Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057359.t1 | XP_003600808.1 | 97 | 332 | 9 | 1 | 1 | 332 | 101 | 431 | 8.00E-184 | 652.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057359.t1 | Q9LZN0 | 73.4 | 334 | 81 | 3 | 1 | 332 | 71 | 398 | 1.6e-140 | 500.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057359.t1 | A0A072V9B0 | 97.0 | 332 | 9 | 1 | 1 | 332 | 101 | 431 | 5.7e-184 | 652.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene057359 | 0.802243 | 6.15E-49 | -1.69E-46 |
| MS.gene053348 | MS.gene057359 | 0.802339 | 5.88E-49 | -1.69E-46 |
| MS.gene055308 | MS.gene057359 | 0.80123 | 9.93E-49 | -1.69E-46 |
| MS.gene055578 | MS.gene057359 | 0.808037 | 3.77E-50 | -1.69E-46 |
| MS.gene056041 | MS.gene057359 | 0.846229 | 2.48E-59 | -1.69E-46 |
| MS.gene057357 | MS.gene057359 | 0.87954 | 1.15E-69 | -1.69E-46 |
| MS.gene057358 | MS.gene057359 | 0.990927 | 5.09E-185 | -1.69E-46 |
| MS.gene057359 | MS.gene060473 | 0.813719 | 2.22E-51 | -1.69E-46 |
| MS.gene057359 | MS.gene060565 | 0.800237 | 1.58E-48 | -1.69E-46 |
| MS.gene057359 | MS.gene061099 | 0.818701 | 1.71E-52 | -1.69E-46 |
| MS.gene057359 | MS.gene061260 | 0.819741 | 9.90E-53 | -1.69E-46 |
| MS.gene057359 | MS.gene061275 | 0.821094 | 4.85E-53 | -1.69E-46 |
| MS.gene057359 | MS.gene067144 | 0.802185 | 6.32E-49 | -1.69E-46 |
| MS.gene057359 | MS.gene072963 | 0.808549 | 2.93E-50 | -1.69E-46 |
| MS.gene057359 | MS.gene08988 | 0.817109 | 3.91E-52 | -1.69E-46 |
| MS.gene057359 | MS.gene09002 | 0.80233 | 5.90E-49 | -1.69E-46 |
| MS.gene057359 | MS.gene09540 | 0.804513 | 2.08E-49 | -1.69E-46 |
| MS.gene057359 | MS.gene09543 | 0.800375 | 1.48E-48 | -1.69E-46 |
| MS.gene057359 | MS.gene09806 | 0.833125 | 6.38E-56 | -1.69E-46 |
| MS.gene057359 | MS.gene20231 | 0.808915 | 2.45E-50 | -1.69E-46 |
| MS.gene057359 | MS.gene21320 | 0.811311 | 7.46E-51 | -1.69E-46 |
| MS.gene057359 | MS.gene22466 | 0.807941 | 3.95E-50 | -1.69E-46 |
| MS.gene057359 | MS.gene25797 | 0.818673 | 1.73E-52 | -1.69E-46 |
| MS.gene057359 | MS.gene28867 | 0.824044 | 9.99E-54 | -1.69E-46 |
| MS.gene057359 | MS.gene37925 | 0.808061 | 3.73E-50 | -1.69E-46 |
| MS.gene057359 | MS.gene40329 | 0.81361 | 2.35E-51 | -1.69E-46 |
| MS.gene057359 | MS.gene44100 | 0.843409 | 1.43E-58 | -1.69E-46 |
| MS.gene057359 | MS.gene48067 | 0.810009 | 1.43E-50 | -1.69E-46 |
| MS.gene057359 | MS.gene49312 | 0.827911 | 1.20E-54 | -1.69E-46 |
| MS.gene057359 | MS.gene57751 | 0.815046 | 1.13E-51 | -1.69E-46 |
| MS.gene057359 | MS.gene58234 | 0.814258 | 1.69E-51 | -1.69E-46 |
| MS.gene057359 | MS.gene61977 | 0.820503 | 6.63E-53 | -1.69E-46 |
| MS.gene057359 | MS.gene65301 | 0.803042 | 4.21E-49 | -1.69E-46 |
| MS.gene057359 | MS.gene69328 | 0.800686 | 1.28E-48 | -1.69E-46 |
| MS.gene057359 | MS.gene70403 | 0.804383 | 2.22E-49 | -1.69E-46 |
| MS.gene057359 | MS.gene71431 | 0.833394 | 5.47E-56 | -1.69E-46 |
| MS.gene057359 | MS.gene75318 | 0.813335 | 2.70E-51 | -1.69E-46 |
| MS.gene057359 | MS.gene75642 | 0.827514 | 1.50E-54 | -1.69E-46 |
| MS.gene057359 | MS.gene77563 | 0.815497 | 8.97E-52 | -1.69E-46 |
| MS.gene057359 | MS.gene79251 | 0.832756 | 7.88E-56 | -1.69E-46 |
