Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057358.t1 | XP_003600808.1 | 98.5 | 331 | 5 | 0 | 1 | 331 | 101 | 431 | 2.60E-187 | 664.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057358.t1 | Q9LZN0 | 74.5 | 333 | 78 | 2 | 1 | 331 | 71 | 398 | 1.5e-143 | 510.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057358.t1 | A0A072V9B0 | 98.5 | 331 | 5 | 0 | 1 | 331 | 101 | 431 | 1.9e-187 | 664.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene057358 | 0.819857 | 9.32E-53 | -1.69E-46 |
| MS.gene052367 | MS.gene057358 | 0.802688 | 4.98E-49 | -1.69E-46 |
| MS.gene053348 | MS.gene057358 | 0.809201 | 2.13E-50 | -1.69E-46 |
| MS.gene054552 | MS.gene057358 | 0.805265 | 1.45E-49 | -1.69E-46 |
| MS.gene055308 | MS.gene057358 | 0.803224 | 3.86E-49 | -1.69E-46 |
| MS.gene055578 | MS.gene057358 | 0.808176 | 3.52E-50 | -1.69E-46 |
| MS.gene056041 | MS.gene057358 | 0.853563 | 2.20E-61 | -1.69E-46 |
| MS.gene056526 | MS.gene057358 | 0.812823 | 3.49E-51 | -1.69E-46 |
| MS.gene057357 | MS.gene057358 | 0.901012 | 4.12E-78 | -1.69E-46 |
| MS.gene057358 | MS.gene057359 | 0.990927 | 5.09E-185 | -1.69E-46 |
| MS.gene057358 | MS.gene060473 | 0.826055 | 3.35E-54 | -1.69E-46 |
| MS.gene057358 | MS.gene060565 | 0.8138 | 2.13E-51 | -1.69E-46 |
| MS.gene057358 | MS.gene061099 | 0.825697 | 4.07E-54 | -1.69E-46 |
| MS.gene057358 | MS.gene061260 | 0.830263 | 3.24E-55 | -1.69E-46 |
| MS.gene057358 | MS.gene061275 | 0.830908 | 2.25E-55 | -1.69E-46 |
| MS.gene057358 | MS.gene067143 | 0.802052 | 6.74E-49 | -1.69E-46 |
| MS.gene057358 | MS.gene067144 | 0.815049 | 1.13E-51 | -1.69E-46 |
| MS.gene057358 | MS.gene068547 | 0.802956 | 4.39E-49 | -1.69E-46 |
| MS.gene057358 | MS.gene070800 | 0.802166 | 6.38E-49 | -1.69E-46 |
| MS.gene057358 | MS.gene072954 | 0.809345 | 1.98E-50 | -1.69E-46 |
| MS.gene057358 | MS.gene072956 | 0.804452 | 2.15E-49 | -1.69E-46 |
| MS.gene057358 | MS.gene072963 | 0.818579 | 1.82E-52 | -1.69E-46 |
| MS.gene057358 | MS.gene07425 | 0.80013 | 1.66E-48 | -1.69E-46 |
| MS.gene057358 | MS.gene08836 | 0.812106 | 5.01E-51 | -1.69E-46 |
| MS.gene057358 | MS.gene08988 | 0.823569 | 1.29E-53 | -1.69E-46 |
| MS.gene057358 | MS.gene09002 | 0.815136 | 1.08E-51 | -1.69E-46 |
| MS.gene057358 | MS.gene09258 | 0.808865 | 2.51E-50 | -1.69E-46 |
| MS.gene057358 | MS.gene09540 | 0.815391 | 9.47E-52 | -1.69E-46 |
| MS.gene057358 | MS.gene09543 | 0.812296 | 4.55E-51 | -1.69E-46 |
| MS.gene057358 | MS.gene09806 | 0.83457 | 2.78E-56 | -1.69E-46 |
| MS.gene057358 | MS.gene20224 | 0.808298 | 3.32E-50 | -1.69E-46 |
| MS.gene057358 | MS.gene20231 | 0.807126 | 5.89E-50 | -1.69E-46 |
| MS.gene057358 | MS.gene21320 | 0.826403 | 2.77E-54 | -1.69E-46 |
| MS.gene057358 | MS.gene22466 | 0.810422 | 1.16E-50 | -1.69E-46 |
| MS.gene057358 | MS.gene22500 | 0.804857 | 1.77E-49 | -1.69E-46 |
| MS.gene057358 | MS.gene25797 | 0.818249 | 2.16E-52 | -1.69E-46 |
| MS.gene057358 | MS.gene28807 | 0.800663 | 1.30E-48 | -1.69E-46 |
| MS.gene057358 | MS.gene28867 | 0.833048 | 6.67E-56 | -1.69E-46 |
| MS.gene057358 | MS.gene35150 | 0.809191 | 2.14E-50 | -1.69E-46 |
| MS.gene057358 | MS.gene36485 | 0.803328 | 3.67E-49 | -1.69E-46 |
| MS.gene057358 | MS.gene37925 | 0.807451 | 5.02E-50 | -1.69E-46 |
| MS.gene057358 | MS.gene40329 | 0.820506 | 6.62E-53 | -1.69E-46 |
| MS.gene057358 | MS.gene40405 | 0.808073 | 3.70E-50 | -1.69E-46 |
| MS.gene057358 | MS.gene44100 | 0.849889 | 2.42E-60 | -1.69E-46 |
