Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29631.t1 | XP_003616622.1 | 97.6 | 82 | 2 | 0 | 10 | 91 | 48 | 129 | 3.30E-39 | 170.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29631.t1 | P59234 | 80.2 | 81 | 16 | 0 | 10 | 90 | 48 | 128 | 3.0e-33 | 142.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29631.t1 | G7KGZ8 | 97.6 | 82 | 2 | 0 | 10 | 91 | 48 | 129 | 2.4e-39 | 170.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene29631 | 0.852179 | 5.47E-61 | -1.69E-46 |
| MS.gene04918 | MS.gene29631 | 0.82552 | 4.48E-54 | -1.69E-46 |
| MS.gene04920 | MS.gene29631 | 0.813458 | 2.53E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene29631 | 0.868731 | 5.25E-66 | -1.69E-46 |
| MS.gene049283 | MS.gene29631 | 0.814071 | 1.86E-51 | -1.69E-46 |
| MS.gene049343 | MS.gene29631 | 0.818378 | 2.02E-52 | -1.69E-46 |
| MS.gene049350 | MS.gene29631 | 0.830882 | 2.29E-55 | -1.69E-46 |
| MS.gene049368 | MS.gene29631 | 0.819008 | 1.46E-52 | -1.69E-46 |
| MS.gene049404 | MS.gene29631 | 0.804166 | 2.46E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene29631 | 0.836712 | 7.97E-57 | -1.69E-46 |
| MS.gene049652 | MS.gene29631 | 0.802847 | 4.62E-49 | -1.69E-46 |
| MS.gene049680 | MS.gene29631 | 0.808779 | 2.62E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene29631 | 0.86674 | 2.29E-65 | -1.69E-46 |
| MS.gene049807 | MS.gene29631 | 0.853906 | 1.75E-61 | -1.69E-46 |
| MS.gene049850 | MS.gene29631 | 0.811493 | 6.81E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene29631 | 0.849813 | 2.54E-60 | -1.69E-46 |
| MS.gene050218 | MS.gene29631 | 0.80576 | 1.14E-49 | -1.69E-46 |
| MS.gene050273 | MS.gene29631 | 0.811586 | 6.50E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene29631 | 0.858475 | 8.03E-63 | -1.69E-46 |
| MS.gene050561 | MS.gene29631 | 0.849685 | 2.76E-60 | -1.69E-46 |
| MS.gene050562 | MS.gene29631 | 0.843398 | 1.44E-58 | -1.69E-46 |
| MS.gene050646 | MS.gene29631 | 0.80219 | 6.31E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene29631 | 0.81501 | 1.15E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene29631 | 0.806134 | 9.53E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene29631 | 0.809194 | 2.13E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene29631 | 0.818599 | 1.80E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene29631 | 0.81802 | 2.44E-52 | -1.69E-46 |
| MS.gene051332 | MS.gene29631 | 0.809505 | 1.83E-50 | -1.69E-46 |
| MS.gene051628 | MS.gene29631 | 0.800281 | 1.55E-48 | -1.69E-46 |
| MS.gene051699 | MS.gene29631 | 0.820704 | 5.96E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene29631 | 0.811134 | 8.15E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene29631 | 0.8091 | 2.24E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene29631 | 0.862503 | 4.84E-64 | -1.69E-46 |
| MS.gene051975 | MS.gene29631 | 0.822927 | 1.82E-53 | -1.69E-46 |
| MS.gene052037 | MS.gene29631 | 0.808892 | 2.48E-50 | -1.69E-46 |
