Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79251.t1 | KEH42561.1 | 96.7 | 608 | 17 | 1 | 1 | 608 | 1 | 605 | 2.5e-310 | 1074.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79251.t1 | Q9SJW9 | 37.8 | 622 | 302 | 13 | 3 | 606 | 6 | 560 | 7.8e-77 | 289.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79251.t1 | A0A072VLQ6 | 96.7 | 608 | 17 | 1 | 1 | 608 | 1 | 605 | 1.8e-310 | 1074.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene79251 | 0.818898 | 1.54E-52 | -1.69E-46 |
| MS.gene049397 | MS.gene79251 | 0.828604 | 8.20E-55 | -1.69E-46 |
| MS.gene049596 | MS.gene79251 | 0.829377 | 5.33E-55 | -1.69E-46 |
| MS.gene049660 | MS.gene79251 | 0.810611 | 1.06E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene79251 | 0.875286 | 3.47E-68 | -1.69E-46 |
| MS.gene050297 | MS.gene79251 | 0.875516 | 2.90E-68 | -1.69E-46 |
| MS.gene05054 | MS.gene79251 | 0.817364 | 3.43E-52 | -1.69E-46 |
| MS.gene05124 | MS.gene79251 | 0.845569 | 3.74E-59 | -1.69E-46 |
| MS.gene051339 | MS.gene79251 | 0.801085 | 1.06E-48 | -1.69E-46 |
| MS.gene051629 | MS.gene79251 | 0.80894 | 2.42E-50 | -1.69E-46 |
| MS.gene051742 | MS.gene79251 | 0.858672 | 7.01E-63 | -1.69E-46 |
| MS.gene051816 | MS.gene79251 | 0.831665 | 1.47E-55 | -1.69E-46 |
| MS.gene051914 | MS.gene79251 | 0.829325 | 5.48E-55 | -1.69E-46 |
| MS.gene051955 | MS.gene79251 | 0.891548 | 3.59E-74 | -1.69E-46 |
| MS.gene052143 | MS.gene79251 | 0.847799 | 9.20E-60 | -1.69E-46 |
| MS.gene052308 | MS.gene79251 | 0.881527 | 2.23E-70 | -1.69E-46 |
| MS.gene052367 | MS.gene79251 | 0.918766 | 1.04E-86 | -1.69E-46 |
| MS.gene053173 | MS.gene79251 | 0.894103 | 3.38E-75 | -1.69E-46 |
| MS.gene053348 | MS.gene79251 | 0.859034 | 5.47E-63 | -1.69E-46 |
| MS.gene053416 | MS.gene79251 | 0.870478 | 1.42E-66 | -1.69E-46 |
| MS.gene053417 | MS.gene79251 | 0.871174 | 8.36E-67 | -1.69E-46 |
| MS.gene05369 | MS.gene79251 | 0.850484 | 1.65E-60 | -1.69E-46 |
| MS.gene054459 | MS.gene79251 | 0.803283 | 3.75E-49 | -1.69E-46 |
| MS.gene054551 | MS.gene79251 | 0.889199 | 3.00E-73 | -1.69E-46 |
| MS.gene054552 | MS.gene79251 | 0.848714 | 5.14E-60 | -1.69E-46 |
| MS.gene054593 | MS.gene79251 | 0.882665 | 8.61E-71 | -1.69E-46 |
| MS.gene054633 | MS.gene79251 | 0.828363 | 9.37E-55 | -1.69E-46 |
| MS.gene054662 | MS.gene79251 | 0.825386 | 4.82E-54 | -1.69E-46 |
| MS.gene054885 | MS.gene79251 | 0.801073 | 1.07E-48 | -1.69E-46 |
| MS.gene055308 | MS.gene79251 | 0.880423 | 5.56E-70 | -1.69E-46 |
| MS.gene055411 | MS.gene79251 | 0.806869 | 6.67E-50 | -1.69E-46 |
| MS.gene055578 | MS.gene79251 | 0.899096 | 2.78E-77 | -1.69E-46 |
| MS.gene055579 | MS.gene79251 | 0.813436 | 2.56E-51 | -1.69E-46 |
| MS.gene055957 | MS.gene79251 | 0.867684 | 1.14E-65 | -1.69E-46 |
| MS.gene056041 | MS.gene79251 | 0.919582 | 3.76E-87 | -1.69E-46 |
| MS.gene056042 | MS.gene79251 | 0.818554 | 1.84E-52 | -1.69E-46 |
| MS.gene05640 | MS.gene79251 | 0.878639 | 2.39E-69 | -1.69E-46 |
| MS.gene056526 | MS.gene79251 | 0.888219 | 7.17E-73 | -1.69E-46 |
| MS.gene056528 | MS.gene79251 | 0.843483 | 1.36E-58 | -1.69E-46 |
| MS.gene05652 | MS.gene79251 | 0.831187 | 1.92E-55 | -1.69E-46 |
| MS.gene05732 | MS.gene79251 | 0.834625 | 2.69E-56 | -1.69E-46 |
| MS.gene057358 | MS.gene79251 | 0.840554 | 8.11E-58 | -1.69E-46 |
| MS.gene057359 | MS.gene79251 | 0.832756 | 7.88E-56 | -1.69E-46 |
| MS.gene057367 | MS.gene79251 | 0.822123 | 2.80E-53 | -1.69E-46 |
| MS.gene057458 | MS.gene79251 | 0.85827 | 9.24E-63 | -1.69E-46 |
| MS.gene058013 | MS.gene79251 | 0.822607 | 2.16E-53 | -1.69E-46 |
| MS.gene058128 | MS.gene79251 | 0.82035 | 7.19E-53 | -1.69E-46 |
| MS.gene058196 | MS.gene79251 | 0.839703 | 1.35E-57 | -1.69E-46 |
| MS.gene058197 | MS.gene79251 | 0.807174 | 5.75E-50 | -1.69E-46 |
| MS.gene058198 | MS.gene79251 | 0.807677 | 4.50E-50 | -1.69E-46 |
| MS.gene058818 | MS.gene79251 | 0.823315 | 1.48E-53 | -1.69E-46 |
| MS.gene058827 | MS.gene79251 | 0.851248 | 1.00E-60 | -1.69E-46 |
| MS.gene058828 | MS.gene79251 | 0.823965 | 1.04E-53 | -1.69E-46 |
| MS.gene058849 | MS.gene79251 | 0.811044 | 8.53E-51 | -1.69E-46 |
| MS.gene058853 | MS.gene79251 | 0.860175 | 2.48E-63 | -1.69E-46 |
| MS.gene059300 | MS.gene79251 | 0.833254 | 5.93E-56 | -1.69E-46 |
| MS.gene059553 | MS.gene79251 | 0.827797 | 1.28E-54 | -1.69E-46 |
| MS.gene059616 | MS.gene79251 | 0.804777 | 1.84E-49 | -1.69E-46 |
| MS.gene060473 | MS.gene79251 | 0.91535 | 6.54E-85 | -1.69E-46 |
