AlfalfaGEDB | MS.gene61977

M. sativa cultivar XinJiangDaYe / MS.gene61977

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61977.t1	XP_003610438.1	87.9	636	75	1	1	634	81	716	9.50E-266	926

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61977.t1	G7JJ78	87.9	636	75	1	1	634	81	716	6.8e-266	926.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049397	MS.gene61977	0.843566	1.29E-58	-1.69E-46
MS.gene049596	MS.gene61977	0.825104	5.62E-54	-1.69E-46
MS.gene049622	MS.gene61977	0.823052	1.71E-53	-1.69E-46
MS.gene049660	MS.gene61977	0.815156	1.07E-51	-1.69E-46
MS.gene04985	MS.gene61977	0.833578	4.92E-56	-1.69E-46
MS.gene049989	MS.gene61977	0.923856	1.53E-89	-1.69E-46
MS.gene050297	MS.gene61977	0.903437	3.47E-79	-1.69E-46
MS.gene05054	MS.gene61977	0.817511	3.17E-52	-1.69E-46
MS.gene050648	MS.gene61977	0.824695	7.02E-54	-1.69E-46
MS.gene051087	MS.gene61977	0.805494	1.30E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61977.t1	MTR_4g132160	89.780	636	63	1	1	634	81	716	0.0	1137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61977.t1	AT2G16270	30.170	411	179	16	12	392	73	405	8.62e-25	110
MS.gene61977.t1	AT1G16630	28.738	428	188	17	6	386	87	444	8.15e-23	104

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Find 117 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCAGTTTATGAAAC+CGG	0.441090	8.2:-2100900	None:intergenic
AAACAAATTACCTATCCCCT+AGG	0.602260	8.2:-2100319	MS.gene61977:CDS
AAAGCCGCTAATGGAATTAG+AGG	0.426519	8.2:-2100273	MS.gene61977:CDS
AAATATGCCAAGTTCAAATT+CGG	0.415242	8.2:-2099262	MS.gene61977:CDS
AAATCTTCAGACTCACAACT+CGG	0.613094	8.2:+2100641	None:intergenic
AACAACTTCAGCATGATATG+GGG	0.647874	8.2:-2099569	MS.gene61977:CDS
AATGAAGGAATTGTGGCCTA+GGG	0.570744	8.2:+2100303	None:intergenic
ACACACGGATGACCAAGCAG+TGG	0.696307	8.2:-2099109	MS.gene61977:CDS
ACACAGATGCTGCAATTAGA+GGG	0.588423	8.2:-2099074	MS.gene61977:CDS
ACCAGAGCAGGCTTTGCAAC+TGG	0.419706	8.2:-2099337	MS.gene61977:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTCATCCCAATAATTTA+TGG	-	chr8.2:2099848-2099867	MS.gene61977:CDS	30.0%
AGCAACAACTGAATAAACTA+AGG	-	chr8.2:2099829-2099848	MS.gene61977:CDS	30.0%
AGGTCATCCCAATAATTTAT+GGG	-	chr8.2:2099849-2099868	MS.gene61977:CDS	30.0%
ATACATTGTTAGACTTCCAT+AGG	+	chr8.2:2098640-2098659	None:intergenic	30.0%
ATTACACCGTCTAAAAGAAT+TGG	-	chr8.2:2100685-2100704	MS.gene61977:CDS	30.0%
ATTTCAATCACAAATTCTCC+AGG	-	chr8.2:2097313-2097332	MS.gene61977:intron	30.0%
CAAGATTAGAACACTATGAA+AGG	-	chr8.2:2100249-2100268	MS.gene61977:CDS	30.0%
CATGTTGTAGTTAATAAGAG+AGG	+	chr8.2:2099246-2099265	None:intergenic	30.0%
GAAATTCAAAATGAAGTCTG+TGG	-	chr8.2:2098060-2098079	MS.gene61977:intron	30.0%
TACCATGTATGTAAACATGT+AGG	+	chr8.2:2099458-2099477	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	2096413	2100909	2096413	ID=MS.gene61977
chr8.2	mRNA	2096413	2100909	2096413	ID=MS.gene61977.t1;Parent=MS.gene61977
chr8.2	exon	2099007	2100909	2099007	ID=MS.gene61977.t1.exon1;Parent=MS.gene61977.t1
chr8.2	CDS	2099007	2100909	2099007	ID=cds.MS.gene61977.t1;Parent=MS.gene61977.t1
chr8.2	exon	2096413	2096444	2096413	ID=MS.gene61977.t1.exon2;Parent=MS.gene61977.t1
chr8.2	CDS	2096413	2096444	2096413	ID=cds.MS.gene61977.t1;Parent=MS.gene61977.t1