| MS.gene052072 | MS.gene29631 | 0.806784 | 6.95E-50 | -1.69E-46 |
| MS.gene052239 | MS.gene29631 | -0.801358 | 9.35E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene29631 | 0.846412 | 2.21E-59 | -1.69E-46 |
| MS.gene052335 | MS.gene29631 | 0.800822 | 1.20E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene29631 | 0.849754 | 2.64E-60 | -1.69E-46 |
| MS.gene052516 | MS.gene29631 | 0.846223 | 2.49E-59 | -1.69E-46 |
| MS.gene052519 | MS.gene29631 | 0.846763 | 1.77E-59 | -1.69E-46 |
| MS.gene052533 | MS.gene29631 | 0.855707 | 5.27E-62 | -1.69E-46 |
| MS.gene052609 | MS.gene29631 | 0.815938 | 7.15E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene29631 | 0.816972 | 4.20E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene29631 | 0.801556 | 8.52E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene29631 | 0.832626 | 8.49E-56 | -1.69E-46 |
| MS.gene053144 | MS.gene29631 | 0.810772 | 9.76E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene29631 | 0.82347 | 1.36E-53 | -1.69E-46 |
| MS.gene053272 | MS.gene29631 | -0.84834 | 6.52E-60 | -1.69E-46 |
| MS.gene053575 | MS.gene29631 | 0.807201 | 5.67E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene29631 | 0.800583 | 1.35E-48 | -1.69E-46 |
| MS.gene05364 | MS.gene29631 | 0.809367 | 1.96E-50 | -1.69E-46 |
| MS.gene054142 | MS.gene29631 | 0.820606 | 6.28E-53 | -1.69E-46 |
| MS.gene054178 | MS.gene29631 | 0.819782 | 9.69E-53 | -1.69E-46 |
| MS.gene05423 | MS.gene29631 | 0.816725 | 4.77E-52 | -1.69E-46 |
| MS.gene05458 | MS.gene29631 | 0.835228 | 1.90E-56 | -1.69E-46 |
| MS.gene054651 | MS.gene29631 | 0.877337 | 6.81E-69 | -1.69E-46 |
| MS.gene054709 | MS.gene29631 | 0.829975 | 3.81E-55 | -1.69E-46 |
| MS.gene054892 | MS.gene29631 | 0.803016 | 4.26E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene29631 | 0.803031 | 4.23E-49 | -1.69E-46 |
| MS.gene055229 | MS.gene29631 | 0.804143 | 2.49E-49 | -1.69E-46 |
| MS.gene055386 | MS.gene29631 | 0.819698 | 1.01E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene29631 | 0.856806 | 2.51E-62 | -1.69E-46 |
| MS.gene055586 | MS.gene29631 | 0.804534 | 2.06E-49 | -1.69E-46 |
| MS.gene055724 | MS.gene29631 | 0.843203 | 1.62E-58 | -1.69E-46 |
| MS.gene055818 | MS.gene29631 | 0.826332 | 2.87E-54 | -1.69E-46 |
| MS.gene055841 | MS.gene29631 | 0.810442 | 1.15E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene29631 | 0.807568 | 4.74E-50 | -1.69E-46 |
| MS.gene056082 | MS.gene29631 | 0.809928 | 1.48E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene29631 | 0.801534 | 8.61E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene29631 | 0.808467 | 3.05E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene29631 | 0.815823 | 7.59E-52 | -1.69E-46 |
| MS.gene056444 | MS.gene29631 | 0.805773 | 1.14E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene29631 | 0.819512 | 1.12E-52 | -1.69E-46 |