| MS.gene060565 | MS.gene79251 | 0.908195 | 2.23E-81 | -1.69E-46 |
| MS.gene06057 | MS.gene79251 | 0.846816 | 1.71E-59 | -1.69E-46 |
| MS.gene06093 | MS.gene79251 | 0.875806 | 2.30E-68 | -1.69E-46 |
| MS.gene061099 | MS.gene79251 | 0.88411 | 2.54E-71 | -1.69E-46 |
| MS.gene061260 | MS.gene79251 | 0.93635 | 2.00E-97 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79251.t1 | MTR_1g070170 | 96.711 | 608 | 17 | 1 | 1 | 608 | 1 | 605 | 0.0 | 1171 |
| MS.gene79251.t1 | MTR_6g077680 | 28.571 | 546 | 313 | 12 | 88 | 604 | 25 | 522 | 7.47e-49 | 178 |
| MS.gene79251.t1 | MTR_6g077680 | 28.119 | 537 | 301 | 12 | 88 | 591 | 25 | 509 | 4.36e-46 | 172 |
| MS.gene79251.t1 | MTR_6g477680 | 38.298 | 188 | 98 | 4 | 88 | 260 | 9 | 193 | 1.65e-32 | 130 |
| MS.gene79251.t1 | MTR_6g477680 | 40.698 | 86 | 51 | 0 | 519 | 604 | 355 | 440 | 9.48e-13 | 70.9 |
| MS.gene79251.t1 | MTR_6g077630 | 40.909 | 88 | 50 | 1 | 519 | 604 | 69 | 156 | 2.70e-12 | 65.5 |
| MS.gene79251.t1 | MTR_6g079130 | 36.905 | 84 | 49 | 1 | 148 | 231 | 18 | 97 | 3.18e-12 | 66.6 |
| MS.gene79251.t1 | MTR_6g079130 | 40.909 | 88 | 50 | 1 | 519 | 604 | 121 | 208 | 5.87e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79251.t1 | AT2G31270 | 52.830 | 212 | 82 | 3 | 410 | 606 | 352 | 560 | 6.97e-57 | 201 |
| MS.gene79251.t1 | AT2G31270 | 51.852 | 216 | 88 | 4 | 39 | 245 | 41 | 249 | 9.23e-50 | 182 |
| MS.gene79251.t1 | AT3G54710 | 50.311 | 161 | 77 | 3 | 87 | 247 | 27 | 184 | 1.85e-43 | 162 |
| MS.gene79251.t1 | AT3G54710 | 42.205 | 263 | 110 | 8 | 384 | 607 | 218 | 477 | 1.18e-40 | 155 |
Find 120 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGCAGGTATGAGAATT+TGG | 0.208186 | 1.4:+57258846 | MS.gene79251:intron |
| AGTGATGCTCTTAAGGATTC+AGG | 0.231310 | 1.4:-57261187 | None:intergenic |
| ATTAGATTGTTGCGATTAAA+AGG | 0.237039 | 1.4:+57258898 | MS.gene79251:CDS |
| TCAGTTAAAGTTTCAATCTT+TGG | 0.243781 | 1.4:-57258949 | None:intergenic |
| TGTTGCAGGTATGAGAATTT+GGG | 0.273987 | 1.4:+57258847 | MS.gene79251:intron |
| AAGCGCAACGCCGCGGTTGC+GGG | 0.283254 | 1.4:-57258513 | None:intergenic |
| GCTAAGTTGTTGTCTGAATC+TGG | 0.304619 | 1.4:+57259215 | MS.gene79251:CDS |
| TTCTTCAAGTGATGCTCTTA+AGG | 0.317807 | 1.4:-57261194 | None:intergenic |
| GAGAGGCAACTGCCGGCTTC+TGG | 0.332877 | 1.4:-57260028 | None:intergenic |
| GAGCACGACTCAATGAGTTT+TGG | 0.341785 | 1.4:+57259264 | MS.gene79251:CDS |
| CGGCGTTGCGCTTTCGATAT+CGG | 0.348179 | 1.4:+57258523 | MS.gene79251:CDS |
| GAGGTTTACCCATGCTCATT+TGG | 0.363872 | 1.4:+57259067 | MS.gene79251:CDS |
| GCATCAAACTCAACTGCATC+AGG | 0.365765 | 1.4:-57259194 | None:intergenic |
| GAAGCACATCCTGCGCTTCA+TGG | 0.367874 | 1.4:+57260233 | MS.gene79251:CDS |
| CGCAGGATGTGCTTCACTAC+TGG | 0.375185 | 1.4:-57260225 | None:intergenic |
| GAGCTGGTAGAGTTGTCATC+TGG | 0.375541 | 1.4:-57260449 | None:intergenic |
| AGATTGAAACTTTAACTGAT+AGG | 0.395153 | 1.4:+57258953 | MS.gene79251:CDS |
| CTCAAGCTTGACTCTGAAAC+AGG | 0.405661 | 1.4:-57260143 | None:intergenic |
| AAAGCGCAACGCCGCGGTTG+CGG | 0.415732 | 1.4:-57258514 | None:intergenic |
| TTTGCTTTCTGTATACTCAA+TGG | 0.428293 | 1.4:-57260309 | None:intergenic |
| AGCTGGTAGAGTTGTCATCT+GGG | 0.434221 | 1.4:-57260448 | None:intergenic |
| ACCGAATGGAGAAGATTATC+CGG | 0.434254 | 1.4:-57260590 | None:intergenic |
| CGCCTTCTCAGAAATCCATT+CGG | 0.435905 | 1.4:-57261024 | None:intergenic |
| TGAATCATGTTAAAGAGCTT+AGG | 0.436584 | 1.4:-57260790 | None:intergenic |
| AAGAATAGCAATGGAGGAAC+GGG | 0.437696 | 1.4:+57260717 | MS.gene79251:CDS |
| CCCGGATAATCTTCTCCATT+CGG | 0.449170 | 1.4:+57260589 | MS.gene79251:CDS |
| GTTAAAGAGCTTAGGGAGGC+TGG | 0.452098 | 1.4:-57260782 | None:intergenic |
| GTAGCTGACATCAGCCTGGC+TGG | 0.454247 | 1.4:-57260389 | None:intergenic |
| GCCTTCTCAGAAATCCATTC+GGG | 0.459518 | 1.4:-57261023 | None:intergenic |
| CAATGAAATGACGTCGTTGA+AGG | 0.463806 | 1.4:+57258592 | MS.gene79251:CDS |
| ACATGACTTTCTGAGTTAGC+AGG | 0.467209 | 1.4:-57259969 | None:intergenic |
| GGCTCAGGCAGCATTTCCTC+TGG | 0.468683 | 1.4:-57259831 | None:intergenic |
| TTGCGGGTTCGCATCGGTGG+TGG | 0.469410 | 1.4:-57258497 | None:intergenic |
| TGAAGGGAAAATCTGCTAGA+AGG | 0.477915 | 1.4:+57258609 | MS.gene79251:CDS |
| GTGATGCTCTTAAGGATTCA+GGG | 0.478740 | 1.4:-57261186 | None:intergenic |
| GAGTATACAGAAAGCAAAGA+TGG | 0.479585 | 1.4:+57260314 | MS.gene79251:CDS |
| TCATGCTTTGGACGACTGAA+TGG | 0.481298 | 1.4:-57259852 | None:intergenic |
