Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43782.t1 | XP_003615604.1 | 100 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 2.60E-27 | 131.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43782.t1 | G7K6C4 | 100.0 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.9e-27 | 131.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene43782 | 0.823468 | 1.36E-53 | -1.69E-46 |
| MS.gene049150 | MS.gene43782 | 0.854472 | 1.20E-61 | -1.69E-46 |
| MS.gene049151 | MS.gene43782 | 0.834994 | 2.17E-56 | -1.69E-46 |
| MS.gene049153 | MS.gene43782 | 0.858521 | 7.78E-63 | -1.69E-46 |
| MS.gene049170 | MS.gene43782 | 0.828693 | 7.80E-55 | -1.69E-46 |
| MS.gene049260 | MS.gene43782 | 0.805934 | 1.05E-49 | -1.69E-46 |
| MS.gene049346 | MS.gene43782 | 0.842681 | 2.23E-58 | -1.69E-46 |
| MS.gene049356 | MS.gene43782 | 0.881547 | 2.19E-70 | -1.69E-46 |
| MS.gene049369 | MS.gene43782 | 0.822161 | 2.75E-53 | -1.69E-46 |
| MS.gene049378 | MS.gene43782 | 0.802368 | 5.80E-49 | -1.69E-46 |
| MS.gene049389 | MS.gene43782 | 0.815205 | 1.04E-51 | -1.69E-46 |
| MS.gene049491 | MS.gene43782 | 0.838184 | 3.34E-57 | -1.69E-46 |
| MS.gene049661 | MS.gene43782 | 0.825582 | 4.33E-54 | -1.69E-46 |
| MS.gene049662 | MS.gene43782 | 0.825914 | 3.61E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene43782 | 0.889581 | 2.13E-73 | -1.69E-46 |
| MS.gene049910 | MS.gene43782 | 0.877754 | 4.88E-69 | -1.69E-46 |
| MS.gene049915 | MS.gene43782 | 0.850671 | 1.46E-60 | -1.69E-46 |
| MS.gene050060 | MS.gene43782 | 0.82788 | 1.22E-54 | -1.69E-46 |
| MS.gene050076 | MS.gene43782 | 0.800976 | 1.12E-48 | -1.69E-46 |
| MS.gene050128 | MS.gene43782 | 0.860302 | 2.27E-63 | -1.69E-46 |
| MS.gene050301 | MS.gene43782 | 0.894084 | 3.44E-75 | -1.69E-46 |
| MS.gene050397 | MS.gene43782 | 0.840037 | 1.11E-57 | -1.69E-46 |
| MS.gene050398 | MS.gene43782 | 0.802295 | 6.00E-49 | -1.69E-46 |
| MS.gene050404 | MS.gene43782 | 0.80228 | 6.05E-49 | -1.69E-46 |
| MS.gene050406 | MS.gene43782 | 0.831618 | 1.51E-55 | -1.69E-46 |
| MS.gene050426 | MS.gene43782 | -0.840693 | 7.46E-58 | -1.69E-46 |
| MS.gene050432 | MS.gene43782 | 0.844143 | 9.07E-59 | -1.69E-46 |
| MS.gene050464 | MS.gene43782 | 0.852682 | 3.93E-61 | -1.69E-46 |
| MS.gene050529 | MS.gene43782 | 0.855612 | 5.61E-62 | -1.69E-46 |
| MS.gene050558 | MS.gene43782 | 0.811087 | 8.34E-51 | -1.69E-46 |
| MS.gene050642 | MS.gene43782 | 0.833028 | 6.75E-56 | -1.69E-46 |
| MS.gene050670 | MS.gene43782 | 0.899056 | 2.89E-77 | -1.69E-46 |
| MS.gene050812 | MS.gene43782 | 0.805298 | 1.43E-49 | -1.69E-46 |
| MS.gene050900 | MS.gene43782 | 0.84142 | 4.80E-58 | -1.69E-46 |
| MS.gene050971 | MS.gene43782 | 0.840064 | 1.09E-57 | -1.69E-46 |
| MS.gene05101 | MS.gene43782 | 0.832505 | 9.10E-56 | -1.69E-46 |
| MS.gene05105 | MS.gene43782 | 0.868229 | 7.62E-66 | -1.69E-46 |