| MS.gene057359 | MS.gene79921 | 0.823254 | 1.53E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 85 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAGTTCCTGAGTCATATT+TGG | 0.209473 | 3.1:-56892744 | MS.gene057359:CDS |
| GTTTCGGAGCTACAGAATTT+TGG | 0.235434 | 3.1:-56892985 | MS.gene057359:CDS |
| CAGCATTGCTTTGGCTGAAA+TGG | 0.280188 | 3.1:-56892765 | MS.gene057359:CDS |
| TTCTGCAGGTAATGACTTGC+AGG | 0.301595 | 3.1:-56893192 | MS.gene057359:intron |
| TTGTTGAATTAATACCTTCT+TGG | 0.307496 | 3.1:-56893333 | MS.gene057359:CDS |
| GCTTCGGGAACACGGGGAAC+GGG | 0.327886 | 3.1:+56892872 | None:intergenic |
| CTTGTTGCATTGGATCTTGC+TGG | 0.334600 | 3.1:+56891921 | None:intergenic |
| GTTAAGGACTTCATGCTTGA+TGG | 0.349943 | 3.1:-56892036 | MS.gene057359:CDS |
| GTAGTTGAACGGTTGGGATT+AGG | 0.362566 | 3.1:+56892078 | None:intergenic |
| CTTCTCACTGAGACCTGCTT+CGG | 0.374692 | 3.1:+56892856 | None:intergenic |
| AAAAGGGGTTTGCACTGCTT+TGG | 0.392592 | 3.1:-56894231 | MS.gene057359:CDS |
| ACCTCAAGTTTCTTTCCATC+AGG | 0.394767 | 3.1:+56893301 | None:intergenic |
| GGTGAAGATATGTCAGGTTC+AGG | 0.410078 | 3.1:-56894254 | MS.gene057359:CDS |
| GTTCAACTACAAAGTCTTCA+TGG | 0.412655 | 3.1:-56892065 | MS.gene057359:CDS |
| GCTACTGCATTGGGCAACTT+TGG | 0.414279 | 3.1:-56893435 | MS.gene057359:CDS |
| TTCTCACTGAGACCTGCTTC+GGG | 0.416408 | 3.1:+56892857 | None:intergenic |
| TCCTTGAAGCATCGGTTCCC+TGG | 0.420015 | 3.1:-56891967 | MS.gene057359:CDS |
| GTCTATCAACAGCATTGCTT+TGG | 0.420189 | 3.1:-56892774 | MS.gene057359:CDS |
| CAGGAAATATTAGACAGTTT+CGG | 0.426447 | 3.1:-56893001 | MS.gene057359:CDS |
| TGGAAGCTGCTATTTATCTA+TGG | 0.429701 | 3.1:-56892128 | MS.gene057359:CDS |
| GACTTTGTAGTTGAACGGTT+GGG | 0.435846 | 3.1:+56892072 | None:intergenic |
| GTTCCCCGTGTTCCCGAAGC+AGG | 0.436453 | 3.1:-56892869 | MS.gene057359:CDS |
| AATGCCATTACTAATCTTTG+TGG | 0.444234 | 3.1:-56894200 | MS.gene057359:CDS |
| TGCTTCGGGAACACGGGGAA+CGG | 0.446615 | 3.1:+56892871 | None:intergenic |
| GAATTGGAACCTTGTTGCAT+TGG | 0.446692 | 3.1:+56891911 | None:intergenic |
| TTATCGAGTTTGCGAAGGGC+TGG | 0.449399 | 3.1:+56893142 | None:intergenic |
| GATATGTCAGGTTCAGGAAA+AGG | 0.450921 | 3.1:-56894248 | MS.gene057359:CDS |
| CAGAATGGAAGAACTTGCCT+TGG | 0.450957 | 3.1:-56892258 | MS.gene057359:CDS |
| TCTTTCTTCTCACAAGGTAG+TGG | 0.451314 | 3.1:+56893403 | None:intergenic |
| AGCCGCTGATTCAGAAGGTT+CGG | 0.452812 | 3.1:-56892942 | MS.gene057359:CDS |
| TCAGGAAATGTTTGCCAAGA+AGG | 0.453625 | 3.1:+56893319 | None:intergenic |
| TTCTAAATTCCTTGAAGCAT+CGG | 0.455660 | 3.1:-56891975 | MS.gene057359:CDS |
| GCCAGGGAACCGATGCTTCA+AGG | 0.460031 | 3.1:+56891966 | None:intergenic |
| ATATGTCAGGTTCAGGAAAA+GGG | 0.474996 | 3.1:-56894247 | MS.gene057359:CDS |
| GAACATGTAGCTACTGCATT+GGG | 0.478546 | 3.1:-56893444 | MS.gene057359:intron |
| GTTGATGCAAATATCTGTCC+TGG | 0.487154 | 3.1:+56893168 | None:intergenic |
| AGAAATGTGGCAAAGAGAGA+TGG | 0.490084 | 3.1:-56893383 | MS.gene057359:CDS |
| TCTTGGCAAACATTTCCTGA+TGG | 0.512838 | 3.1:-56893316 | MS.gene057359:CDS |
| CTGAATTGACTTGCGAAAAG+AGG | 0.513814 | 3.1:+56892919 | None:intergenic |
| AAGGTAGTTTGAGTTAAGCC+AGG | 0.520536 | 3.1:+56891949 | None:intergenic |
