Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073428.t1 | XP_013463334.1 | 95.5 | 625 | 27 | 1 | 1 | 625 | 1 | 624 | 0.00E+00 | 1250.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073428.t1 | Q9FYH7 | 71.1 | 609 | 173 | 2 | 2 | 610 | 6 | 611 | 1.4e-278 | 959.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073428.t1 | A0A072VGT5 | 95.5 | 625 | 27 | 1 | 1 | 625 | 1 | 624 | 0.0e+00 | 1250.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene073428 | 0.841538 | 4.47E-58 | -1.69E-46 |
MS.gene049499 | MS.gene073428 | 0.80634 | 8.63E-50 | -1.69E-46 |
MS.gene049567 | MS.gene073428 | 0.849248 | 3.65E-60 | -1.69E-46 |
MS.gene049983 | MS.gene073428 | 0.807529 | 4.84E-50 | -1.69E-46 |
MS.gene050559 | MS.gene073428 | 0.845448 | 4.04E-59 | -1.69E-46 |
MS.gene050561 | MS.gene073428 | 0.846798 | 1.73E-59 | -1.69E-46 |
MS.gene050562 | MS.gene073428 | 0.842327 | 2.77E-58 | -1.69E-46 |
MS.gene050780 | MS.gene073428 | 0.801551 | 8.53E-49 | -1.69E-46 |
MS.gene051121 | MS.gene073428 | 0.807131 | 5.87E-50 | -1.69E-46 |
MS.gene051154 | MS.gene073428 | 0.806037 | 9.99E-50 | -1.69E-46 |
MS.gene051181 | MS.gene073428 | 0.808699 | 2.72E-50 | -1.69E-46 |
MS.gene051198 | MS.gene073428 | 0.804691 | 1.91E-49 | -1.69E-46 |
MS.gene051279 | MS.gene073428 | 0.82292 | 1.83E-53 | -1.69E-46 |
MS.gene051332 | MS.gene073428 | 0.805935 | 1.05E-49 | -1.69E-46 |
MS.gene051490 | MS.gene073428 | 0.810493 | 1.12E-50 | -1.69E-46 |
MS.gene051492 | MS.gene073428 | 0.813543 | 2.43E-51 | -1.69E-46 |
MS.gene051744 | MS.gene073428 | 0.876606 | 1.22E-68 | -1.69E-46 |
MS.gene051800 | MS.gene073428 | 0.804104 | 2.54E-49 | -1.69E-46 |
MS.gene051832 | MS.gene073428 | 0.822922 | 1.83E-53 | -1.69E-46 |
MS.gene052037 | MS.gene073428 | 0.817722 | 2.85E-52 | -1.69E-46 |
MS.gene052208 | MS.gene073428 | 0.832345 | 9.97E-56 | -1.69E-46 |
MS.gene052239 | MS.gene073428 | -0.805228 | 1.48E-49 | -1.69E-46 |
MS.gene052677 | MS.gene073428 | 0.801105 | 1.05E-48 | -1.69E-46 |
MS.gene052685 | MS.gene073428 | 0.811889 | 5.59E-51 | -1.69E-46 |
MS.gene053006 | MS.gene073428 | 0.815394 | 9.46E-52 | -1.69E-46 |
MS.gene053094 | MS.gene073428 | 0.849271 | 3.60E-60 | -1.69E-46 |
MS.gene053151 | MS.gene073428 | 0.833988 | 3.89E-56 | -1.69E-46 |
MS.gene053296 | MS.gene073428 | 0.805565 | 1.26E-49 | -1.69E-46 |
MS.gene053575 | MS.gene073428 | 0.815137 | 1.08E-51 | -1.69E-46 |
MS.gene053643 | MS.gene073428 | 0.834675 | 2.61E-56 | -1.69E-46 |
MS.gene053647 | MS.gene073428 | 0.825478 | 4.59E-54 | -1.69E-46 |
MS.gene053963 | MS.gene073428 | 0.820823 | 5.59E-53 | -1.69E-46 |
MS.gene054022 | MS.gene073428 | 0.811602 | 6.45E-51 | -1.69E-46 |
MS.gene05410 | MS.gene073428 | 0.821605 | 3.69E-53 | -1.69E-46 |
MS.gene05414 | MS.gene073428 | 0.824417 | 8.16E-54 | -1.69E-46 |
MS.gene05415 | MS.gene073428 | 0.80674 | 7.10E-50 | -1.69E-46 |
MS.gene054236 | MS.gene073428 | 0.807548 | 4.79E-50 | -1.69E-46 |
MS.gene05439 | MS.gene073428 | 0.829015 | 6.52E-55 | -1.69E-46 |
MS.gene054576 | MS.gene073428 | 0.859019 | 5.52E-63 | -1.69E-46 |
MS.gene054651 | MS.gene073428 | 0.82031 | 7.34E-53 | -1.69E-46 |
MS.gene054892 | MS.gene073428 | 0.852009 | 6.11E-61 | -1.69E-46 |
MS.gene054893 | MS.gene073428 | 0.847996 | 8.12E-60 | -1.69E-46 |
MS.gene054968 | MS.gene073428 | 0.809747 | 1.62E-50 | -1.69E-46 |
MS.gene055147 | MS.gene073428 | 0.825531 | 4.46E-54 | -1.69E-46 |
MS.gene055226 | MS.gene073428 | 0.835858 | 1.31E-56 | -1.69E-46 |
MS.gene055724 | MS.gene073428 | 0.804612 | 1.99E-49 | -1.69E-46 |
MS.gene056162 | MS.gene073428 | 0.803511 | 3.37E-49 | -1.69E-46 |
MS.gene056174 | MS.gene073428 | 0.843938 | 1.03E-58 | -1.69E-46 |
MS.gene056444 | MS.gene073428 | 0.845557 | 3.77E-59 | -1.69E-46 |
MS.gene056677 | MS.gene073428 | 0.802215 | 6.24E-49 | -1.69E-46 |
MS.gene056699 | MS.gene073428 | 0.810524 | 1.10E-50 | -1.69E-46 |
MS.gene05686 | MS.gene073428 | 0.876936 | 9.39E-69 | -1.69E-46 |
MS.gene057194 | MS.gene073428 | 0.810084 | 1.37E-50 | -1.69E-46 |
MS.gene057208 | MS.gene073428 | 0.800929 | 1.14E-48 | -1.69E-46 |
MS.gene057869 | MS.gene073428 | 0.802419 | 5.66E-49 | -1.69E-46 |
MS.gene058009 | MS.gene073428 | 0.800171 | 1.63E-48 | -1.69E-46 |
MS.gene058010 | MS.gene073428 | 0.857093 | 2.06E-62 | -1.69E-46 |
MS.gene058289 | MS.gene073428 | 0.814876 | 1.23E-51 | -1.69E-46 |
MS.gene058477 | MS.gene073428 | 0.800236 | 1.58E-48 | -1.69E-46 |
MS.gene058781 | MS.gene073428 | 0.804754 | 1.86E-49 | -1.69E-46 |
MS.gene058783 | MS.gene073428 | 0.801799 | 7.59E-49 | -1.69E-46 |
MS.gene058979 | MS.gene073428 | 0.819359 | 1.21E-52 | -1.69E-46 |
MS.gene05952 | MS.gene073428 | 0.82266 | 2.10E-53 | -1.69E-46 |
MS.gene059550 | MS.gene073428 | 0.814872 | 1.23E-51 | -1.69E-46 |
MS.gene059634 | MS.gene073428 | 0.821425 | 4.06E-53 | -1.69E-46 |
MS.gene059774 | MS.gene073428 | 0.824396 | 8.26E-54 | -1.69E-46 |
MS.gene060011 | MS.gene073428 | 0.822689 | 2.07E-53 | -1.69E-46 |
MS.gene060167 | MS.gene073428 | 0.808352 | 3.23E-50 | -1.69E-46 |
MS.gene060373 | MS.gene073428 | 0.800562 | 1.36E-48 | -1.69E-46 |
MS.gene060412 | MS.gene073428 | 0.842949 | 1.89E-58 | -1.69E-46 |
MS.gene060413 | MS.gene073428 | 0.804238 | 2.38E-49 | -1.69E-46 |
MS.gene060520 | MS.gene073428 | 0.806124 | 9.58E-50 | -1.69E-46 |
MS.gene060697 | MS.gene073428 | 0.82226 | 2.60E-53 | -1.69E-46 |
MS.gene060785 | MS.gene073428 | 0.814638 | 1.39E-51 | -1.69E-46 |
MS.gene060840 | MS.gene073428 | 0.861203 | 1.21E-63 | -1.69E-46 |
MS.gene060935 | MS.gene073428 | 0.81289 | 3.38E-51 | -1.69E-46 |
MS.gene060937 | MS.gene073428 | 0.811249 | 7.69E-51 | -1.69E-46 |
MS.gene061047 | MS.gene073428 | 0.80085 | 1.19E-48 | -1.69E-46 |