| MS.gene05119 | MS.gene43782 | -0.823671 | 1.22E-53 | -1.69E-46 |
| MS.gene051360 | MS.gene43782 | 0.857225 | 1.89E-62 | -1.69E-46 |
| MS.gene051471 | MS.gene43782 | 0.814372 | 1.59E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene43782 | 0.840936 | 6.44E-58 | -1.69E-46 |
| MS.gene051582 | MS.gene43782 | 0.851762 | 7.19E-61 | -1.69E-46 |
| MS.gene051605 | MS.gene43782 | 0.819734 | 9.94E-53 | -1.69E-46 |
| MS.gene051663 | MS.gene43782 | 0.808587 | 2.88E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene43782 | 0.859652 | 3.57E-63 | -1.69E-46 |
| MS.gene051983 | MS.gene43782 | 0.859151 | 5.04E-63 | -1.69E-46 |
| MS.gene052011 | MS.gene43782 | -0.835198 | 1.93E-56 | -1.69E-46 |
| MS.gene052077 | MS.gene43782 | 0.899733 | 1.48E-77 | -1.69E-46 |
| MS.gene052078 | MS.gene43782 | 0.838411 | 2.92E-57 | -1.69E-46 |
| MS.gene052134 | MS.gene43782 | 0.815144 | 1.07E-51 | -1.69E-46 |
| MS.gene052135 | MS.gene43782 | 0.836895 | 7.16E-57 | -1.69E-46 |
| MS.gene052136 | MS.gene43782 | 0.814286 | 1.66E-51 | -1.69E-46 |
| MS.gene052178 | MS.gene43782 | 0.823614 | 1.26E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene43782 | 0.929791 | 4.18E-93 | -1.69E-46 |
| MS.gene052253 | MS.gene43782 | 0.892638 | 1.32E-74 | -1.69E-46 |
| MS.gene052255 | MS.gene43782 | 0.831222 | 1.89E-55 | -1.69E-46 |
| MS.gene052310 | MS.gene43782 | 0.8797 | 1.01E-69 | -1.69E-46 |
| MS.gene052322 | MS.gene43782 | 0.802902 | 4.50E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene43782 | 0.927242 | 1.54E-91 | -1.69E-46 |
| MS.gene052414 | MS.gene43782 | 0.82266 | 2.10E-53 | -1.69E-46 |
| MS.gene052421 | MS.gene43782 | 0.806876 | 6.65E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene43782 | 0.834253 | 3.33E-56 | -1.69E-46 |
| MS.gene052484 | MS.gene43782 | 0.817237 | 3.66E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene43782 | 0.876801 | 1.05E-68 | -1.69E-46 |
| MS.gene052784 | MS.gene43782 | 0.81142 | 7.06E-51 | -1.69E-46 |
| MS.gene053073 | MS.gene43782 | 0.849722 | 2.69E-60 | -1.69E-46 |
| MS.gene053103 | MS.gene43782 | 0.837858 | 4.05E-57 | -1.69E-46 |
| MS.gene05316 | MS.gene43782 | 0.868823 | 4.90E-66 | -1.69E-46 |
| MS.gene053209 | MS.gene43782 | 0.87544 | 3.08E-68 | -1.69E-46 |
| MS.gene053449 | MS.gene43782 | 0.828008 | 1.14E-54 | -1.69E-46 |
| MS.gene053494 | MS.gene43782 | 0.836725 | 7.91E-57 | -1.69E-46 |
| MS.gene053557 | MS.gene43782 | 0.874046 | 9.17E-68 | -1.69E-46 |
| MS.gene053559 | MS.gene43782 | 0.844393 | 7.78E-59 | -1.69E-46 |
| MS.gene053577 | MS.gene43782 | 0.827367 | 1.63E-54 | -1.69E-46 |
| MS.gene053758 | MS.gene43782 | 0.830533 | 2.78E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene43782 | 0.896779 | 2.66E-76 | -1.69E-46 |
| MS.gene053912 | MS.gene43782 | 0.827442 | 1.56E-54 | -1.69E-46 |
| MS.gene053928 | MS.gene43782 | 0.844745 | 6.25E-59 | -1.69E-46 |
