Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49312.t1 | KEH42561.1 | 96.5 | 608 | 18 | 1 | 1 | 608 | 1 | 605 | 1.3e-309 | 1071.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49312.t1 | Q9SJW9 | 37.8 | 622 | 302 | 13 | 3 | 606 | 6 | 560 | 7.8e-77 | 289.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49312.t1 | A0A072VLQ6 | 96.5 | 608 | 18 | 1 | 1 | 608 | 1 | 605 | 9.1e-310 | 1071.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene49312 | 0.804976 | 1.67E-49 | -1.69E-46 |
| MS.gene049397 | MS.gene49312 | 0.829258 | 5.69E-55 | -1.69E-46 |
| MS.gene049596 | MS.gene49312 | 0.812243 | 4.68E-51 | -1.69E-46 |
| MS.gene049622 | MS.gene49312 | 0.806292 | 8.83E-50 | -1.69E-46 |
| MS.gene049660 | MS.gene49312 | 0.819411 | 1.18E-52 | -1.69E-46 |
| MS.gene049989 | MS.gene49312 | 0.871653 | 5.80E-67 | -1.69E-46 |
| MS.gene050297 | MS.gene49312 | 0.862538 | 4.72E-64 | -1.69E-46 |
| MS.gene05054 | MS.gene49312 | 0.827644 | 1.40E-54 | -1.69E-46 |
| MS.gene05124 | MS.gene49312 | 0.834794 | 2.44E-56 | -1.69E-46 |
| MS.gene051339 | MS.gene49312 | 0.812333 | 4.47E-51 | -1.69E-46 |
| MS.gene051742 | MS.gene49312 | 0.853028 | 3.13E-61 | -1.69E-46 |
| MS.gene051816 | MS.gene49312 | 0.829427 | 5.18E-55 | -1.69E-46 |
| MS.gene051914 | MS.gene49312 | 0.830141 | 3.47E-55 | -1.69E-46 |
| MS.gene051955 | MS.gene49312 | 0.874665 | 5.65E-68 | -1.69E-46 |
| MS.gene052143 | MS.gene49312 | 0.838289 | 3.14E-57 | -1.69E-46 |
| MS.gene052308 | MS.gene49312 | 0.879098 | 1.64E-69 | -1.69E-46 |
| MS.gene052367 | MS.gene49312 | 0.903693 | 2.67E-79 | -1.69E-46 |
| MS.gene053173 | MS.gene49312 | 0.883858 | 3.14E-71 | -1.69E-46 |
| MS.gene053348 | MS.gene49312 | 0.858001 | 1.11E-62 | -1.69E-46 |
| MS.gene053416 | MS.gene49312 | 0.856907 | 2.34E-62 | -1.69E-46 |
| MS.gene053417 | MS.gene49312 | 0.856904 | 2.35E-62 | -1.69E-46 |
| MS.gene05369 | MS.gene49312 | 0.840388 | 8.96E-58 | -1.69E-46 |
| MS.gene054551 | MS.gene49312 | 0.880136 | 7.04E-70 | -1.69E-46 |
| MS.gene054552 | MS.gene49312 | 0.842008 | 3.36E-58 | -1.69E-46 |
| MS.gene054593 | MS.gene49312 | 0.877101 | 8.23E-69 | -1.69E-46 |
| MS.gene054633 | MS.gene49312 | 0.821824 | 3.29E-53 | -1.69E-46 |
| MS.gene054662 | MS.gene49312 | 0.817708 | 2.87E-52 | -1.69E-46 |
| MS.gene055308 | MS.gene49312 | 0.878539 | 2.59E-69 | -1.69E-46 |
| MS.gene055411 | MS.gene49312 | 0.801028 | 1.09E-48 | -1.69E-46 |
| MS.gene055578 | MS.gene49312 | 0.90524 | 5.29E-80 | -1.69E-46 |
| MS.gene055957 | MS.gene49312 | 0.869514 | 2.92E-66 | -1.69E-46 |
| MS.gene056041 | MS.gene49312 | 0.916484 | 1.69E-85 | -1.69E-46 |
| MS.gene056042 | MS.gene49312 | 0.807852 | 4.13E-50 | -1.69E-46 |
| MS.gene05640 | MS.gene49312 | 0.875918 | 2.11E-68 | -1.69E-46 |
| MS.gene056526 | MS.gene49312 | 0.88554 | 7.44E-72 | -1.69E-46 |
| MS.gene056528 | MS.gene49312 | 0.837297 | 5.65E-57 | -1.69E-46 |
| MS.gene05652 | MS.gene49312 | 0.829636 | 4.61E-55 | -1.69E-46 |
| MS.gene05732 | MS.gene49312 | 0.820452 | 6.81E-53 | -1.69E-46 |
| MS.gene057358 | MS.gene49312 | 0.836668 | 8.18E-57 | -1.69E-46 |
| MS.gene057359 | MS.gene49312 | 0.827911 | 1.20E-54 | -1.69E-46 |
| MS.gene057367 | MS.gene49312 | 0.814672 | 1.37E-51 | -1.69E-46 |
| MS.gene057458 | MS.gene49312 | 0.855732 | 5.18E-62 | -1.69E-46 |
| MS.gene058013 | MS.gene49312 | 0.823585 | 1.28E-53 | -1.69E-46 |
| MS.gene058128 | MS.gene49312 | 0.822753 | 2.00E-53 | -1.69E-46 |
| MS.gene058196 | MS.gene49312 | 0.836438 | 9.36E-57 | -1.69E-46 |
| MS.gene058197 | MS.gene49312 | 0.802384 | 5.76E-49 | -1.69E-46 |
| MS.gene058198 | MS.gene49312 | 0.802525 | 5.38E-49 | -1.69E-46 |
| MS.gene058818 | MS.gene49312 | 0.81594 | 7.15E-52 | -1.69E-46 |
| MS.gene058827 | MS.gene49312 | 0.836716 | 7.95E-57 | -1.69E-46 |
| MS.gene058828 | MS.gene49312 | 0.808345 | 3.24E-50 | -1.69E-46 |
| MS.gene058849 | MS.gene49312 | 0.812961 | 3.26E-51 | -1.69E-46 |
| MS.gene058853 | MS.gene49312 | 0.857678 | 1.39E-62 | -1.69E-46 |
| MS.gene059300 | MS.gene49312 | 0.819411 | 1.18E-52 | -1.69E-46 |
| MS.gene059553 | MS.gene49312 | 0.821279 | 4.39E-53 | -1.69E-46 |
| MS.gene059616 | MS.gene49312 | 0.809171 | 2.16E-50 | -1.69E-46 |
| MS.gene060473 | MS.gene49312 | 0.90772 | 3.73E-81 | -1.69E-46 |
| MS.gene060565 | MS.gene49312 | 0.897509 | 1.31E-76 | -1.69E-46 |
| MS.gene06057 | MS.gene49312 | 0.835693 | 1.45E-56 | -1.69E-46 |