| MS.gene056677 | MS.gene29631 | 0.83743 | 5.22E-57 | -1.69E-46 |
| MS.gene056699 | MS.gene29631 | 0.907757 | 3.59E-81 | -1.69E-46 |
| MS.gene056776 | MS.gene29631 | 0.802637 | 5.10E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene29631 | 0.872957 | 2.13E-67 | -1.69E-46 |
| MS.gene05690 | MS.gene29631 | 0.8205 | 6.64E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene29631 | 0.807022 | 6.19E-50 | -1.69E-46 |
| MS.gene057034 | MS.gene29631 | 0.844048 | 9.62E-59 | -1.69E-46 |
| MS.gene057102 | MS.gene29631 | 0.899498 | 1.87E-77 | -1.69E-46 |
| MS.gene057132 | MS.gene29631 | 0.810603 | 1.06E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene29631 | 0.852122 | 5.68E-61 | -1.69E-46 |
| MS.gene057611 | MS.gene29631 | 0.801713 | 7.91E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene29631 | 0.842069 | 3.24E-58 | -1.69E-46 |
| MS.gene058009 | MS.gene29631 | 0.837683 | 4.50E-57 | -1.69E-46 |
| MS.gene058010 | MS.gene29631 | 0.81879 | 1.63E-52 | -1.69E-46 |
| MS.gene058037 | MS.gene29631 | 0.816228 | 6.16E-52 | -1.69E-46 |
| MS.gene058095 | MS.gene29631 | 0.802797 | 4.73E-49 | -1.69E-46 |
| MS.gene058149 | MS.gene29631 | 0.805706 | 1.17E-49 | -1.69E-46 |
| MS.gene058159 | MS.gene29631 | 0.80757 | 4.74E-50 | -1.69E-46 |
| MS.gene058279 | MS.gene29631 | 0.816043 | 6.78E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene29631 | 0.836646 | 8.28E-57 | -1.69E-46 |
| MS.gene058781 | MS.gene29631 | 0.836184 | 1.09E-56 | -1.69E-46 |
| MS.gene058783 | MS.gene29631 | 0.842525 | 2.45E-58 | -1.69E-46 |
| MS.gene058979 | MS.gene29631 | 0.812299 | 4.55E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene29631 | 0.810483 | 1.13E-50 | -1.69E-46 |
| MS.gene059145 | MS.gene29631 | 0.800813 | 1.21E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene29631 | 0.80983 | 1.56E-50 | -1.69E-46 |
| MS.gene059272 | MS.gene29631 | 0.801954 | 7.06E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene29631 | 0.838224 | 3.27E-57 | -1.69E-46 |
| MS.gene059634 | MS.gene29631 | 0.819638 | 1.05E-52 | -1.69E-46 |
| MS.gene059774 | MS.gene29631 | 0.803623 | 3.19E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene29631 | -0.872727 | 2.55E-67 | -1.69E-46 |
| MS.gene059900 | MS.gene29631 | -0.808597 | 2.86E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene29631 | 0.849314 | 3.50E-60 | -1.69E-46 |
| MS.gene060338 | MS.gene29631 | 0.80258 | 5.24E-49 | -1.69E-46 |
| MS.gene060525 | MS.gene29631 | 0.836379 | 9.69E-57 | -1.69E-46 |
| MS.gene060840 | MS.gene29631 | 0.805626 | 1.22E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene29631 | 0.805251 | 1.46E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene29631 | 0.806744 | 7.09E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene29631 | 0.878492 | 2.69E-69 | -1.69E-46 |
| MS.gene060937 | MS.gene29631 | 0.873148 | 1.84E-67 | -1.69E-46 |
| MS.gene061100 | MS.gene29631 | 0.836095 | 1.14E-56 | -1.69E-46 |