| MS.gene054123 | MS.gene43782 | 0.859169 | 4.98E-63 | -1.69E-46 |
| MS.gene054183 | MS.gene43782 | 0.8366 | 8.51E-57 | -1.69E-46 |
| MS.gene054349 | MS.gene43782 | 0.874765 | 5.23E-68 | -1.69E-46 |
| MS.gene054473 | MS.gene43782 | 0.841014 | 6.14E-58 | -1.69E-46 |
| MS.gene054542 | MS.gene43782 | 0.838294 | 3.13E-57 | -1.69E-46 |
| MS.gene054556 | MS.gene43782 | 0.837819 | 4.15E-57 | -1.69E-46 |
| MS.gene054719 | MS.gene43782 | 0.814562 | 1.45E-51 | -1.69E-46 |
| MS.gene054918 | MS.gene43782 | 0.818506 | 1.89E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene43782 | 0.886557 | 3.08E-72 | -1.69E-46 |
| MS.gene054955 | MS.gene43782 | 0.824007 | 1.02E-53 | -1.69E-46 |
| MS.gene054983 | MS.gene43782 | 0.829353 | 5.40E-55 | -1.69E-46 |
| MS.gene055116 | MS.gene43782 | 0.918203 | 2.08E-86 | -1.69E-46 |
| MS.gene055277 | MS.gene43782 | 0.842772 | 2.11E-58 | -1.69E-46 |
| MS.gene055369 | MS.gene43782 | 0.802352 | 5.84E-49 | -1.69E-46 |
| MS.gene055390 | MS.gene43782 | 0.818786 | 1.63E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene43782 | 0.867954 | 9.35E-66 | -1.69E-46 |
| MS.gene055428 | MS.gene43782 | 0.848933 | 4.47E-60 | -1.69E-46 |
| MS.gene055539 | MS.gene43782 | 0.811582 | 6.52E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene43782 | 0.876986 | 9.03E-69 | -1.69E-46 |
| MS.gene055604 | MS.gene43782 | 0.827246 | 1.74E-54 | -1.69E-46 |
| MS.gene055666 | MS.gene43782 | 0.833899 | 4.09E-56 | -1.69E-46 |
| MS.gene055712 | MS.gene43782 | 0.812065 | 5.11E-51 | -1.69E-46 |
| MS.gene055859 | MS.gene43782 | 0.858328 | 8.88E-63 | -1.69E-46 |
| MS.gene056191 | MS.gene43782 | 0.834286 | 3.27E-56 | -1.69E-46 |
| MS.gene056233 | MS.gene43782 | 0.802987 | 4.32E-49 | -1.69E-46 |
| MS.gene056314 | MS.gene43782 | 0.801861 | 7.37E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene43782 | 0.880324 | 6.03E-70 | -1.69E-46 |
| MS.gene056410 | MS.gene43782 | 0.809063 | 2.28E-50 | -1.69E-46 |
| MS.gene056447 | MS.gene43782 | 0.815092 | 1.10E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene43782 | 0.869266 | 3.52E-66 | -1.69E-46 |
| MS.gene056609 | MS.gene43782 | 0.840777 | 7.09E-58 | -1.69E-46 |
| MS.gene056612 | MS.gene43782 | 0.845994 | 2.87E-59 | -1.69E-46 |
| MS.gene056659 | MS.gene43782 | 0.888198 | 7.30E-73 | -1.69E-46 |
| MS.gene056719 | MS.gene43782 | 0.839152 | 1.88E-57 | -1.69E-46 |
| MS.gene056723 | MS.gene43782 | 0.844494 | 7.30E-59 | -1.69E-46 |
| MS.gene056899 | MS.gene43782 | -0.827015 | 1.98E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene43782 | 0.853416 | 2.43E-61 | -1.69E-46 |
| MS.gene05702 | MS.gene43782 | 0.883055 | 6.20E-71 | -1.69E-46 |
| MS.gene057121 | MS.gene43782 | 0.817982 | 2.49E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene43782 | 0.849524 | 3.06E-60 | -1.69E-46 |