| GGAGTAGATACAAATTTAGC+TGG | 0.483928 | 1.4:-57260368 | None:intergenic |
| GAATCATGTTAAAGAGCTTA+GGG | 0.484737 | 1.4:-57260789 | None:intergenic |
| CTGAGAAAACCGCCTTCTGA+AGG | 0.492237 | 1.4:-57260063 | None:intergenic |
| AACCAACTTGTCCGGCGAGC+TGG | 0.493098 | 1.4:-57260465 | None:intergenic |
| TGTACAAGAGGATCATGCTT+TGG | 0.499528 | 1.4:-57259864 | None:intergenic |
| TTTATACTAACATGAAGATC+CGG | 0.500484 | 1.4:-57259170 | None:intergenic |
| CCGCGGTTGCGGGTTCGCAT+CGG | 0.503017 | 1.4:-57258503 | None:intergenic |
| TTAAGCGCCCACCTCGTTCA+AGG | 0.503396 | 1.4:+57260486 | MS.gene79251:CDS |
| GATTGCTATTAAGAAGTTGT+TGG | 0.505832 | 1.4:+57259118 | MS.gene79251:CDS |
| TTCTTAGCTTGTGAGATAGC+TGG | 0.511965 | 1.4:-57260742 | None:intergenic |
| TAAAATATCGCCATCTGAGT+TGG | 0.516325 | 1.4:+57260190 | MS.gene79251:CDS |
| GCTTCAGCTGATGTCTCAGC+AGG | 0.517698 | 1.4:-57259999 | None:intergenic |
| CTAAGTTGTTGTCTGAATCT+GGG | 0.523632 | 1.4:+57259216 | MS.gene79251:CDS |
| GTTGCAGGTATGAGAATTTG+GGG | 0.525927 | 1.4:+57258848 | MS.gene79251:intron |
| TTCTTAATAGCAATCGCCTC+AGG | 0.526378 | 1.4:-57259110 | None:intergenic |
| AATGAAATGACGTCGTTGAA+GGG | 0.529956 | 1.4:+57258593 | MS.gene79251:CDS |
| AGGTGTAGCTAGTGTAACTC+TGG | 0.532203 | 1.4:-57260279 | None:intergenic |
| CCGTTCTGTTATCACAAAAG+AGG | 0.537384 | 1.4:+57260834 | MS.gene79251:CDS |
| TTTGGATCTGGTGTTGTGTG+AGG | 0.537780 | 1.4:-57258390 | None:intergenic |
| AAAGAATAGCAATGGAGGAA+CGG | 0.540705 | 1.4:+57260716 | MS.gene79251:CDS |
| TCCCGAATGGATTTCTGAGA+AGG | 0.541497 | 1.4:+57261022 | MS.gene79251:CDS |
| TTTGGACGACTGAATGGCTC+AGG | 0.542814 | 1.4:-57259846 | None:intergenic |
| TCAACTGTGCCAAATGAGCA+TGG | 0.543850 | 1.4:-57259076 | None:intergenic |
| GGGCGCTTAACCAACTTGTC+CGG | 0.545875 | 1.4:-57260473 | None:intergenic |
| CGAGACTAGCATATCTCCAC+TGG | 0.546554 | 1.4:-57261051 | None:intergenic |
| TACCAGCTCGCCGGACAAGT+TGG | 0.547251 | 1.4:+57260463 | MS.gene79251:CDS |
| GGATATTAGAAAAGTTGCTA+AGG | 0.548634 | 1.4:+57258544 | MS.gene79251:CDS |
| GATGATTCATTGCTCTTCCG+AGG | 0.549354 | 1.4:-57258650 | None:intergenic |
| CGGTTGCGGGTTCGCATCGG+TGG | 0.552701 | 1.4:-57258500 | None:intergenic |
| CCGAATGGAGAAGATTATCC+GGG | 0.552846 | 1.4:-57260589 | None:intergenic |
| GGCATAAGAGAGGCAACTGC+CGG | 0.559596 | 1.4:-57260035 | None:intergenic |
| TGCCTCAATCCTTCAGAAGG+CGG | 0.563769 | 1.4:+57260054 | MS.gene79251:CDS |
| TGTTAGAATTAGTTCCCGAA+TGG | 0.564240 | 1.4:+57261009 | MS.gene79251:CDS |
| TCAATGACCTTGAACGAGGT+GGG | 0.568176 | 1.4:-57260493 | None:intergenic |
| TCTGAAGAACCATGAAGCGC+AGG | 0.570831 | 1.4:-57260242 | None:intergenic |
| AAACAGGCACAACTGAGGGT+TGG | 0.574849 | 1.4:-57260127 | None:intergenic |
| TTCAATGACCTTGAACGAGG+TGG | 0.577604 | 1.4:-57260494 | None:intergenic |
| AAATCACATTGGCTTCTCCT+CGG | 0.580298 | 1.4:+57258633 | MS.gene79251:CDS |
| TCTGAGAAGGCGGCCTCCAG+TGG | 0.580751 | 1.4:+57261035 | MS.gene79251:CDS |
| AACCGCCTTCTGAAGGATTG+AGG | 0.583856 | 1.4:-57260056 | None:intergenic |
| TCTGAAACAGGCACAACTGA+GGG | 0.587099 | 1.4:-57260131 | None:intergenic |
| GATATTAGAAAAGTTGCTAA+GGG | 0.589889 | 1.4:+57258545 | MS.gene79251:CDS |
| TTATGCCTCAATCCTTCAGA+AGG | 0.598089 | 1.4:+57260051 | MS.gene79251:CDS |
| AAAAGAAAGAATAGCAATGG+AGG | 0.601040 | 1.4:+57260711 | MS.gene79251:CDS |
| AATTTGTATCTACTCCAGCC+AGG | 0.603332 | 1.4:+57260375 | MS.gene79251:CDS |
| CTATCTCACAAGCTAAGAAG+CGG | 0.603356 | 1.4:+57260746 | MS.gene79251:CDS |
| TGCTAGAAGGCAAATCACAT+TGG | 0.603766 | 1.4:+57258622 | MS.gene79251:CDS |
| CATGACTTTCTGAGTTAGCA+GGG | 0.605336 | 1.4:-57259968 | None:intergenic |
| TGGAGTTGACATAGCATCAA+CGG | 0.606325 | 1.4:-57260348 | None:intergenic |
| TGACAACTCTACCAGCTCGC+CGG | 0.606746 | 1.4:+57260454 | MS.gene79251:CDS |
| AGTATACAGAAAGCAAAGAT+GGG | 0.606980 | 1.4:+57260315 | MS.gene79251:CDS |
| AGGTGTAGCTGACATCAGCC+TGG | 0.607269 | 1.4:-57260393 | None:intergenic |
| GGTTTCATCATGTGTACAAG+AGG | 0.610647 | 1.4:-57259876 | None:intergenic |
| CATCAAACTCAACTGCATCA+GGG | 0.610741 | 1.4:-57259193 | None:intergenic |
| ACACTATCATACCTCTGGGT+GGG | 0.612575 | 1.4:-57259291 | None:intergenic |
| CAACTGTGCCAAATGAGCAT+GGG | 0.612717 | 1.4:-57259075 | None:intergenic |
| GCGAACGAGTTGTATGAAGC+CGG | 0.612998 | 1.4:+57259151 | MS.gene79251:CDS |
| CTCTGAAACAGGCACAACTG+AGG | 0.615353 | 1.4:-57260132 | None:intergenic |