| MS.gene06093 | MS.gene49312 | 0.868002 | 9.02E-66 | -1.69E-46 |
| MS.gene061099 | MS.gene49312 | 0.873101 | 1.91E-67 | -1.69E-46 |
| MS.gene061260 | MS.gene49312 | 0.931275 | 4.81E-94 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49312.t1 | MTR_1g070170 | 96.546 | 608 | 18 | 1 | 1 | 608 | 1 | 605 | 0.0 | 1168 |
| MS.gene49312.t1 | MTR_6g077680 | 28.205 | 546 | 315 | 12 | 88 | 604 | 25 | 522 | 7.54e-49 | 178 |
| MS.gene49312.t1 | MTR_6g077680 | 28.119 | 537 | 301 | 12 | 88 | 591 | 25 | 509 | 5.78e-46 | 172 |
| MS.gene49312.t1 | MTR_6g477680 | 38.298 | 188 | 98 | 4 | 88 | 260 | 9 | 193 | 1.62e-32 | 130 |
| MS.gene49312.t1 | MTR_6g477680 | 40.698 | 86 | 51 | 0 | 519 | 604 | 355 | 440 | 9.39e-13 | 71.2 |
| MS.gene49312.t1 | MTR_6g077630 | 40.909 | 88 | 50 | 1 | 519 | 604 | 69 | 156 | 2.86e-12 | 65.5 |
| MS.gene49312.t1 | MTR_6g079130 | 36.905 | 84 | 49 | 1 | 148 | 231 | 18 | 97 | 3.33e-12 | 66.6 |
| MS.gene49312.t1 | MTR_6g079130 | 40.909 | 88 | 50 | 1 | 519 | 604 | 121 | 208 | 6.33e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49312.t1 | AT2G31270 | 52.830 | 212 | 82 | 3 | 410 | 606 | 352 | 560 | 6.90e-57 | 201 |
| MS.gene49312.t1 | AT2G31270 | 51.852 | 216 | 88 | 4 | 39 | 245 | 41 | 249 | 9.80e-50 | 182 |
| MS.gene49312.t1 | AT3G54710 | 50.311 | 161 | 77 | 3 | 87 | 247 | 27 | 184 | 1.92e-43 | 162 |
| MS.gene49312.t1 | AT3G54710 | 42.205 | 263 | 110 | 8 | 384 | 607 | 218 | 477 | 1.24e-40 | 154 |
Find 119 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGCAGGTATGAGAATT+TGG | 0.208186 | 1.1:+52499832 | MS.gene49312:intron |
| ATTAGATTGTTGCGATTAAA+AGG | 0.237039 | 1.1:+52499884 | MS.gene49312:CDS |
| TCAGTTAAAGTTTCAATCTT+TGG | 0.243781 | 1.1:-52499935 | None:intergenic |
| AGTGACGCTCTTAAGGATTC+AGG | 0.259783 | 1.1:-52502174 | None:intergenic |
| TGTTGCAGGTATGAGAATTT+GGG | 0.273987 | 1.1:+52499833 | MS.gene49312:intron |
| AAGCGCAACGCCGCGGTTGC+GGG | 0.283254 | 1.1:-52499497 | None:intergenic |
| GCTAAGTTGTTGTCTGAATC+TGG | 0.304619 | 1.1:+52500202 | MS.gene49312:CDS |
| GAGAGGCAACTGCCGGCTTC+TGG | 0.332877 | 1.1:-52501015 | None:intergenic |
| GAGCACGACTCAATGAGTTT+TGG | 0.341785 | 1.1:+52500251 | MS.gene49312:CDS |
| CGGCGTTGCGCTTTCGATAT+CGG | 0.348179 | 1.1:+52499507 | MS.gene49312:CDS |
| GAGGTTTACCCATGCTCATT+TGG | 0.363872 | 1.1:+52500054 | MS.gene49312:CDS |
| GCATCAAACTCAACTGCATC+AGG | 0.365765 | 1.1:-52500181 | None:intergenic |
| GAAGCACATCCTGCGCTTCA+TGG | 0.367874 | 1.1:+52501220 | MS.gene49312:CDS |
| TTCTTCAAGTGACGCTCTTA+AGG | 0.368879 | 1.1:-52502181 | None:intergenic |
| CGCAGGATGTGCTTCACTAC+TGG | 0.375185 | 1.1:-52501212 | None:intergenic |
| GAGCTGGTAGAGTTGTCATC+TGG | 0.375541 | 1.1:-52501436 | None:intergenic |
| AGATTGAAACTTTAACTGAT+AGG | 0.395153 | 1.1:+52499939 | MS.gene49312:CDS |
| CTCAAGCTTGACTCTGAAAC+AGG | 0.405661 | 1.1:-52501130 | None:intergenic |
| AAAGCGCAACGCCGCGGTTG+CGG | 0.415732 | 1.1:-52499498 | None:intergenic |
| TTTGCTTTCTGTATACTCAA+TGG | 0.428293 | 1.1:-52501296 | None:intergenic |
| AGCTGGTAGAGTTGTCATCT+GGG | 0.434221 | 1.1:-52501435 | None:intergenic |
| ACCGAATGGAGAAGATTATC+CGG | 0.434254 | 1.1:-52501577 | None:intergenic |
| CGCCTTCTCAGAAATCCATT+CGG | 0.435905 | 1.1:-52502011 | None:intergenic |
| TGAATCATGTTAAAGAGCTT+AGG | 0.436584 | 1.1:-52501777 | None:intergenic |
| AAGAATAGCAATGGAGGAAC+GGG | 0.437696 | 1.1:+52501704 | MS.gene49312:CDS |
| CCCGGATAATCTTCTCCATT+CGG | 0.449170 | 1.1:+52501576 | MS.gene49312:CDS |
| GTTAAAGAGCTTAGGGAGGC+TGG | 0.452098 | 1.1:-52501769 | None:intergenic |
| GTAGCTGACATCAGCCTGGC+TGG | 0.454247 | 1.1:-52501376 | None:intergenic |
| GCCTTCTCAGAAATCCATTC+GGG | 0.459518 | 1.1:-52502010 | None:intergenic |
| CAATGAAATGACGTCGTTGA+AGG | 0.463806 | 1.1:+52499576 | MS.gene49312:CDS |
| ACATGACTTTCTGAGTTAGC+AGG | 0.467209 | 1.1:-52500956 | None:intergenic |
| GGCTCAGGCAGCATTTCCTC+TGG | 0.468683 | 1.1:-52500818 | None:intergenic |
| TTGCGGGTTCGCATCGGTGG+TGG | 0.469410 | 1.1:-52499481 | None:intergenic |
| TGAAGGGAAAATCTGCTAGA+AGG | 0.477915 | 1.1:+52499593 | MS.gene49312:CDS |
| GAGTATACAGAAAGCAAAGA+TGG | 0.479585 | 1.1:+52501301 | MS.gene49312:CDS |
| TCATGCTTTGGACGACTGAA+TGG | 0.481298 | 1.1:-52500839 | None:intergenic |
| GGAGTAGATACAAATTTAGC+TGG | 0.483928 | 1.1:-52501355 | None:intergenic |
| GAATCATGTTAAAGAGCTTA+GGG | 0.484737 | 1.1:-52501776 | None:intergenic |