| MS.gene061160 | MS.gene29631 | 0.803247 | 3.82E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene29631 | 0.86307 | 3.23E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29631.t1 | MTR_5g082490 | 97.561 | 82 | 2 | 0 | 10 | 91 | 48 | 129 | 9.23e-56 | 168 |
| MS.gene29631.t1 | MTR_3g070330 | 76.543 | 81 | 19 | 0 | 10 | 90 | 71 | 151 | 1.09e-41 | 134 |
| MS.gene29631.t1 | MTR_7g068250 | 72.727 | 66 | 18 | 0 | 10 | 75 | 48 | 113 | 2.59e-30 | 104 |
| MS.gene29631.t1 | MTR_3g070330 | 83.636 | 55 | 9 | 0 | 10 | 64 | 71 | 125 | 1.97e-29 | 102 |
| MS.gene29631.t1 | MTR_8g027255 | 56.250 | 64 | 28 | 0 | 4 | 67 | 38 | 101 | 2.65e-23 | 85.9 |
| MS.gene29631.t1 | MTR_2g078670 | 49.425 | 87 | 44 | 0 | 5 | 91 | 43 | 129 | 5.18e-23 | 85.9 |
| MS.gene29631.t1 | MTR_8g058785 | 65.517 | 58 | 20 | 0 | 10 | 67 | 48 | 105 | 8.09e-23 | 85.5 |
| MS.gene29631.t1 | MTR_8g061270 | 65.517 | 58 | 20 | 0 | 10 | 67 | 48 | 105 | 8.09e-23 | 85.5 |
| MS.gene29631.t1 | MTR_4g088505 | 59.375 | 64 | 25 | 1 | 4 | 67 | 43 | 105 | 2.85e-21 | 81.3 |
| MS.gene29631.t1 | MTR_3g091840 | 53.125 | 64 | 30 | 0 | 4 | 67 | 38 | 101 | 1.44e-20 | 79.0 |
| MS.gene29631.t1 | MTR_1g077760 | 51.852 | 54 | 26 | 0 | 10 | 63 | 1 | 54 | 1.35e-17 | 72.0 |
| MS.gene29631.t1 | MTR_1g077750 | 46.296 | 54 | 29 | 0 | 4 | 57 | 38 | 91 | 4.34e-15 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29631.t1 | AT2G40110 | 81.707 | 82 | 14 | 1 | 11 | 91 | 49 | 130 | 3.48e-43 | 137 |
| MS.gene29631.t1 | AT3G11230 | 67.045 | 88 | 28 | 1 | 4 | 91 | 43 | 129 | 3.10e-37 | 122 |
| MS.gene29631.t1 | AT3G11230 | 67.045 | 88 | 28 | 1 | 4 | 91 | 76 | 162 | 6.16e-37 | 122 |
| MS.gene29631.t1 | AT3G55890 | 67.073 | 82 | 19 | 1 | 10 | 91 | 48 | 121 | 3.18e-32 | 108 |
| MS.gene29631.t1 | AT3G55890 | 67.073 | 82 | 19 | 1 | 10 | 91 | 48 | 121 | 3.18e-32 | 108 |
| MS.gene29631.t1 | AT2G40110 | 85.455 | 55 | 8 | 0 | 11 | 65 | 49 | 103 | 1.37e-29 | 102 |
| MS.gene29631.t1 | AT3G08990 | 69.697 | 66 | 20 | 0 | 10 | 75 | 48 | 113 | 6.70e-29 | 100 |
| MS.gene29631.t1 | AT3G08990 | 69.697 | 66 | 20 | 0 | 10 | 75 | 48 | 113 | 6.70e-29 | 100 |
| MS.gene29631.t1 | AT3G08990 | 69.697 | 66 | 20 | 0 | 10 | 75 | 48 | 113 | 6.70e-29 | 100 |
| MS.gene29631.t1 | AT5G53940 | 56.627 | 83 | 36 | 0 | 9 | 91 | 47 | 129 | 2.08e-27 | 97.1 |
| MS.gene29631.t1 | AT3G55890 | 79.630 | 54 | 11 | 0 | 10 | 63 | 48 | 101 | 2.55e-26 | 93.6 |
| MS.gene29631.t1 | AT3G55890 | 79.630 | 54 | 11 | 0 | 10 | 63 | 48 | 101 | 2.55e-26 | 93.6 |
| MS.gene29631.t1 | AT3G11230 | 70.968 | 62 | 17 | 1 | 4 | 65 | 43 | 103 | 1.33e-24 | 89.4 |
| MS.gene29631.t1 | AT3G11230 | 72.131 | 61 | 16 | 1 | 4 | 64 | 76 | 135 | 2.23e-24 | 89.7 |
| MS.gene29631.t1 | AT4G27745 | 52.941 | 68 | 32 | 0 | 4 | 71 | 38 | 105 | 7.27e-22 | 82.4 |
| MS.gene29631.t1 | AT4G27745 | 52.941 | 68 | 32 | 0 | 4 | 71 | 38 | 105 | 7.27e-22 | 82.4 |
| MS.gene29631.t1 | AT4G27745 | 52.941 | 68 | 32 | 0 | 4 | 71 | 38 | 105 | 7.27e-22 | 82.4 |