| MS.gene057358 | MS.gene47007 | 0.802354 | 5.84E-49 | -1.69E-46 |
| MS.gene057358 | MS.gene48067 | 0.824362 | 8.41E-54 | -1.69E-46 |
| MS.gene057358 | MS.gene49312 | 0.836668 | 8.18E-57 | -1.69E-46 |
| MS.gene057358 | MS.gene50484 | 0.809855 | 1.54E-50 | -1.69E-46 |
| MS.gene057358 | MS.gene50736 | 0.812134 | 4.94E-51 | -1.69E-46 |
| MS.gene057358 | MS.gene52980 | 0.800155 | 1.65E-48 | -1.69E-46 |
| MS.gene057358 | MS.gene57751 | 0.826302 | 2.92E-54 | -1.69E-46 |
| MS.gene057358 | MS.gene57752 | 0.812209 | 4.76E-51 | -1.69E-46 |
| MS.gene057358 | MS.gene58234 | 0.826276 | 2.97E-54 | -1.69E-46 |
| MS.gene057358 | MS.gene58754 | 0.808368 | 3.21E-50 | -1.69E-46 |
| MS.gene057358 | MS.gene61977 | 0.833006 | 6.83E-56 | -1.69E-46 |
| MS.gene057358 | MS.gene65301 | 0.805487 | 1.30E-49 | -1.69E-46 |
| MS.gene057358 | MS.gene70403 | 0.811784 | 5.89E-51 | -1.69E-46 |
| MS.gene057358 | MS.gene71431 | 0.840193 | 1.01E-57 | -1.69E-46 |
| MS.gene057358 | MS.gene74328 | 0.80104 | 1.09E-48 | -1.69E-46 |
| MS.gene057358 | MS.gene75318 | 0.822782 | 1.97E-53 | -1.69E-46 |
| MS.gene057358 | MS.gene75642 | 0.836197 | 1.08E-56 | -1.69E-46 |
| MS.gene057358 | MS.gene77563 | 0.819063 | 1.41E-52 | -1.69E-46 |
| MS.gene057358 | MS.gene78972 | 0.801892 | 7.26E-49 | -1.69E-46 |
| MS.gene057358 | MS.gene79251 | 0.840554 | 8.11E-58 | -1.69E-46 |
| MS.gene057358 | MS.gene79921 | 0.831521 | 1.59E-55 | -1.69E-46 |
| MS.gene057358 | MS.gene90876 | 0.802962 | 4.37E-49 | -1.69E-46 |
| MS.gene057358 | MS.gene91412 | 0.805674 | 1.19E-49 | -1.69E-46 |
| MS.gene057358 | MS.gene93102 | 0.805479 | 1.31E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 85 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAGTTCCTGAGTCATATT+TGG | 0.209473 | 3.1:-56878058 | MS.gene057358:CDS |
| GTTTCGGAGCTACAGAATTT+TGG | 0.235434 | 3.1:-56878299 | MS.gene057358:CDS |
| CAGCATTGCTTTGGCTGAAA+TGG | 0.280188 | 3.1:-56878079 | MS.gene057358:CDS |
| TTCTGCAGGTAATGACTTGC+AGG | 0.301595 | 3.1:-56878506 | MS.gene057358:intron |
| TTGTTGAATTAATACCTTCT+TGG | 0.307496 | 3.1:-56878647 | MS.gene057358:CDS |
| GAACATGTAGCTACTGCATT+TGG | 0.324852 | 3.1:-56878759 | MS.gene057358:intron |
| GCTTCGGGAACACGGGGAAC+GGG | 0.327886 | 3.1:+56878186 | None:intergenic |
| CTTGTTGCATTGGATCTTGC+TGG | 0.334600 | 3.1:+56877235 | None:intergenic |
| GTTAAGGACTTCATGCTTGA+TGG | 0.349943 | 3.1:-56877350 | MS.gene057358:CDS |
| GTAGTTGAACGGTTGGGATT+AGG | 0.362566 | 3.1:+56877392 | None:intergenic |
| CTTCTCACTGAGACCTGCTT+CGG | 0.374692 | 3.1:+56878170 | None:intergenic |
| CTACTGCATTTGGGCAACTT+TGG | 0.383497 | 3.1:-56878749 | MS.gene057358:CDS |
| AAAAGGGGTTTGCACTGCTT+TGG | 0.392592 | 3.1:-56879548 | MS.gene057358:CDS |
| ACCTCAAGTTTCTTTCCATC+AGG | 0.394767 | 3.1:+56878615 | None:intergenic |
| GGTGAAGATATGTCAGGTTC+AGG | 0.410078 | 3.1:-56879571 | MS.gene057358:CDS |
| GTTCAACTACAAAGTCTTCA+TGG | 0.412655 | 3.1:-56877379 | MS.gene057358:CDS |
| TTCTCACTGAGACCTGCTTC+GGG | 0.416408 | 3.1:+56878171 | None:intergenic |
| TCCTTGAAGCATCGGTTCCC+TGG | 0.420015 | 3.1:-56877281 | MS.gene057358:CDS |
| GTCTATCAACAGCATTGCTT+TGG | 0.420189 | 3.1:-56878088 | MS.gene057358:CDS |
| CAGGAAATATTAGACAGTTT+CGG | 0.426447 | 3.1:-56878315 | MS.gene057358:CDS |
| TGGAAGCTGCTATTTATCTA+TGG | 0.429701 | 3.1:-56877442 | MS.gene057358:CDS |
| GACTTTGTAGTTGAACGGTT+GGG | 0.435846 | 3.1:+56877386 | None:intergenic |