| TTCACTGCAGAGAATGATGA+GGG | 0.616272 | 1.4:-57259900 | None:intergenic |
| CCGATGCGAACCCGCAACCG+CGG | 0.620178 | 1.4:+57258503 | MS.gene79251:CDS |
| CGAATGGATTTCTGAGAAGG+CGG | 0.621345 | 1.4:+57261025 | MS.gene79251:CDS |
| GATTCTGTAACCAACTCAGA+TGG | 0.624141 | 1.4:-57260200 | None:intergenic |
| TACTTCTATCAACAATATCA+CGG | 0.628510 | 1.4:-57260885 | None:intergenic |
| TTTCACTGCAGAGAATGATG+AGG | 0.630337 | 1.4:-57259901 | None:intergenic |
| CACACTATCATACCTCTGGG+TGG | 0.639190 | 1.4:-57259292 | None:intergenic |
| GTAGCTAGTGTAACTCTGGA+TGG | 0.641322 | 1.4:-57260275 | None:intergenic |
| TGGATTGAAACAGATTGAAG+TGG | 0.649528 | 1.4:-57260107 | None:intergenic |
| CTGTTTCAGAGTCAAGCTTG+AGG | 0.653446 | 1.4:+57260144 | MS.gene79251:CDS |
| AATTTCAATGACCTTGAACG+AGG | 0.653533 | 1.4:-57260497 | None:intergenic |
| TTGCAGGTATGAGAATTTGG+GGG | 0.655048 | 1.4:+57258849 | MS.gene79251:intron |
| GACTAGCATATCTCCACTGG+AGG | 0.665848 | 1.4:-57261048 | None:intergenic |
| ACGTGCTTCTAGTGACATTG+CGG | 0.666388 | 1.4:+57259935 | MS.gene79251:CDS |
| GCTGGTAGAGTTGTCATCTG+GGG | 0.673094 | 1.4:-57260447 | None:intergenic |
| ACTGCAGAGAATGATGAGGG+AGG | 0.673341 | 1.4:-57259897 | None:intergenic |
| GAGGATAAATTCCACCTCTG+AGG | 0.675454 | 1.4:+57260163 | MS.gene79251:CDS |
| AATCTGGGACTATGTCTCTG+AGG | 0.683217 | 1.4:+57259231 | MS.gene79251:CDS |
| ATAGGGTGATGAAGTTCCAG+AGG | 0.688686 | 1.4:+57259815 | MS.gene79251:intron |
| GTGTTGTGTGAGGATTGTGA+AGG | 0.688886 | 1.4:-57258380 | None:intergenic |
| ATATCGAAAGCGCAACGCCG+CGG | 0.697463 | 1.4:-57258520 | None:intergenic |
| GAAGGATTGAGGCATAAGAG+AGG | 0.703019 | 1.4:-57260045 | None:intergenic |
| AATGGAGAAGATTATCCGGG+AGG | 0.714359 | 1.4:-57260586 | None:intergenic |
| TCATGTTAAAGAGCTTAGGG+AGG | 0.717982 | 1.4:-57260786 | None:intergenic |
| TTCTATCAACAATATCACGG+TGG | 0.721589 | 1.4:-57260882 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCAAAAATTTGTATTT+AGG | + | chr1.4:57259007-57259026 | MS.gene79251:intron | 10.0% |
| !!! | TTTTTGTTGATTTATTTTAT+GGG | + | chr1.4:57258817-57258836 | MS.gene79251:intron | 10.0% |
| !!! | TTTTTTGTTGATTTATTTTA+TGG | + | chr1.4:57258816-57258835 | MS.gene79251:intron | 10.0% |
| !! | AATAATATGCAATTTCTAAA+AGG | - | chr1.4:57259772-57259791 | None:intergenic | 15.0% |
| !! | TCACTCATAAAAATAAATAA+AGG | - | chr1.4:57260655-57260674 | None:intergenic | 15.0% |
| !! | AATATAATCAATACAATGAC+AGG | - | chr1.4:57261130-57261149 | None:intergenic | 20.0% |
| !! | ATATAATCAATACAATGACA+GGG | - | chr1.4:57261129-57261148 | None:intergenic | 20.0% |
| !! | TGAAAGTAACTTAAATTCTA+AGG | + | chr1.4:57259676-57259695 | MS.gene79251:intron | 20.0% |
| !!! | AAAAGATGCTTTTATGTATA+GGG | + | chr1.4:57259798-57259817 | MS.gene79251:intron | 20.0% |
| !!! | ATTTTGAATTTTCAGATCTA+GGG | + | chr1.4:57258694-57258713 | MS.gene79251:intron | 20.0% |
| !!! | TAAAAGATGCTTTTATGTAT+AGG | + | chr1.4:57259797-57259816 | MS.gene79251:intron | 20.0% |
| !!! | TAGTTTTGCATTATATTTGT+GGG | + | chr1.4:57259421-57259440 | MS.gene79251:intron | 20.0% |
| !!! | TCTTAAGCATTTTGAAATTT+TGG | + | chr1.4:57258769-57258788 | MS.gene79251:intron | 20.0% |
| !!! | TTTTTATGATTTGTTTGATG+TGG | + | chr1.4:57258736-57258755 | MS.gene79251:intron | 20.0% |
| ! | AAACCAATCAACATAATAAG+TGG | - | chr1.4:57259465-57259484 | None:intergenic | 25.0% |
| ! | AGATTGAAACTTTAACTGAT+AGG | + | chr1.4:57258953-57258972 | MS.gene79251:CDS | 25.0% |
| ! | ATGAAAAATGAAAATGATGC+TGG | + | chr1.4:57260530-57260549 | MS.gene79251:CDS | 25.0% |
| ! | ATTAGATTGTTGCGATTAAA+AGG | + | chr1.4:57258898-57258917 | MS.gene79251:CDS | 25.0% |
| ! | GATATTAGAAAAGTTGCTAA+GGG | + | chr1.4:57258545-57258564 | MS.gene79251:CDS | 25.0% |
| ! | TAATGCTAATTCTGAGTAAA+AGG | + | chr1.4:57259616-57259635 | MS.gene79251:intron | 25.0% |
| ! | TACTTCTATCAACAATATCA+CGG | - | chr1.4:57260888-57260907 | None:intergenic | 25.0% |
| ! | TATCCACTTATTATGTTGAT+TGG | + | chr1.4:57259459-57259478 | MS.gene79251:intron | 25.0% |
| ! | TCAGTTAAAGTTTCAATCTT+TGG | - | chr1.4:57258952-57258971 | None:intergenic | 25.0% |
| ! | TGGAATTGTAAATTCATAAC+AGG | - | chr1.4:57261102-57261121 | None:intergenic | 25.0% |
| ! | TTTATACTAACATGAAGATC+CGG | - | chr1.4:57259173-57259192 | None:intergenic | 25.0% |
| ! | TTTCTATGAAACATAATCGA+CGG | + | chr1.4:57260915-57260934 | MS.gene79251:intron | 25.0% |
| !! | AAATTTTGGATCTAGGTTTT+TGG | + | chr1.4:57258783-57258802 | MS.gene79251:intron | 25.0% |
