTCTACAAGTATAGACTAAGGGTAAGCCTATTTATTCTCAACTATATGTCTAGATCTAATGTATACATCCTAGATTTTAAATGCAGTTATTATGCATTCATATTCCCTAAAAACCACATATTCAATGCATATTTACCTTGTGACTGCAATTACCGCCGTGGACCACATTCTCTGTAGCGAATGCCCAATGGCATCCGCGGCAGAGCCATTAAAAGTTAAAACCACATAATTAGTTTATTAGCATCATAATTTAATTACCTATATCTGTTTTTATTTTTTGTAGTCTTACATGGACTCAGAGATCATGGCTATTATGTCACAATACATGCCACTGGACCAGCAAAATAATGTAGTTCATGCTGAATCCGAGCCTTTACGACAAGGCAATGTGTAA

Protein sequence

>MS.gene073428.t1

MKPCMVFLFVLFFLHSSYVQGRFVVEKNSITVLSPHKLRGKNDGAIGNFGIPNYGGYIVGSLVYPEKGSHGCQVFEGDKPFKFQSHRPTIVLLDRGECYFALKVWHAQLAGAAAVLVADSIDESLITMDSPEESKDAEGYIEKIVIPSVLVEKSFGDSLKEALNNKDEVLLRIDWRESVPHPDNRVEYEFWTNSNDECGARCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPKPFVESSQCKSQCINHGRYCAPDPEKDFAEGYEGKDIVYENLRQLCVHRVANESGRSWVWWDYVTDFHVRCSMKEKKYSKDCAEVVMKSLDLPLDKIKKCVGDPEADVENEVLKIEQTSQIGGGSRGDVTILPTLVLNNVQYRGKLERTSVLKAICAGFKETTEPQVCLSGDIETNECLERNGGCWEDRNANVTACKDTFRGRVCECPIVKGVQYRGDGYTTCEAFGPARCSLNNGGCWSETRDKVTFSACSESKVNGCHCPVGFHGDGNNKCEDVDECKEKRACQCDGCSCKNTWGSYDCKCKGGLLYMKEQDMCIERSGSKFGKVIAFVVIAVVVGAGLAGYVFYKYRLRSYMDSEIMAIMSQYMPLDQQNNVVHAESEPLRQGNV