| GTTCCCCGTGTTCCCGAAGC+AGG | 0.436453 | 3.1:-56878183 | MS.gene057358:CDS |
| AACATGTAGCTACTGCATTT+GGG | 0.437715 | 3.1:-56878758 | MS.gene057358:intron |
| AATGCCATTACTAATCTTTG+TGG | 0.444234 | 3.1:-56879517 | MS.gene057358:intron |
| TGCTTCGGGAACACGGGGAA+CGG | 0.446615 | 3.1:+56878185 | None:intergenic |
| GAATTGGAACCTTGTTGCAT+TGG | 0.446692 | 3.1:+56877225 | None:intergenic |
| TTATCGAGTTTGCGAAGGGC+TGG | 0.449399 | 3.1:+56878456 | None:intergenic |
| GATATGTCAGGTTCAGGAAA+AGG | 0.450921 | 3.1:-56879565 | MS.gene057358:CDS |
| CAGAATGGAAGAACTTGCCT+TGG | 0.450957 | 3.1:-56877572 | MS.gene057358:CDS |
| TCTTTCTTCTCACAAGGTAG+TGG | 0.451314 | 3.1:+56878717 | None:intergenic |
| AGCCGCTGATTCAGAAGGTT+CGG | 0.452812 | 3.1:-56878256 | MS.gene057358:CDS |
| TCAGGAAATGTTTGCCAAGA+AGG | 0.453625 | 3.1:+56878633 | None:intergenic |
| TTCTAAATTCCTTGAAGCAT+CGG | 0.455660 | 3.1:-56877289 | MS.gene057358:CDS |
| GCCAGGGAACCGATGCTTCA+AGG | 0.460031 | 3.1:+56877280 | None:intergenic |
| ATATGTCAGGTTCAGGAAAA+GGG | 0.474996 | 3.1:-56879564 | MS.gene057358:CDS |
| GTTGATGCAAATATCTGTCC+TGG | 0.487154 | 3.1:+56878482 | None:intergenic |
| AGAAATGTGGCAAAGAGAGA+TGG | 0.490084 | 3.1:-56878697 | MS.gene057358:CDS |
| TCTTGGCAAACATTTCCTGA+TGG | 0.512838 | 3.1:-56878630 | MS.gene057358:CDS |
| CTGAATTGACTTGCGAAAAG+AGG | 0.513814 | 3.1:+56878233 | None:intergenic |
| AAGGTAGTTTGAGTTAAGCC+AGG | 0.520536 | 3.1:+56877263 | None:intergenic |
| CTTCGGGAACACGGGGAACG+GGG | 0.523029 | 3.1:+56878187 | None:intergenic |
| CACATTTCTTTCTTCTCACA+AGG | 0.525180 | 3.1:+56878711 | None:intergenic |
| GAGACCTGCTTCGGGAACAC+GGG | 0.529025 | 3.1:+56878179 | None:intergenic |
| AGATTTGCAAAATTGTTGCT+AGG | 0.530179 | 3.1:-56879592 | MS.gene057358:CDS |
| TTGCTAGGTGAAGATATGTC+AGG | 0.530876 | 3.1:-56879577 | MS.gene057358:CDS |
| TTCAACTACAAAGTCTTCAT+GGG | 0.532814 | 3.1:-56877378 | MS.gene057358:CDS |
| TGAGACCTGCTTCGGGAACA+CGG | 0.534669 | 3.1:+56878178 | None:intergenic |
| TTGGATCTTGCTGGTATCCA+AGG | 0.534759 | 3.1:+56877244 | None:intergenic |
| CGAGTTTGCGAAGGGCTGGA+AGG | 0.544385 | 3.1:+56878460 | None:intergenic |
| AGACTTTGTAGTTGAACGGT+TGG | 0.547598 | 3.1:+56877385 | None:intergenic |
| AGGTAATGACTTGCAGGCCC+AGG | 0.549183 | 3.1:-56878500 | MS.gene057358:CDS |
| TGGCTTAACTCAAACTACCT+TGG | 0.552224 | 3.1:-56877261 | MS.gene057358:CDS |
| CATACCACAAAGATTAGTAA+TGG | 0.555497 | 3.1:+56879513 | None:intergenic |
| ATGAAGACTTTGTAGTTGAA+CGG | 0.561493 | 3.1:+56877381 | None:intergenic |
| TGGGATTAGGCGTTGATCTG+TGG | 0.563972 | 3.1:+56877405 | None:intergenic |
| CACATCAGATCAATTCTCCT+CGG | 0.578395 | 3.1:-56877528 | MS.gene057358:CDS |
| AACAGATGTTGATATGATGA+AGG | 0.579015 | 3.1:-56879617 | None:intergenic |
| GCATGTTATCGAGTTTGCGA+AGG | 0.584286 | 3.1:+56878451 | None:intergenic |
| ATTGTAGCCGCTGATTCAGA+AGG | 0.591209 | 3.1:-56878261 | MS.gene057358:CDS |
| CATGTTATCGAGTTTGCGAA+GGG | 0.595448 | 3.1:+56878452 | None:intergenic |
| TATGTCAGGTTCAGGAAAAG+GGG | 0.595512 | 3.1:-56879563 | MS.gene057358:CDS |
| TAGAAGTGAGACCTTGGGGA+GGG | 0.597116 | 3.1:+56878032 | None:intergenic |
| TTGATGCAAATATCTGTCCT+GGG | 0.598206 | 3.1:+56878483 | None:intergenic |
| TGTGGCAAAGAGAGATGGAA+TGG | 0.599356 | 3.1:-56878692 | MS.gene057358:CDS |
| ATCGGTAAATAAAATCTCCA+AGG | 0.602171 | 3.1:+56877555 | None:intergenic |
| AGGGTTTCCAAATATGACTC+AGG | 0.603777 | 3.1:+56878051 | None:intergenic |