MS.gene061188 | MS.gene073428 | 0.813353 | 2.67E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073428.t1 | MTR_2g437910 | 98.080 | 625 | 11 | 1 | 1 | 625 | 1 | 624 | 0.0 | 1276 |
MS.gene073428.t1 | MTR_1g106940 | 63.894 | 601 | 209 | 3 | 21 | 614 | 26 | 625 | 0.0 | 832 |
MS.gene073428.t1 | MTR_5g005100 | 63.175 | 611 | 215 | 6 | 6 | 612 | 9 | 613 | 0.0 | 818 |
MS.gene073428.t1 | MTR_8g005800 | 59.076 | 628 | 240 | 5 | 1 | 615 | 1 | 624 | 0.0 | 789 |
MS.gene073428.t1 | MTR_7g073350 | 61.139 | 597 | 225 | 4 | 21 | 613 | 22 | 615 | 0.0 | 779 |
MS.gene073428.t1 | MTR_1g106940 | 65.517 | 493 | 166 | 2 | 21 | 510 | 26 | 517 | 0.0 | 705 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073428.t1 | AT1G30900 | 70.048 | 621 | 183 | 2 | 2 | 622 | 6 | 623 | 0.0 | 944 |
MS.gene073428.t1 | AT4G20110 | 68.882 | 617 | 188 | 3 | 5 | 620 | 10 | 623 | 0.0 | 933 |
MS.gene073428.t1 | AT4G20110 | 67.949 | 624 | 191 | 5 | 2 | 620 | 7 | 626 | 0.0 | 921 |
MS.gene073428.t1 | AT2G34940 | 61.779 | 607 | 226 | 4 | 5 | 610 | 10 | 611 | 0.0 | 825 |
MS.gene073428.t1 | AT2G14720 | 63.500 | 600 | 213 | 4 | 18 | 612 | 21 | 619 | 0.0 | 822 |
MS.gene073428.t1 | AT2G14720 | 63.500 | 600 | 213 | 4 | 18 | 612 | 21 | 619 | 0.0 | 822 |
MS.gene073428.t1 | AT2G14740 | 63.317 | 597 | 213 | 4 | 21 | 612 | 24 | 619 | 0.0 | 821 |
MS.gene073428.t1 | AT2G14740 | 63.317 | 597 | 213 | 4 | 21 | 612 | 24 | 619 | 0.0 | 821 |
MS.gene073428.t1 | AT3G52850 | 62.007 | 608 | 225 | 4 | 8 | 609 | 5 | 612 | 0.0 | 790 |
MS.gene073428.t1 | AT2G30290 | 57.605 | 618 | 255 | 4 | 1 | 612 | 1 | 617 | 0.0 | 781 |
MS.gene073428.t1 | AT2G30290 | 57.605 | 618 | 255 | 4 | 1 | 612 | 1 | 617 | 0.0 | 780 |
Find 129 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGAGCATGCCATACCTTTA+AGG | 0.157221 | 2.4:+53865247 | None:intergenic |
GAAAGAAGTGGTTCAAAATT+TGG | 0.164004 | 2.4:-53861962 | MS.gene073428:CDS |
ACAATATACCCTCCATAATT+TGG | 0.203127 | 2.4:+53866431 | None:intergenic |
GGCTATATGTGCTGGATTTA+AGG | 0.203205 | 2.4:-53863867 | MS.gene073428:CDS |
AACTTTGGTATTCCAAATTA+TGG | 0.212484 | 2.4:-53866443 | MS.gene073428:CDS |
TCATATTCCACTCGATTATC+AGG | 0.227038 | 2.4:+53865005 | None:intergenic |
TGATTTGTCTAAAGGAAAAT+TGG | 0.265770 | 2.4:-53863909 | MS.gene073428:intron |
CACTGACTGCTTTCAACAAA+TGG | 0.295544 | 2.4:+53864834 | None:intergenic |
CTGCTTTCAACAAATGGCTT+TGG | 0.319275 | 2.4:+53864840 | None:intergenic |
AGAGTGTTATTTCGCCTTAA+AGG | 0.323181 | 2.4:-53865261 | MS.gene073428:CDS |
TTCAGCATCTTTGCTTTCCT+CGG | 0.331417 | 2.4:+53865157 | None:intergenic |
TTATTTGTCAGGATACTTTC+CGG | 0.332886 | 2.4:-53863087 | MS.gene073428:intron |
CAAAACCAATGTTGGCAAAA+TGG | 0.338454 | 2.4:+53864207 | None:intergenic |
CACTGTCCAGTTGGATTTCA+CGG | 0.347022 | 2.4:-53862337 | MS.gene073428:CDS |
TCATTCTCCACATCAGCTTC+AGG | 0.349453 | 2.4:+53864437 | None:intergenic |
ATAAAGGAATCCAAGGTAAA+TGG | 0.350972 | 2.4:-53862364 | MS.gene073428:intron |
AGAGTGGCCGTTCGTGGGTT+TGG | 0.359998 | 2.4:-53864680 | MS.gene073428:CDS |
TTGTTTAAAGAACATCTTGC+TGG | 0.381896 | 2.4:+53862844 | None:intergenic |
ATCGAGTGGAATATGAGTTC+TGG | 0.384999 | 2.4:-53864998 | MS.gene073428:CDS |
CTTCATAGCAGCTATGTTCA+AGG | 0.389548 | 2.4:-53866545 | MS.gene073428:CDS |
TATTTGTCAGGATACTTTCC+GGG | 0.390669 | 2.4:-53863086 | MS.gene073428:intron |
GAAGTTGTCATGAAATCATT+AGG | 0.394627 | 2.4:-53864588 | MS.gene073428:intron |
CATGGTTGTCAAGTCTTTGA+AGG | 0.396498 | 2.4:-53866377 | MS.gene073428:CDS |
TGATGAGTCACTGATAACTA+TGG | 0.408160 | 2.4:-53865186 | MS.gene073428:CDS |
GAAGTAACTAACCTCTATAC+TGG | 0.412577 | 2.4:+53864176 | None:intergenic |
ATAGCAGTTGTTGTGGGAGC+TGG | 0.417748 | 2.4:-53861917 | MS.gene073428:CDS |
TGGAAAGGTCATTGCCTTTG+TGG | 0.430461 | 2.4:-53861942 | MS.gene073428:CDS |
GGAGAGAACATCTGTCTTGA+AGG | 0.450883 | 2.4:-53863888 | MS.gene073428:CDS |
TACTGAACACCTTTCACAAT+AGG | 0.450899 | 2.4:+53863046 | None:intergenic |
TTGAACAATGTCCAGTATAG+AGG | 0.451686 | 2.4:-53864187 | MS.gene073428:intron |
TACACATTGCCTTGTCGTAA+AGG | 0.456099 | 2.4:+53861508 | None:intergenic |
TTGAAAGAAACGGAGGATGC+TGG | 0.457493 | 2.4:-53863257 | MS.gene073428:CDS |
AATTATGGAGGGTATATTGT+AGG | 0.457688 | 2.4:-53866428 | MS.gene073428:CDS |
CAACCATGAGAGCCTTTCTC+AGG | 0.458707 | 2.4:+53866392 | None:intergenic |
GTTATTTCGCCTTAAAGGTA+TGG | 0.459481 | 2.4:-53865256 | MS.gene073428:CDS |
CCTTCAGCAAAATCCTTCTC+TGG | 0.460323 | 2.4:+53864768 | None:intergenic |
CTTTAAACAATGGAGGTTGT+TGG | 0.461286 | 2.4:-53862831 | MS.gene073428:CDS |
GTTGTGGGAGCTGGTCTAGC+TGG | 0.461908 | 2.4:-53861908 | MS.gene073428:CDS |
CGAACGAGAGTGGCCGTTCG+TGG | 0.468066 | 2.4:-53864686 | MS.gene073428:CDS |
GTATGGCATGCTCAACTAGC+TGG | 0.473128 | 2.4:-53865239 | MS.gene073428:CDS |
TGGCCGTTCGTGGGTTTGGT+GGG | 0.474667 | 2.4:-53864676 | MS.gene073428:CDS |
GTGGCCGTTCGTGGGTTTGG+TGG | 0.475737 | 2.4:-53864677 | MS.gene073428:CDS |
CCATCTCCGTGAAATCCAAC+TGG | 0.478314 | 2.4:+53862331 | None:intergenic |
AAGGAACAAGATATGTGTAT+TGG | 0.478819 | 2.4:-53862082 | MS.gene073428:intron |
GTATTAGTAGAGAAATCCTT+TGG | 0.486574 | 2.4:-53865104 | MS.gene073428:CDS |
TCAGCATCTTTGCTTTCCTC+GGG | 0.488925 | 2.4:+53865158 | None:intergenic |
ATATAGTGTATGAGAATTTG+AGG | 0.490116 | 2.4:-53864731 | MS.gene073428:CDS |
GTGGTCATAGCAGTTGTTGT+GGG | 0.493592 | 2.4:-53861923 | MS.gene073428:CDS |
GATGGTGCTATAGGAAACTT+TGG | 0.494854 | 2.4:-53866458 | MS.gene073428:CDS |
GTCTTGAAGGCTATATGTGC+TGG | 0.496137 | 2.4:-53863875 | MS.gene073428:CDS |
GTGAAAGGTGTTCAGTATAG+AGG | 0.496880 | 2.4:-53863040 | MS.gene073428:CDS |
GAGCCTCAAGTCTGTTTAAG+TGG | 0.501408 | 2.4:-53863836 | MS.gene073428:CDS |
TCACTTGTTTATCCTGAGAA+AGG | 0.503095 | 2.4:-53866404 | MS.gene073428:CDS |
TGCTAATGTAACTGCTTGCA+AGG | 0.503266 | 2.4:-53863223 | MS.gene073428:intron |