| MS.gene05733 | MS.gene43782 | 0.806421 | 8.29E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene43782 | 0.869662 | 2.62E-66 | -1.69E-46 |
| MS.gene057448 | MS.gene43782 | 0.911101 | 8.90E-83 | -1.69E-46 |
| MS.gene057449 | MS.gene43782 | 0.891582 | 3.48E-74 | -1.69E-46 |
| MS.gene057450 | MS.gene43782 | 0.912335 | 2.19E-83 | -1.69E-46 |
| MS.gene057469 | MS.gene43782 | 0.829634 | 4.61E-55 | -1.69E-46 |
| MS.gene057537 | MS.gene43782 | 0.821512 | 3.88E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene43782 | 0.87411 | 8.73E-68 | -1.69E-46 |
| MS.gene057750 | MS.gene43782 | 0.827039 | 1.95E-54 | -1.69E-46 |
| MS.gene057754 | MS.gene43782 | 0.827635 | 1.40E-54 | -1.69E-46 |
| MS.gene057782 | MS.gene43782 | 0.803842 | 2.87E-49 | -1.69E-46 |
| MS.gene057796 | MS.gene43782 | 0.829689 | 4.47E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene43782 | 0.867947 | 9.40E-66 | -1.69E-46 |
| MS.gene057825 | MS.gene43782 | 0.831063 | 2.06E-55 | -1.69E-46 |
| MS.gene057927 | MS.gene43782 | 0.817327 | 3.49E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene43782 | 0.903738 | 2.54E-79 | -1.69E-46 |
| MS.gene058007 | MS.gene43782 | 0.861616 | 9.05E-64 | -1.69E-46 |
| MS.gene058082 | MS.gene43782 | 0.861325 | 1.11E-63 | -1.69E-46 |
| MS.gene05811 | MS.gene43782 | 0.885509 | 7.65E-72 | -1.69E-46 |
| MS.gene058142 | MS.gene43782 | 0.874798 | 5.09E-68 | -1.69E-46 |
| MS.gene058233 | MS.gene43782 | 0.804333 | 2.27E-49 | -1.69E-46 |
| MS.gene058276 | MS.gene43782 | 0.828446 | 8.95E-55 | -1.69E-46 |
| MS.gene058293 | MS.gene43782 | 0.832756 | 7.88E-56 | -1.69E-46 |
| MS.gene058365 | MS.gene43782 | 0.855472 | 6.17E-62 | -1.69E-46 |
| MS.gene05842 | MS.gene43782 | 0.807144 | 5.83E-50 | -1.69E-46 |
| MS.gene058433 | MS.gene43782 | 0.813063 | 3.09E-51 | -1.69E-46 |
| MS.gene058444 | MS.gene43782 | 0.800661 | 1.30E-48 | -1.69E-46 |
| MS.gene058660 | MS.gene43782 | 0.853015 | 3.16E-61 | -1.69E-46 |
| MS.gene058700 | MS.gene43782 | 0.831323 | 1.78E-55 | -1.69E-46 |
| MS.gene058710 | MS.gene43782 | 0.86333 | 2.69E-64 | -1.69E-46 |
| MS.gene058749 | MS.gene43782 | 0.830576 | 2.72E-55 | -1.69E-46 |
| MS.gene058787 | MS.gene43782 | 0.825195 | 5.35E-54 | -1.69E-46 |
| MS.gene058845 | MS.gene43782 | 0.838148 | 3.42E-57 | -1.69E-46 |
| MS.gene05886 | MS.gene43782 | 0.859464 | 4.06E-63 | -1.69E-46 |
| MS.gene058928 | MS.gene43782 | 0.881994 | 1.51E-70 | -1.69E-46 |
| MS.gene058948 | MS.gene43782 | 0.810357 | 1.20E-50 | -1.69E-46 |
| MS.gene058949 | MS.gene43782 | 0.86337 | 2.61E-64 | -1.69E-46 |
| MS.gene059011 | MS.gene43782 | 0.824565 | 7.53E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene43782 | 0.894626 | 2.07E-75 | -1.69E-46 |
| MS.gene059082 | MS.gene43782 | 0.805175 | 1.52E-49 | -1.69E-46 |
| MS.gene059141 | MS.gene43782 | 0.829082 | 6.28E-55 | -1.69E-46 |
| MS.gene059285 | MS.gene43782 | 0.920469 | 1.23E-87 | -1.69E-46 |