| CTTCGGGAACACGGGGAACG+GGG | 0.523029 | 3.1:+56892873 | None:intergenic |
| CACATTTCTTTCTTCTCACA+AGG | 0.525180 | 3.1:+56893397 | None:intergenic |
| GAGACCTGCTTCGGGAACAC+GGG | 0.529025 | 3.1:+56892865 | None:intergenic |
| TGAACATGTAGCTACTGCAT+TGG | 0.529743 | 3.1:-56893445 | MS.gene057359:intron |
| AGATTTGCAAAATTGTTGCT+AGG | 0.530179 | 3.1:-56894275 | MS.gene057359:CDS |
| TTGCTAGGTGAAGATATGTC+AGG | 0.530876 | 3.1:-56894260 | MS.gene057359:CDS |
| TTCAACTACAAAGTCTTCAT+GGG | 0.532814 | 3.1:-56892064 | MS.gene057359:CDS |
| TGAGACCTGCTTCGGGAACA+CGG | 0.534669 | 3.1:+56892864 | None:intergenic |
| TTGGATCTTGCTGGTATCCA+AGG | 0.534759 | 3.1:+56891930 | None:intergenic |
| CGAGTTTGCGAAGGGCTGGA+AGG | 0.544385 | 3.1:+56893146 | None:intergenic |
| AGACTTTGTAGTTGAACGGT+TGG | 0.547598 | 3.1:+56892071 | None:intergenic |
| AGGTAATGACTTGCAGGCCC+AGG | 0.549183 | 3.1:-56893186 | MS.gene057359:CDS |
| TGGCTTAACTCAAACTACCT+TGG | 0.552224 | 3.1:-56891947 | MS.gene057359:CDS |
| CATACCACAAAGATTAGTAA+TGG | 0.555497 | 3.1:+56894196 | None:intergenic |
| ATGAAGACTTTGTAGTTGAA+CGG | 0.561493 | 3.1:+56892067 | None:intergenic |
| TGGGATTAGGCGTTGATCTG+TGG | 0.563972 | 3.1:+56892091 | None:intergenic |
| CACATCAGATCAATTCTCCT+CGG | 0.578395 | 3.1:-56892214 | MS.gene057359:CDS |
| AACAGATGTTGATATGATGA+AGG | 0.579015 | 3.1:-56894300 | None:intergenic |
| GCATGTTATCGAGTTTGCGA+AGG | 0.584286 | 3.1:+56893137 | None:intergenic |
| ATTGTAGCCGCTGATTCAGA+AGG | 0.591209 | 3.1:-56892947 | MS.gene057359:CDS |
| CATGTTATCGAGTTTGCGAA+GGG | 0.595448 | 3.1:+56893138 | None:intergenic |
| TATGTCAGGTTCAGGAAAAG+GGG | 0.595512 | 3.1:-56894246 | MS.gene057359:CDS |
| TAGAAGTGAGACCTTGGGGA+GGG | 0.597116 | 3.1:+56892718 | None:intergenic |
| TTGATGCAAATATCTGTCCT+GGG | 0.598206 | 3.1:+56893169 | None:intergenic |
| TGTGGCAAAGAGAGATGGAA+TGG | 0.599356 | 3.1:-56893378 | MS.gene057359:CDS |
| ATCGGTAAATAAAATCTCCA+AGG | 0.602171 | 3.1:+56892241 | None:intergenic |
| AGGGTTTCCAAATATGACTC+AGG | 0.603777 | 3.1:+56892737 | None:intergenic |
| AGAGGTCTAAACAATCAAGT+AGG | 0.606917 | 3.1:+56892187 | None:intergenic |
| AGGTAGTTTGAGTTAAGCCA+GGG | 0.610626 | 3.1:+56891950 | None:intergenic |
| AGCGGCAAGAAGAGAAGTGG+TGG | 0.627026 | 3.1:-56892898 | MS.gene057359:CDS |
| TTCAGCGGCAAGAAGAGAAG+TGG | 0.628274 | 3.1:-56892901 | MS.gene057359:CDS |
| CAGCAAGATCCAATGCAACA+AGG | 0.629004 | 3.1:-56891920 | None:intergenic |
| TCCTGATGGAAAGAAACTTG+AGG | 0.634337 | 3.1:-56893302 | MS.gene057359:intron |
| ATTGATCTGATGTGATGTAT+CGG | 0.636126 | 3.1:+56892223 | None:intergenic |
| AGACCTGCTTCGGGAACACG+GGG | 0.636721 | 3.1:+56892866 | None:intergenic |
| GTGCAATATGTTCAGAAGAG+AGG | 0.640548 | 3.1:+56892169 | None:intergenic |
| TCAACTACAAAGTCTTCATG+GGG | 0.644332 | 3.1:-56892063 | MS.gene057359:CDS |
| ATATTTGGAAACCCTCCCCA+AGG | 0.663884 | 3.1:-56892729 | MS.gene057359:intron |
| CTTGTGAGAAGAAAGAAATG+TGG | 0.666461 | 3.1:-56893396 | MS.gene057359:CDS |
| GGCCGAACCTTCTGAATCAG+CGG | 0.670869 | 3.1:+56892940 | None:intergenic |
| TTAGAAGTGAGACCTTGGGG+AGG | 0.695345 | 3.1:+56892717 | None:intergenic |
| ACAATCAAGTAGGCACTCCG+AGG | 0.706887 | 3.1:+56892197 | None:intergenic |