| CTGAGAAAACCGCCTTCTGA+AGG | 0.492237 | 1.1:-52501050 | None:intergenic |
| AACCAACTTGTCCGGCGAGC+TGG | 0.493098 | 1.1:-52501452 | None:intergenic |
| TGTACAAGAGGATCATGCTT+TGG | 0.499528 | 1.1:-52500851 | None:intergenic |
| TTTATACTAACATGAAGATC+CGG | 0.500484 | 1.1:-52500157 | None:intergenic |
| CCGCGGTTGCGGGTTCGCAT+CGG | 0.503017 | 1.1:-52499487 | None:intergenic |
| GTGACGCTCTTAAGGATTCA+GGG | 0.503070 | 1.1:-52502173 | None:intergenic |
| TTAAGCGCCCACCTCGTTCA+AGG | 0.503396 | 1.1:+52501473 | MS.gene49312:CDS |
| GATTGCTATTAAGAAGTTGT+TGG | 0.505832 | 1.1:+52500105 | MS.gene49312:CDS |
| TTCTTAGCTTGTGAGATAGC+TGG | 0.511965 | 1.1:-52501729 | None:intergenic |
| TAAAATATCGCCATCTGAGT+TGG | 0.516325 | 1.1:+52501177 | MS.gene49312:CDS |
| GCTTCAGCTGATGTCTCAGC+AGG | 0.517698 | 1.1:-52500986 | None:intergenic |
| CTAAGTTGTTGTCTGAATCT+GGG | 0.523632 | 1.1:+52500203 | MS.gene49312:CDS |
| GTTGCAGGTATGAGAATTTG+GGG | 0.525927 | 1.1:+52499834 | MS.gene49312:intron |
| TTCTTAATAGCAATCGCCTC+AGG | 0.526378 | 1.1:-52500097 | None:intergenic |
| AATGAAATGACGTCGTTGAA+GGG | 0.529956 | 1.1:+52499577 | MS.gene49312:CDS |
| AGGTGTAGCTAGTGTAACTC+TGG | 0.532203 | 1.1:-52501266 | None:intergenic |
| CCGTTCTGTTATCACAAAAG+AGG | 0.537384 | 1.1:+52501821 | MS.gene49312:CDS |
| TTTGGATCTGGTGTTGTGTG+AGG | 0.537780 | 1.1:-52499374 | None:intergenic |
| AAAGAATAGCAATGGAGGAA+CGG | 0.540705 | 1.1:+52501703 | MS.gene49312:CDS |
| TCCCGAATGGATTTCTGAGA+AGG | 0.541497 | 1.1:+52502009 | MS.gene49312:CDS |
| TTTGGACGACTGAATGGCTC+AGG | 0.542814 | 1.1:-52500833 | None:intergenic |
| TCAACTGTGCCAAATGAGCA+TGG | 0.543850 | 1.1:-52500063 | None:intergenic |
| GGGCGCTTAACCAACTTGTC+CGG | 0.545875 | 1.1:-52501460 | None:intergenic |
| CGAGACTAGCATATCTCCAC+TGG | 0.546554 | 1.1:-52502038 | None:intergenic |
| TACCAGCTCGCCGGACAAGT+TGG | 0.547251 | 1.1:+52501450 | MS.gene49312:CDS |
| GATGATTCATTGCTCTTCCG+AGG | 0.549354 | 1.1:-52499634 | None:intergenic |
| CGGTTGCGGGTTCGCATCGG+TGG | 0.552701 | 1.1:-52499484 | None:intergenic |
| CCGAATGGAGAAGATTATCC+GGG | 0.552846 | 1.1:-52501576 | None:intergenic |
| GGCATAAGAGAGGCAACTGC+CGG | 0.559596 | 1.1:-52501022 | None:intergenic |
| TGCCTCAATCCTTCAGAAGG+CGG | 0.563769 | 1.1:+52501041 | MS.gene49312:CDS |
| TGTTAGAATTAGTTCCCGAA+TGG | 0.564240 | 1.1:+52501996 | MS.gene49312:CDS |
| TCAATGACCTTGAACGAGGT+GGG | 0.568176 | 1.1:-52501480 | None:intergenic |
| TCTGAAGAACCATGAAGCGC+AGG | 0.570831 | 1.1:-52501229 | None:intergenic |
| AAACAGGCACAACTGAGGGT+TGG | 0.574849 | 1.1:-52501114 | None:intergenic |
| TTCAATGACCTTGAACGAGG+TGG | 0.577604 | 1.1:-52501481 | None:intergenic |
| AAATCACATTGGCTTCTCCT+CGG | 0.580298 | 1.1:+52499617 | MS.gene49312:CDS |
| TCTGAGAAGGCGGCCTCCAG+TGG | 0.580751 | 1.1:+52502022 | MS.gene49312:CDS |
| AACCGCCTTCTGAAGGATTG+AGG | 0.583856 | 1.1:-52501043 | None:intergenic |
| TCTGAAACAGGCACAACTGA+GGG | 0.587099 | 1.1:-52501118 | None:intergenic |
| GGATATTAGAAAAGTTGCTA+AGG | 0.597730 | 1.1:+52499528 | MS.gene49312:CDS |
| TTATGCCTCAATCCTTCAGA+AGG | 0.598089 | 1.1:+52501038 | MS.gene49312:CDS |
| AAAAGAAAGAATAGCAATGG+AGG | 0.601040 | 1.1:+52501698 | MS.gene49312:CDS |
| AATTTGTATCTACTCCAGCC+AGG | 0.603332 | 1.1:+52501362 | MS.gene49312:CDS |
| CTATCTCACAAGCTAAGAAG+CGG | 0.603356 | 1.1:+52501733 | MS.gene49312:CDS |
| TGCTAGAAGGCAAATCACAT+TGG | 0.603766 | 1.1:+52499606 | MS.gene49312:CDS |
| CATGACTTTCTGAGTTAGCA+GGG | 0.605336 | 1.1:-52500955 | None:intergenic |
| TGGAGTTGACATAGCATCAA+CGG | 0.606325 | 1.1:-52501335 | None:intergenic |
| TGACAACTCTACCAGCTCGC+CGG | 0.606746 | 1.1:+52501441 | MS.gene49312:CDS |
| AGTATACAGAAAGCAAAGAT+GGG | 0.606980 | 1.1:+52501302 | MS.gene49312:CDS |
| AGGTGTAGCTGACATCAGCC+TGG | 0.607269 | 1.1:-52501380 | None:intergenic |
| GGTTTCATCATGTGTACAAG+AGG | 0.610647 | 1.1:-52500863 | None:intergenic |
| CATCAAACTCAACTGCATCA+GGG | 0.610741 | 1.1:-52500180 | None:intergenic |
| ACACTATCATACCTCTGGGT+GGG | 0.612575 | 1.1:-52500278 | None:intergenic |
| CAACTGTGCCAAATGAGCAT+GGG | 0.612717 | 1.1:-52500062 | None:intergenic |
| GCGAACGAGTTGTATGAAGC+CGG | 0.612998 | 1.1:+52500138 | MS.gene49312:CDS |
| CTCTGAAACAGGCACAACTG+AGG | 0.615353 | 1.1:-52501119 | None:intergenic |
| TTCACTGCAGAGAATGATGA+GGG | 0.616272 | 1.1:-52500887 | None:intergenic |
| CCGATGCGAACCCGCAACCG+CGG | 0.620178 | 1.1:+52499487 | MS.gene49312:CDS |