| AGAGGTCTAAACAATCAAGT+AGG | 0.606917 | 3.1:+56877501 | None:intergenic |
| AGGTAGTTTGAGTTAAGCCA+GGG | 0.610626 | 3.1:+56877264 | None:intergenic |
| AGCGGCAAGAAGAGAAGTGG+TGG | 0.627026 | 3.1:-56878212 | MS.gene057358:CDS |
| TTCAGCGGCAAGAAGAGAAG+TGG | 0.628274 | 3.1:-56878215 | MS.gene057358:CDS |
| CAGCAAGATCCAATGCAACA+AGG | 0.629004 | 3.1:-56877234 | None:intergenic |
| TCCTGATGGAAAGAAACTTG+AGG | 0.634337 | 3.1:-56878616 | MS.gene057358:intron |
| ATTGATCTGATGTGATGTAT+CGG | 0.636126 | 3.1:+56877537 | None:intergenic |
| AGACCTGCTTCGGGAACACG+GGG | 0.636721 | 3.1:+56878180 | None:intergenic |
| GTGCAATATGTTCAGAAGAG+AGG | 0.640548 | 3.1:+56877483 | None:intergenic |
| TCAACTACAAAGTCTTCATG+GGG | 0.644332 | 3.1:-56877377 | MS.gene057358:CDS |
| ATATTTGGAAACCCTCCCCA+AGG | 0.663884 | 3.1:-56878043 | MS.gene057358:intron |
| CTTGTGAGAAGAAAGAAATG+TGG | 0.666461 | 3.1:-56878710 | MS.gene057358:CDS |
| GGCCGAACCTTCTGAATCAG+CGG | 0.670869 | 3.1:+56878254 | None:intergenic |
| TTAGAAGTGAGACCTTGGGG+AGG | 0.695345 | 3.1:+56878031 | None:intergenic |
| ACAATCAAGTAGGCACTCCG+AGG | 0.706887 | 3.1:+56877511 | None:intergenic |
| GATAAATAGCAGCTTCCACG+CGG | 0.726168 | 3.1:+56877447 | None:intergenic |
| ACTCGAGATTGCAAACCGCG+TGG | 0.746691 | 3.1:-56877462 | MS.gene057358:CDS |
| CAACTACAAAGTCTTCATGG+GGG | 0.781366 | 3.1:-56877376 | MS.gene057358:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAAATGTAAATTAAT+TGG | + | chr3.1:56878508-56878527 | None:intergenic | 10.0% |
| !! | ATCATAATAATTCACATATA+TGG | + | chr3.1:56878298-56878317 | None:intergenic | 15.0% |
| !! | TATTTATCTTAGTCATAAAA+TGG | + | chr3.1:56878872-56878891 | None:intergenic | 15.0% |
| !!! | ATTTTATGACTAAGATAAAT+AGG | - | chr3.1:56878871-56878890 | MS.gene057358:intron | 15.0% |
| !!! | TATTTTATCAATTTACAGAA+TGG | - | chr3.1:56879260-56879279 | MS.gene057358:intron | 15.0% |
| !!! | TTTTATGACTAAGATAAATA+GGG | - | chr3.1:56878872-56878891 | MS.gene057358:intron | 15.0% |
| !! | AAAATTTGTCAACTACAATA+TGG | + | chr3.1:56877375-56877394 | None:intergenic | 20.0% |
| !! | TGTTATTAATTCCAAAAGAA+TGG | + | chr3.1:56877690-56877709 | None:intergenic | 20.0% |
| !! | TGTTATTAATTTCAAAAGGA+TGG | - | chr3.1:56877864-56877883 | MS.gene057358:intron | 20.0% |
| !!! | AATATCTATTTGAGTTGATT+AGG | - | chr3.1:56877527-56877546 | MS.gene057358:CDS | 20.0% |
| !!! | ATGGTGTTATTAATTTCAAA+AGG | - | chr3.1:56877860-56877879 | MS.gene057358:intron | 20.0% |
| !!! | TAAAATTGATTTTGACATGT+TGG | - | chr3.1:56877502-56877521 | MS.gene057358:CDS | 20.0% |
| !!! | TAATTATGTGTTTCTTTTCA+TGG | - | chr3.1:56877449-56877468 | MS.gene057358:CDS | 20.0% |
| !!! | TGATTATGATGTTTCTAATA+TGG | - | chr3.1:56878314-56878333 | MS.gene057358:CDS | 20.0% |
| !!! | TTTACATTTTCTTTTAACAC+AGG | - | chr3.1:56878513-56878532 | MS.gene057358:intron | 20.0% |
| ! | AAAGAAACTTGAGGTAAATT+TGG | - | chr3.1:56878240-56878259 | MS.gene057358:CDS | 25.0% |
| ! | CATACAACTTATTGTTTGTT+TGG | + | chr3.1:56878041-56878060 | None:intergenic | 25.0% |
| ! | GTCTTTCTATATGAAATCAA+TGG | + | chr3.1:56878929-56878948 | None:intergenic | 25.0% |
| ! | TCTTAGTCATAAAATGGAAT+AGG | + | chr3.1:56878866-56878885 | None:intergenic | 25.0% |
| ! | TTAATTGACAGAAGATTAAC+TGG | + | chr3.1:56879208-56879227 | None:intergenic | 25.0% |
| ! | TTGTAAAAGAGAGTTCAATT+TGG | + | chr3.1:56877980-56877999 | None:intergenic | 25.0% |
| ! | TTGTTGAATTAATACCTTCT+TGG | - | chr3.1:56878200-56878219 | MS.gene057358:CDS | 25.0% |