| GATAAATAGCAGCTTCCACG+CGG | 0.726168 | 3.1:+56892133 | None:intergenic |
| ACTCGAGATTGCAAACCGCG+TGG | 0.746691 | 3.1:-56892148 | MS.gene057359:CDS |
| CAACTACAAAGTCTTCATGG+GGG | 0.781366 | 3.1:-56892062 | MS.gene057359:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAAATGTAAATTAAT+TGG | + | chr3.1:56893191-56893210 | None:intergenic | 10.0% |
| !! | ATCATAATAATTCACATATA+TGG | + | chr3.1:56892981-56893000 | None:intergenic | 15.0% |
| !! | TATTTATCTTAGTCATAAAA+TGG | + | chr3.1:56893555-56893574 | None:intergenic | 15.0% |
| !!! | ATTTTATGACTAAGATAAAT+AGG | - | chr3.1:56893554-56893573 | MS.gene057359:intron | 15.0% |
| !!! | TATTTTATCAATTTACAGAA+TGG | - | chr3.1:56893943-56893962 | MS.gene057359:intron | 15.0% |
| !!! | TTTTATGACTAAGATAAATA+GGG | - | chr3.1:56893555-56893574 | MS.gene057359:intron | 15.0% |
| !! | AAAATTTGTCAACTACAATA+TGG | + | chr3.1:56892061-56892080 | None:intergenic | 20.0% |
| !! | TGTTATTAATTCCAAAAGAA+TGG | + | chr3.1:56892376-56892395 | None:intergenic | 20.0% |
| !! | TGTTATTAATTTCAAAAGGA+TGG | - | chr3.1:56892550-56892569 | MS.gene057359:intron | 20.0% |
| !!! | AATATCTATTTGAGTTGATT+AGG | - | chr3.1:56892213-56892232 | MS.gene057359:CDS | 20.0% |
| !!! | ATGGTGTTATTAATTTCAAA+AGG | - | chr3.1:56892546-56892565 | MS.gene057359:intron | 20.0% |
| !!! | TAAAATTGATTTTGACATGT+TGG | - | chr3.1:56892188-56892207 | MS.gene057359:CDS | 20.0% |
| !!! | TAATTATGTGTTTCTTTTCA+TGG | - | chr3.1:56892135-56892154 | MS.gene057359:CDS | 20.0% |
| !!! | TGATTATGATGTTTCTAATA+TGG | - | chr3.1:56892997-56893016 | MS.gene057359:CDS | 20.0% |
| !!! | TTTACATTTTCTTTTAACAC+AGG | - | chr3.1:56893196-56893215 | MS.gene057359:intron | 20.0% |
| ! | AAAGAAACTTGAGGTAAATT+TGG | - | chr3.1:56892923-56892942 | MS.gene057359:CDS | 25.0% |
| ! | GTCTTTCTATATGAAATCAA+TGG | + | chr3.1:56893612-56893631 | None:intergenic | 25.0% |
| ! | TCTTAGTCATAAAATGGAAT+AGG | + | chr3.1:56893549-56893568 | None:intergenic | 25.0% |
| ! | TTAATTGACAGAAGATTAAC+TGG | + | chr3.1:56893891-56893910 | None:intergenic | 25.0% |
| ! | TTGTAAAAGAGAGTTCAATT+TGG | + | chr3.1:56892666-56892685 | None:intergenic | 25.0% |
| ! | TTGTTGAATTAATACCTTCT+TGG | - | chr3.1:56892883-56892902 | MS.gene057359:CDS | 25.0% |
| !! | GTAGTTGACAAATTTTCTTT+TGG | - | chr3.1:56892065-56892084 | MS.gene057359:CDS | 25.0% |
| !!! | CTAACACTCTTTTTTTTGAT+TGG | - | chr3.1:56892399-56892418 | MS.gene057359:intron | 25.0% |
| !!! | TTCTTTTGGTTTGTTTAAGT+TGG | - | chr3.1:56892079-56892098 | MS.gene057359:CDS | 25.0% |
| AAAGAGAGTTCAATTTGGAA+TGG | + | chr3.1:56892661-56892680 | None:intergenic | 30.0% | |
| AACCATTCGATCTAAACTAA+TGG | + | chr3.1:56893676-56893695 | None:intergenic | 30.0% | |
| AATGCCATTACTAATCTTTG+TGG | - | chr3.1:56892016-56892035 | MS.gene057359:CDS | 30.0% | |
| AGATTTGCAAAATTGTTGCT+AGG | - | chr3.1:56891941-56891960 | MS.gene057359:CDS | 30.0% | |
| ATATGCCCAAGTCTATAATA+GGG | + | chr3.1:56893771-56893790 | None:intergenic | 30.0% | |
| ATCGGTAAATAAAATCTCCA+AGG | + | chr3.1:56893978-56893997 | None:intergenic | 30.0% | |
| ATGAAGACTTTGTAGTTGAA+CGG | + | chr3.1:56894152-56894171 | None:intergenic | 30.0% | |