| CGAATGGATTTCTGAGAAGG+CGG | 0.621345 | 1.1:+52502012 | MS.gene49312:CDS |
| GATTCTGTAACCAACTCAGA+TGG | 0.624141 | 1.1:-52501187 | None:intergenic |
| TACTTCTATCAACAATATCA+CGG | 0.628510 | 1.1:-52501872 | None:intergenic |
| TTTCACTGCAGAGAATGATG+AGG | 0.630337 | 1.1:-52500888 | None:intergenic |
| CACACTATCATACCTCTGGG+TGG | 0.639190 | 1.1:-52500279 | None:intergenic |
| GTAGCTAGTGTAACTCTGGA+TGG | 0.641322 | 1.1:-52501262 | None:intergenic |
| TGGATTGAAACAGATTGAAG+TGG | 0.649528 | 1.1:-52501094 | None:intergenic |
| CTGTTTCAGAGTCAAGCTTG+AGG | 0.653446 | 1.1:+52501131 | MS.gene49312:CDS |
| AATTTCAATGACCTTGAACG+AGG | 0.653533 | 1.1:-52501484 | None:intergenic |
| TTGCAGGTATGAGAATTTGG+GGG | 0.655048 | 1.1:+52499835 | MS.gene49312:intron |
| GACTAGCATATCTCCACTGG+AGG | 0.665848 | 1.1:-52502035 | None:intergenic |
| ACGTGCTTCTAGTGACATTG+CGG | 0.666388 | 1.1:+52500922 | MS.gene49312:CDS |
| GCTGGTAGAGTTGTCATCTG+GGG | 0.673094 | 1.1:-52501434 | None:intergenic |
| ACTGCAGAGAATGATGAGGG+AGG | 0.673341 | 1.1:-52500884 | None:intergenic |
| GAGGATAAATTCCACCTCTG+AGG | 0.675454 | 1.1:+52501150 | MS.gene49312:CDS |
| AATCTGGGACTATGTCTCTG+AGG | 0.683217 | 1.1:+52500218 | MS.gene49312:CDS |
| ATAGGGTGATGAAGTTCCAG+AGG | 0.688686 | 1.1:+52500802 | MS.gene49312:intron |
| GTGTTGTGTGAGGATTGTGA+AGG | 0.688886 | 1.1:-52499364 | None:intergenic |
| ATATCGAAAGCGCAACGCCG+CGG | 0.697463 | 1.1:-52499504 | None:intergenic |
| GAAGGATTGAGGCATAAGAG+AGG | 0.703019 | 1.1:-52501032 | None:intergenic |
| AATGGAGAAGATTATCCGGG+AGG | 0.714359 | 1.1:-52501573 | None:intergenic |
| TCATGTTAAAGAGCTTAGGG+AGG | 0.717982 | 1.1:-52501773 | None:intergenic |
| TTCTATCAACAATATCACGG+TGG | 0.721589 | 1.1:-52501869 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCAAAAATTTGTATTT+AGG | + | chr1.1:52499994-52500013 | MS.gene49312:intron | 10.0% |
| !!! | TTTTTGTTGATTTATTTTAT+GGG | + | chr1.1:52499802-52499821 | MS.gene49312:intron | 10.0% |
| !!! | TTTTTTGTTGATTTATTTTA+TGG | + | chr1.1:52499801-52499820 | MS.gene49312:intron | 10.0% |
| !! | AATAATATGCAATTTCTAAA+AGG | - | chr1.1:52500759-52500778 | None:intergenic | 15.0% |
| !! | TCACTCATAAAAATAAATAA+AGG | - | chr1.1:52501642-52501661 | None:intergenic | 15.0% |
| !! | AATATAATCAATACAATGAC+AGG | - | chr1.1:52502117-52502136 | None:intergenic | 20.0% |
| !! | ATATAATCAATACAATGACA+GGG | - | chr1.1:52502116-52502135 | None:intergenic | 20.0% |
| !! | TGAAAGTAACTTAAATTCTA+AGG | + | chr1.1:52500663-52500682 | MS.gene49312:intron | 20.0% |
| !!! | AAAAGATGCTTTTATGTATA+GGG | + | chr1.1:52500785-52500804 | MS.gene49312:intron | 20.0% |
| !!! | ATTTTGAATTTTCAGATCTA+GGG | + | chr1.1:52499678-52499697 | MS.gene49312:intron | 20.0% |
| !!! | TAAAAGATGCTTTTATGTAT+AGG | + | chr1.1:52500784-52500803 | MS.gene49312:intron | 20.0% |
| !!! | TAGTTTTGCATTATATTTGT+GGG | + | chr1.1:52500408-52500427 | MS.gene49312:intron | 20.0% |
| !!! | TCTTAAGCATTTTGAAATTT+TGG | + | chr1.1:52499754-52499773 | MS.gene49312:intron | 20.0% |
| !!! | TTTTTATGATTTGTTTGATG+TGG | + | chr1.1:52499721-52499740 | MS.gene49312:intron | 20.0% |
| ! | AAACCAATCAACATAATAAG+TGG | - | chr1.1:52500452-52500471 | None:intergenic | 25.0% |
| ! | AGATTGAAACTTTAACTGAT+AGG | + | chr1.1:52499939-52499958 | MS.gene49312:CDS | 25.0% |
| ! | ATGAAAAATGAAAATGATGC+TGG | + | chr1.1:52501517-52501536 | MS.gene49312:CDS | 25.0% |
| ! | ATTAGATTGTTGCGATTAAA+AGG | + | chr1.1:52499884-52499903 | MS.gene49312:CDS | 25.0% |
| ! | TAATGCTAATTCTGAGTAAA+AGG | + | chr1.1:52500603-52500622 | MS.gene49312:intron | 25.0% |
| ! | TACTTCTATCAACAATATCA+CGG | - | chr1.1:52501875-52501894 | None:intergenic | 25.0% |
| ! | TATCCACTTATTATGTTGAT+TGG | + | chr1.1:52500446-52500465 | MS.gene49312:intron | 25.0% |
| ! | TCAGTTAAAGTTTCAATCTT+TGG | - | chr1.1:52499938-52499957 | None:intergenic | 25.0% |
| ! | TGGAATTGTAAATTCATAAC+AGG | - | chr1.1:52502089-52502108 | None:intergenic | 25.0% |
| ! | TTTATACTAACATGAAGATC+CGG | - | chr1.1:52500160-52500179 | None:intergenic | 25.0% |
| ! | TTTCTATGAAACATAATCGA+CGG | + | chr1.1:52501902-52501921 | MS.gene49312:intron | 25.0% |
| !! | AAATTTTGGATGTAGGTTTT+TGG | + | chr1.1:52499768-52499787 | MS.gene49312:intron | 25.0% |
| !! | ACTTATTATGTTGATTGGTT+TGG | + | chr1.1:52500451-52500470 | MS.gene49312:intron | 25.0% |
| !! | CATTTTGAATTTTCAGATCT+AGG | + | chr1.1:52499677-52499696 | MS.gene49312:intron | 25.0% |