| !! | GTAGTTGACAAATTTTCTTT+TGG | - | chr3.1:56877379-56877398 | MS.gene057358:CDS | 25.0% |
| !!! | CTAACACTCTTTTTTTTGAT+TGG | - | chr3.1:56877713-56877732 | MS.gene057358:intron | 25.0% |
| !!! | TTCTTTTGGTTTGTTTAAGT+TGG | - | chr3.1:56877393-56877412 | MS.gene057358:CDS | 25.0% |
| AAAGAGAGTTCAATTTGGAA+TGG | + | chr3.1:56877975-56877994 | None:intergenic | 30.0% | |
| AACCATTCGATCTAAACTAA+TGG | + | chr3.1:56878993-56879012 | None:intergenic | 30.0% | |
| AATGCCATTACTAATCTTTG+TGG | - | chr3.1:56877330-56877349 | MS.gene057358:CDS | 30.0% | |
| AGATTTGCAAAATTGTTGCT+AGG | - | chr3.1:56877255-56877274 | MS.gene057358:CDS | 30.0% | |
| ATATGCCCAAGTCTATAATA+GGG | + | chr3.1:56879088-56879107 | None:intergenic | 30.0% | |
| ATCGGTAAATAAAATCTCCA+AGG | + | chr3.1:56879295-56879314 | None:intergenic | 30.0% | |
| ATGAAGACTTTGTAGTTGAA+CGG | + | chr3.1:56879469-56879488 | None:intergenic | 30.0% | |
| ATTCCAAAAGAATGGTAGTT+TGG | + | chr3.1:56877682-56877701 | None:intergenic | 30.0% | |
| ATTGATCTGATGTGATGTAT+CGG | + | chr3.1:56879313-56879332 | None:intergenic | 30.0% | |
| ATTTCAAAAGGATGGTAGTT+TGG | - | chr3.1:56877872-56877891 | MS.gene057358:intron | 30.0% | |
| CAGGAAATATTAGACAGTTT+CGG | - | chr3.1:56878532-56878551 | MS.gene057358:intron | 30.0% | |
| CATACCACAAAGATTAGTAA+TGG | + | chr3.1:56877337-56877356 | None:intergenic | 30.0% | |
| CATTACCCTATTATAGACTT+GGG | - | chr3.1:56879080-56879099 | MS.gene057358:intron | 30.0% | |
| CTAAGTGTTAAAAACACGTT+TGG | + | chr3.1:56877601-56877620 | None:intergenic | 30.0% | |
| TGGAATAGGCTATAGAAAAA+AGG | + | chr3.1:56878852-56878871 | None:intergenic | 30.0% | |
| TTAACTGGAGAATATTTCAC+AGG | + | chr3.1:56879193-56879212 | None:intergenic | 30.0% | |
| TTCAACTACAAAGTCTTCAT+GGG | - | chr3.1:56879469-56879488 | MS.gene057358:intron | 30.0% | |
| TTCTAAATTCCTTGAAGCAT+CGG | - | chr3.1:56879558-56879577 | MS.gene057358:CDS | 30.0% | |
| ! | AACCATTAGTTTAGATCGAA+TGG | - | chr3.1:56878988-56879007 | MS.gene057358:intron | 30.0% |
| ! | ATGTGTTTCTTTTCATGGTA+AGG | - | chr3.1:56877454-56877473 | MS.gene057358:CDS | 30.0% |
| ! | TATCGAATCTTGTTCTTTTG+CGG | - | chr3.1:56878429-56878448 | MS.gene057358:intron | 30.0% |
| ! | TTCATGTAAAAGTGAGTTGA+AGG | + | chr3.1:56877936-56877955 | None:intergenic | 30.0% |
| !! | GAATTTTGGTATGTTGATCA+AGG | - | chr3.1:56878562-56878581 | MS.gene057358:intron | 30.0% |
| AACATGTAGCTACTGCATTT+GGG | - | chr3.1:56878089-56878108 | MS.gene057358:CDS | 35.0% | |
| AGAGGTCTAAACAATCAAGT+AGG | + | chr3.1:56879349-56879368 | None:intergenic | 35.0% | |
| ATACCAATACCATCATGTCT+AGG | - | chr3.1:56877768-56877787 | MS.gene057358:intron | 35.0% | |
| ATATGTCAGGTTCAGGAAAA+GGG | - | chr3.1:56877283-56877302 | MS.gene057358:CDS | 35.0% | |
| ATGGTGATAGTTTCAGCATT+GGG | + | chr3.1:56878279-56878298 | None:intergenic | 35.0% | |
| CAAAAAAAGAGTGGTGGTAA+TGG | - | chr3.1:56877841-56877860 | MS.gene057358:intron | 35.0% | |
| CACATTTCTTTCTTCTCACA+AGG | + | chr3.1:56878139-56878158 | None:intergenic | 35.0% | |
| CCAAGTCTATAATAGGGTAA+TGG | + | chr3.1:56879082-56879101 | None:intergenic | 35.0% | |
| CCATTACCCTATTATAGACT+TGG | - | chr3.1:56879079-56879098 | MS.gene057358:intron | 35.0% | |
| CTTGTGAGAAGAAAGAAATG+TGG | - | chr3.1:56878137-56878156 | MS.gene057358:CDS | 35.0% | |
| GATATGCCCAAGTCTATAAT+AGG | + | chr3.1:56879089-56879108 | None:intergenic | 35.0% | |