| MS.gene29631.t1 | AT4G27745 | 52.941 | 68 | 32 | 0 | 4 | 71 | 38 | 105 | 7.27e-22 | 82.4 |
| MS.gene29631.t1 | AT2G40110 | 80.000 | 35 | 7 | 0 | 11 | 45 | 49 | 83 | 1.22e-14 | 63.5 |
| MS.gene29631.t1 | AT2G40110 | 80.000 | 35 | 7 | 0 | 11 | 45 | 49 | 83 | 1.22e-14 | 63.5 |
| MS.gene29631.t1 | AT4G27740 | 40.000 | 60 | 36 | 0 | 9 | 68 | 43 | 102 | 4.03e-12 | 57.4 |
Find 19 sgRNAs with CRISPR-Local
Find 63 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCTGATGGCAGCAATTAT+TGG | 0.259271 | 5.1:-64575622 | MS.gene29631:CDS |
| TACAGTGTGAATGTTTCTAT+TGG | 0.322176 | 5.1:-64576148 | MS.gene29631:intron |
| TTGACCAGGTTCAAGGTGTC+TGG | 0.365136 | 5.1:-64575644 | MS.gene29631:intron |
| TCCTGATGGCAGCAATTATT+GGG | 0.368015 | 5.1:-64575621 | MS.gene29631:CDS |
| TGTTTCTATTGGAGAATTAG+AGG | 0.372709 | 5.1:-64576137 | MS.gene29631:CDS |
| ACCCAATAATTGCTGCCATC+AGG | 0.450327 | 5.1:+64575620 | None:intergenic |
| GAGGACAGAAATATGATGAC+TGG | 0.475545 | 5.1:-64576118 | MS.gene29631:CDS |
| TTCAAGGTGTCTGGTCCTGA+TGG | 0.507863 | 5.1:-64575635 | MS.gene29631:CDS |
| TTTCAACACCATGTGTTGCA+TGG | 0.544712 | 5.1:+64575594 | None:intergenic |
| GTCGGTTGTGGATCAATCCT+CGG | 0.549786 | 5.1:-64576067 | MS.gene29631:CDS |
| AAAAGCCAGAAGTACAAAGA+AGG | 0.556508 | 5.1:-64575938 | MS.gene29631:CDS |
| TTTCCACAGCAGACATGGGA+AGG | 0.566067 | 5.1:-64576460 | None:intergenic |
| AAGGAAAATCTGTTCTTGAA+CGG | 0.572251 | 5.1:-64575919 | MS.gene29631:intron |
| GTTGTGGATCAATCCTCGGT+TGG | 0.576717 | 5.1:-64576063 | MS.gene29631:CDS |
| TGGGTTAGCCATGCAACACA+TGG | 0.601436 | 5.1:-64575602 | MS.gene29631:CDS |
| AGGACAGAAATATGATGACT+GGG | 0.607783 | 5.1:-64576117 | MS.gene29631:CDS |
| GAAGGCTTATCTCTTCCGTA+AGG | 0.633340 | 5.1:-64576442 | MS.gene29631:intron |
| GTCTTACATATGTCCAACCG+AGG | 0.682634 | 5.1:+64576050 | None:intergenic |
| GATGACTGGGATGCATACTG+TGG | 0.714746 | 5.1:-64576104 | MS.gene29631:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATAATAATTAGAACAA+GGG | - | chr5.1:64576233-64576252 | MS.gene29631:intron | 15.0% |
| !!! | ACAGTTATGTTTTTTATTCA+TGG | - | chr5.1:64575757-64575776 | MS.gene29631:intron | 20.0% |
| !!! | CATTGATAATAATTAGAACA+AGG | - | chr5.1:64576232-64576251 | MS.gene29631:intron | 20.0% |
| ! | ACTAACTGCAAAATATAATG+CGG | + | chr5.1:64575814-64575833 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTATTCATGGCTT+TGG | - | chr5.1:64575763-64575782 | MS.gene29631:intron | 25.0% |
| !!! | TGTTTTTTATTCATGGCTTT+GGG | - | chr5.1:64575764-64575783 | MS.gene29631:intron | 25.0% |
| AAGGAAAATCTGTTCTTGAA+CGG | - | chr5.1:64576101-64576120 | MS.gene29631:CDS | 30.0% | |
| ACCTTTGATTACAAACTACA+AGG | + | chr5.1:64575727-64575746 | None:intergenic | 30.0% | |
| CATTAAGTTAAGTTACCCTT+TGG | - | chr5.1:64576034-64576053 | MS.gene29631:intron | 30.0% | |
| GATTTCGGTTTCATTGAAAA+TGG | + | chr5.1:64575667-64575686 | None:intergenic | 30.0% | |