| !! | TTGATATTTCATTTTGCTTG+TGG | + | chr1.1:52500358-52500377 | MS.gene49312:intron | 25.0% |
| !!! | ATTCAAAATGCTTACTTTTC+AGG | - | chr1.1:52499667-52499686 | None:intergenic | 25.0% |
| !!! | CATTTTGAAATTTTGGATGT+AGG | + | chr1.1:52499761-52499780 | MS.gene49312:intron | 25.0% |
| !!! | CTAGTTTTGCATTATATTTG+TGG | + | chr1.1:52500407-52500426 | MS.gene49312:intron | 25.0% |
| !!! | GCATCATTTTCATTTTTCAT+AGG | - | chr1.1:52501517-52501536 | None:intergenic | 25.0% |
| !!! | TAGGATTTTTTTTCTGATTG+TGG | + | chr1.1:52500013-52500032 | MS.gene49312:intron | 25.0% |
| !!! | TTTTTTTCTGATTGTGGTTT+TGG | + | chr1.1:52500019-52500038 | MS.gene49312:intron | 25.0% |
| AAAAATGAAAATGATGCTGG+CGG | + | chr1.1:52501520-52501539 | MS.gene49312:CDS | 30.0% | |
| AAAAGAAAGAATAGCAATGG+AGG | + | chr1.1:52501698-52501717 | MS.gene49312:CDS | 30.0% | |
| AACTTCACCTAAGAAAACAA+GGG | - | chr1.1:52501957-52501976 | None:intergenic | 30.0% | |
| AGTATACAGAAAGCAAAGAT+GGG | + | chr1.1:52501302-52501321 | MS.gene49312:CDS | 30.0% | |
| GAATCATGTTAAAGAGCTTA+GGG | - | chr1.1:52501779-52501798 | None:intergenic | 30.0% | |
| GGAAAAAGAAAGAATAGCAA+TGG | + | chr1.1:52501695-52501714 | MS.gene49312:CDS | 30.0% | |
| GGATATTAGAAAAGTTGCTA+AGG | + | chr1.1:52499528-52499547 | MS.gene49312:CDS | 30.0% | |
| TGAATCATGTTAAAGAGCTT+AGG | - | chr1.1:52501780-52501799 | None:intergenic | 30.0% | |
| TTCTATGAAACATAATCGAC+GGG | + | chr1.1:52501903-52501922 | MS.gene49312:intron | 30.0% | |
| TTTGCTTTCTGTATACTCAA+TGG | - | chr1.1:52501299-52501318 | None:intergenic | 30.0% | |
| ! | GATTGCTATTAAGAAGTTGT+TGG | + | chr1.1:52500105-52500124 | MS.gene49312:CDS | 30.0% |
| ! | GTCATAAAACTTCTTTTAGG+TGG | - | chr1.1:52501415-52501434 | None:intergenic | 30.0% |
| ! | TTGTCACTATGAGATTTTGA+TGG | + | chr1.1:52500538-52500557 | MS.gene49312:intron | 30.0% |
| !! | ATTTTCAGATCTAGGGTTTT+TGG | + | chr1.1:52499685-52499704 | MS.gene49312:intron | 30.0% |
| !!! | GTTGAAGTTTATTTTACCTG+AGG | + | chr1.1:52500081-52500100 | MS.gene49312:CDS | 30.0% |
| !!! | GTTTTTGAGGTTAGTTCAAT+TGG | - | chr1.1:52499439-52499458 | None:intergenic | 30.0% |
| !!! | TATGGGTTTTTTTTTGTTGC+AGG | + | chr1.1:52499819-52499838 | MS.gene49312:intron | 30.0% |
| AAAAACCCCAGAAAAATCAC+TGG | + | chr1.1:52499453-52499472 | MS.gene49312:CDS | 35.0% | |
| AAAGAATAGCAATGGAGGAA+CGG | + | chr1.1:52501703-52501722 | MS.gene49312:CDS | 35.0% | |
| AATGAAATGACGTCGTTGAA+GGG | + | chr1.1:52499577-52499596 | MS.gene49312:CDS | 35.0% | |
| AATTTCAATGACCTTGAACG+AGG | - | chr1.1:52501487-52501506 | None:intergenic | 35.0% | |
| ACTTCACCTAAGAAAACAAG+GGG | - | chr1.1:52501956-52501975 | None:intergenic | 35.0% | |
| CAACTTCACCTAAGAAAACA+AGG | - | chr1.1:52501958-52501977 | None:intergenic | 35.0% | |
| CTAAGTTGTTGTCTGAATCT+GGG | + | chr1.1:52500203-52500222 | MS.gene49312:CDS | 35.0% | |
| GAGTATACAGAAAGCAAAGA+TGG | + | chr1.1:52501301-52501320 | MS.gene49312:CDS | 35.0% | |
| GGAGTAGATACAAATTTAGC+TGG | - | chr1.1:52501358-52501377 | None:intergenic | 35.0% | |
| GTTTGGTAGAAAGAATAGTC+AGG | + | chr1.1:52500468-52500487 | MS.gene49312:intron | 35.0% | |
| TAAAATATCGCCATCTGAGT+TGG | + | chr1.1:52501177-52501196 | MS.gene49312:CDS | 35.0% | |
| TCTCGTAAGTGTCTTTCTTT+AGG | + | chr1.1:52502056-52502075 | MS.gene49312:intron | 35.0% | |
| TGGATTGAAACAGATTGAAG+TGG | - | chr1.1:52501097-52501116 | None:intergenic | 35.0% | |
| TGTTAGAATTAGTTCCCGAA+TGG | + | chr1.1:52501996-52502015 | MS.gene49312:CDS | 35.0% | |
| TGTTGCAGGTATGAGAATTT+GGG | + | chr1.1:52499833-52499852 | MS.gene49312:intron | 35.0% | |
| TTCTATCAACAATATCACGG+TGG | - | chr1.1:52501872-52501891 | None:intergenic | 35.0% | |
| TTGTTGCAGGTATGAGAATT+TGG | + | chr1.1:52499832-52499851 | MS.gene49312:intron | 35.0% | |
| ! | AACTCAGATGGCGATATTTT+AGG | - | chr1.1:52501178-52501197 | None:intergenic | 35.0% |
| ! | ACTCAGATGGCGATATTTTA+GGG | - | chr1.1:52501177-52501196 | None:intergenic | 35.0% |
| ! | AGATTTTGAGCTACGAAGAT+TGG | - | chr1.1:52499404-52499423 | None:intergenic | 35.0% |
| ! | CCTCTTTTGTGATAACAGAA+CGG | - | chr1.1:52501824-52501843 | None:intergenic | 35.0% |
| ! | GATTTTGAGCTACGAAGATT+GGG | - | chr1.1:52499403-52499422 | None:intergenic | 35.0% |
| ! | GCGGTTTTCTCAGAAATTAA+AGG | + | chr1.1:52501060-52501079 | MS.gene49312:CDS | 35.0% |
| ! | GGGGTCATAAAACTTCTTTT+AGG | - | chr1.1:52501418-52501437 | None:intergenic | 35.0% |