| ATTCCAAAAGAATGGTAGTT+TGG | + | chr3.1:56892368-56892387 | None:intergenic | 30.0% | |
| ATTGATCTGATGTGATGTAT+CGG | + | chr3.1:56893996-56894015 | None:intergenic | 30.0% | |
| ATTTCAAAAGGATGGTAGTT+TGG | - | chr3.1:56892558-56892577 | MS.gene057359:intron | 30.0% | |
| CAGGAAATATTAGACAGTTT+CGG | - | chr3.1:56893215-56893234 | MS.gene057359:intron | 30.0% | |
| CATACCACAAAGATTAGTAA+TGG | + | chr3.1:56892023-56892042 | None:intergenic | 30.0% | |
| CATTACCCTATTATAGACTT+GGG | - | chr3.1:56893763-56893782 | MS.gene057359:intron | 30.0% | |
| CTAAGTGTTAAAAACACGTT+TGG | + | chr3.1:56892287-56892306 | None:intergenic | 30.0% | |
| TGGAATAGGCTATAGAAAAA+AGG | + | chr3.1:56893535-56893554 | None:intergenic | 30.0% | |
| TTAACTGGAGAATATTTCAC+AGG | + | chr3.1:56893876-56893895 | None:intergenic | 30.0% | |
| TTCAACTACAAAGTCTTCAT+GGG | - | chr3.1:56894152-56894171 | MS.gene057359:intron | 30.0% | |
| TTCTAAATTCCTTGAAGCAT+CGG | - | chr3.1:56894241-56894260 | MS.gene057359:CDS | 30.0% | |
| ! | AACCATTAGTTTAGATCGAA+TGG | - | chr3.1:56893671-56893690 | MS.gene057359:intron | 30.0% |
| ! | ATGTGTTTCTTTTCATGGTA+AGG | - | chr3.1:56892140-56892159 | MS.gene057359:CDS | 30.0% |
| ! | TATCGAATCTTGTTCTTTTG+CGG | - | chr3.1:56893112-56893131 | MS.gene057359:intron | 30.0% |
| ! | TTCATGTAAAAGTGAGTTGA+AGG | + | chr3.1:56892622-56892641 | None:intergenic | 30.0% |
| !! | GAATTTTGGTATGTTGATCA+AGG | - | chr3.1:56893245-56893264 | MS.gene057359:intron | 30.0% |
| AGAGGTCTAAACAATCAAGT+AGG | + | chr3.1:56894032-56894051 | None:intergenic | 35.0% | |
| ATACCAATACCATCATGTCT+AGG | - | chr3.1:56892454-56892473 | MS.gene057359:intron | 35.0% | |
| ATATGTCAGGTTCAGGAAAA+GGG | - | chr3.1:56891969-56891988 | MS.gene057359:CDS | 35.0% | |
| ATGGTGATAGTTTCAGCATT+GGG | + | chr3.1:56892962-56892981 | None:intergenic | 35.0% | |
| CAAAAAAAGAGTGGTGGTAA+TGG | - | chr3.1:56892527-56892546 | MS.gene057359:intron | 35.0% | |
| CACATTTCTTTCTTCTCACA+AGG | + | chr3.1:56892822-56892841 | None:intergenic | 35.0% | |
| CCAAGTCTATAATAGGGTAA+TGG | + | chr3.1:56893765-56893784 | None:intergenic | 35.0% | |
| CCATTACCCTATTATAGACT+TGG | - | chr3.1:56893762-56893781 | MS.gene057359:intron | 35.0% | |
| CTTGTGAGAAGAAAGAAATG+TGG | - | chr3.1:56892820-56892839 | MS.gene057359:CDS | 35.0% | |
| GATATGCCCAAGTCTATAAT+AGG | + | chr3.1:56893772-56893791 | None:intergenic | 35.0% | |
| GATCTCATACACCTATTCAT+CGG | + | chr3.1:56893743-56893762 | None:intergenic | 35.0% | |
| GCTACAGTCATAAAAAAGCT+GGG | + | chr3.1:56892325-56892344 | None:intergenic | 35.0% | |
| GTGTCCAATCAAAAAAAGAG+TGG | - | chr3.1:56892518-56892537 | MS.gene057359:intron | 35.0% | |
| GTTCAACTACAAAGTCTTCA+TGG | - | chr3.1:56894151-56894170 | MS.gene057359:intron | 35.0% | |
| TAGGGATTCAGATTTACACA+CGG | - | chr3.1:56893573-56893592 | MS.gene057359:intron | 35.0% | |
| TAGTTTAGATCGAATGGTTG+AGG | - | chr3.1:56893677-56893696 | MS.gene057359:intron | 35.0% | |
| TATGGTGATAGTTTCAGCAT+TGG | + | chr3.1:56892963-56892982 | None:intergenic | 35.0% | |
| TATGTTAGAAGTGAGACCTT+GGG | + | chr3.1:56893506-56893525 | None:intergenic | 35.0% | |
| TCAACTACAAAGTCTTCATG+GGG | - | chr3.1:56894153-56894172 | MS.gene057359:intron | 35.0% | |