ACTATTGTTCTTCTTGATCG+TGG | 0.505839 | 2.4:-53866320 | MS.gene073428:CDS |
GATTTCTCTACTAATACTGA+TGG | 0.506816 | 2.4:+53865110 | None:intergenic |
TGTTCTACAAGTATAGACTA+AGG | 0.506946 | 2.4:-53861880 | MS.gene073428:CDS |
TTACATGGACTCAGAGATCA+TGG | 0.510252 | 2.4:-53861593 | MS.gene073428:CDS |
GCAAAATCCTTCTCTGGATC+CGG | 0.510988 | 2.4:+53864774 | None:intergenic |
CGATCAAGAAGAACAATAGT+AGG | 0.511281 | 2.4:+53866323 | None:intergenic |
GCTGCAGCTGTAAGAACACT+TGG | 0.511473 | 2.4:-53862147 | MS.gene073428:CDS |
CATGTATTTGCAGAAAGAAG+TGG | 0.520311 | 2.4:-53861974 | MS.gene073428:intron |
TTTACTAAGAATAGATTGGA+GGG | 0.522454 | 2.4:-53865042 | MS.gene073428:CDS |
TATCCTGAGAAAGGCTCTCA+TGG | 0.525339 | 2.4:-53866395 | MS.gene073428:CDS |
ACATTGTTCAAAACCAATGT+TGG | 0.525541 | 2.4:+53864199 | None:intergenic |
CTCAACAATGAAACCTTGCA+TGG | 0.531458 | 2.4:-53866591 | None:intergenic |
GACAAAATTAAGAAATGTGT+TGG | 0.536057 | 2.4:-53864464 | MS.gene073428:CDS |
CCAGTTGGATTTCACGGAGA+TGG | 0.536790 | 2.4:-53862331 | MS.gene073428:CDS |
GAACGAGAGTGGCCGTTCGT+GGG | 0.539483 | 2.4:-53864685 | MS.gene073428:CDS |
CTATCACCACATAAACTAAG+AGG | 0.541577 | 2.4:-53866488 | MS.gene073428:CDS |
GGTGTTCAGTATAGAGGTGA+TGG | 0.541704 | 2.4:-53863034 | MS.gene073428:CDS |
TGCTGAAGGATATGAAGGGA+AGG | 0.544900 | 2.4:-53864754 | MS.gene073428:CDS |
AGGAGGTCTTCTATATATGA+AGG | 0.544983 | 2.4:-53862101 | MS.gene073428:CDS |
TGAAAGAAACGGAGGATGCT+GGG | 0.549503 | 2.4:-53863256 | MS.gene073428:CDS |
ACAGTGACAACCATTTACCT+TGG | 0.554404 | 2.4:+53862354 | None:intergenic |
CAAAACCATGTTATATAGTG+TGG | 0.555176 | 2.4:+53864864 | None:intergenic |
TGTGGTCATAGCAGTTGTTG+TGG | 0.555649 | 2.4:-53861924 | MS.gene073428:CDS |
TCATGTTAGATGTTCCATGA+AGG | 0.556536 | 2.4:-53864637 | MS.gene073428:CDS |
TTTCTGAATAAAGGAATCCA+AGG | 0.556578 | 2.4:-53862371 | MS.gene073428:intron |
CGATGAGACTGAAACTTGAA+AGG | 0.557716 | 2.4:+53866347 | None:intergenic |
AATGGTTGTCACTGTCCAGT+TGG | 0.559053 | 2.4:-53862346 | MS.gene073428:CDS |
TTCTTTCAATGAATCACCAA+AGG | 0.559078 | 2.4:+53865088 | None:intergenic |
AACGAGTGTCTTGAAAGAAA+CGG | 0.560407 | 2.4:-53863267 | MS.gene073428:CDS |
TATGTCACAATACATGCCAC+TGG | 0.562076 | 2.4:-53861566 | MS.gene073428:CDS |
GCAAGATGTTCTTTAAACAA+TGG | 0.562595 | 2.4:-53862841 | MS.gene073428:CDS |
CTGCAGCTGTAAGAACACTT+GGG | 0.564075 | 2.4:-53862146 | MS.gene073428:CDS |
CATAGAGTAGCGAACGAGAG+TGG | 0.567502 | 2.4:-53864696 | MS.gene073428:CDS |
ATTATGGAGGGTATATTGTA+GGG | 0.569344 | 2.4:-53866427 | MS.gene073428:CDS |
TGGTGATCCTGAAGCTGATG+TGG | 0.575174 | 2.4:-53864444 | MS.gene073428:CDS |
GACACTCACAAACTCTTCCC+CGG | 0.576420 | 2.4:+53863068 | None:intergenic |
ATTGCCTTGTCGTAAAGGCT+CGG | 0.576661 | 2.4:+53861513 | None:intergenic |
ATTTCTCTACTAATACTGAT+GGG | 0.578474 | 2.4:+53865111 | None:intergenic |
TTTGGTATTCCAAATTATGG+AGG | 0.579193 | 2.4:-53866440 | MS.gene073428:CDS |
TTGGTATTCCAAATTATGGA+GGG | 0.579285 | 2.4:-53866439 | MS.gene073428:CDS |
AGTTATGATTGTAAGTGCAA+AGG | 0.580610 | 2.4:-53862121 | MS.gene073428:CDS |
AAGTGGTTCAAAATTTGGAA+AGG | 0.581324 | 2.4:-53861957 | MS.gene073428:CDS |
GATGGTAATAATAAATGTGA+AGG | 0.581927 | 2.4:-53862313 | MS.gene073428:intron |
AGATGTTCTTTAAACAATGG+AGG | 0.584241 | 2.4:-53862838 | MS.gene073428:CDS |
TCCACTCGATTATCAGGGTG+AGG | 0.587840 | 2.4:+53865011 | None:intergenic |
CTGTGCGCCGGATCCAGAGA+AGG | 0.590426 | 2.4:-53864781 | MS.gene073428:CDS |
AAAGATTGAACAAACATCAC+AGG | 0.597122 | 2.4:-53864408 | MS.gene073428:intron |
CCTCAAGTCTGTTTAAGTGG+AGG | 0.598734 | 2.4:-53863833 | MS.gene073428:intron |
GCTCAGATTCTTGAGAGAGG+TGG | 0.605027 | 2.4:-53864903 | MS.gene073428:CDS |
CAGATTGGAGGAGGATCTCG+TGG | 0.606613 | 2.4:-53864238 | MS.gene073428:CDS |
ATTGTTCTTCTTGATCGTGG+AGG | 0.607211 | 2.4:-53866317 | MS.gene073428:intron |
TGTGAGTGTCCTATTGTGAA+AGG | 0.607248 | 2.4:-53863055 | MS.gene073428:CDS |
CATATTCCACTCGATTATCA+GGG | 0.608794 | 2.4:+53865006 | None:intergenic |
TCACTCCACACTATATAACA+TGG | 0.609817 | 2.4:-53864869 | MS.gene073428:CDS |
AATCCCACCAAACCCACGAA+CGG | 0.618961 | 2.4:+53864673 | None:intergenic |
ACGAACAGCAACGACGAATG+TGG | 0.619268 | 2.4:-53864975 | MS.gene073428:CDS |
TATGATTGTAAGTGCAAAGG+AGG | 0.619599 | 2.4:-53862118 | MS.gene073428:CDS |
GTTCTACAAGTATAGACTAA+GGG | 0.621503 | 2.4:-53861879 | MS.gene073428:intron |
GCAGTACTGAACTGAACAAG+CGG | 0.622319 | 2.4:+53862780 | None:intergenic |
GATGGTTATACGACATGTGA+AGG | 0.625234 | 2.4:-53863016 | MS.gene073428:intron |
GAGGAAAGCAAAGATGCTGA+AGG | 0.636553 | 2.4:-53865155 | MS.gene073428:CDS |
GAATCCGAGCCTTTACGACA+AGG | 0.641114 | 2.4:-53861517 | MS.gene073428:CDS |
CATGCTCAGATTCTTGAGAG+AGG | 0.649472 | 2.4:-53864906 | MS.gene073428:CDS |
AAACGTGCTTGTCAATGTGA+TGG | 0.649602 | 2.4:-53862169 | MS.gene073428:CDS |
ACCTCACCCTGATAATCGAG+TGG | 0.649688 | 2.4:-53865012 | MS.gene073428:CDS |
ATTTGTCAGGATACTTTCCG+GGG | 0.653714 | 2.4:-53863085 | MS.gene073428:intron |
GATAACTATGGATTCTCCCG+AGG | 0.654495 | 2.4:-53865174 | MS.gene073428:CDS |
CCGGCGCACAGTATCTTCCG+TGG | 0.661230 | 2.4:+53864793 | None:intergenic |
CCACGGAAGATACTGTGCGC+CGG | 0.663423 | 2.4:-53864793 | MS.gene073428:CDS |
GTCAGCCACTAAAACTGCTG+CGG | 0.668621 | 2.4:+53865214 | None:intergenic |
TGCAGCTGTAAGAACACTTG+GGG | 0.674243 | 2.4:-53862145 | MS.gene073428:CDS |
CCTCCACTTAAACAGACTTG+AGG | 0.689799 | 2.4:+53863833 | None:intergenic |
AAGTCTCAATGTATAAACCA+CGG | 0.694947 | 2.4:-53864810 | MS.gene073428:CDS |
GAGTGTCTTGAAAGAAACGG+AGG | 0.703902 | 2.4:-53863264 | MS.gene073428:CDS |
AACAACTGCTATGACCACAA+AGG | 0.712302 | 2.4:+53861928 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTGGATTTAAAAAAAAAATT+TGG | + | chr2.4:53862772-53862791 | None:intergenic | 10.0% |