| GATCTCATACACCTATTCAT+CGG | + | chr3.1:56879060-56879079 | None:intergenic | 35.0% | |
| GCTACAGTCATAAAAAAGCT+GGG | + | chr3.1:56877639-56877658 | None:intergenic | 35.0% | |
| GTGTCCAATCAAAAAAAGAG+TGG | - | chr3.1:56877832-56877851 | MS.gene057358:intron | 35.0% | |
| GTTCAACTACAAAGTCTTCA+TGG | - | chr3.1:56879468-56879487 | MS.gene057358:intron | 35.0% | |
| TAGGGATTCAGATTTACACA+CGG | - | chr3.1:56878890-56878909 | MS.gene057358:intron | 35.0% | |
| TAGTTTAGATCGAATGGTTG+AGG | - | chr3.1:56878994-56879013 | MS.gene057358:intron | 35.0% | |
| TATGGTGATAGTTTCAGCAT+TGG | + | chr3.1:56878280-56878299 | None:intergenic | 35.0% | |
| TATGTTAGAAGTGAGACCTT+GGG | + | chr3.1:56878823-56878842 | None:intergenic | 35.0% | |
| TCAACTACAAAGTCTTCATG+GGG | - | chr3.1:56879470-56879489 | MS.gene057358:intron | 35.0% | |
| TCCAATCAAAAAAAGAGTGG+TGG | - | chr3.1:56877835-56877854 | MS.gene057358:intron | 35.0% | |
| TCTAATATGGTTCATTCTGC+AGG | - | chr3.1:56878327-56878346 | MS.gene057358:intron | 35.0% | |
| TGCTACAGTCATAAAAAAGC+TGG | + | chr3.1:56877640-56877659 | None:intergenic | 35.0% | |
| TTATAGACTTGGGCATATCT+TGG | - | chr3.1:56879090-56879109 | MS.gene057358:intron | 35.0% | |
| TTATGTTAGAAGTGAGACCT+TGG | + | chr3.1:56878824-56878843 | None:intergenic | 35.0% | |
| TTGATGCAAATATCTGTCCT+GGG | + | chr3.1:56878367-56878386 | None:intergenic | 35.0% | |
| ! | GAAACTTGTTTCCGATGAAT+AGG | - | chr3.1:56879046-56879065 | MS.gene057358:intron | 35.0% |
| ! | GTACCAAACTACCATTCTTT+TGG | - | chr3.1:56877676-56877695 | MS.gene057358:intron | 35.0% |
| ! | TGGAAGCTGCTATTTATCTA+TGG | - | chr3.1:56879405-56879424 | MS.gene057358:intron | 35.0% |
| !! | TGGTTTGTTTAAGTTGGCAA+AGG | - | chr3.1:56877399-56877418 | MS.gene057358:CDS | 35.0% |
| !!! | ACCACCACTCTTTTTTTGAT+TGG | + | chr3.1:56877839-56877858 | None:intergenic | 35.0% |
| ACCTCAAGTTTCTTTCCATC+AGG | + | chr3.1:56878235-56878254 | None:intergenic | 40.0% | |
| ACTGGAGAATATTTCACAGG+AGG | + | chr3.1:56879190-56879209 | None:intergenic | 40.0% | |
| AGAAATGTGGCAAAGAGAGA+TGG | - | chr3.1:56878150-56878169 | MS.gene057358:CDS | 40.0% | |
| AGACTTTGTAGTTGAACGGT+TGG | + | chr3.1:56879465-56879484 | None:intergenic | 40.0% | |
| AGGGTTTCCAAATATGACTC+AGG | + | chr3.1:56878799-56878818 | None:intergenic | 40.0% | |
| ATGTTAGAAGTGAGACCTTG+GGG | + | chr3.1:56878822-56878841 | None:intergenic | 40.0% | |
| CAACTACAAAGTCTTCATGG+GGG | - | chr3.1:56879471-56879490 | MS.gene057358:intron | 40.0% | |
| CAATACCATCATGTCTAGGA+TGG | - | chr3.1:56877772-56877791 | MS.gene057358:intron | 40.0% | |
| CAATACCATCCTAGACATGA+TGG | + | chr3.1:56877780-56877799 | None:intergenic | 40.0% | |
| CACATCAGATCAATTCTCCT+CGG | - | chr3.1:56879319-56879338 | MS.gene057358:intron | 40.0% | |
| CATCCTAGACATGATGGTAT+TGG | + | chr3.1:56877774-56877793 | None:intergenic | 40.0% | |
| CATGTTATCGAGTTTGCGAA+GGG | + | chr3.1:56878398-56878417 | None:intergenic | 40.0% | |
| CTGTATGATGCAATTACTGC+AGG | - | chr3.1:56879024-56879043 | MS.gene057358:intron | 40.0% | |
| GAACATGTAGCTACTGCATT+TGG | - | chr3.1:56878088-56878107 | MS.gene057358:CDS | 40.0% | |
| GACTTTGTAGTTGAACGGTT+GGG | + | chr3.1:56879464-56879483 | None:intergenic | 40.0% | |
| GATATGTCAGGTTCAGGAAA+AGG | - | chr3.1:56877282-56877301 | MS.gene057358:CDS | 40.0% | |
| GGAAGTTCCTGAGTCATATT+TGG | - | chr3.1:56878789-56878808 | MS.gene057358:intron | 40.0% | |
| GTCTATCAACAGCATTGCTT+TGG | - | chr3.1:56878759-56878778 | MS.gene057358:intron | 40.0% | |