| TCCAATCAAAAAAAGAGTGG+TGG | - | chr3.1:56892521-56892540 | MS.gene057359:intron | 35.0% | |
| TCTAATATGGTTCATTCTGC+AGG | - | chr3.1:56893010-56893029 | MS.gene057359:intron | 35.0% | |
| TGCTACAGTCATAAAAAAGC+TGG | + | chr3.1:56892326-56892345 | None:intergenic | 35.0% | |
| TTATAGACTTGGGCATATCT+TGG | - | chr3.1:56893773-56893792 | MS.gene057359:intron | 35.0% | |
| TTATGTTAGAAGTGAGACCT+TGG | + | chr3.1:56893507-56893526 | None:intergenic | 35.0% | |
| TTGATGCAAATATCTGTCCT+GGG | + | chr3.1:56893050-56893069 | None:intergenic | 35.0% | |
| ! | GAAACTTGTTTCCGATGAAT+AGG | - | chr3.1:56893729-56893748 | MS.gene057359:intron | 35.0% |
| ! | GTACCAAACTACCATTCTTT+TGG | - | chr3.1:56892362-56892381 | MS.gene057359:intron | 35.0% |
| ! | TGGAAGCTGCTATTTATCTA+TGG | - | chr3.1:56894088-56894107 | MS.gene057359:intron | 35.0% |
| !! | TGGTTTGTTTAAGTTGGCAA+AGG | - | chr3.1:56892085-56892104 | MS.gene057359:CDS | 35.0% |
| !!! | ACCACCACTCTTTTTTTGAT+TGG | + | chr3.1:56892525-56892544 | None:intergenic | 35.0% |
| ACCTCAAGTTTCTTTCCATC+AGG | + | chr3.1:56892918-56892937 | None:intergenic | 40.0% | |
| ACTGGAGAATATTTCACAGG+AGG | + | chr3.1:56893873-56893892 | None:intergenic | 40.0% | |
| AGAAATGTGGCAAAGAGAGA+TGG | - | chr3.1:56892833-56892852 | MS.gene057359:CDS | 40.0% | |
| AGACTTTGTAGTTGAACGGT+TGG | + | chr3.1:56894148-56894167 | None:intergenic | 40.0% | |
| AGGGTTTCCAAATATGACTC+AGG | + | chr3.1:56893482-56893501 | None:intergenic | 40.0% | |
| ATGTTAGAAGTGAGACCTTG+GGG | + | chr3.1:56893505-56893524 | None:intergenic | 40.0% | |
| CAACTACAAAGTCTTCATGG+GGG | - | chr3.1:56894154-56894173 | MS.gene057359:intron | 40.0% | |
| CAATACCATCATGTCTAGGA+TGG | - | chr3.1:56892458-56892477 | MS.gene057359:intron | 40.0% | |
| CAATACCATCCTAGACATGA+TGG | + | chr3.1:56892466-56892485 | None:intergenic | 40.0% | |
| CACATCAGATCAATTCTCCT+CGG | - | chr3.1:56894002-56894021 | MS.gene057359:intron | 40.0% | |
| CATCCTAGACATGATGGTAT+TGG | + | chr3.1:56892460-56892479 | None:intergenic | 40.0% | |
| CATGTTATCGAGTTTGCGAA+GGG | + | chr3.1:56893081-56893100 | None:intergenic | 40.0% | |
| CTGTATGATGCAATTACTGC+AGG | - | chr3.1:56893707-56893726 | MS.gene057359:intron | 40.0% | |
| GAACATGTAGCTACTGCATT+GGG | - | chr3.1:56892772-56892791 | MS.gene057359:CDS | 40.0% | |
| GACTTTGTAGTTGAACGGTT+GGG | + | chr3.1:56894147-56894166 | None:intergenic | 40.0% | |
| GATATGTCAGGTTCAGGAAA+AGG | - | chr3.1:56891968-56891987 | MS.gene057359:CDS | 40.0% | |
| GGAAGTTCCTGAGTCATATT+TGG | - | chr3.1:56893472-56893491 | MS.gene057359:intron | 40.0% | |
| GTCTATCAACAGCATTGCTT+TGG | - | chr3.1:56893442-56893461 | MS.gene057359:intron | 40.0% | |
| GTGCAATATGTTCAGAAGAG+AGG | + | chr3.1:56894050-56894069 | None:intergenic | 40.0% | |
| GTTAAGGACTTCATGCTTGA+TGG | - | chr3.1:56894180-56894199 | MS.gene057359:intron | 40.0% | |
| GTTGATGCAAATATCTGTCC+TGG | + | chr3.1:56893051-56893070 | None:intergenic | 40.0% | |
| TATGTCAGGTTCAGGAAAAG+GGG | - | chr3.1:56891970-56891989 | MS.gene057359:CDS | 40.0% | |
| TCAGGAAATGTTTGCCAAGA+AGG | + | chr3.1:56892900-56892919 | None:intergenic | 40.0% | |
| TCCACTAGTATTGTGACATG+TGG | - | chr3.1:56892430-56892449 | MS.gene057359:intron | 40.0% | |