!!! | TTTTTAATTACTGATAAAAA+TGG | + | chr2.4:53862470-53862489 | None:intergenic | 10.0% |
!! | AAATTTATTAATAGCATGTA+AGG | + | chr2.4:53863975-53863994 | None:intergenic | 15.0% |
!! | CAAAAAATAAAAACAGATAT+AGG | + | chr2.4:53866473-53866492 | None:intergenic | 15.0% |
!! | GAAAAGAAAAATTATAATCT+TGG | + | chr2.4:53866098-53866117 | None:intergenic | 15.0% |
!! | TATATCAATTAAATCCTATA+AGG | + | chr2.4:53862020-53862039 | None:intergenic | 15.0% |
!!! | AACTAAAACAATTTTCAAAT+GGG | + | chr2.4:53862608-53862627 | None:intergenic | 15.0% |
!!! | AGAGAATAATTTTTTTTGTA+GGG | + | chr2.4:53865415-53865434 | None:intergenic | 15.0% |
!!! | TTGAATATTGAATTATTTTG+AGG | + | chr2.4:53864497-53864516 | None:intergenic | 15.0% |
!!! | TTTTTTTTAAATCCAAGTTT+TGG | - | chr2.4:53862776-53862795 | MS.gene073428:intron | 15.0% |
!! | AAAAAAGAACTCATATTACA+TGG | - | chr2.4:53865622-53865641 | MS.gene073428:intron | 20.0% |
!! | ACATATAGTTGAGAATAAAT+AGG | + | chr2.4:53866242-53866261 | None:intergenic | 20.0% |
!! | ATAAGATACGTTAATAAGAA+CGG | + | chr2.4:53864137-53864156 | None:intergenic | 20.0% |
!! | ATGCTAATAAACTAATTATG+TGG | + | chr2.4:53866437-53866456 | None:intergenic | 20.0% |
!! | TACAAAGTTAACAAAAAAAG+TGG | - | chr2.4:53864559-53864578 | MS.gene073428:intron | 20.0% |
!! | TATATCTGTGAATCATATAA+AGG | - | chr2.4:53862218-53862237 | MS.gene073428:intron | 20.0% |
!! | TATTCACTAGACATATATAA+TGG | - | chr2.4:53864940-53864959 | MS.gene073428:CDS | 20.0% |
!! | TATTTATTGAACTACATTCT+TGG | - | chr2.4:53865670-53865689 | MS.gene073428:intron | 20.0% |
!! | TTCAATATGTATTTGATAGA+TGG | - | chr2.4:53863935-53863954 | MS.gene073428:intron | 20.0% |
!!! | AAGTTTTACTAAGAATAGAT+TGG | - | chr2.4:53863045-53863064 | MS.gene073428:CDS | 20.0% |
!!! | AATAAAATGACTAGTCTTAA+TGG | - | chr2.4:53862729-53862748 | MS.gene073428:intron | 20.0% |
!!! | AATAACTGCATTTAAAATCT+AGG | + | chr2.4:53866284-53866303 | None:intergenic | 20.0% |
!!! | AATTTTGTGAAGAATTTCAA+GGG | - | chr2.4:53863161-53863180 | MS.gene073428:intron | 20.0% |
!!! | ACTAAAACAATTTTCAAATG+GGG | + | chr2.4:53862607-53862626 | None:intergenic | 20.0% |
!!! | AGTGAATAGTAATTATGTTT+TGG | + | chr2.4:53864928-53864947 | None:intergenic | 20.0% |
!!! | ATTTTGTTTGATTTGTCTAA+AGG | - | chr2.4:53864174-53864193 | MS.gene073428:intron | 20.0% |
!!! | CAACTAAAACAATTTTCAAA+TGG | + | chr2.4:53862609-53862628 | None:intergenic | 20.0% |
!!! | GAGAGAATAATTTTTTTTGT+AGG | + | chr2.4:53865416-53865435 | None:intergenic | 20.0% |
!!! | GATTCTTTTAGTTGAAAATA+TGG | - | chr2.4:53864324-53864343 | MS.gene073428:intron | 20.0% |
!!! | GGAATTACAGAAAATTTTAT+AGG | + | chr2.4:53862334-53862353 | None:intergenic | 20.0% |
!!! | TATGTGGTTTTAACTTTTAA+TGG | + | chr2.4:53866421-53866440 | None:intergenic | 20.0% |
!!! | TGAACATTTTATTATTTGTC+AGG | - | chr2.4:53864993-53865012 | MS.gene073428:CDS | 20.0% |
!!! | TTATGTTTTGGAAGAAAAAT+TGG | + | chr2.4:53864916-53864935 | None:intergenic | 20.0% |
!!! | TTATTTTTTGTAGTCTTACA+TGG | - | chr2.4:53866483-53866502 | MS.gene073428:CDS | 20.0% |
! | AAACTGTTGTAAGCAAATAA+AGG | - | chr2.4:53863755-53863774 | MS.gene073428:intron | 25.0% |
! | AACTTTGGTATTCCAAATTA+TGG | - | chr2.4:53861648-53861667 | MS.gene073428:intron | 25.0% |
! | AAGATGATATCAAAGACTAA+CGG | - | chr2.4:53865540-53865559 | MS.gene073428:intron | 25.0% |
! | AATCAAAGACAAAAGAAAAG+TGG | - | chr2.4:53864523-53864542 | MS.gene073428:intron | 25.0% |
! | ATATAGTGTATGAGAATTTG+AGG | - | chr2.4:53863360-53863379 | MS.gene073428:intron | 25.0% |
! | ATTTCTCTACTAATACTGAT+GGG | + | chr2.4:53862983-53863002 | None:intergenic | 25.0% |
! | GACAAAATTAAGAAATGTGT+TGG | - | chr2.4:53863627-53863646 | MS.gene073428:intron | 25.0% |
! | GATGGTAATAATAAATGTGA+AGG | - | chr2.4:53865778-53865797 | MS.gene073428:intron | 25.0% |
! | GGATTTAATTGATATATCCA+TGG | - | chr2.4:53862024-53862043 | MS.gene073428:intron | 25.0% |
! | GTAAATATGCATTGAATATG+TGG | + | chr2.4:53866329-53866348 | None:intergenic | 25.0% |
! | TAACTAATCTCAGCATATAT+AGG | + | chr2.4:53861994-53862013 | None:intergenic | 25.0% |
! | TGTAAGATATTGAATAACCA+TGG | - | chr2.4:53864734-53864753 | MS.gene073428:CDS | 25.0% |
! | TTTACTAAGAATAGATTGGA+GGG | - | chr2.4:53863049-53863068 | MS.gene073428:CDS | 25.0% |
! | TTTATTTGCTTACAACAGTT+TGG | + | chr2.4:53863756-53863775 | None:intergenic | 25.0% |
!! | AGATTTTCCTTTCTGAATAA+AGG | - | chr2.4:53865711-53865730 | MS.gene073428:intron | 25.0% |
!! | CATTGAATATGTGGTTTTTA+GGG | + | chr2.4:53866320-53866339 | None:intergenic | 25.0% |
!! | CATTTCTTAATTTTGTCAAG+AGG | + | chr2.4:53863624-53863643 | None:intergenic | 25.0% |
!! | GAATTTTGTGAAGAATTTCA+AGG | - | chr2.4:53863160-53863179 | MS.gene073428:intron | 25.0% |
!! | GTGTAATATGAGTACTTTTA+TGG | - | chr2.4:53865382-53865401 | MS.gene073428:intron | 25.0% |
!! | TGATTTGTCTAAAGGAAAAT+TGG | - | chr2.4:53864182-53864201 | MS.gene073428:intron | 25.0% |
!! | TTTTACTAAGAATAGATTGG+AGG | - | chr2.4:53863048-53863067 | MS.gene073428:CDS | 25.0% |
!! | TTTTTACCTCTTAGTTTATG+TGG | + | chr2.4:53861612-53861631 | None:intergenic | 25.0% |
!!! | ATTCTTTATTTGACAGCTTT+TGG | - | chr2.4:53865223-53865242 | MS.gene073428:CDS | 25.0% |
!!! | TACTGACTTTATTCTTGTTT+TGG | - | chr2.4:53864782-53864801 | MS.gene073428:CDS | 25.0% |
!!! | TACTTTTAAAGTCACACATA+CGG | - | chr2.4:53862123-53862142 | MS.gene073428:CDS | 25.0% |
!!! | TTAAAGACTTTTGACTTTCA+TGG | - | chr2.4:53862096-53862115 | MS.gene073428:CDS | 25.0% |
!!! | TTCATCAAAATTTGATGATG+CGG | - | chr2.4:53865459-53865478 | MS.gene073428:intron | 25.0% |
AAACTAAGAGGTAAAAACGA+TGG | - | chr2.4:53861615-53861634 | MS.gene073428:intron | 30.0% | |
AAAGATTGAACAAACATCAC+AGG | - | chr2.4:53863683-53863702 | MS.gene073428:intron | 30.0% | |