| ! | TGACATTTTTGATATCCTCC+CGG | + | chr1.1:52501558-52501577 | MS.gene49312:CDS | 35.0% |
| !! | GTATACTCAATGGTTTTGCT+AGG | - | chr1.1:52501289-52501308 | None:intergenic | 35.0% |
| !! | GTTTTGGATGAGTTTTTAGG+AGG | + | chr1.1:52500035-52500054 | MS.gene49312:intron | 35.0% |
| !!! | AAGATTGGGTTTTTTGGATC+TGG | - | chr1.1:52499389-52499408 | None:intergenic | 35.0% |
| !!! | ACTAAACCCCTTGTTTTCTT+AGG | + | chr1.1:52501947-52501966 | MS.gene49312:intron | 35.0% |
| !!! | GTGGTTTTGGATGAGTTTTT+AGG | + | chr1.1:52500032-52500051 | MS.gene49312:intron | 35.0% |
| !!! | TAGCTTTTGATGATGAGTTG+AGG | + | chr1.1:52500710-52500729 | MS.gene49312:intron | 35.0% |
| !!! | TGATTTTTCTGGGGTTTTTG+AGG | - | chr1.1:52499452-52499471 | None:intergenic | 35.0% |
| AAAGAATAGTCAGGTGTGGT+GGG | + | chr1.1:52500477-52500496 | MS.gene49312:intron | 40.0% | |
| AAGAATAGCAATGGAGGAAC+GGG | + | chr1.1:52501704-52501723 | MS.gene49312:CDS | 40.0% | |
| AATTTGTATCTACTCCAGCC+AGG | + | chr1.1:52501362-52501381 | MS.gene49312:CDS | 40.0% | |
| ACATGACTTTCTGAGTTAGC+AGG | - | chr1.1:52500959-52500978 | None:intergenic | 40.0% | |
| ACCGAATGGAGAAGATTATC+CGG | - | chr1.1:52501580-52501599 | None:intergenic | 40.0% | |
| ATGCACACTATCATACCTCT+GGG | - | chr1.1:52500285-52500304 | None:intergenic | 40.0% | |
| CAATACAATGACAGGGTTGT+TGG | - | chr1.1:52502109-52502128 | None:intergenic | 40.0% | |
| CAATGAAATGACGTCGTTGA+AGG | + | chr1.1:52499576-52499595 | MS.gene49312:CDS | 40.0% | |
| CATCAAACTCAACTGCATCA+GGG | - | chr1.1:52500183-52500202 | None:intergenic | 40.0% | |
| CATGACTTTCTGAGTTAGCA+GGG | - | chr1.1:52500958-52500977 | None:intergenic | 40.0% | |
| CCGTTCTGTTATCACAAAAG+AGG | + | chr1.1:52501821-52501840 | MS.gene49312:CDS | 40.0% | |
| CTATCTCACAAGCTAAGAAG+CGG | + | chr1.1:52501733-52501752 | MS.gene49312:CDS | 40.0% | |
| GATTCTGTAACCAACTCAGA+TGG | - | chr1.1:52501190-52501209 | None:intergenic | 40.0% | |
| GCTAAGTTGTTGTCTGAATC+TGG | + | chr1.1:52500202-52500221 | MS.gene49312:CDS | 40.0% | |
| GGTTTCATCATGTGTACAAG+AGG | - | chr1.1:52500866-52500885 | None:intergenic | 40.0% | |
| GTAGAAAGAATAGTCAGGTG+TGG | + | chr1.1:52500473-52500492 | MS.gene49312:intron | 40.0% | |
| GTTGCAGGTATGAGAATTTG+GGG | + | chr1.1:52499834-52499853 | MS.gene49312:intron | 40.0% | |
| TCATGTTAAAGAGCTTAGGG+AGG | - | chr1.1:52501776-52501795 | None:intergenic | 40.0% | |
| TGAAGGGAAAATCTGCTAGA+AGG | + | chr1.1:52499593-52499612 | MS.gene49312:CDS | 40.0% | |
| TGCTAGAAGGCAAATCACAT+TGG | + | chr1.1:52499606-52499625 | MS.gene49312:CDS | 40.0% | |
| TGGAGTTGACATAGCATCAA+CGG | - | chr1.1:52501338-52501357 | None:intergenic | 40.0% | |
| TGTACAAGAGGATCATGCTT+TGG | - | chr1.1:52500854-52500873 | None:intergenic | 40.0% | |
| TTATGCCTCAATCCTTCAGA+AGG | + | chr1.1:52501038-52501057 | MS.gene49312:CDS | 40.0% | |
| TTCACTGCAGAGAATGATGA+GGG | - | chr1.1:52500890-52500909 | None:intergenic | 40.0% | |
| TTCTTAATAGCAATCGCCTC+AGG | - | chr1.1:52500100-52500119 | None:intergenic | 40.0% | |
| TTCTTCAAGTGACGCTCTTA+AGG | - | chr1.1:52502184-52502203 | None:intergenic | 40.0% | |
| TTGCAGGTATGAGAATTTGG+GGG | + | chr1.1:52499835-52499854 | MS.gene49312:intron | 40.0% | |
| TTTCACTGCAGAGAATGATG+AGG | - | chr1.1:52500891-52500910 | None:intergenic | 40.0% | |
| ! | AAACGAAAGAGCATACCGAA+TGG | - | chr1.1:52501594-52501613 | None:intergenic | 40.0% |
| ! | CTTCTCCAGTGATTTTTCTG+GGG | - | chr1.1:52499461-52499480 | None:intergenic | 40.0% |
| ! | CTTTTTCCTGAATCTGCAGA+AGG | - | chr1.1:52501683-52501702 | None:intergenic | 40.0% |
| ! | GCTTCTCCAGTGATTTTTCT+GGG | - | chr1.1:52499462-52499481 | None:intergenic | 40.0% |
| ! | TGAAGCTTTTAACCAGAAGC+CGG | + | chr1.1:52501003-52501022 | MS.gene49312:CDS | 40.0% |
| !! | AAATCACATTGGCTTCTCCT+CGG | + | chr1.1:52499617-52499636 | MS.gene49312:CDS | 40.0% |
| !! | CATAGCATCAACGGTTTTGA+AGG | - | chr1.1:52501329-52501348 | None:intergenic | 40.0% |
| !! | TTCTTAGCTTGTGAGATAGC+TGG | - | chr1.1:52501732-52501751 | None:intergenic | 40.0% |
| !!! | GCTACGAAGATTGGGTTTTT+TGG | - | chr1.1:52499395-52499414 | None:intergenic | 40.0% |
| AATGGAGAAGATTATCCGGG+AGG | - | chr1.1:52501576-52501595 | None:intergenic | 45.0% | |
| ACACTATCATACCTCTGGGT+GGG | - | chr1.1:52500281-52500300 | None:intergenic | 45.0% | |
| ACCATTCCTTCTGCAGATTC+AGG | + | chr1.1:52501674-52501693 | MS.gene49312:intron | 45.0% | |