| !! | ACTTATTATGTTGATTGGTT+TGG | + | chr1.4:57259464-57259483 | MS.gene79251:intron | 25.0% |
| !! | CATTTTGAATTTTCAGATCT+AGG | + | chr1.4:57258693-57258712 | MS.gene79251:intron | 25.0% |
| !! | TTGATATTTCATTTTGCTTG+TGG | + | chr1.4:57259371-57259390 | MS.gene79251:intron | 25.0% |
| !!! | ATTCAAAATGCTTACTTTTC+AGG | - | chr1.4:57258683-57258702 | None:intergenic | 25.0% |
| !!! | CATTTTGAAATTTTGGATCT+AGG | + | chr1.4:57258776-57258795 | MS.gene79251:intron | 25.0% |
| !!! | CTAGTTTTGCATTATATTTG+TGG | + | chr1.4:57259420-57259439 | MS.gene79251:intron | 25.0% |
| !!! | GCATCATTTTCATTTTTCAT+AGG | - | chr1.4:57260530-57260549 | None:intergenic | 25.0% |
| !!! | TAGGATTTTTTTTCTGATTG+TGG | + | chr1.4:57259026-57259045 | MS.gene79251:intron | 25.0% |
| !!! | TTTTTTTCTGATTGTGGTTT+TGG | + | chr1.4:57259032-57259051 | MS.gene79251:intron | 25.0% |
| AAAAATGAAAATGATGCTGG+CGG | + | chr1.4:57260533-57260552 | MS.gene79251:CDS | 30.0% | |
| AAAAGAAAGAATAGCAATGG+AGG | + | chr1.4:57260711-57260730 | MS.gene79251:CDS | 30.0% | |
| AACTTCACCTAAGAAAACAA+GGG | - | chr1.4:57260970-57260989 | None:intergenic | 30.0% | |
| AGTATACAGAAAGCAAAGAT+GGG | + | chr1.4:57260315-57260334 | MS.gene79251:CDS | 30.0% | |
| GAATCATGTTAAAGAGCTTA+GGG | - | chr1.4:57260792-57260811 | None:intergenic | 30.0% | |
| GGAAAAAGAAAGAATAGCAA+TGG | + | chr1.4:57260708-57260727 | MS.gene79251:CDS | 30.0% | |
| GGATATTAGAAAAGTTGCTA+AGG | + | chr1.4:57258544-57258563 | MS.gene79251:CDS | 30.0% | |
| TGAATCATGTTAAAGAGCTT+AGG | - | chr1.4:57260793-57260812 | None:intergenic | 30.0% | |
| TTCTATGAAACATAATCGAC+GGG | + | chr1.4:57260916-57260935 | MS.gene79251:intron | 30.0% | |
| TTTGCTTTCTGTATACTCAA+TGG | - | chr1.4:57260312-57260331 | None:intergenic | 30.0% | |
| ! | GATTGCTATTAAGAAGTTGT+TGG | + | chr1.4:57259118-57259137 | MS.gene79251:CDS | 30.0% |
| ! | GTCATAAAACTTCTTTTAGG+TGG | - | chr1.4:57260428-57260447 | None:intergenic | 30.0% |
| ! | TTGTCACTATGAGATTTTGA+TGG | + | chr1.4:57259551-57259570 | MS.gene79251:intron | 30.0% |
| !! | ATTTTCAGATCTAGGGTTTT+TGG | + | chr1.4:57258701-57258720 | MS.gene79251:intron | 30.0% |
| !!! | GTTGAAGTTTATTTTACCTG+AGG | + | chr1.4:57259094-57259113 | MS.gene79251:CDS | 30.0% |
| !!! | GTTTTTGAGGTTAGTTCAAT+TGG | - | chr1.4:57258455-57258474 | None:intergenic | 30.0% |
| !!! | TTATGGGTTTTTTTTGTTGC+AGG | + | chr1.4:57258833-57258852 | MS.gene79251:intron | 30.0% |
| AAAAACCCCAGAAAAATCAC+TGG | + | chr1.4:57258469-57258488 | MS.gene79251:CDS | 35.0% | |
| AAAGAATAGCAATGGAGGAA+CGG | + | chr1.4:57260716-57260735 | MS.gene79251:CDS | 35.0% | |
| AATGAAATGACGTCGTTGAA+GGG | + | chr1.4:57258593-57258612 | MS.gene79251:CDS | 35.0% | |
| AATTTCAATGACCTTGAACG+AGG | - | chr1.4:57260500-57260519 | None:intergenic | 35.0% | |
| ACTTCACCTAAGAAAACAAG+GGG | - | chr1.4:57260969-57260988 | None:intergenic | 35.0% | |
| CAACTTCACCTAAGAAAACA+AGG | - | chr1.4:57260971-57260990 | None:intergenic | 35.0% | |
| CTAAGTTGTTGTCTGAATCT+GGG | + | chr1.4:57259216-57259235 | MS.gene79251:CDS | 35.0% | |
| GAGTATACAGAAAGCAAAGA+TGG | + | chr1.4:57260314-57260333 | MS.gene79251:CDS | 35.0% | |
| GGAGTAGATACAAATTTAGC+TGG | - | chr1.4:57260371-57260390 | None:intergenic | 35.0% | |
| GTTTGGTAGAAAGAATAGTC+AGG | + | chr1.4:57259481-57259500 | MS.gene79251:intron | 35.0% | |
| TAAAATATCGCCATCTGAGT+TGG | + | chr1.4:57260190-57260209 | MS.gene79251:CDS | 35.0% | |
| TCTCGTAAGTGTCTTTCTTT+AGG | + | chr1.4:57261069-57261088 | MS.gene79251:intron | 35.0% | |
| TGGATTGAAACAGATTGAAG+TGG | - | chr1.4:57260110-57260129 | None:intergenic | 35.0% | |
| TGTTAGAATTAGTTCCCGAA+TGG | + | chr1.4:57261009-57261028 | MS.gene79251:CDS | 35.0% | |
| TGTTGCAGGTATGAGAATTT+GGG | + | chr1.4:57258847-57258866 | MS.gene79251:intron | 35.0% | |
| TTCTATCAACAATATCACGG+TGG | - | chr1.4:57260885-57260904 | None:intergenic | 35.0% | |
| TTCTTCAAGTGATGCTCTTA+AGG | - | chr1.4:57261197-57261216 | None:intergenic | 35.0% | |
| TTGTTGCAGGTATGAGAATT+TGG | + | chr1.4:57258846-57258865 | MS.gene79251:intron | 35.0% | |
| ! | AACTCAGATGGCGATATTTT+AGG | - | chr1.4:57260191-57260210 | None:intergenic | 35.0% |
| ! | ACTCAGATGGCGATATTTTA+GGG | - | chr1.4:57260190-57260209 | None:intergenic | 35.0% |
| ! | AGATTTTGAGCTACGAAGAT+TGG | - | chr1.4:57258420-57258439 | None:intergenic | 35.0% |
| ! | CCTCTTTTGTGATAACAGAA+CGG | - | chr1.4:57260837-57260856 | None:intergenic | 35.0% |