| TCCTGATGGAAAGAAACTTG+AGG | - | chr3.1:56892914-56892933 | MS.gene057359:CDS | 40.0% | |
| TCTTGGCAAACATTTCCTGA+TGG | - | chr3.1:56892900-56892919 | MS.gene057359:CDS | 40.0% | |
| TCTTTCTTCTCACAAGGTAG+TGG | + | chr3.1:56892816-56892835 | None:intergenic | 40.0% | |
| TGAACATGTAGCTACTGCAT+TGG | - | chr3.1:56892771-56892790 | MS.gene057359:CDS | 40.0% | |
| TGGCTTAACTCAAACTACCT+TGG | - | chr3.1:56894269-56894288 | MS.gene057359:CDS | 40.0% | |
| TTGCTAGGTGAAGATATGTC+AGG | - | chr3.1:56891956-56891975 | MS.gene057359:CDS | 40.0% | |
| ! | AAGGTAGTTTGAGTTAAGCC+AGG | + | chr3.1:56894270-56894289 | None:intergenic | 40.0% |
| ! | AGGTAGTTTGAGTTAAGCCA+GGG | + | chr3.1:56894269-56894288 | None:intergenic | 40.0% |
| ! | CATCATGTCTAGGATGGTAT+TGG | - | chr3.1:56892464-56892483 | MS.gene057359:intron | 40.0% |
| ! | CTTTTCGCAAGTCAATTCAG+CGG | - | chr3.1:56893300-56893319 | MS.gene057359:intron | 40.0% |
| ! | GTTTCGGAGCTACAGAATTT+TGG | - | chr3.1:56893231-56893250 | MS.gene057359:intron | 40.0% |
| !! | CTGAATTGACTTGCGAAAAG+AGG | + | chr3.1:56893300-56893319 | None:intergenic | 40.0% |
| AAAAGGGGTTTGCACTGCTT+TGG | - | chr3.1:56891985-56892004 | MS.gene057359:CDS | 45.0% | |
| ATATTTGGAAACCCTCCCCA+AGG | - | chr3.1:56893487-56893506 | MS.gene057359:intron | 45.0% | |
| CAGAATGGAAGAACTTGCCT+TGG | - | chr3.1:56893958-56893977 | MS.gene057359:intron | 45.0% | |
| CAGCATTGCTTTGGCTGAAA+TGG | - | chr3.1:56893451-56893470 | MS.gene057359:intron | 45.0% | |
| CTTGTTGCATTGGATCTTGC+TGG | + | chr3.1:56894298-56894317 | None:intergenic | 45.0% | |
| GATAAATAGCAGCTTCCACG+CGG | + | chr3.1:56894086-56894105 | None:intergenic | 45.0% | |
| GCATGTTATCGAGTTTGCGA+AGG | + | chr3.1:56893082-56893101 | None:intergenic | 45.0% | |
| GCCACATGTCACAATACTAG+TGG | + | chr3.1:56892434-56892453 | None:intergenic | 45.0% | |
| GGCATGTGTCTCGATACTAT+TGG | - | chr3.1:56892490-56892509 | MS.gene057359:intron | 45.0% | |
| GGTGAAGATATGTCAGGTTC+AGG | - | chr3.1:56891962-56891981 | MS.gene057359:CDS | 45.0% | |
| GTAGTTGAACGGTTGGGATT+AGG | + | chr3.1:56894141-56894160 | None:intergenic | 45.0% | |
| TACAAAGTCTTCATGGGGGA+TGG | - | chr3.1:56894158-56894177 | MS.gene057359:intron | 45.0% | |
| TGTGGCAAAGAGAGATGGAA+TGG | - | chr3.1:56892838-56892857 | MS.gene057359:CDS | 45.0% | |
| TTGGATCTTGCTGGTATCCA+AGG | + | chr3.1:56894289-56894308 | None:intergenic | 45.0% | |
| ! | TTCTGCAGGTAATGACTTGC+AGG | - | chr3.1:56893024-56893043 | MS.gene057359:intron | 45.0% |
| !! | ATTGTAGCCGCTGATTCAGA+AGG | - | chr3.1:56893269-56893288 | MS.gene057359:intron | 45.0% |
| !! | GGCACACTAGTAGTTCTAGT+CGG | - | chr3.1:56893133-56893152 | MS.gene057359:CDS | 45.0% |
| !! | TGTCTAGGATGGTATTGGTG+TGG | - | chr3.1:56892469-56892488 | MS.gene057359:intron | 45.0% |
| ACAATCAAGTAGGCACTCCG+AGG | + | chr3.1:56894022-56894041 | None:intergenic | 50.0% | |
| CTTCTCACTGAGACCTGCTT+CGG | + | chr3.1:56893363-56893382 | None:intergenic | 50.0% | |
| GCTACTGCATTGGGCAACTT+TGG | - | chr3.1:56892781-56892800 | MS.gene057359:CDS | 50.0% | |
| GTCTTCATGGGGGATGGTTA+AGG | - | chr3.1:56894164-56894183 | MS.gene057359:intron | 50.0% | |
| TAGAAGTGAGACCTTGGGGA+GGG | + | chr3.1:56893501-56893520 | None:intergenic | 50.0% | |