| MS.gene059294 | MS.gene43782 | 0.827091 | 1.89E-54 | -1.69E-46 |
| MS.gene059342 | MS.gene43782 | 0.822128 | 2.80E-53 | -1.69E-46 |
| MS.gene059366 | MS.gene43782 | 0.887046 | 2.01E-72 | -1.69E-46 |
| MS.gene059420 | MS.gene43782 | 0.874839 | 4.93E-68 | -1.69E-46 |
| MS.gene059462 | MS.gene43782 | 0.826162 | 3.16E-54 | -1.69E-46 |
| MS.gene059518 | MS.gene43782 | 0.836579 | 8.62E-57 | -1.69E-46 |
| MS.gene059597 | MS.gene43782 | 0.893374 | 6.67E-75 | -1.69E-46 |
| MS.gene05959 | MS.gene43782 | 0.825325 | 4.99E-54 | -1.69E-46 |
| MS.gene059674 | MS.gene43782 | 0.818704 | 1.71E-52 | -1.69E-46 |
| MS.gene059676 | MS.gene43782 | 0.876635 | 1.19E-68 | -1.69E-46 |
| MS.gene059688 | MS.gene43782 | 0.912253 | 2.41E-83 | -1.69E-46 |
| MS.gene059692 | MS.gene43782 | 0.9112 | 7.96E-83 | -1.69E-46 |
| MS.gene059695 | MS.gene43782 | 0.908467 | 1.66E-81 | -1.69E-46 |
| MS.gene059708 | MS.gene43782 | 0.826845 | 2.17E-54 | -1.69E-46 |
| MS.gene059711 | MS.gene43782 | 0.826612 | 2.47E-54 | -1.69E-46 |
| MS.gene059788 | MS.gene43782 | 0.830299 | 3.17E-55 | -1.69E-46 |
| MS.gene059807 | MS.gene43782 | 0.875276 | 3.50E-68 | -1.69E-46 |
| MS.gene05984 | MS.gene43782 | 0.893262 | 7.40E-75 | -1.69E-46 |
| MS.gene059876 | MS.gene43782 | 0.826386 | 2.79E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene43782 | 0.888079 | 8.11E-73 | -1.69E-46 |
| MS.gene059899 | MS.gene43782 | 0.858281 | 9.17E-63 | -1.69E-46 |
| MS.gene060247 | MS.gene43782 | 0.856941 | 2.29E-62 | -1.69E-46 |
| MS.gene06037 | MS.gene43782 | 0.850128 | 2.07E-60 | -1.69E-46 |
| MS.gene060403 | MS.gene43782 | 0.863613 | 2.20E-64 | -1.69E-46 |
| MS.gene060407 | MS.gene43782 | 0.849524 | 3.06E-60 | -1.69E-46 |
| MS.gene060495 | MS.gene43782 | 0.874427 | 6.81E-68 | -1.69E-46 |
| MS.gene060569 | MS.gene43782 | 0.804547 | 2.05E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene43782 | 0.81487 | 1.24E-51 | -1.69E-46 |
| MS.gene060818 | MS.gene43782 | 0.804232 | 2.38E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene43782 | 0.843069 | 1.76E-58 | -1.69E-46 |
| MS.gene060940 | MS.gene43782 | 0.800303 | 1.54E-48 | -1.69E-46 |
| MS.gene060943 | MS.gene43782 | 0.804142 | 2.49E-49 | -1.69E-46 |
| MS.gene060986 | MS.gene43782 | 0.836669 | 8.17E-57 | -1.69E-46 |
| MS.gene061002 | MS.gene43782 | 0.815259 | 1.01E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene43782 | 0.806009 | 1.01E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene43782 | 0.911767 | 4.19E-83 | -1.69E-46 |
| MS.gene061051 | MS.gene43782 | -0.885754 | 6.19E-72 | -1.69E-46 |
| MS.gene061154 | MS.gene43782 | 0.861433 | 1.03E-63 | -1.69E-46 |
| MS.gene061159 | MS.gene43782 | 0.880246 | 6.43E-70 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43782.t1 | MTR_5g069990 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 8.45e-72 | 209 |