| ACGTGCTTCTAGTGACATTG+CGG | + | chr1.1:52500922-52500941 | MS.gene49312:CDS | 45.0% | |
| AGCTGGTAGAGTTGTCATCT+GGG | - | chr1.1:52501438-52501457 | None:intergenic | 45.0% | |
| AGGTGTAGCTAGTGTAACTC+TGG | - | chr1.1:52501269-52501288 | None:intergenic | 45.0% | |
| AGTGACGCTCTTAAGGATTC+AGG | - | chr1.1:52502177-52502196 | None:intergenic | 45.0% | |
| ATAGGGTGATGAAGTTCCAG+AGG | + | chr1.1:52500802-52500821 | MS.gene49312:intron | 45.0% | |
| CAACTGTGCCAAATGAGCAT+GGG | - | chr1.1:52500065-52500084 | None:intergenic | 45.0% | |
| CATGCACACTATCATACCTC+TGG | - | chr1.1:52500286-52500305 | None:intergenic | 45.0% | |
| CCCGGATAATCTTCTCCATT+CGG | + | chr1.1:52501576-52501595 | MS.gene49312:CDS | 45.0% | |
| CCGAATGGAGAAGATTATCC+GGG | - | chr1.1:52501579-52501598 | None:intergenic | 45.0% | |
| CGCCTTCTCAGAAATCCATT+CGG | - | chr1.1:52502014-52502033 | None:intergenic | 45.0% | |
| CTGTTTCAGAGTCAAGCTTG+AGG | + | chr1.1:52501131-52501150 | MS.gene49312:CDS | 45.0% | |
| GAAAGAATAGTCAGGTGTGG+TGG | + | chr1.1:52500476-52500495 | MS.gene49312:intron | 45.0% | |
| GAAGGATTGAGGCATAAGAG+AGG | - | chr1.1:52501035-52501054 | None:intergenic | 45.0% | |
| GAGGATAAATTCCACCTCTG+AGG | + | chr1.1:52501150-52501169 | MS.gene49312:CDS | 45.0% | |
| GAGGTTTACCCATGCTCATT+TGG | + | chr1.1:52500054-52500073 | MS.gene49312:CDS | 45.0% | |
| GAGTAAAAGGCCAAGTCTGT+GGG | + | chr1.1:52500616-52500635 | MS.gene49312:intron | 45.0% | |
| GATGATTCATTGCTCTTCCG+AGG | - | chr1.1:52499637-52499656 | None:intergenic | 45.0% | |
| GCATCAAACTCAACTGCATC+AGG | - | chr1.1:52500184-52500203 | None:intergenic | 45.0% | |
| GCCTTCTCAGAAATCCATTC+GGG | - | chr1.1:52502013-52502032 | None:intergenic | 45.0% | |
| GTAGCTAGTGTAACTCTGGA+TGG | - | chr1.1:52501265-52501284 | None:intergenic | 45.0% | |
| GTGACGCTCTTAAGGATTCA+GGG | - | chr1.1:52502176-52502195 | None:intergenic | 45.0% | |
| GTGTTGTGTGAGGATTGTGA+AGG | - | chr1.1:52499367-52499386 | None:intergenic | 45.0% | |
| TCAACTGTGCCAAATGAGCA+TGG | - | chr1.1:52500066-52500085 | None:intergenic | 45.0% | |
| TCAATGACCTTGAACGAGGT+GGG | - | chr1.1:52501483-52501502 | None:intergenic | 45.0% | |
| TCCTGAATCTGCAGAAGGAA+TGG | - | chr1.1:52501678-52501697 | None:intergenic | 45.0% | |
| TGAGTAAAAGGCCAAGTCTG+TGG | + | chr1.1:52500615-52500634 | MS.gene49312:intron | 45.0% | |
| TTCAATGACCTTGAACGAGG+TGG | - | chr1.1:52501484-52501503 | None:intergenic | 45.0% | |
| ! | AACAAAGTGTCCCACAGACT+TGG | - | chr1.1:52500629-52500648 | None:intergenic | 45.0% |
| ! | AATCTGGGACTATGTCTCTG+AGG | + | chr1.1:52500218-52500237 | MS.gene49312:CDS | 45.0% |
| ! | CGAATGGATTTCTGAGAAGG+CGG | + | chr1.1:52502012-52502031 | MS.gene49312:CDS | 45.0% |
| ! | GAGCACGACTCAATGAGTTT+TGG | + | chr1.1:52500251-52500270 | MS.gene49312:CDS | 45.0% |
| ! | GGCTTCTCCAGTGATTTTTC+TGG | - | chr1.1:52499463-52499482 | None:intergenic | 45.0% |
| ! | TCATGCTTTGGACGACTGAA+TGG | - | chr1.1:52500842-52500861 | None:intergenic | 45.0% |
| ! | TCCCGAATGGATTTCTGAGA+AGG | + | chr1.1:52502009-52502028 | MS.gene49312:CDS | 45.0% |
| ! | TCTGAAACAGGCACAACTGA+GGG | - | chr1.1:52501121-52501140 | None:intergenic | 45.0% |
| !! | CGATATTTTAGGGACCTCAG+AGG | - | chr1.1:52501167-52501186 | None:intergenic | 45.0% |
| !! | CTCAAGCTTGACTCTGAAAC+AGG | - | chr1.1:52501133-52501152 | None:intergenic | 45.0% |
| !! | CTTTTAGGTGGCTTCAATGC+AGG | - | chr1.1:52501403-52501422 | None:intergenic | 45.0% |
| !! | TATTTTAGGGACCTCAGAGG+TGG | - | chr1.1:52501164-52501183 | None:intergenic | 45.0% |
| !! | TTTGGATCTGGTGTTGTGTG+AGG | - | chr1.1:52499377-52499396 | None:intergenic | 45.0% |
| !!! | GGGGGAGTTTTTTGATAGCT+TGG | + | chr1.1:52499853-52499872 | MS.gene49312:CDS | 45.0% |
| AAACAGGCACAACTGAGGGT+TGG | - | chr1.1:52501117-52501136 | None:intergenic | 50.0% | |
| ACTGCAGAGAATGATGAGGG+AGG | - | chr1.1:52500887-52500906 | None:intergenic | 50.0% | |
| CACACTATCATACCTCTGGG+TGG | - | chr1.1:52500282-52500301 | None:intergenic | 50.0% | |
| CGAGACTAGCATATCTCCAC+TGG | - | chr1.1:52502041-52502060 | None:intergenic | 50.0% | |
| CTGAGAAAACCGCCTTCTGA+AGG | - | chr1.1:52501053-52501072 | None:intergenic | 50.0% | |
| GACTAGCATATCTCCACTGG+AGG | - | chr1.1:52502038-52502057 | None:intergenic | 50.0% | |
| GAGCTGGTAGAGTTGTCATC+TGG | - | chr1.1:52501439-52501458 | None:intergenic | 50.0% | |