| ! | ATTTTCCTTCTTTGTACTTC+TGG | + | chr5.1:64576090-64576109 | None:intergenic | 30.0% |
| ! | GTTTGTAATCAAAGGTGTAA+AGG | - | chr5.1:64575731-64575750 | MS.gene29631:intron | 30.0% |
| ! | TACAGTGTGAATGTTTCTAT+TGG | - | chr5.1:64575872-64575891 | MS.gene29631:intron | 30.0% |
| ! | TGTTTCTATTGGAGAATTAG+AGG | - | chr5.1:64575883-64575902 | MS.gene29631:intron | 30.0% |
| ACTTAATGCAGCATAGAAAC+AGG | + | chr5.1:64576022-64576041 | None:intergenic | 35.0% | |
| AGCGATATATAAGTATGTCG+TGG | - | chr5.1:64576334-64576353 | MS.gene29631:intron | 35.0% | |
| AGGACAGAAATATGATGACT+GGG | - | chr5.1:64575903-64575922 | MS.gene29631:intron | 35.0% | |
| ATGCAGGACAAAAGGTTAAA+GGG | + | chr5.1:64575695-64575714 | None:intergenic | 35.0% | |
| ATGGTGAAACCAAAGTTATC+AGG | + | chr5.1:64575648-64575667 | None:intergenic | 35.0% | |
| CAAGGATAACTTACACCTTA+CGG | + | chr5.1:64575596-64575615 | None:intergenic | 35.0% | |
| GTGTAAGTTATCCTTGACAT+TGG | - | chr5.1:64575600-64575619 | MS.gene29631:CDS | 35.0% | |
| ! | AAAAGCCAGAAGTACAAAGA+AGG | - | chr5.1:64576082-64576101 | MS.gene29631:CDS | 35.0% |
| ! | CTTTTGTCCTGCATCATTTT+GGG | - | chr5.1:64575701-64575720 | MS.gene29631:intron | 35.0% |
| ! | GCCTTGTAGTTTGTAATCAA+AGG | - | chr5.1:64575723-64575742 | MS.gene29631:intron | 35.0% |
| AGTCTCCTGAAAGAAACCAA+AGG | + | chr5.1:64576053-64576072 | None:intergenic | 40.0% | |
| CCAAAATGATGCAGGACAAA+AGG | + | chr5.1:64575703-64575722 | None:intergenic | 40.0% | |
| GAGGACAGAAATATGATGAC+TGG | - | chr5.1:64575902-64575921 | MS.gene29631:intron | 40.0% | |
| GATGCAGGACAAAAGGTTAA+AGG | + | chr5.1:64575696-64575715 | None:intergenic | 40.0% | |
| GGTTAAAGGGTGGAAGATTT+CGG | + | chr5.1:64575682-64575701 | None:intergenic | 40.0% | |
| GTCTCCTGAAAGAAACCAAA+GGG | + | chr5.1:64576052-64576071 | None:intergenic | 40.0% | |
| GTGTTCTGTCCTGATAACTT+TGG | - | chr5.1:64575636-64575655 | MS.gene29631:CDS | 40.0% | |
| TAATTACTCTGTCAGTGTCG+TGG | - | chr5.1:64576269-64576288 | MS.gene29631:intron | 40.0% | |
| TATAATGCGGCTAGAGCTAA+TGG | + | chr5.1:64575801-64575820 | None:intergenic | 40.0% | |
| TATATCGCTCAAAACCCATG+TGG | + | chr5.1:64576323-64576342 | None:intergenic | 40.0% | |
| TCCTGATGGCAGCAATTATT+GGG | - | chr5.1:64576399-64576418 | MS.gene29631:intron | 40.0% | |
| TGCCAAACATCAACACATGT+CGG | - | chr5.1:64576295-64576314 | MS.gene29631:intron | 40.0% | |
| TTTCAACACCATGTGTTGCA+TGG | + | chr5.1:64576429-64576448 | None:intergenic | 40.0% | |
| ! | CCTTTTGTCCTGCATCATTT+TGG | - | chr5.1:64575700-64575719 | MS.gene29631:intron | 40.0% |
| ! | GAGTTTTTGCTCTTTTGACC+AGG | - | chr5.1:64576362-64576381 | MS.gene29631:intron | 40.0% |
| ! | GTTACCCTTTGGTTTCTTTC+AGG | - | chr5.1:64576045-64576064 | MS.gene29631:intron | 40.0% |
| !! | AGTGAAAGGTACCAATGTCA+AGG | + | chr5.1:64575614-64575633 | None:intergenic | 40.0% |
| ACCCAATAATTGCTGCCATC+AGG | + | chr5.1:64576403-64576422 | None:intergenic | 45.0% | |