| ! | GATTTTGAGCTACGAAGATT+GGG | - | chr1.4:57258419-57258438 | None:intergenic | 35.0% |
| ! | GCGGTTTTCTCAGAAATTAA+AGG | + | chr1.4:57260073-57260092 | MS.gene79251:CDS | 35.0% |
| ! | GGGGTCATAAAACTTCTTTT+AGG | - | chr1.4:57260431-57260450 | None:intergenic | 35.0% |
| ! | TGACATTTTTGATATCCTCC+CGG | + | chr1.4:57260571-57260590 | MS.gene79251:CDS | 35.0% |
| !! | GTATACTCAATGGTTTTGCT+AGG | - | chr1.4:57260302-57260321 | None:intergenic | 35.0% |
| !! | GTTTTGGATGAGTTTTTAGG+AGG | + | chr1.4:57259048-57259067 | MS.gene79251:intron | 35.0% |
| !!! | AAGATTGGGTTTTTTGGATC+TGG | - | chr1.4:57258405-57258424 | None:intergenic | 35.0% |
| !!! | ACTAAACCCCTTGTTTTCTT+AGG | + | chr1.4:57260960-57260979 | MS.gene79251:intron | 35.0% |
| !!! | GTGGTTTTGGATGAGTTTTT+AGG | + | chr1.4:57259045-57259064 | MS.gene79251:intron | 35.0% |
| !!! | TAGCTTTTGATGATGAGTTG+AGG | + | chr1.4:57259723-57259742 | MS.gene79251:intron | 35.0% |
| !!! | TGATTTTTCTGGGGTTTTTG+AGG | - | chr1.4:57258468-57258487 | None:intergenic | 35.0% |
| AAAGAATAGTCAGGTGTGGT+GGG | + | chr1.4:57259490-57259509 | MS.gene79251:intron | 40.0% | |
| AAGAATAGCAATGGAGGAAC+GGG | + | chr1.4:57260717-57260736 | MS.gene79251:CDS | 40.0% | |
| AATTTGTATCTACTCCAGCC+AGG | + | chr1.4:57260375-57260394 | MS.gene79251:CDS | 40.0% | |
| ACATGACTTTCTGAGTTAGC+AGG | - | chr1.4:57259972-57259991 | None:intergenic | 40.0% | |
| ACCGAATGGAGAAGATTATC+CGG | - | chr1.4:57260593-57260612 | None:intergenic | 40.0% | |
| AGTGATGCTCTTAAGGATTC+AGG | - | chr1.4:57261190-57261209 | None:intergenic | 40.0% | |
| ATGCACACTATCATACCTCT+GGG | - | chr1.4:57259298-57259317 | None:intergenic | 40.0% | |
| CAATACAATGACAGGGTTGT+TGG | - | chr1.4:57261122-57261141 | None:intergenic | 40.0% | |
| CAATGAAATGACGTCGTTGA+AGG | + | chr1.4:57258592-57258611 | MS.gene79251:CDS | 40.0% | |
| CATCAAACTCAACTGCATCA+GGG | - | chr1.4:57259196-57259215 | None:intergenic | 40.0% | |
| CATGACTTTCTGAGTTAGCA+GGG | - | chr1.4:57259971-57259990 | None:intergenic | 40.0% | |
| CCGTTCTGTTATCACAAAAG+AGG | + | chr1.4:57260834-57260853 | MS.gene79251:CDS | 40.0% | |
| CTATCTCACAAGCTAAGAAG+CGG | + | chr1.4:57260746-57260765 | MS.gene79251:CDS | 40.0% | |
| GATTCTGTAACCAACTCAGA+TGG | - | chr1.4:57260203-57260222 | None:intergenic | 40.0% | |
| GCTAAGTTGTTGTCTGAATC+TGG | + | chr1.4:57259215-57259234 | MS.gene79251:CDS | 40.0% | |
| GGTTTCATCATGTGTACAAG+AGG | - | chr1.4:57259879-57259898 | None:intergenic | 40.0% | |
| GTAGAAAGAATAGTCAGGTG+TGG | + | chr1.4:57259486-57259505 | MS.gene79251:intron | 40.0% | |
| GTGATGCTCTTAAGGATTCA+GGG | - | chr1.4:57261189-57261208 | None:intergenic | 40.0% | |
| GTTGCAGGTATGAGAATTTG+GGG | + | chr1.4:57258848-57258867 | MS.gene79251:intron | 40.0% | |
| TCATGTTAAAGAGCTTAGGG+AGG | - | chr1.4:57260789-57260808 | None:intergenic | 40.0% | |
| TGAAGGGAAAATCTGCTAGA+AGG | + | chr1.4:57258609-57258628 | MS.gene79251:CDS | 40.0% | |
| TGCTAGAAGGCAAATCACAT+TGG | + | chr1.4:57258622-57258641 | MS.gene79251:CDS | 40.0% | |
| TGGAGTTGACATAGCATCAA+CGG | - | chr1.4:57260351-57260370 | None:intergenic | 40.0% | |
| TGTACAAGAGGATCATGCTT+TGG | - | chr1.4:57259867-57259886 | None:intergenic | 40.0% | |
| TTATGCCTCAATCCTTCAGA+AGG | + | chr1.4:57260051-57260070 | MS.gene79251:CDS | 40.0% | |
| TTCACTGCAGAGAATGATGA+GGG | - | chr1.4:57259903-57259922 | None:intergenic | 40.0% | |
| TTCTTAATAGCAATCGCCTC+AGG | - | chr1.4:57259113-57259132 | None:intergenic | 40.0% | |
| TTGCAGGTATGAGAATTTGG+GGG | + | chr1.4:57258849-57258868 | MS.gene79251:intron | 40.0% | |
| TTTCACTGCAGAGAATGATG+AGG | - | chr1.4:57259904-57259923 | None:intergenic | 40.0% | |
| ! | AAACGAAAGAGCATACCGAA+TGG | - | chr1.4:57260607-57260626 | None:intergenic | 40.0% |
| ! | CTTCTCCAGTGATTTTTCTG+GGG | - | chr1.4:57258477-57258496 | None:intergenic | 40.0% |
| ! | CTTTTTCCTGAATCTGCAGA+AGG | - | chr1.4:57260696-57260715 | None:intergenic | 40.0% |
| ! | GCTTCTCCAGTGATTTTTCT+GGG | - | chr1.4:57258478-57258497 | None:intergenic | 40.0% |
| ! | TGAAGCTTTTAACCAGAAGC+CGG | + | chr1.4:57260016-57260035 | MS.gene79251:CDS | 40.0% |
| !! | AAATCACATTGGCTTCTCCT+CGG | + | chr1.4:57258633-57258652 | MS.gene79251:CDS | 40.0% |
| !! | CATAGCATCAACGGTTTTGA+AGG | - | chr1.4:57260342-57260361 | None:intergenic | 40.0% |
| !! | TTCTTAGCTTGTGAGATAGC+TGG | - | chr1.4:57260745-57260764 | None:intergenic | 40.0% |
| !!! | GCTACGAAGATTGGGTTTTT+TGG | - | chr1.4:57258411-57258430 | None:intergenic | 40.0% |