AACATTAAATTAGCATGTGC+AGG | + | chr2.4:53861889-53861908 | None:intergenic | 30.0% | |
AAGAAGGAAAACTGAAGATT+TGG | + | chr2.4:53865341-53865360 | None:intergenic | 30.0% | |
AAGGAACAAGATATGTGTAT+TGG | - | chr2.4:53866009-53866028 | MS.gene073428:intron | 30.0% | |
AAGTCTCAATGTATAAACCA+CGG | - | chr2.4:53863281-53863300 | MS.gene073428:CDS | 30.0% | |
AAGTGGTTCAAAATTTGGAA+AGG | - | chr2.4:53866134-53866153 | MS.gene073428:intron | 30.0% | |
ACAATAACAATACATGCTAG+TGG | + | chr2.4:53864717-53864736 | None:intergenic | 30.0% | |
ACAATATACCCTCCATAATT+TGG | + | chr2.4:53861663-53861682 | None:intergenic | 30.0% | |
ACATTGTTCAAAACCAATGT+TGG | + | chr2.4:53863895-53863914 | None:intergenic | 30.0% | |
AGATCAATTCCAATGACAAA+TGG | - | chr2.4:53862666-53862685 | MS.gene073428:intron | 30.0% | |
AGATGTTCTTTAAACAATGG+AGG | - | chr2.4:53865253-53865272 | MS.gene073428:CDS | 30.0% | |
AGGAGAAGATTTGAATTACA+GGG | - | chr2.4:53865563-53865582 | MS.gene073428:intron | 30.0% | |
AGTTATGATTGTAAGTGCAA+AGG | - | chr2.4:53865970-53865989 | MS.gene073428:intron | 30.0% | |
ATAAAGGAATCCAAGGTAAA+TGG | - | chr2.4:53865727-53865746 | MS.gene073428:intron | 30.0% | |
ATAATATGTTTGCTTCCAAG+AGG | + | chr2.4:53862646-53862665 | None:intergenic | 30.0% | |
CAAAACCATGTTATATAGTG+TGG | + | chr2.4:53863230-53863249 | None:intergenic | 30.0% | |
CAAGGTAACGATTGTTTAAA+CGG | - | chr2.4:53862048-53862067 | MS.gene073428:intron | 30.0% | |
CAATTCACAATGCTCAAAAT+AGG | + | chr2.4:53864373-53864392 | None:intergenic | 30.0% | |
GAAAGAAGTGGTTCAAAATT+TGG | - | chr2.4:53866129-53866148 | MS.gene073428:intron | 30.0% | |
GAAGTTGTCATGAAATCATT+AGG | - | chr2.4:53863503-53863522 | MS.gene073428:intron | 30.0% | |
GAGAATCTAAAAAAAGCTCT+AGG | - | chr2.4:53865587-53865606 | MS.gene073428:intron | 30.0% | |
GATTTCTCTACTAATACTGA+TGG | + | chr2.4:53862984-53863003 | None:intergenic | 30.0% | |
GCAAGATGTTCTTTAAACAA+TGG | - | chr2.4:53865250-53865269 | MS.gene073428:CDS | 30.0% | |
GGAGGAAAGGTAATAAAAAT+AGG | + | chr2.4:53862355-53862374 | None:intergenic | 30.0% | |
GGCTATAAAGAAATCCTATA+CGG | + | chr2.4:53862313-53862332 | None:intergenic | 30.0% | |
GTATTAGTAGAGAAATCCTT+TGG | - | chr2.4:53862987-53863006 | MS.gene073428:intron | 30.0% | |
GTTCTACAAGTATAGACTAA+GGG | - | chr2.4:53866212-53866231 | MS.gene073428:intron | 30.0% | |
TATCGGGATAAAAGAAAAGA+AGG | + | chr2.4:53865357-53865376 | None:intergenic | 30.0% | |
TCAATAAGCATTCCAAAACT+TGG | + | chr2.4:53862791-53862810 | None:intergenic | 30.0% | |
TCCAATCTGTAAAACACAAA+TGG | + | chr2.4:53863842-53863861 | None:intergenic | 30.0% | |
TGTTCTACAAGTATAGACTA+AGG | - | chr2.4:53866211-53866230 | MS.gene073428:intron | 30.0% | |
TTAATGGAAAAGTCACTCAA+AGG | - | chr2.4:53862745-53862764 | MS.gene073428:intron | 30.0% | |
TTATTTGTCAGGATACTTTC+CGG | - | chr2.4:53865004-53865023 | MS.gene073428:CDS | 30.0% | |
TTCTTTCAATGAATCACCAA+AGG | + | chr2.4:53863006-53863025 | None:intergenic | 30.0% | |
TTGGATTCCTTTATTCAGAA+AGG | + | chr2.4:53865721-53865740 | None:intergenic | 30.0% | |
TTGGTATTCCAAATTATGGA+GGG | - | chr2.4:53861652-53861671 | MS.gene073428:intron | 30.0% | |
TTGTTTAAAGAACATCTTGC+TGG | + | chr2.4:53865250-53865269 | None:intergenic | 30.0% | |
TTTCATATACTTCTGTCGAT+TGG | - | chr2.4:53863536-53863555 | MS.gene073428:intron | 30.0% | |
TTTCGCAGACAATTATCAAA+TGG | - | chr2.4:53862435-53862454 | MS.gene073428:intron | 30.0% | |
TTTCTGAATAAAGGAATCCA+AGG | - | chr2.4:53865720-53865739 | MS.gene073428:intron | 30.0% | |
TTTCTTACTCATTTCCGTAT+AGG | - | chr2.4:53862296-53862315 | MS.gene073428:intron | 30.0% | |
TTTGAGTAGAGTAATTCAGA+AGG | + | chr2.4:53865105-53865124 | None:intergenic | 30.0% | |
TTTGGTATTCCAAATTATGG+AGG | - | chr2.4:53861651-53861670 | MS.gene073428:intron | 30.0% | |
! | AAAATGATAAGCTACTTTCC+TGG | - | chr2.4:53865178-53865197 | MS.gene073428:CDS | 30.0% |
! | AAACAATTTTCAAATGGGGT+TGG | + | chr2.4:53862603-53862622 | None:intergenic | 30.0% |
! | AATTATGGAGGGTATATTGT+AGG | - | chr2.4:53861663-53861682 | MS.gene073428:intron | 30.0% |
! | ATTATGGAGGGTATATTGTA+GGG | - | chr2.4:53861664-53861683 | MS.gene073428:intron | 30.0% |
! | ATTCCAATGACAAATGGTTT+TGG | - | chr2.4:53862672-53862691 | MS.gene073428:intron | 30.0% |
! | ATTTGTGTTTTACAGATTGG+AGG | - | chr2.4:53863841-53863860 | MS.gene073428:CDS | 30.0% |
! | ATTTTGCTGAAGGATATGAA+GGG | - | chr2.4:53863333-53863352 | MS.gene073428:intron | 30.0% |
! | GCATTGAATATGTGGTTTTT+AGG | + | chr2.4:53866321-53866340 | None:intergenic | 30.0% |
! | TCCATTTGTGTTTTACAGAT+TGG | - | chr2.4:53863838-53863857 | MS.gene073428:CDS | 30.0% |
! | TTCTTTTCTTTTATCCCGAT+AGG | - | chr2.4:53865356-53865375 | MS.gene073428:intron | 30.0% |
! | TTGTCATTTGTGTAATGTAG+TGG | - | chr2.4:53864063-53864082 | MS.gene073428:intron | 30.0% |
!! | CATGAACTACATTATTTTGC+TGG | + | chr2.4:53866552-53866571 | None:intergenic | 30.0% |
!! | GAGATTAGTTATAGCCTTAT+AGG | - | chr2.4:53862003-53862022 | MS.gene073428:intron | 30.0% |
!! | TGTTGCTTTGATGATAGAAT+TGG | - | chr2.4:53862251-53862270 | MS.gene073428:intron | 30.0% |
!!! | CTTGTTTTTTTAGTCAACCT+TGG | - | chr2.4:53861812-53861831 | MS.gene073428:intron | 30.0% |
AAAGACAAAAGAAAAGTGGC+TGG | - | chr2.4:53864527-53864546 | MS.gene073428:intron | 35.0% | |
AACGAGTGTCTTGAAAGAAA+CGG | - | chr2.4:53864824-53864843 | MS.gene073428:CDS | 35.0% | |
AAGAAAGTCAACGATAACCA+AGG | + | chr2.4:53861832-53861851 | None:intergenic | 35.0% | |
AATTGATATATCCATGGCCA+AGG | - | chr2.4:53862030-53862049 | MS.gene073428:intron | 35.0% | |
ACAAAGAGAAAAACCATGCA+AGG | + | chr2.4:53861516-53861535 | None:intergenic | 35.0% | |
ACTATTGTTCTTCTTGATCG+TGG | - | chr2.4:53861771-53861790 | MS.gene073428:intron | 35.0% | |