| GTGCAATATGTTCAGAAGAG+AGG | + | chr3.1:56879367-56879386 | None:intergenic | 40.0% | |
| GTTAAGGACTTCATGCTTGA+TGG | - | chr3.1:56879497-56879516 | MS.gene057358:intron | 40.0% | |
| GTTGATGCAAATATCTGTCC+TGG | + | chr3.1:56878368-56878387 | None:intergenic | 40.0% | |
| TATGTCAGGTTCAGGAAAAG+GGG | - | chr3.1:56877284-56877303 | MS.gene057358:CDS | 40.0% | |
| TCAGGAAATGTTTGCCAAGA+AGG | + | chr3.1:56878217-56878236 | None:intergenic | 40.0% | |
| TCCACTAGTATTGTGACATG+TGG | - | chr3.1:56877744-56877763 | MS.gene057358:intron | 40.0% | |
| TCCTGATGGAAAGAAACTTG+AGG | - | chr3.1:56878231-56878250 | MS.gene057358:CDS | 40.0% | |
| TCTTGGCAAACATTTCCTGA+TGG | - | chr3.1:56878217-56878236 | MS.gene057358:CDS | 40.0% | |
| TCTTTCTTCTCACAAGGTAG+TGG | + | chr3.1:56878133-56878152 | None:intergenic | 40.0% | |
| TGGCTTAACTCAAACTACCT+TGG | - | chr3.1:56879586-56879605 | MS.gene057358:CDS | 40.0% | |
| TTGCTAGGTGAAGATATGTC+AGG | - | chr3.1:56877270-56877289 | MS.gene057358:CDS | 40.0% | |
| ! | AAGGTAGTTTGAGTTAAGCC+AGG | + | chr3.1:56879587-56879606 | None:intergenic | 40.0% |
| ! | AGGTAGTTTGAGTTAAGCCA+GGG | + | chr3.1:56879586-56879605 | None:intergenic | 40.0% |
| ! | CATCATGTCTAGGATGGTAT+TGG | - | chr3.1:56877778-56877797 | MS.gene057358:intron | 40.0% |
| ! | CTTTTCGCAAGTCAATTCAG+CGG | - | chr3.1:56878617-56878636 | MS.gene057358:CDS | 40.0% |
| ! | GTTTCGGAGCTACAGAATTT+TGG | - | chr3.1:56878548-56878567 | MS.gene057358:intron | 40.0% |
| !! | CTGAATTGACTTGCGAAAAG+AGG | + | chr3.1:56878617-56878636 | None:intergenic | 40.0% |
| AAAAGGGGTTTGCACTGCTT+TGG | - | chr3.1:56877299-56877318 | MS.gene057358:CDS | 45.0% | |
| ATATTTGGAAACCCTCCCCA+AGG | - | chr3.1:56878804-56878823 | MS.gene057358:intron | 45.0% | |
| CAGAATGGAAGAACTTGCCT+TGG | - | chr3.1:56879275-56879294 | MS.gene057358:intron | 45.0% | |
| CAGCATTGCTTTGGCTGAAA+TGG | - | chr3.1:56878768-56878787 | MS.gene057358:intron | 45.0% | |
| CTACTGCATTTGGGCAACTT+TGG | - | chr3.1:56878098-56878117 | MS.gene057358:CDS | 45.0% | |
| CTTGTTGCATTGGATCTTGC+TGG | + | chr3.1:56879615-56879634 | None:intergenic | 45.0% | |
| GATAAATAGCAGCTTCCACG+CGG | + | chr3.1:56879403-56879422 | None:intergenic | 45.0% | |
| GCATGTTATCGAGTTTGCGA+AGG | + | chr3.1:56878399-56878418 | None:intergenic | 45.0% | |
| GCCACATGTCACAATACTAG+TGG | + | chr3.1:56877748-56877767 | None:intergenic | 45.0% | |
| GGCATGTGTCTCGATACTAT+TGG | - | chr3.1:56877804-56877823 | MS.gene057358:intron | 45.0% | |
| GGTGAAGATATGTCAGGTTC+AGG | - | chr3.1:56877276-56877295 | MS.gene057358:CDS | 45.0% | |
| GTAGTTGAACGGTTGGGATT+AGG | + | chr3.1:56879458-56879477 | None:intergenic | 45.0% | |
| TACAAAGTCTTCATGGGGGA+TGG | - | chr3.1:56879475-56879494 | MS.gene057358:intron | 45.0% | |
| TGTGGCAAAGAGAGATGGAA+TGG | - | chr3.1:56878155-56878174 | MS.gene057358:CDS | 45.0% | |
| TTGGATCTTGCTGGTATCCA+AGG | + | chr3.1:56879606-56879625 | None:intergenic | 45.0% | |
| ! | TTCTGCAGGTAATGACTTGC+AGG | - | chr3.1:56878341-56878360 | MS.gene057358:intron | 45.0% |
| !! | ATTGTAGCCGCTGATTCAGA+AGG | - | chr3.1:56878586-56878605 | MS.gene057358:intron | 45.0% |
| !! | GGCACACTAGTAGTTCTAGT+CGG | - | chr3.1:56878450-56878469 | MS.gene057358:CDS | 45.0% |
| !! | TGTCTAGGATGGTATTGGTG+TGG | - | chr3.1:56877783-56877802 | MS.gene057358:intron | 45.0% |
| ACAATCAAGTAGGCACTCCG+AGG | + | chr3.1:56879339-56879358 | None:intergenic | 50.0% | |