| AATGGAGAAGATTATCCGGG+AGG | - | chr1.4:57260589-57260608 | None:intergenic | 45.0% | |
| ACACTATCATACCTCTGGGT+GGG | - | chr1.4:57259294-57259313 | None:intergenic | 45.0% | |
| ACCATTCCTTCTGCAGATTC+AGG | + | chr1.4:57260687-57260706 | MS.gene79251:intron | 45.0% | |
| ACGTGCTTCTAGTGACATTG+CGG | + | chr1.4:57259935-57259954 | MS.gene79251:CDS | 45.0% | |
| AGCTGGTAGAGTTGTCATCT+GGG | - | chr1.4:57260451-57260470 | None:intergenic | 45.0% | |
| AGGTGTAGCTAGTGTAACTC+TGG | - | chr1.4:57260282-57260301 | None:intergenic | 45.0% | |
| ATAGGGTGATGAAGTTCCAG+AGG | + | chr1.4:57259815-57259834 | MS.gene79251:intron | 45.0% | |
| CAACTGTGCCAAATGAGCAT+GGG | - | chr1.4:57259078-57259097 | None:intergenic | 45.0% | |
| CATGCACACTATCATACCTC+TGG | - | chr1.4:57259299-57259318 | None:intergenic | 45.0% | |
| CCCGGATAATCTTCTCCATT+CGG | + | chr1.4:57260589-57260608 | MS.gene79251:CDS | 45.0% | |
| CCGAATGGAGAAGATTATCC+GGG | - | chr1.4:57260592-57260611 | None:intergenic | 45.0% | |
| CGCCTTCTCAGAAATCCATT+CGG | - | chr1.4:57261027-57261046 | None:intergenic | 45.0% | |
| CTGTTTCAGAGTCAAGCTTG+AGG | + | chr1.4:57260144-57260163 | MS.gene79251:CDS | 45.0% | |
| GAAAGAATAGTCAGGTGTGG+TGG | + | chr1.4:57259489-57259508 | MS.gene79251:intron | 45.0% | |
| GAAGGATTGAGGCATAAGAG+AGG | - | chr1.4:57260048-57260067 | None:intergenic | 45.0% | |
| GAGGATAAATTCCACCTCTG+AGG | + | chr1.4:57260163-57260182 | MS.gene79251:CDS | 45.0% | |
| GAGGTTTACCCATGCTCATT+TGG | + | chr1.4:57259067-57259086 | MS.gene79251:CDS | 45.0% | |
| GAGTAAAAGGCCAAGTCTGT+GGG | + | chr1.4:57259629-57259648 | MS.gene79251:intron | 45.0% | |
| GATGATTCATTGCTCTTCCG+AGG | - | chr1.4:57258653-57258672 | None:intergenic | 45.0% | |
| GCATCAAACTCAACTGCATC+AGG | - | chr1.4:57259197-57259216 | None:intergenic | 45.0% | |
| GCCTTCTCAGAAATCCATTC+GGG | - | chr1.4:57261026-57261045 | None:intergenic | 45.0% | |
| GTAGCTAGTGTAACTCTGGA+TGG | - | chr1.4:57260278-57260297 | None:intergenic | 45.0% | |
| GTGTTGTGTGAGGATTGTGA+AGG | - | chr1.4:57258383-57258402 | None:intergenic | 45.0% | |
| TCAACTGTGCCAAATGAGCA+TGG | - | chr1.4:57259079-57259098 | None:intergenic | 45.0% | |
| TCAATGACCTTGAACGAGGT+GGG | - | chr1.4:57260496-57260515 | None:intergenic | 45.0% | |
| TCCTGAATCTGCAGAAGGAA+TGG | - | chr1.4:57260691-57260710 | None:intergenic | 45.0% | |
| TGAGTAAAAGGCCAAGTCTG+TGG | + | chr1.4:57259628-57259647 | MS.gene79251:intron | 45.0% | |
| TTCAATGACCTTGAACGAGG+TGG | - | chr1.4:57260497-57260516 | None:intergenic | 45.0% | |
| ! | AACAAAGTGTCCCACAGACT+TGG | - | chr1.4:57259642-57259661 | None:intergenic | 45.0% |
| ! | AATCTGGGACTATGTCTCTG+AGG | + | chr1.4:57259231-57259250 | MS.gene79251:CDS | 45.0% |
| ! | CGAATGGATTTCTGAGAAGG+CGG | + | chr1.4:57261025-57261044 | MS.gene79251:CDS | 45.0% |
| ! | GAGCACGACTCAATGAGTTT+TGG | + | chr1.4:57259264-57259283 | MS.gene79251:CDS | 45.0% |
| ! | GGCTTCTCCAGTGATTTTTC+TGG | - | chr1.4:57258479-57258498 | None:intergenic | 45.0% |
| ! | TCATGCTTTGGACGACTGAA+TGG | - | chr1.4:57259855-57259874 | None:intergenic | 45.0% |
| ! | TCCCGAATGGATTTCTGAGA+AGG | + | chr1.4:57261022-57261041 | MS.gene79251:CDS | 45.0% |
| ! | TCTGAAACAGGCACAACTGA+GGG | - | chr1.4:57260134-57260153 | None:intergenic | 45.0% |
| !! | CGATATTTTAGGGACCTCAG+AGG | - | chr1.4:57260180-57260199 | None:intergenic | 45.0% |
| !! | CTCAAGCTTGACTCTGAAAC+AGG | - | chr1.4:57260146-57260165 | None:intergenic | 45.0% |
| !! | CTTTTAGGTGGCTTCAATGC+AGG | - | chr1.4:57260416-57260435 | None:intergenic | 45.0% |
| !! | TATTTTAGGGACCTCAGAGG+TGG | - | chr1.4:57260177-57260196 | None:intergenic | 45.0% |
| !! | TTTGGATCTGGTGTTGTGTG+AGG | - | chr1.4:57258393-57258412 | None:intergenic | 45.0% |
| !!! | GGGGGAGTTTTTTGATAGCT+TGG | + | chr1.4:57258867-57258886 | MS.gene79251:CDS | 45.0% |
| AAACAGGCACAACTGAGGGT+TGG | - | chr1.4:57260130-57260149 | None:intergenic | 50.0% | |
| ACTGCAGAGAATGATGAGGG+AGG | - | chr1.4:57259900-57259919 | None:intergenic | 50.0% | |
| CACACTATCATACCTCTGGG+TGG | - | chr1.4:57259295-57259314 | None:intergenic | 50.0% | |
| CGAGACTAGCATATCTCCAC+TGG | - | chr1.4:57261054-57261073 | None:intergenic | 50.0% | |
| CTGAGAAAACCGCCTTCTGA+AGG | - | chr1.4:57260066-57260085 | None:intergenic | 50.0% | |
| GACTAGCATATCTCCACTGG+AGG | - | chr1.4:57261051-57261070 | None:intergenic | 50.0% | |
| GAGCTGGTAGAGTTGTCATC+TGG | - | chr1.4:57260452-57260471 | None:intergenic | 50.0% | |