Gene Sequence

>MS.gene61977

ATGAAACCGGCAAAGGTTAGATCGCCAGCTGCAACATCGAAATCAACGAAGAATTTCATGTCACCGACGATCTCTGCTTCCTTCAAGATGGCTGAGTCACCGAGAAAGAAAATCCTTGCGGAGAGGAACGAGCCTACTCCTTCTTCCGACAACAAAATTCATGTTCGGAAGGTAACTTTTTCTGATCCTTTAGAACAGAAAAGGGTTGATACTGGTTCATTAGATGGGAATAGTAGAGTCCTCTTTCCGAGTTGTGAGTCTGAAGATTTGAGTGATGAAAATTTGTCTGAGTCCAATGTTGTTCCTATGGATGATTTGTCGTATAATGCTATGCGTATGAATGTTCCTATGATTCTAAACAATGATTCAGATTTTTCATTTGAAACTGTGCACACTGAACCCTCATTTCAAAATGTTCCTTTGATTAGAAACAATGATTCAGATTTTGTTAACCTTGACCCTACTTTTAAGCTTAGTCCAGCCGCGGCTACTCCTCCAGTTTCTTACACTGCTAATGCCGTAGACCCTCTTGTTGATGCTGATTCCTCTGTGCCACCTTATGACCCTAAAACAAATTACCTATCCCCTAGGCCACAATTCCTTCATTACAAACCAAAGCCGCTAATGGAATTAGAGGACAGTTTCATTATGTCAGGAAACTTTTCAGATACAGATGTTACCGAGGATACTCAGTCTGATGAATCCCAGAAGGAATCATCGGAGGATGTTTCTTCTGATGAAACTGTGAAGCAGGAAGATGATCAAATTTCTGAACAAAGTCCTGTTAGGACTCTCTTGCCAGAGAAAACAGTTGAAGCAAAGGAGCTGCAAAAACCACGCTTTTCTTTGAGATCGAAGGCTGCTGTTCTAATTTTGCTTCTTTCAATTGCTTTTGTATCAATTTCAATCACAAATTCTCCAGGGTCTCATGCTGTGTTGGAAGACTTTTATGAGGCTTATGAGTCTTCTGAACTTTCGGAGTTTGCAAAGGCTAACTTTGATCAATTCTCCCAGTTTGCAAAAGCGAATTTTGCAGGTTTCGTTCGGAATTCGCATATTTGGTATACTAAGTCGCTGTCTTCCATCTCTGAGTTGATTTCAGATGTTAGAGGAGTGCGTAATTTGTCCCAGTTGCAGTACTTTAACTTGACTGTGCTGCACGACTATAGTGCAGTTAATCAGAGTCCTATCTTTGGTCGCGGTGAAAATAAAATAGGCGACACTCGCCCTCCTGTTCAAGAAACACACGTTGCCTCAGAGATTTCGATGGATGAGTATTTTGGTGATATTTTAGCAGAGCATTATGAAGTATATGAAGAACAACTTCAGCATGATATGGGGATGAACACTGGATTTGAAAATGCATTGGATGCTCAAGAATCTGAGGAAGTGCACAATGGACAACCTGCTACTTATATAGAATCAGAAGAGCAGGCTGAACATGAACATTTAGATGCAAAGTTGGAAGAAGAAATTGATGCTAGCTTTGAAGTTGAAGATGCTTTAGAGTCTGAGGAAGCACTCGCGGGCCAATCTACTACTTTGGTAGAACCAGAGCAGGCTTTGCAACTGGTTGAATCAGTATACTCAGAAGGAGACCAAACACCAAGGGCTGATGATCATGAAAATATGCCAAGTTCAAATTCGGAAATTCAAAATGAAGTCTGTGGTGAAGGTAATGTAGATACAAAGCTGGAACAAGAAAATGATGTTAAATTAATTGGCAAAGAAAGTGATGCTGATCTCAAGCATTCACCAGTTTCAGAAGTTGCTGAGATACACACGGATGACCAAGCAGTGGGAATATCAGCTGACACAGATGCTGCAATTAGAGGGAATGAGCAGCTATTAGAAGCAACTCACATTCCTCAAAACATTGTGCTATACTTGCTGCTTTGTGCAGGTACGGTTTTTATTGCAGGTGCAACTTTTAACTGGTCAAGGAAAGTTAAAAGCAGAAGCAAAAAGTTTACTAGCTCTGTGGAGAAGCCTAAGATTGGATCTGAGGACAAGAAGATTTCCCCAGATAAGCCATCTATGAGGAATGTGCCTGTAGAAATGGACGTGGTTGGAGAATCGTGCCCTTCAGAAATGAGCAGCTTTGAGAAGAGCTCATCTAACAGAGTGAATCATTTGAGTGAAGCTACCAGCGTAGAGAAAAAGCGCCGGAATTACCACAGGAGAGAGTCGTTGGCCTCTTCTGACTACTCCATGGGTTCACCATCCTATGGAAGTCTAACAATGTATGAGAAAATTCCAAAGGTGAGTATTGTTGATTGTTAATTGAATCATCATTTTATCTTTGTTAACTGTTAACATGTTGAATTGTTGCTAATGTGTTTCATCATATTGTTTTTTATAGGGACGCGGCGAAGAGGAGATAGTTACTCCGGTTAGGCGTTCAAGTAGGATTAGGAGCATTGCCACTTCTCCTGTATAAGCGGTTTTTGCTGGCTCTCCTACATCACCTAACCTGCGCATAACTTTGCATACCTGCAATGTGAATGTATTTCTATTTTCTATTAACAGAAGTGTCTTGTCTTCTGAATCTTCTAGCTTTACTATTGACTTTGTAGCTTTAGAATTATTTTTTATTAATGAATGATGGTTGCTCCAACAAAATTCTGGATTTTTTATTTATTATTACTTCCTCACTTTCACTCTAATGCCAAATCAACATAAACATCTTAATCTTAATAAGCATAGTGTGGCAATTTTGCATGATGTGACATAAATATTATGATTGGTGCTGCTTCTGAAGCGTTAGAGGGGTGGTGCCACCAAGAAACCCAGCTAGGTTTTTATTTGTTATTCAAGAGAGACAATTCAACCTCTCTTATTAACTACAACATGACTTTTTTACCAGGGGTATTTGTTAAGCAGAAGAGTGTATTCTTAAAATTGGTAGTGGATAGTTTTTTTTCTTATCTATTTGCAGAATTTGTTGACTATTTGTAAGTGCAAAGCTGTCTTTTCTTCTTTTTATGTAAAATTTAGCGCTGAGTTTAATAGCAAATAAATGAGGTTGTTTACGCAAAGACGCCTACATGTTTACATACATGGTAACGTAAACTAGTGTTCAATTAACCGTTGATATATCATGTTGTATTGAACACCCGTTGATAATATCATGTTGCATTGAACACATACCTACATATTTAACTAGTGTTTACTTACGTGGTAAACTAGTGTTCGTTAACCGTTGATATATCATGTTGCATTAAACACATTTTCATTAATATGTTATAAACAATTTTCAATAAAAAAAAATAATTTAAAAACTAACACACGACAAGCCAAACCTTTTATAGAATTAACAACTTGATTTCTCTTCATGTAAACTTAAGTTCTATGGAAAGCCACAAAACTTGATTTCTCATAAGTAAAGAAGAGCAAAAATCCTAAAAGAAACGAATAGCAACAACTGAATAAACTAAGGTCATCCCAATAATTTATGGGGCTTTTTTGTTTAGAATACAAATATTTTTTCTTGCAAACTCTAATAATTGGTGGTTTTAGCGGCCATACTCTTGAATCAGGCTGAAGTTCATATGATGACACATTTATCTAACATTAAATATGTTAATTTAAATTTTAGATTAATTTGTATTGAGTAAAACTTTTACACACATCTAATCAAATCATGTCGAATATATATTGGGTTAATTATGTTTATAGTCCCTATAAAATAGCGACCTTGTAAGTTTAGTCCCTACTTAATTTTAATAGCATTTTTAGTCCCTATAAAAAAAATTACTTATAATTTTAGTCCCTGCTAAAACAAAGTTTGATTAATTATCCTTAAACTCTTAAATTTTTGAACGATTTTTTTGAGACAAGATTAGAACACTATGAAAGGTTCGTTTACTAAAATTTAGAATTTTCTGACATGAAATGAATTAAATATGAATTTTTTAAAACGACAAAAGTTAAAGATAAAAAGTAATAAAATCTGGATGTAGAAATCAAATTTTGCAATAATTTTTTGCGGACGAACTTTTAGTAATGTTCTAAACATGTCTGCAAAAAATTGTTCAAAAATTTAAGAGTTTAAGCATAAATTAAACGAATTTGAATTGAGTAGGGACTAATACTCAATGCAGAAAAACAAAATTAGGGACTAAAAATGCTATTAAAATTAAGTAGGGACTAAACTTACAAGGTCGCTATTTTATAGGGACTAGAAACATAATTAACCCATATATATTTTAAGAATTAATGTATAAAATTGGTATCATGAAGTAATTTGATTGAAAACATGTCTAAAAAAACATTACACCGTCTAAAAGAATTGGTATGATTGAATGGTTGATTACGTGGCTCATATTTTTAACTCACAAATATAATTTTATTAATGATTGATTTATTTCTTGATTTTGTAATTAATTGGCCATTTGAATGCTTGATTTTTTTTTACTCATATTTAGCTCACAAATATGATTTAAATTAATGCTATTAATGATAGATCGAATGCTTGATTCAGTGGCTCATATTTAA