AGGAGGTCTTCTATATATGA+AGG | - | chr2.4:53865990-53866009 | MS.gene073428:intron | 35.0% | |
ATCAGGTAGTGACTGATAAT+AGG | + | chr2.4:53865148-53865167 | None:intergenic | 35.0% | |
ATGATATCAAAGACTAACGG+AGG | - | chr2.4:53865543-53865562 | MS.gene073428:intron | 35.0% | |
CAAAACCAATGTTGGCAAAA+TGG | + | chr2.4:53863887-53863906 | None:intergenic | 35.0% | |
CAACCAAAACCATTTGTCAT+TGG | + | chr2.4:53862678-53862697 | None:intergenic | 35.0% | |
CATATTCCACTCGATTATCA+GGG | + | chr2.4:53863088-53863107 | None:intergenic | 35.0% | |
CATGTATTTGCAGAAAGAAG+TGG | - | chr2.4:53866117-53866136 | MS.gene073428:intron | 35.0% | |
CGATCAAGAAGAACAATAGT+AGG | + | chr2.4:53861771-53861790 | None:intergenic | 35.0% | |
CGCGTATAATCAAATTTGGA+TGG | - | chr2.4:53865516-53865535 | MS.gene073428:intron | 35.0% | |
CGTTTAAACAATCGTTACCT+TGG | + | chr2.4:53862050-53862069 | None:intergenic | 35.0% | |
CTATCACCACATAAACTAAG+AGG | - | chr2.4:53861603-53861622 | MS.gene073428:intron | 35.0% | |
CTCATATTACACAGACCTAT+CGG | + | chr2.4:53865374-53865393 | None:intergenic | 35.0% | |
CTGCTTGCAAGGTATATATA+AGG | - | chr2.4:53864879-53864898 | MS.gene073428:CDS | 35.0% | |
CTTTAAACAATGGAGGTTGT+TGG | - | chr2.4:53865260-53865279 | MS.gene073428:CDS | 35.0% | |
GAAGTAACTAACCTCTATAC+TGG | + | chr2.4:53863918-53863937 | None:intergenic | 35.0% | |
GAATGAGTCATGATTCATCA+TGG | - | chr2.4:53864619-53864638 | MS.gene073428:CDS | 35.0% | |
GAGGAGAAGATTTGAATTAC+AGG | - | chr2.4:53865562-53865581 | MS.gene073428:intron | 35.0% | |
GTCACGCGTATAATCAAATT+TGG | - | chr2.4:53865512-53865531 | MS.gene073428:intron | 35.0% | |
GTTGAGGTTGAAATCAAAGT+CGG | + | chr2.4:53864106-53864125 | None:intergenic | 35.0% | |
TAAACAACATATCAGCAACC+AGG | + | chr2.4:53865199-53865218 | None:intergenic | 35.0% | |
TAAACAGAAACGAATCCCTA+CGG | + | chr2.4:53864668-53864687 | None:intergenic | 35.0% | |
TACAAGGTTAAACTCAACGA+GGG | + | chr2.4:53862390-53862409 | None:intergenic | 35.0% | |
TACTGAACACCTTTCACAAT+AGG | + | chr2.4:53865048-53865067 | None:intergenic | 35.0% | |
TAGTGACTGATAATAGGAAG+AGG | + | chr2.4:53865142-53865161 | None:intergenic | 35.0% | |
TATGATTGTAAGTGCAAAGG+AGG | - | chr2.4:53865973-53865992 | MS.gene073428:intron | 35.0% | |
TATTTGTCAGGATACTTTCC+GGG | - | chr2.4:53865005-53865024 | MS.gene073428:CDS | 35.0% | |
TCACTCCACACTATATAACA+TGG | - | chr2.4:53863222-53863241 | MS.gene073428:intron | 35.0% | |
TCACTTGTTTATCCTGAGAA+AGG | - | chr2.4:53861687-53861706 | MS.gene073428:intron | 35.0% | |
TCATATTACACAGACCTATC+GGG | + | chr2.4:53865373-53865392 | None:intergenic | 35.0% | |
TCATATTCCACTCGATTATC+AGG | + | chr2.4:53863089-53863108 | None:intergenic | 35.0% | |
TCATGTTAGATGTTCCATGA+AGG | - | chr2.4:53863454-53863473 | MS.gene073428:intron | 35.0% | |
TGATGAGTCACTGATAACTA+TGG | - | chr2.4:53862905-53862924 | MS.gene073428:intron | 35.0% | |
TTACAAGGTTAAACTCAACG+AGG | + | chr2.4:53862391-53862410 | None:intergenic | 35.0% | |
TTAGCCACACTAAGTTTATG+TGG | - | chr2.4:53864582-53864601 | MS.gene073428:intron | 35.0% | |
TTCACCACATAAACTTAGTG+TGG | + | chr2.4:53864589-53864608 | None:intergenic | 35.0% | |
TTGAACAATGTCCAGTATAG+AGG | - | chr2.4:53863904-53863923 | MS.gene073428:intron | 35.0% | |
TTGAACTACATTCTTGGACT+TGG | - | chr2.4:53865676-53865695 | MS.gene073428:intron | 35.0% | |
! | CTTTGTCGTTTGTAGTTACA+AGG | + | chr2.4:53862406-53862425 | None:intergenic | 35.0% |
! | GATTTTGCTGAAGGATATGA+AGG | - | chr2.4:53863332-53863351 | MS.gene073428:intron | 35.0% |
! | GTCTATTGTGTTTCTGTGAT+TGG | - | chr2.4:53864962-53864981 | MS.gene073428:CDS | 35.0% |
! | GTTATTTCGCCTTAAAGGTA+TGG | - | chr2.4:53862835-53862854 | MS.gene073428:CDS | 35.0% |
!! | AGAGTGTTATTTCGCCTTAA+AGG | - | chr2.4:53862830-53862849 | MS.gene073428:CDS | 35.0% |
!! | GTTGTTATTGATTAGCCTCT+TGG | - | chr2.4:53862628-53862647 | MS.gene073428:intron | 35.0% |
!! | TCATTTTGAGTAGAGCAATC+AGG | + | chr2.4:53865165-53865184 | None:intergenic | 35.0% |
!!! | CAAATGGTTTTGGTTGTTGT+CGG | - | chr2.4:53862682-53862701 | MS.gene073428:intron | 35.0% |
!!! | GCTGTATTTTTTCTCCTTCA+TGG | + | chr2.4:53863471-53863490 | None:intergenic | 35.0% |
AAACGTGCTTGTCAATGTGA+TGG | - | chr2.4:53865922-53865941 | MS.gene073428:intron | 40.0% | |
AACAACTGCTATGACCACAA+AGG | + | chr2.4:53866166-53866185 | None:intergenic | 40.0% | |
AAGAACGGTTGTCTAAGTTG+AGG | + | chr2.4:53864122-53864141 | None:intergenic | 40.0% | |
AAGTCTGTTTAAGTGGAGGT+TGG | - | chr2.4:53864262-53864281 | MS.gene073428:intron | 40.0% | |
ACAAGGTTAAACTCAACGAG+GGG | + | chr2.4:53862389-53862408 | None:intergenic | 40.0% | |
ACAGTGACAACCATTTACCT+TGG | + | chr2.4:53865740-53865759 | None:intergenic | 40.0% | |
AGTATCACTCCCACAAAAGA+TGG | + | chr2.4:53864766-53864785 | None:intergenic | 40.0% | |
ATCGAGTGGAATATGAGTTC+TGG | - | chr2.4:53863093-53863112 | MS.gene073428:intron | 40.0% | |
ATTGTTCTTCTTGATCGTGG+AGG | - | chr2.4:53861774-53861793 | MS.gene073428:intron | 40.0% | |
ATTTGTCAGGATACTTTCCG+GGG | - | chr2.4:53865006-53865025 | MS.gene073428:CDS | 40.0% | |
CATGGTTGTCAAGTCTTTGA+AGG | - | chr2.4:53861714-53861733 | MS.gene073428:intron | 40.0% | |
CGATGAGACTGAAACTTGAA+AGG | + | chr2.4:53861747-53861766 | None:intergenic | 40.0% | |
CTGCTTTCAACAAATGGCTT+TGG | + | chr2.4:53863254-53863273 | None:intergenic | 40.0% | |
CTTCATAGCAGCTATGTTCA+AGG | - | chr2.4:53861546-53861565 | MS.gene073428:CDS | 40.0% | |
GATGGTTATACGACATGTGA+AGG | - | chr2.4:53865075-53865094 | MS.gene073428:CDS | 40.0% | |
GGCTATATGTGCTGGATTTA+AGG | - | chr2.4:53864224-53864243 | MS.gene073428:CDS | 40.0% | |
GGTAGAGAAAAACAGCATCA+CGG | - | chr2.4:53861578-53861597 | MS.gene073428:CDS | 40.0% | |
TACACATTGCCTTGTCGTAA+AGG | + | chr2.4:53866586-53866605 | None:intergenic | 40.0% | |