| CTTCTCACTGAGACCTGCTT+CGG | + | chr3.1:56878680-56878699 | None:intergenic | 50.0% | |
| GTCTTCATGGGGGATGGTTA+AGG | - | chr3.1:56879481-56879500 | MS.gene057358:intron | 50.0% | |
| TAGAAGTGAGACCTTGGGGA+GGG | + | chr3.1:56878818-56878837 | None:intergenic | 50.0% | |
| TTAGAAGTGAGACCTTGGGG+AGG | + | chr3.1:56878819-56878838 | None:intergenic | 50.0% | |
| TTATCGAGTTTGCGAAGGGC+TGG | + | chr3.1:56878394-56878413 | None:intergenic | 50.0% | |
| TTCAGCGGCAAGAAGAGAAG+TGG | - | chr3.1:56878632-56878651 | MS.gene057358:CDS | 50.0% | |
| TTCTCACTGAGACCTGCTTC+GGG | + | chr3.1:56878679-56878698 | None:intergenic | 50.0% | |
| !! | AGCCGCTGATTCAGAAGGTT+CGG | - | chr3.1:56878591-56878610 | MS.gene057358:intron | 50.0% |
| !! | TGGGATTAGGCGTTGATCTG+TGG | + | chr3.1:56879445-56879464 | None:intergenic | 50.0% |
| ACTCGAGATTGCAAACCGCG+TGG | - | chr3.1:56879385-56879404 | MS.gene057358:intron | 55.0% | |
| AGCGGCAAGAAGAGAAGTGG+TGG | - | chr3.1:56878635-56878654 | MS.gene057358:CDS | 55.0% | |
| GGCCGAACCTTCTGAATCAG+CGG | + | chr3.1:56878596-56878615 | None:intergenic | 55.0% | |
| TGAGACCTGCTTCGGGAACA+CGG | + | chr3.1:56878672-56878691 | None:intergenic | 55.0% | |
| ! | AGGTAATGACTTGCAGGCCC+AGG | - | chr3.1:56878347-56878366 | MS.gene057358:intron | 55.0% |
| !! | TCCTTGAAGCATCGGTTCCC+TGG | - | chr3.1:56879566-56879585 | MS.gene057358:CDS | 55.0% |
| AGACCTGCTTCGGGAACACG+GGG | + | chr3.1:56878670-56878689 | None:intergenic | 60.0% | |
| CGAGTTTGCGAAGGGCTGGA+AGG | + | chr3.1:56878390-56878409 | None:intergenic | 60.0% | |
| CGCGCGCTTGCAGAGAATGT+AGG | + | chr3.1:56879125-56879144 | None:intergenic | 60.0% | |
| GAGACCTGCTTCGGGAACAC+GGG | + | chr3.1:56878671-56878690 | None:intergenic | 60.0% | |
| GCCAGGGAACCGATGCTTCA+AGG | + | chr3.1:56879570-56879589 | None:intergenic | 60.0% | |
| TGCTTCGGGAACACGGGGAA+CGG | + | chr3.1:56878665-56878684 | None:intergenic | 60.0% | |
| CTTCGGGAACACGGGGAACG+GGG | + | chr3.1:56878663-56878682 | None:intergenic | 65.0% | |
| GCTTCGGGAACACGGGGAAC+GGG | + | chr3.1:56878664-56878683 | None:intergenic | 65.0% | |
| GTTCCCCGTGTTCCCGAAGC+AGG | - | chr3.1:56878664-56878683 | MS.gene057358:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 56877235 | 56879634 | 56877235 | ID=MS.gene057358 |
| chr3.1 | mRNA | 56877235 | 56879634 | 56877235 | ID=MS.gene057358.t1;Parent=MS.gene057358 |
| chr3.1 | exon | 56879518 | 56879634 | 56879518 | ID=MS.gene057358.t1.exon1;Parent=MS.gene057358.t1 |
| chr3.1 | CDS | 56879518 | 56879634 | 56879518 | ID=cds.MS.gene057358.t1;Parent=MS.gene057358.t1 |
| chr3.1 | exon | 56878617 | 56878771 | 56878617 | ID=MS.gene057358.t1.exon2;Parent=MS.gene057358.t1 |
| chr3.1 | CDS | 56878617 | 56878771 | 56878617 | ID=cds.MS.gene057358.t1;Parent=MS.gene057358.t1 |
| chr3.1 | exon | 56878446 | 56878520 | 56878446 | ID=MS.gene057358.t1.exon3;Parent=MS.gene057358.t1 |
| chr3.1 | CDS | 56878446 | 56878520 | 56878446 | ID=cds.MS.gene057358.t1;Parent=MS.gene057358.t1 |
| chr3.1 | exon | 56878044 | 56878334 | 56878044 | ID=MS.gene057358.t1.exon4;Parent=MS.gene057358.t1 |
| chr3.1 | CDS | 56878044 | 56878334 | 56878044 | ID=cds.MS.gene057358.t1;Parent=MS.gene057358.t1 |
| chr3.1 | exon | 56877235 | 56877591 | 56877235 | ID=MS.gene057358.t1.exon5;Parent=MS.gene057358.t1 |
| chr3.1 | CDS | 56877235 | 56877591 | 56877235 | ID=cds.MS.gene057358.t1;Parent=MS.gene057358.t1 |
| Gene Sequence |
| Protein sequence |