| MS.gene43782.t1 | MTR_3g462990 | 56.250 | 96 | 26 | 5 | 1 | 94 | 1 | 82 | 1.39e-22 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43782.t1 | AT3G47070 | 50.000 | 64 | 29 | 2 | 1 | 64 | 1 | 61 | 1.02e-13 | 62.0 |
Find 25 sgRNAs with CRISPR-Local
Find 33 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGAAGAAGGGTGGTTT+TGG | 0.266622 | 5.1:-54434466 | MS.gene43782:CDS |
| CTTCCTGTTGTTGGAACCAT+TGG | 0.379541 | 5.1:+54434721 | None:intergenic |
| GCAAAGACTCTTCCTGTTGT+TGG | 0.385540 | 5.1:+54434712 | None:intergenic |
| TCTTCAACCTTCTTGAGAAT+AGG | 0.417605 | 5.1:+54434577 | None:intergenic |
| TTGCCAATGGTTCCAACAAC+AGG | 0.422646 | 5.1:-54434724 | MS.gene43782:CDS |
| GGAAGAGTCTTTGCAGCTAC+AGG | 0.461997 | 5.1:-54434703 | MS.gene43782:CDS |
| TTCTATCACCATGTTGCCAA+TGG | 0.469167 | 5.1:-54434737 | MS.gene43782:CDS |
| GGCAGTAGCAAGCAAGAGAA+AGG | 0.509106 | 5.1:-54434658 | MS.gene43782:CDS |
| AGAGGTACTACTAGTGGTAA+AGG | 0.534650 | 5.1:-54434526 | MS.gene43782:CDS |
| GGTAGTTCCACAAAAGAAGA+AGG | 0.536969 | 5.1:-54434476 | MS.gene43782:CDS |
| ACAGGTGCAAAGGGTACTAC+AGG | 0.544200 | 5.1:-54434685 | MS.gene43782:CDS |
| AACTGATCCTATTCTCAAGA+AGG | 0.548104 | 5.1:-54434584 | MS.gene43782:CDS |
| CTTTGCAGCTACAGGTGCAA+AGG | 0.552868 | 5.1:-54434695 | MS.gene43782:CDS |
| TTTGCAGCTACAGGTGCAAA+GGG | 0.555050 | 5.1:-54434694 | MS.gene43782:CDS |
| GCAAAGGGTACTACAGGTGG+TGG | 0.567835 | 5.1:-54434679 | MS.gene43782:CDS |
| GAAGAGAAGAATAATAGTAG+AGG | 0.604921 | 5.1:-54434559 | MS.gene43782:CDS |
| TGTTGGAACCATTGGCAACA+TGG | 0.606092 | 5.1:+54434729 | None:intergenic |
| AGTGGTAAAGGCACTACTAG+TGG | 0.623495 | 5.1:-54434514 | MS.gene43782:CDS |
| AGTAGAGGCACTACTAGTAG+AGG | 0.624915 | 5.1:-54434544 | MS.gene43782:CDS |
| GTTCCACAAAAGAAGAAGGG+TGG | 0.647995 | 5.1:-54434472 | MS.gene43782:CDS |
| GGTAAAGGCACTACTAGTGG+TGG | 0.650081 | 5.1:-54434511 | MS.gene43782:CDS |
| ACTAGTAGAGGTACTACTAG+TGG | 0.652621 | 5.1:-54434532 | MS.gene43782:CDS |
| GTAGTTCCACAAAAGAAGAA+GGG | 0.659042 | 5.1:-54434475 | MS.gene43782:CDS |
| GGTGCAAAGGGTACTACAGG+TGG | 0.681783 | 5.1:-54434682 | MS.gene43782:CDS |
| TAGTGGTGGCAAGAACTCTG+TGG | 0.685628 | 5.1:-54434497 | MS.gene43782:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGGAGGATTTTTTAACA+AGG | - | chr5.1:54434737-54434756 | MS.gene43782:CDS | 25.0% |
| GAAGAGAAGAATAATAGTAG+AGG | - | chr5.1:54434627-54434646 | MS.gene43782:CDS | 30.0% | |
| AACTGATCCTATTCTCAAGA+AGG | - | chr5.1:54434602-54434621 | MS.gene43782:CDS | 35.0% | |
| GTAGTTCCACAAAAGAAGAA+GGG | - | chr5.1:54434711-54434730 | MS.gene43782:CDS | 35.0% | |
| TCTTCAACCTTCTTGAGAAT+AGG | + | chr5.1:54434612-54434631 | None:intergenic | 35.0% | |
| ! | CAAGCAAGAGAAAGGTTTTT+GGG | - | chr5.1:54434536-54434555 | MS.gene43782:CDS | 35.0% |
| !!! | AAGAGAAAGGTTTTTGGGAT+TGG | - | chr5.1:54434541-54434560 | MS.gene43782:CDS | 35.0% |