TATGTCACAATACATGCCAC+TGG | - | chr2.4:53866525-53866544 | MS.gene073428:CDS | 40.0% | |
TGCTAATGTAACTGCTTGCA+AGG | - | chr2.4:53864868-53864887 | MS.gene073428:CDS | 40.0% | |
TGTGAGTGTCCTATTGTGAA+AGG | - | chr2.4:53865036-53865055 | MS.gene073428:CDS | 40.0% | |
TTACATGGACTCAGAGATCA+TGG | - | chr2.4:53866498-53866517 | MS.gene073428:CDS | 40.0% | |
TTCAGCATCTTTGCTTTCCT+CGG | + | chr2.4:53862937-53862956 | None:intergenic | 40.0% | |
TTGAGCATGCCATACCTTTA+AGG | + | chr2.4:53862847-53862866 | None:intergenic | 40.0% | |
! | ACAAAAGATGGTTTGGACCA+TGG | + | chr2.4:53864754-53864773 | None:intergenic | 40.0% |
! | ATGGTCCAAACCATCTTTTG+TGG | - | chr2.4:53864753-53864772 | MS.gene073428:CDS | 40.0% |
! | CACTGACTGCTTTCAACAAA+TGG | + | chr2.4:53863260-53863279 | None:intergenic | 40.0% |
! | TGGTCCAAACCATCTTTTGT+GGG | - | chr2.4:53864754-53864773 | MS.gene073428:CDS | 40.0% |
! | TGTCACCATTTTGCCAACAT+TGG | - | chr2.4:53863879-53863898 | MS.gene073428:CDS | 40.0% |
! | TGTGTTTTACAGATTGGAGG+AGG | - | chr2.4:53863844-53863863 | MS.gene073428:CDS | 40.0% |
!! | ACATTATTTTGCTGGTCCAG+TGG | + | chr2.4:53866544-53866563 | None:intergenic | 40.0% |
!! | CTATGTTCAAGGTCGTTTTG+TGG | - | chr2.4:53861557-53861576 | MS.gene073428:CDS | 40.0% |
!! | GATGGTGCTATAGGAAACTT+TGG | - | chr2.4:53861633-53861652 | MS.gene073428:intron | 40.0% |
!! | GGTAAAAACGATGGTGCTAT+AGG | - | chr2.4:53861624-53861643 | MS.gene073428:intron | 40.0% |
!! | GTGAAAGGTGTTCAGTATAG+AGG | - | chr2.4:53865051-53865070 | MS.gene073428:CDS | 40.0% |
AACAATCGTTACCTTGGCCA+TGG | + | chr2.4:53862044-53862063 | None:intergenic | 45.0% | |
AATGGTTGTCACTGTCCAGT+TGG | - | chr2.4:53865745-53865764 | MS.gene073428:intron | 45.0% | |
ACATTCTTGGACTTGGCTCA+AGG | - | chr2.4:53865683-53865702 | MS.gene073428:intron | 45.0% | |
ATTGCCTTGTCGTAAAGGCT+CGG | + | chr2.4:53866581-53866600 | None:intergenic | 45.0% | |
CACTCCCACAAAAGATGGTT+TGG | + | chr2.4:53864761-53864780 | None:intergenic | 45.0% | |
CACTGTCCAGTTGGATTTCA+CGG | - | chr2.4:53865754-53865773 | MS.gene073428:intron | 45.0% | |
CATGCTCAGATTCTTGAGAG+AGG | - | chr2.4:53863185-53863204 | MS.gene073428:intron | 45.0% | |
CCCAAAATAGATACGCCGTA+GGG | - | chr2.4:53864650-53864669 | MS.gene073428:CDS | 45.0% | |
CCTCAAGTCTGTTTAAGTGG+AGG | - | chr2.4:53864258-53864277 | MS.gene073428:intron | 45.0% | |
CCTCCACTTAAACAGACTTG+AGG | + | chr2.4:53864261-53864280 | None:intergenic | 45.0% | |
CCTTCAGCAAAATCCTTCTC+TGG | + | chr2.4:53863326-53863345 | None:intergenic | 45.0% | |
CTGCAGCTGTAAGAACACTT+GGG | - | chr2.4:53865945-53865964 | MS.gene073428:intron | 45.0% | |
GAGCCTCAAGTCTGTTTAAG+TGG | - | chr2.4:53864255-53864274 | MS.gene073428:intron | 45.0% | |
GAGGAAAGCAAAGATGCTGA+AGG | - | chr2.4:53862936-53862955 | MS.gene073428:intron | 45.0% | |
GAGTGTCTTGAAAGAAACGG+AGG | - | chr2.4:53864827-53864846 | MS.gene073428:CDS | 45.0% | |
GATAACTATGGATTCTCCCG+AGG | - | chr2.4:53862917-53862936 | MS.gene073428:intron | 45.0% | |
GCAAAATCCTTCTCTGGATC+CGG | + | chr2.4:53863320-53863339 | None:intergenic | 45.0% | |
GGAGAGAACATCTGTCTTGA+AGG | - | chr2.4:53864203-53864222 | MS.gene073428:CDS | 45.0% | |
GGTCAGTTTGTAAGGAGGAA+AGG | + | chr2.4:53862368-53862387 | None:intergenic | 45.0% | |
GGTGTTCAGTATAGAGGTGA+TGG | - | chr2.4:53865057-53865076 | MS.gene073428:CDS | 45.0% | |
GGTTGAAATCAAAGTCGGAG+TGG | + | chr2.4:53864101-53864120 | None:intergenic | 45.0% | |
GTCTTGAAGGCTATATGTGC+TGG | - | chr2.4:53864216-53864235 | MS.gene073428:CDS | 45.0% | |
GTGGTCATAGCAGTTGTTGT+GGG | - | chr2.4:53866168-53866187 | MS.gene073428:intron | 45.0% | |
TAAAAGAGCCACATGGACAG+TGG | - | chr2.4:53865483-53865502 | MS.gene073428:intron | 45.0% | |
TATCCTGAGAAAGGCTCTCA+TGG | - | chr2.4:53861696-53861715 | MS.gene073428:intron | 45.0% | |
TCAGCATCTTTGCTTTCCTC+GGG | + | chr2.4:53862936-53862955 | None:intergenic | 45.0% | |
TCATTCTCCACATCAGCTTC+AGG | + | chr2.4:53863657-53863676 | None:intergenic | 45.0% | |
TGAAAGAAACGGAGGATGCT+GGG | - | chr2.4:53864835-53864854 | MS.gene073428:CDS | 45.0% | |
TGCAGCTGTAAGAACACTTG+GGG | - | chr2.4:53865946-53865965 | MS.gene073428:intron | 45.0% | |
TGCTGAAGGATATGAAGGGA+AGG | - | chr2.4:53863337-53863356 | MS.gene073428:intron | 45.0% | |
TGGAAAGGTCATTGCCTTTG+TGG | - | chr2.4:53866149-53866168 | MS.gene073428:intron | 45.0% | |
TGTGGTCATAGCAGTTGTTG+TGG | - | chr2.4:53866167-53866186 | MS.gene073428:intron | 45.0% | |
TTGAAAGAAACGGAGGATGC+TGG | - | chr2.4:53864834-53864853 | MS.gene073428:CDS | 45.0% | |
! | CCAGAGAAGGATTTTGCTGA+AGG | - | chr2.4:53863323-53863342 | MS.gene073428:intron | 45.0% |
! | CCCTACGGCGTATCTATTTT+GGG | + | chr2.4:53864653-53864672 | None:intergenic | 45.0% |
! | GCAGTACTGAACTGAACAAG+CGG | + | chr2.4:53865314-53865333 | None:intergenic | 45.0% |
! | TCCCTACGGCGTATCTATTT+TGG | + | chr2.4:53864654-53864673 | None:intergenic | 45.0% |
!! | AACTTTTAATGGCTCTGCCG+CGG | + | chr2.4:53866410-53866429 | None:intergenic | 45.0% |
!! | TTTGGTTGTTGTCGGTGTCA+CGG | - | chr2.4:53862690-53862709 | MS.gene073428:intron | 45.0% |
!!! | TTTTTTTTTTTTTTTTTTGT+TGG | - | chr2.4:53861968-53861987 | MS.gene073428:intron | 5.0% |
AATCCCACCAAACCCACGAA+CGG | + | chr2.4:53863421-53863440 | None:intergenic | 50.0% | |
ACCTCACCCTGATAATCGAG+TGG | - | chr2.4:53863079-53863098 | MS.gene073428:CDS | 50.0% | |
ACGAACAGCAACGACGAATG+TGG | - | chr2.4:53863116-53863135 | MS.gene073428:intron | 50.0% | |
ATAGCAGTTGTTGTGGGAGC+TGG | - | chr2.4:53866174-53866193 | MS.gene073428:intron | 50.0% | |
ATGCGGCTAAAAGAGCCACA+TGG | - | chr2.4:53865476-53865495 | MS.gene073428:intron | 50.0% | |
CAACCATGAGAGCCTTTCTC+AGG | + | chr2.4:53861702-53861721 | None:intergenic | 50.0% | |