| AGGACAGAACACGTAGTGAA+AGG | + | chr5.1:64575628-64575647 | None:intergenic | 45.0% | |
| CAGGACAAAAGGTTAAAGGG+TGG | + | chr5.1:64575692-64575711 | None:intergenic | 45.0% | |
| GAAGGCTTATCTCTTCCGTA+AGG | - | chr5.1:64575578-64575597 | MS.gene29631:CDS | 45.0% | |
| GGCTAGAGCTAATGGAGATT+CGG | + | chr5.1:64575793-64575812 | None:intergenic | 45.0% | |
| GTCCTGATGGCAGCAATTAT+TGG | - | chr5.1:64576398-64576417 | MS.gene29631:intron | 45.0% | |
| GTCTTACATATGTCCAACCG+AGG | + | chr5.1:64575973-64575992 | None:intergenic | 45.0% | |
| TACAAGGCCCAAAATGATGC+AGG | + | chr5.1:64575711-64575730 | None:intergenic | 45.0% | |
| TAGAGCTAATGGAGATTCGG+AGG | + | chr5.1:64575790-64575809 | None:intergenic | 45.0% | |
| ! | CACCGACATGTGTTGATGTT+TGG | + | chr5.1:64576300-64576319 | None:intergenic | 45.0% |
| ! | GTGGCTGACATTTTCTGTGT+CGG | - | chr5.1:64575935-64575954 | MS.gene29631:CDS | 45.0% |
| ! | TGCTCTTTTGACCAGGTTCA+AGG | - | chr5.1:64576369-64576388 | MS.gene29631:intron | 45.0% |
| !!! | GACATTTTCTGTGTCGGTTG+TGG | - | chr5.1:64575941-64575960 | MS.gene29631:CDS | 45.0% |
| GATGACTGGGATGCATACTG+TGG | - | chr5.1:64575916-64575935 | MS.gene29631:intron | 50.0% | |
| GTCGGTTGTGGATCAATCCT+CGG | - | chr5.1:64575953-64575972 | MS.gene29631:CDS | 50.0% | |
| GTTGTGGATCAATCCTCGGT+TGG | - | chr5.1:64575957-64575976 | MS.gene29631:intron | 50.0% | |
| ! | TTCAAGGTGTCTGGTCCTGA+TGG | - | chr5.1:64576385-64576404 | MS.gene29631:intron | 50.0% |
| ! | TTGACCAGGTTCAAGGTGTC+TGG | - | chr5.1:64576376-64576395 | MS.gene29631:intron | 50.0% |
| !! | AACACATGTCGGTGCCACAT+GGG | - | chr5.1:64576306-64576325 | MS.gene29631:intron | 50.0% |
| !! | TGGGTTAGCCATGCAACACA+TGG | - | chr5.1:64576418-64576437 | MS.gene29631:intron | 50.0% |
| AGGACCAGACACCTTGAACC+TGG | + | chr5.1:64576383-64576402 | None:intergenic | 55.0% | |
| !! | CAACACATGTCGGTGCCACA+TGG | - | chr5.1:64576305-64576324 | MS.gene29631:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 64575574 | 64576468 | 64575574 | ID=MS.gene29631 |
| chr5.1 | mRNA | 64575574 | 64576468 | 64575574 | ID=MS.gene29631.t1;Parent=MS.gene29631 |
| chr5.1 | exon | 64576443 | 64576468 | 64576443 | ID=MS.gene29631.t1.exon1;Parent=MS.gene29631.t1 |
| chr5.1 | CDS | 64576443 | 64576468 | 64576443 | ID=cds.MS.gene29631.t1;Parent=MS.gene29631.t1 |
| chr5.1 | exon | 64576057 | 64576165 | 64576057 | ID=MS.gene29631.t1.exon2;Parent=MS.gene29631.t1 |
| chr5.1 | CDS | 64576057 | 64576165 | 64576057 | ID=cds.MS.gene29631.t1;Parent=MS.gene29631.t1 |
| chr5.1 | exon | 64575920 | 64575975 | 64575920 | ID=MS.gene29631.t1.exon3;Parent=MS.gene29631.t1 |
| chr5.1 | CDS | 64575920 | 64575975 | 64575920 | ID=cds.MS.gene29631.t1;Parent=MS.gene29631.t1 |
| chr5.1 | exon | 64575574 | 64575658 | 64575574 | ID=MS.gene29631.t1.exon4;Parent=MS.gene29631.t1 |
| chr5.1 | CDS | 64575574 | 64575658 | 64575574 | ID=cds.MS.gene29631.t1;Parent=MS.gene29631.t1 |
| Gene Sequence |
| Protein sequence |