| GCGAACGAGTTGTATGAAGC+CGG | + | chr1.4:57259151-57259170 | MS.gene79251:CDS | 50.0% | |
| GCTGGTAGAGTTGTCATCTG+GGG | - | chr1.4:57260450-57260469 | None:intergenic | 50.0% | |
| GTTAAAGAGCTTAGGGAGGC+TGG | - | chr1.4:57260785-57260804 | None:intergenic | 50.0% | |
| TCTGAAGAACCATGAAGCGC+AGG | - | chr1.4:57260245-57260264 | None:intergenic | 50.0% | |
| TGCCTCAATCCTTCAGAAGG+CGG | + | chr1.4:57260054-57260073 | MS.gene79251:CDS | 50.0% | |
| TTTGGACGACTGAATGGCTC+AGG | - | chr1.4:57259849-57259868 | None:intergenic | 50.0% | |
| ! | AACCGCCTTCTGAAGGATTG+AGG | - | chr1.4:57260059-57260078 | None:intergenic | 50.0% |
| !! | CTCTGAAACAGGCACAACTG+AGG | - | chr1.4:57260135-57260154 | None:intergenic | 50.0% |
| !!! | GTTTTGGAAATCCCACCCAG+AGG | + | chr1.4:57259280-57259299 | MS.gene79251:CDS | 50.0% |
| AGGTGTAGCTGACATCAGCC+TGG | - | chr1.4:57260396-57260415 | None:intergenic | 55.0% | |
| CGCAGGATGTGCTTCACTAC+TGG | - | chr1.4:57260228-57260247 | None:intergenic | 55.0% | |
| CGGCGTTGCGCTTTCGATAT+CGG | + | chr1.4:57258523-57258542 | MS.gene79251:CDS | 55.0% | |
| GAAGCACATCCTGCGCTTCA+TGG | + | chr1.4:57260233-57260252 | MS.gene79251:CDS | 55.0% | |
| GCTTCAGCTGATGTCTCAGC+AGG | - | chr1.4:57260002-57260021 | None:intergenic | 55.0% | |
| GGCATAAGAGAGGCAACTGC+CGG | - | chr1.4:57260038-57260057 | None:intergenic | 55.0% | |
| GGGCGCTTAACCAACTTGTC+CGG | - | chr1.4:57260476-57260495 | None:intergenic | 55.0% | |
| TGACAACTCTACCAGCTCGC+CGG | + | chr1.4:57260454-57260473 | MS.gene79251:CDS | 55.0% | |
| TTAAGCGCCCACCTCGTTCA+AGG | + | chr1.4:57260486-57260505 | MS.gene79251:CDS | 55.0% | |
| ! | ATATCGAAAGCGCAACGCCG+CGG | - | chr1.4:57258523-57258542 | None:intergenic | 55.0% |
| AACCAACTTGTCCGGCGAGC+TGG | - | chr1.4:57260468-57260487 | None:intergenic | 60.0% | |
| GGCTCAGGCAGCATTTCCTC+TGG | - | chr1.4:57259834-57259853 | None:intergenic | 60.0% | |
| GTAGCTGACATCAGCCTGGC+TGG | - | chr1.4:57260392-57260411 | None:intergenic | 60.0% | |
| TACCAGCTCGCCGGACAAGT+TGG | + | chr1.4:57260463-57260482 | MS.gene79251:CDS | 60.0% | |
| AAAGCGCAACGCCGCGGTTG+CGG | - | chr1.4:57258517-57258536 | None:intergenic | 65.0% | |
| TCTGAGAAGGCGGCCTCCAG+TGG | + | chr1.4:57261035-57261054 | MS.gene79251:CDS | 65.0% | |
| ! | TTGCGGGTTCGCATCGGTGG+TGG | - | chr1.4:57258500-57258519 | None:intergenic | 65.0% |
| !! | GAGAGGCAACTGCCGGCTTC+TGG | - | chr1.4:57260031-57260050 | None:intergenic | 65.0% |
| AAGCGCAACGCCGCGGTTGC+GGG | - | chr1.4:57258516-57258535 | None:intergenic | 70.0% | |
| CCGATGCGAACCCGCAACCG+CGG | + | chr1.4:57258503-57258522 | MS.gene79251:CDS | 70.0% | |
| CCGCGGTTGCGGGTTCGCAT+CGG | - | chr1.4:57258506-57258525 | None:intergenic | 70.0% | |
| CGGTTGCGGGTTCGCATCGG+TGG | - | chr1.4:57258503-57258522 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 57258359 | 57261225 | 57258359 | ID=MS.gene79251 |
| chr1.4 | mRNA | 57258359 | 57261225 | 57258359 | ID=MS.gene79251.t1;Parent=MS.gene79251 |
| chr1.4 | exon | 57258359 | 57258687 | 57258359 | ID=MS.gene79251.t1.exon1;Parent=MS.gene79251.t1 |
| chr1.4 | CDS | 57258359 | 57258687 | 57258359 | ID=cds.MS.gene79251.t1;Parent=MS.gene79251.t1 |
| chr1.4 | exon | 57258855 | 57258974 | 57258855 | ID=MS.gene79251.t1.exon2;Parent=MS.gene79251.t1 |
| chr1.4 | CDS | 57258855 | 57258974 | 57258855 | ID=cds.MS.gene79251.t1;Parent=MS.gene79251.t1 |
| chr1.4 | exon | 57259067 | 57259301 | 57259067 | ID=MS.gene79251.t1.exon3;Parent=MS.gene79251.t1 |
| chr1.4 | CDS | 57259067 | 57259301 | 57259067 | ID=cds.MS.gene79251.t1;Parent=MS.gene79251.t1 |
| chr1.4 | exon | 57259819 | 57260610 | 57259819 | ID=MS.gene79251.t1.exon4;Parent=MS.gene79251.t1 |
| chr1.4 | CDS | 57259819 | 57260610 | 57259819 | ID=cds.MS.gene79251.t1;Parent=MS.gene79251.t1 |
| chr1.4 | exon | 57260703 | 57260904 | 57260703 | ID=MS.gene79251.t1.exon5;Parent=MS.gene79251.t1 |
| chr1.4 | CDS | 57260703 | 57260904 | 57260703 | ID=cds.MS.gene79251.t1;Parent=MS.gene79251.t1 |
| chr1.4 | exon | 57260982 | 57261072 | 57260982 | ID=MS.gene79251.t1.exon6;Parent=MS.gene79251.t1 |
| chr1.4 | CDS | 57260982 | 57261072 | 57260982 | ID=cds.MS.gene79251.t1;Parent=MS.gene79251.t1 |
| chr1.4 | exon | 57261168 | 57261225 | 57261168 | ID=MS.gene79251.t1.exon7;Parent=MS.gene79251.t1 |
| chr1.4 | CDS | 57261168 | 57261225 | 57261168 | ID=cds.MS.gene79251.t1;Parent=MS.gene79251.t1 |
| Gene Sequence |
| Protein sequence |