Protein sequence

>MS.gene61977.t1

MKPAKVRSPAATSKSTKNFMSPTISASFKMAESPRKKILAERNEPTPSSDNKIHVRKVTFSDPLEQKRVDTGSLDGNSRVLFPSCESEDLSDENLSESNVVPMDDLSYNAMRMNVPMILNNDSDFSFETVHTEPSFQNVPLIRNNDSDFVNLDPTFKLSPAAATPPVSYTANAVDPLVDADSSVPPYDPKTNYLSPRPQFLHYKPKPLMELEDSFIMSGNFSDTDVTEDTQSDESQKESSEDVSSDETVKQEDDQISEQSPVRTLLPEKTVEAKELQKPRFSLRSKAAVLILLLSIAFVSISITNSPGSHAVLEDFYEAYESSELSEFAKANFDQFSQFAKANFAGFVRNSHIWYTKSLSSISELISDVRGVRNLSQLQYFNLTVLHDYSAVNQSPIFGRGENKIGDTRPPVQETHVASEISMDEYFGDILAEHYEVYEEQLQHDMGMNTGFENALDAQESEEVHNGQPATYIESEEQAEHEHLDAKLEEEIDASFEVEDALESEEALAGQSTTLVEPEQALQLVESVYSEGDQTPRADDHENMPSSNSEIQNEVCGEGNVDTKLEQENDVKLIGKESDADLKHSPVSEVAEIHTDDQAVGISADTDAAIRGNEQLLEATHIPQNIVLYLLLCADRMLDSVAHI