CAACGAGGGGTCAGTTTGTA+AGG | + | chr2.4:53862376-53862395 | None:intergenic | 50.0% | |
CATAGAGTAGCGAACGAGAG+TGG | - | chr2.4:53863395-53863414 | MS.gene073428:intron | 50.0% | |
CCAGTTGGATTTCACGGAGA+TGG | - | chr2.4:53865760-53865779 | MS.gene073428:intron | 50.0% | |
CCATCTCCGTGAAATCCAAC+TGG | + | chr2.4:53865763-53865782 | None:intergenic | 50.0% | |
GAATCCGAGCCTTTACGACA+AGG | - | chr2.4:53866574-53866593 | MS.gene073428:CDS | 50.0% | |
GACACTCACAAACTCTTCCC+CGG | + | chr2.4:53865026-53865045 | None:intergenic | 50.0% | |
GCCCAAAATAGATACGCCGT+AGG | - | chr2.4:53864649-53864668 | MS.gene073428:CDS | 50.0% | |
GCTACAGAGAATGTGGTCCA+CGG | + | chr2.4:53866371-53866390 | None:intergenic | 50.0% | |
GCTCAGATTCTTGAGAGAGG+TGG | - | chr2.4:53863188-53863207 | MS.gene073428:intron | 50.0% | |
GCTGCAGCTGTAAGAACACT+TGG | - | chr2.4:53865944-53865963 | MS.gene073428:intron | 50.0% | |
GGCATTCGCTACAGAGAATG+TGG | + | chr2.4:53866378-53866397 | None:intergenic | 50.0% | |
GTATGGCATGCTCAACTAGC+TGG | - | chr2.4:53862852-53862871 | MS.gene073428:CDS | 50.0% | |
GTCAGCCACTAAAACTGCTG+CGG | + | chr2.4:53862880-53862899 | None:intergenic | 50.0% | |
TCCACTCGATTATCAGGGTG+AGG | + | chr2.4:53863083-53863102 | None:intergenic | 50.0% | |
TCTCTGTAGCGAATGCCCAA+TGG | - | chr2.4:53866381-53866400 | MS.gene073428:CDS | 50.0% | |
TGGTGATCCTGAAGCTGATG+TGG | - | chr2.4:53863647-53863666 | MS.gene073428:intron | 50.0% | |
ACAGAGAATGTGGTCCACGG+CGG | + | chr2.4:53866368-53866387 | None:intergenic | 55.0% | |
CAGATTGGAGGAGGATCTCG+TGG | - | chr2.4:53863853-53863872 | MS.gene073428:CDS | 55.0% | |
CGAGGGGTCAGTTTGTAAGG+AGG | + | chr2.4:53862373-53862392 | None:intergenic | 55.0% | |
CGGCGGTAATTGCAGTCACA+AGG | + | chr2.4:53866351-53866370 | None:intergenic | 55.0% | |
TGTGACTGCAATTACCGCCG+TGG | - | chr2.4:53866351-53866370 | MS.gene073428:CDS | 55.0% | |
!! | TGGAGCCGCAGCAGTTTTAG+TGG | - | chr2.4:53862872-53862891 | MS.gene073428:intron | 55.0% |
AGAGTGGCCGTTCGTGGGTT+TGG | - | chr2.4:53863411-53863430 | MS.gene073428:intron | 60.0% | |
CCACGGAAGATACTGTGCGC+CGG | - | chr2.4:53863298-53863317 | MS.gene073428:intron | 60.0% | |
CGAATGCCCAATGGCATCCG+CGG | - | chr2.4:53866390-53866409 | MS.gene073428:CDS | 60.0% | |
GAACGAGAGTGGCCGTTCGT+GGG | - | chr2.4:53863406-53863425 | MS.gene073428:intron | 60.0% | |
! | GTTGTGGGAGCTGGTCTAGC+TGG | - | chr2.4:53866183-53866202 | MS.gene073428:intron | 60.0% |
! | TGGCCGTTCGTGGGTTTGGT+GGG | - | chr2.4:53863415-53863434 | MS.gene073428:intron | 60.0% |
CCGGCGCACAGTATCTTCCG+TGG | + | chr2.4:53863301-53863320 | None:intergenic | 65.0% | |
CGAACGAGAGTGGCCGTTCG+TGG | - | chr2.4:53863405-53863424 | MS.gene073428:intron | 65.0% | |
CTGTGCGCCGGATCCAGAGA+AGG | - | chr2.4:53863310-53863329 | MS.gene073428:intron | 65.0% | |
GCTCTGCCGCGGATGCCATT+GGG | + | chr2.4:53866399-53866418 | None:intergenic | 65.0% | |
GTGGCCGTTCGTGGGTTTGG+TGG | - | chr2.4:53863414-53863433 | MS.gene073428:intron | 65.0% | |
GGCTCTGCCGCGGATGCCAT+TGG | + | chr2.4:53866400-53866419 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 53861507 | 53866606 | 53861507 | ID=MS.gene073428 |
chr2.4 | mRNA | 53861507 | 53866606 | 53861507 | ID=MS.gene073428.t1;Parent=MS.gene073428 |
chr2.4 | exon | 53866318 | 53866606 | 53866318 | ID=MS.gene073428.t1.exon1;Parent=MS.gene073428.t1 |
chr2.4 | CDS | 53866318 | 53866606 | 53866318 | ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1 |
chr2.4 | exon | 53864589 | 53865281 | 53864589 | ID=MS.gene073428.t1.exon2;Parent=MS.gene073428.t1 |
chr2.4 | CDS | 53864589 | 53865281 | 53864589 | ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1 |
chr2.4 | exon | 53864409 | 53864497 | 53864409 | ID=MS.gene073428.t1.exon3;Parent=MS.gene073428.t1 |
chr2.4 | CDS | 53864409 | 53864497 | 53864409 | ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1 |
chr2.4 | exon | 53864188 | 53864257 | 53864188 | ID=MS.gene073428.t1.exon4;Parent=MS.gene073428.t1 |
chr2.4 | CDS | 53864188 | 53864257 | 53864188 | ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1 |
chr2.4 | exon | 53863834 | 53863917 | 53863834 | ID=MS.gene073428.t1.exon5;Parent=MS.gene073428.t1 |
chr2.4 | CDS | 53863834 | 53863917 | 53863834 | ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1 |
chr2.4 | exon | 53863224 | 53863300 | 53863224 | ID=MS.gene073428.t1.exon6;Parent=MS.gene073428.t1 |
chr2.4 | CDS | 53863224 | 53863300 | 53863224 | ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1 |
chr2.4 | exon | 53863017 | 53863098 | 53863017 | ID=MS.gene073428.t1.exon7;Parent=MS.gene073428.t1 |
chr2.4 | CDS | 53863017 | 53863098 | 53863017 | ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1 |
chr2.4 | exon | 53862792 | 53862874 | 53862792 | ID=MS.gene073428.t1.exon8;Parent=MS.gene073428.t1 |
chr2.4 | CDS | 53862792 | 53862874 | 53862792 | ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1 |
chr2.4 | exon | 53862314 | 53862380 | 53862314 | ID=MS.gene073428.t1.exon9;Parent=MS.gene073428.t1 |
chr2.4 | CDS | 53862314 | 53862380 | 53862314 | ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1 |
chr2.4 | exon | 53862083 | 53862211 | 53862083 | ID=MS.gene073428.t1.exon10;Parent=MS.gene073428.t1 |
chr2.4 | CDS | 53862083 | 53862211 | 53862083 | ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1 |
chr2.4 | exon | 53861880 | 53861983 | 53861880 | ID=MS.gene073428.t1.exon11;Parent=MS.gene073428.t1 |
chr2.4 | CDS | 53861880 | 53861983 | 53861880 | ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1 |
chr2.4 | exon | 53861507 | 53861617 | 53861507 | ID=MS.gene073428.t1.exon12;Parent=MS.gene073428.t1 |
chr2.4 | CDS | 53861507 | 53861617 | 53861507 | ID=cds.MS.gene073428.t1;Parent=MS.gene073428.t1 |
Gene Sequence |
Protein sequence |