| TTAGAAGTGAGACCTTGGGG+AGG | + | chr3.1:56893502-56893521 | None:intergenic | 50.0% | |
| TTATCGAGTTTGCGAAGGGC+TGG | + | chr3.1:56893077-56893096 | None:intergenic | 50.0% | |
| TTCAGCGGCAAGAAGAGAAG+TGG | - | chr3.1:56893315-56893334 | MS.gene057359:CDS | 50.0% | |
| TTCTCACTGAGACCTGCTTC+GGG | + | chr3.1:56893362-56893381 | None:intergenic | 50.0% | |
| !! | AGCCGCTGATTCAGAAGGTT+CGG | - | chr3.1:56893274-56893293 | MS.gene057359:intron | 50.0% |
| !! | TGGGATTAGGCGTTGATCTG+TGG | + | chr3.1:56894128-56894147 | None:intergenic | 50.0% |
| ACTCGAGATTGCAAACCGCG+TGG | - | chr3.1:56894068-56894087 | MS.gene057359:intron | 55.0% | |
| AGCGGCAAGAAGAGAAGTGG+TGG | - | chr3.1:56893318-56893337 | MS.gene057359:CDS | 55.0% | |
| GGCCGAACCTTCTGAATCAG+CGG | + | chr3.1:56893279-56893298 | None:intergenic | 55.0% | |
| TGAGACCTGCTTCGGGAACA+CGG | + | chr3.1:56893355-56893374 | None:intergenic | 55.0% | |
| ! | AGGTAATGACTTGCAGGCCC+AGG | - | chr3.1:56893030-56893049 | MS.gene057359:intron | 55.0% |
| !! | TCCTTGAAGCATCGGTTCCC+TGG | - | chr3.1:56894249-56894268 | MS.gene057359:CDS | 55.0% |
| AGACCTGCTTCGGGAACACG+GGG | + | chr3.1:56893353-56893372 | None:intergenic | 60.0% | |
| CGAGTTTGCGAAGGGCTGGA+AGG | + | chr3.1:56893073-56893092 | None:intergenic | 60.0% | |
| CGCGCGCTTGCAGAGAATGT+AGG | + | chr3.1:56893808-56893827 | None:intergenic | 60.0% | |
| GAGACCTGCTTCGGGAACAC+GGG | + | chr3.1:56893354-56893373 | None:intergenic | 60.0% | |
| GCCAGGGAACCGATGCTTCA+AGG | + | chr3.1:56894253-56894272 | None:intergenic | 60.0% | |
| TGCTTCGGGAACACGGGGAA+CGG | + | chr3.1:56893348-56893367 | None:intergenic | 60.0% | |
| CTTCGGGAACACGGGGAACG+GGG | + | chr3.1:56893346-56893365 | None:intergenic | 65.0% | |
| GCTTCGGGAACACGGGGAAC+GGG | + | chr3.1:56893347-56893366 | None:intergenic | 65.0% | |
| GTTCCCCGTGTTCCCGAAGC+AGG | - | chr3.1:56893347-56893366 | MS.gene057359:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 56891921 | 56894317 | 56891921 | ID=MS.gene057359 |
| chr3.1 | mRNA | 56891921 | 56894317 | 56891921 | ID=MS.gene057359.t1;Parent=MS.gene057359 |
| chr3.1 | exon | 56894197 | 56894317 | 56894197 | ID=MS.gene057359.t1.exon1;Parent=MS.gene057359.t1 |
| chr3.1 | CDS | 56894197 | 56894317 | 56894197 | ID=cds.MS.gene057359.t1;Parent=MS.gene057359.t1 |
| chr3.1 | exon | 56893303 | 56893456 | 56893303 | ID=MS.gene057359.t1.exon2;Parent=MS.gene057359.t1 |
| chr3.1 | CDS | 56893303 | 56893456 | 56893303 | ID=cds.MS.gene057359.t1;Parent=MS.gene057359.t1 |
| chr3.1 | exon | 56893132 | 56893206 | 56893132 | ID=MS.gene057359.t1.exon3;Parent=MS.gene057359.t1 |
| chr3.1 | CDS | 56893132 | 56893206 | 56893132 | ID=cds.MS.gene057359.t1;Parent=MS.gene057359.t1 |
| chr3.1 | exon | 56892730 | 56893020 | 56892730 | ID=MS.gene057359.t1.exon4;Parent=MS.gene057359.t1 |
| chr3.1 | CDS | 56892730 | 56893020 | 56892730 | ID=cds.MS.gene057359.t1;Parent=MS.gene057359.t1 |
| chr3.1 | exon | 56891921 | 56892277 | 56891921 | ID=MS.gene057359.t1.exon5;Parent=MS.gene057359.t1 |
| chr3.1 | CDS | 56891921 | 56892277 | 56891921 | ID=cds.MS.gene057359.t1;Parent=MS.gene057359.t1 |
| Gene Sequence |
| Protein sequence |