| GCGAACGAGTTGTATGAAGC+CGG | + | chr1.1:52500138-52500157 | MS.gene49312:CDS | 50.0% | |
| GCTGGTAGAGTTGTCATCTG+GGG | - | chr1.1:52501437-52501456 | None:intergenic | 50.0% | |
| GTTAAAGAGCTTAGGGAGGC+TGG | - | chr1.1:52501772-52501791 | None:intergenic | 50.0% | |
| TCTGAAGAACCATGAAGCGC+AGG | - | chr1.1:52501232-52501251 | None:intergenic | 50.0% | |
| TGCCTCAATCCTTCAGAAGG+CGG | + | chr1.1:52501041-52501060 | MS.gene49312:CDS | 50.0% | |
| TTTGGACGACTGAATGGCTC+AGG | - | chr1.1:52500836-52500855 | None:intergenic | 50.0% | |
| ! | AACCGCCTTCTGAAGGATTG+AGG | - | chr1.1:52501046-52501065 | None:intergenic | 50.0% |
| !! | CTCTGAAACAGGCACAACTG+AGG | - | chr1.1:52501122-52501141 | None:intergenic | 50.0% |
| !!! | GTTTTGGAAATCCCACCCAG+AGG | + | chr1.1:52500267-52500286 | MS.gene49312:CDS | 50.0% |
| AGGTGTAGCTGACATCAGCC+TGG | - | chr1.1:52501383-52501402 | None:intergenic | 55.0% | |
| CGCAGGATGTGCTTCACTAC+TGG | - | chr1.1:52501215-52501234 | None:intergenic | 55.0% | |
| CGGCGTTGCGCTTTCGATAT+CGG | + | chr1.1:52499507-52499526 | MS.gene49312:CDS | 55.0% | |
| GAAGCACATCCTGCGCTTCA+TGG | + | chr1.1:52501220-52501239 | MS.gene49312:CDS | 55.0% | |
| GCTTCAGCTGATGTCTCAGC+AGG | - | chr1.1:52500989-52501008 | None:intergenic | 55.0% | |
| GGCATAAGAGAGGCAACTGC+CGG | - | chr1.1:52501025-52501044 | None:intergenic | 55.0% | |
| GGGCGCTTAACCAACTTGTC+CGG | - | chr1.1:52501463-52501482 | None:intergenic | 55.0% | |
| TGACAACTCTACCAGCTCGC+CGG | + | chr1.1:52501441-52501460 | MS.gene49312:CDS | 55.0% | |
| TTAAGCGCCCACCTCGTTCA+AGG | + | chr1.1:52501473-52501492 | MS.gene49312:CDS | 55.0% | |
| ! | ATATCGAAAGCGCAACGCCG+CGG | - | chr1.1:52499507-52499526 | None:intergenic | 55.0% |
| AACCAACTTGTCCGGCGAGC+TGG | - | chr1.1:52501455-52501474 | None:intergenic | 60.0% | |
| GGCTCAGGCAGCATTTCCTC+TGG | - | chr1.1:52500821-52500840 | None:intergenic | 60.0% | |
| GTAGCTGACATCAGCCTGGC+TGG | - | chr1.1:52501379-52501398 | None:intergenic | 60.0% | |
| TACCAGCTCGCCGGACAAGT+TGG | + | chr1.1:52501450-52501469 | MS.gene49312:CDS | 60.0% | |
| AAAGCGCAACGCCGCGGTTG+CGG | - | chr1.1:52499501-52499520 | None:intergenic | 65.0% | |
| TCTGAGAAGGCGGCCTCCAG+TGG | + | chr1.1:52502022-52502041 | MS.gene49312:CDS | 65.0% | |
| ! | TTGCGGGTTCGCATCGGTGG+TGG | - | chr1.1:52499484-52499503 | None:intergenic | 65.0% |
| !! | GAGAGGCAACTGCCGGCTTC+TGG | - | chr1.1:52501018-52501037 | None:intergenic | 65.0% |
| AAGCGCAACGCCGCGGTTGC+GGG | - | chr1.1:52499500-52499519 | None:intergenic | 70.0% | |
| CCGATGCGAACCCGCAACCG+CGG | + | chr1.1:52499487-52499506 | MS.gene49312:CDS | 70.0% | |
| CCGCGGTTGCGGGTTCGCAT+CGG | - | chr1.1:52499490-52499509 | None:intergenic | 70.0% | |
| CGGTTGCGGGTTCGCATCGG+TGG | - | chr1.1:52499487-52499506 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 52499343 | 52502212 | 52499343 | ID=MS.gene49312 |
| chr1.1 | mRNA | 52499343 | 52502212 | 52499343 | ID=MS.gene49312.t1;Parent=MS.gene49312 |
| chr1.1 | exon | 52499343 | 52499671 | 52499343 | ID=MS.gene49312.t1.exon1;Parent=MS.gene49312.t1 |
| chr1.1 | CDS | 52499343 | 52499671 | 52499343 | ID=cds.MS.gene49312.t1;Parent=MS.gene49312.t1 |
| chr1.1 | exon | 52499841 | 52499960 | 52499841 | ID=MS.gene49312.t1.exon2;Parent=MS.gene49312.t1 |
| chr1.1 | CDS | 52499841 | 52499960 | 52499841 | ID=cds.MS.gene49312.t1;Parent=MS.gene49312.t1 |
| chr1.1 | exon | 52500054 | 52500288 | 52500054 | ID=MS.gene49312.t1.exon3;Parent=MS.gene49312.t1 |
| chr1.1 | CDS | 52500054 | 52500288 | 52500054 | ID=cds.MS.gene49312.t1;Parent=MS.gene49312.t1 |
| chr1.1 | exon | 52500806 | 52501597 | 52500806 | ID=MS.gene49312.t1.exon4;Parent=MS.gene49312.t1 |
| chr1.1 | CDS | 52500806 | 52501597 | 52500806 | ID=cds.MS.gene49312.t1;Parent=MS.gene49312.t1 |
| chr1.1 | exon | 52501690 | 52501891 | 52501690 | ID=MS.gene49312.t1.exon5;Parent=MS.gene49312.t1 |
| chr1.1 | CDS | 52501690 | 52501891 | 52501690 | ID=cds.MS.gene49312.t1;Parent=MS.gene49312.t1 |
| chr1.1 | exon | 52501969 | 52502059 | 52501969 | ID=MS.gene49312.t1.exon6;Parent=MS.gene49312.t1 |
| chr1.1 | CDS | 52501969 | 52502059 | 52501969 | ID=cds.MS.gene49312.t1;Parent=MS.gene49312.t1 |
| chr1.1 | exon | 52502155 | 52502212 | 52502155 | ID=MS.gene49312.t1.exon7;Parent=MS.gene49312.t1 |
| chr1.1 | CDS | 52502155 | 52502212 | 52502155 | ID=cds.MS.gene49312.t1;Parent=MS.gene49312.t1 |
| Gene Sequence |
| Protein sequence |