| GGTAGTTCCACAAAAGAAGA+AGG | - | chr5.1:54434710-54434729 | MS.gene43782:CDS | 40.0% | |
| TTCTATCACCATGTTGCCAA+TGG | - | chr5.1:54434449-54434468 | MS.gene43782:CDS | 40.0% | |
| ! | AAACCACCCTTCTTCTTTTG+TGG | + | chr5.1:54434720-54434739 | None:intergenic | 40.0% |
| ! | CAAAAGAAGAAGGGTGGTTT+TGG | - | chr5.1:54434720-54434739 | MS.gene43782:CDS | 40.0% |
| ! | GCAAGCAAGAGAAAGGTTTT+TGG | - | chr5.1:54434535-54434554 | MS.gene43782:CDS | 40.0% |
| !! | ACTAGTAGAGGTACTACTAG+TGG | - | chr5.1:54434654-54434673 | MS.gene43782:CDS | 40.0% |
| !! | AGAGGTACTACTAGTGGTAA+AGG | - | chr5.1:54434660-54434679 | MS.gene43782:CDS | 40.0% |
| !!! | GGTTTTTGGGATTGGATTGT+TGG | - | chr5.1:54434549-54434568 | MS.gene43782:CDS | 40.0% |
| !!! | TTTTGGGATTGGATTGTTGG+TGG | - | chr5.1:54434552-54434571 | MS.gene43782:CDS | 40.0% |
| CTTCCTGTTGTTGGAACCAT+TGG | + | chr5.1:54434468-54434487 | None:intergenic | 45.0% | |
| GCAAAGACTCTTCCTGTTGT+TGG | + | chr5.1:54434477-54434496 | None:intergenic | 45.0% | |
| GTTCCACAAAAGAAGAAGGG+TGG | - | chr5.1:54434714-54434733 | MS.gene43782:CDS | 45.0% | |
| TGTTGGAACCATTGGCAACA+TGG | + | chr5.1:54434460-54434479 | None:intergenic | 45.0% | |
| TTGCCAATGGTTCCAACAAC+AGG | - | chr5.1:54434462-54434481 | MS.gene43782:CDS | 45.0% | |
| TTTGCAGCTACAGGTGCAAA+GGG | - | chr5.1:54434492-54434511 | MS.gene43782:CDS | 45.0% | |
| !! | AGTAGAGGCACTACTAGTAG+AGG | - | chr5.1:54434642-54434661 | MS.gene43782:CDS | 45.0% |
| !! | AGTGGTAAAGGCACTACTAG+TGG | - | chr5.1:54434672-54434691 | MS.gene43782:CDS | 45.0% |
| !!! | AAGAAGAAGGGTGGTTTTGG+AGG | - | chr5.1:54434723-54434742 | MS.gene43782:CDS | 45.0% |
| CTTTGCAGCTACAGGTGCAA+AGG | - | chr5.1:54434491-54434510 | MS.gene43782:CDS | 50.0% | |
| GGAAGAGTCTTTGCAGCTAC+AGG | - | chr5.1:54434483-54434502 | MS.gene43782:CDS | 50.0% | |
| GGCAGTAGCAAGCAAGAGAA+AGG | - | chr5.1:54434528-54434547 | MS.gene43782:CDS | 50.0% | |
| TAGTGGTGGCAAGAACTCTG+TGG | - | chr5.1:54434689-54434708 | MS.gene43782:CDS | 50.0% | |
| !! | ACAGGTGCAAAGGGTACTAC+AGG | - | chr5.1:54434501-54434520 | MS.gene43782:CDS | 50.0% |
| !! | GGTAAAGGCACTACTAGTGG+TGG | - | chr5.1:54434675-54434694 | MS.gene43782:CDS | 50.0% |
| !! | GCAAAGGGTACTACAGGTGG+TGG | - | chr5.1:54434507-54434526 | MS.gene43782:CDS | 55.0% |
| !! | GGTGCAAAGGGTACTACAGG+TGG | - | chr5.1:54434504-54434523 | MS.gene43782:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 54434444 | 54434764 | 54434444 | ID=MS.gene43782 |
| chr5.1 | mRNA | 54434444 | 54434764 | 54434444 | ID=MS.gene43782.t1;Parent=MS.gene43782 |
| chr5.1 | exon | 54434444 | 54434764 | 54434444 | ID=MS.gene43782.t1.exon1;Parent=MS.gene43782.t1 |
| chr5.1 | CDS | 54434444 | 54434764 | 54434444 | ID=cds.MS.gene43782.t1;Parent=MS.gene43782.t1 |
| Gene Sequence |
| Protein sequence |
