Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33248.t1 | KEH17045.1 | 91.5 | 118 | 9 | 1 | 1 | 118 | 57 | 173 | 5.20E-53 | 216.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33248.t1 | Q9FLI7 | 75.6 | 82 | 18 | 1 | 37 | 118 | 28 | 107 | 3.7e-31 | 135.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33248.t1 | A0A072TU10 | 91.5 | 118 | 9 | 1 | 1 | 118 | 57 | 173 | 3.7e-53 | 216.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene33248 | 0.820496 | 6.65E-53 | -1.69E-46 |
| MS.gene049151 | MS.gene33248 | 0.854759 | 9.94E-62 | -1.69E-46 |
| MS.gene049153 | MS.gene33248 | 0.825822 | 3.80E-54 | -1.69E-46 |
| MS.gene049346 | MS.gene33248 | 0.840384 | 8.98E-58 | -1.69E-46 |
| MS.gene049491 | MS.gene33248 | 0.813033 | 3.14E-51 | -1.69E-46 |
| MS.gene049599 | MS.gene33248 | -0.842646 | 2.28E-58 | -1.69E-46 |
| MS.gene049661 | MS.gene33248 | 0.811257 | 7.66E-51 | -1.69E-46 |
| MS.gene049662 | MS.gene33248 | 0.818426 | 1.97E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene33248 | 0.908823 | 1.12E-81 | -1.69E-46 |
| MS.gene049910 | MS.gene33248 | 0.837729 | 4.38E-57 | -1.69E-46 |
| MS.gene049915 | MS.gene33248 | 0.853706 | 2.00E-61 | -1.69E-46 |
| MS.gene050128 | MS.gene33248 | 0.874834 | 4.95E-68 | -1.69E-46 |
| MS.gene050226 | MS.gene33248 | 0.813583 | 2.38E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene33248 | 0.862218 | 5.92E-64 | -1.69E-46 |
| MS.gene050397 | MS.gene33248 | 0.824928 | 6.19E-54 | -1.69E-46 |
| MS.gene050406 | MS.gene33248 | 0.807416 | 5.11E-50 | -1.69E-46 |
| MS.gene050464 | MS.gene33248 | 0.804832 | 1.79E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene33248 | 0.822596 | 2.18E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene33248 | -0.820004 | 8.62E-53 | -1.69E-46 |
| MS.gene050642 | MS.gene33248 | 0.833462 | 5.26E-56 | -1.69E-46 |
| MS.gene050762 | MS.gene33248 | 0.814206 | 1.73E-51 | -1.69E-46 |
| MS.gene050763 | MS.gene33248 | 0.81691 | 4.33E-52 | -1.69E-46 |
| MS.gene05101 | MS.gene33248 | 0.804459 | 2.14E-49 | -1.69E-46 |
| MS.gene05119 | MS.gene33248 | -0.82244 | 2.37E-53 | -1.69E-46 |
| MS.gene051471 | MS.gene33248 | 0.840312 | 9.38E-58 | -1.69E-46 |
| MS.gene051535 | MS.gene33248 | 0.833812 | 4.30E-56 | -1.69E-46 |
| MS.gene051662 | MS.gene33248 | 0.83473 | 2.53E-56 | -1.69E-46 |
| MS.gene051663 | MS.gene33248 | 0.854163 | 1.48E-61 | -1.69E-46 |
| MS.gene051860 | MS.gene33248 | 0.8461 | 2.68E-59 | -1.69E-46 |
| MS.gene051983 | MS.gene33248 | 0.82345 | 1.38E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene33248 | 0.838046 | 3.63E-57 | -1.69E-46 |
| MS.gene052078 | MS.gene33248 | 0.829011 | 6.53E-55 | -1.69E-46 |
| MS.gene052178 | MS.gene33248 | 0.862447 | 5.04E-64 | -1.69E-46 |
| MS.gene052188 | MS.gene33248 | 0.845441 | 4.05E-59 | -1.69E-46 |
| MS.gene052253 | MS.gene33248 | 0.826576 | 2.51E-54 | -1.69E-46 |
| MS.gene052255 | MS.gene33248 | 0.801357 | 9.35E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene33248 | 0.827431 | 1.57E-54 | -1.69E-46 |
| MS.gene052340 | MS.gene33248 | 0.871269 | 7.77E-67 | -1.69E-46 |
| MS.gene053073 | MS.gene33248 | 0.844451 | 7.50E-59 | -1.69E-46 |
| MS.gene053074 | MS.gene33248 | 0.800017 | 1.76E-48 | -1.69E-46 |
| MS.gene05316 | MS.gene33248 | 0.846911 | 1.61E-59 | -1.69E-46 |
| MS.gene053181 | MS.gene33248 | 0.809944 | 1.47E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene33248 | 0.809767 | 1.61E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene33248 | 0.862458 | 4.99E-64 | -1.69E-46 |
| MS.gene053559 | MS.gene33248 | 0.85314 | 2.91E-61 | -1.69E-46 |
| MS.gene053836 | MS.gene33248 | 0.888951 | 3.74E-73 | -1.69E-46 |
| MS.gene053907 | MS.gene33248 | 0.807168 | 5.77E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene33248 | 0.811352 | 7.31E-51 | -1.69E-46 |
| MS.gene054184 | MS.gene33248 | 0.84497 | 5.44E-59 | -1.69E-46 |
| MS.gene054185 | MS.gene33248 | 0.843929 | 1.04E-58 | -1.69E-46 |
| MS.gene054214 | MS.gene33248 | 0.805342 | 1.40E-49 | -1.69E-46 |
| MS.gene054349 | MS.gene33248 | 0.813831 | 2.10E-51 | -1.69E-46 |
| MS.gene054379 | MS.gene33248 | 0.829127 | 6.13E-55 | -1.69E-46 |
| MS.gene054473 | MS.gene33248 | 0.81925 | 1.28E-52 | -1.69E-46 |
| MS.gene054542 | MS.gene33248 | 0.83524 | 1.88E-56 | -1.69E-46 |
| MS.gene054667 | MS.gene33248 | 0.817828 | 2.69E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene33248 | 0.849702 | 2.73E-60 | -1.69E-46 |
| MS.gene054983 | MS.gene33248 | 0.826993 | 2.00E-54 | -1.69E-46 |
| MS.gene055116 | MS.gene33248 | 0.811632 | 6.35E-51 | -1.69E-46 |
| MS.gene055133 | MS.gene33248 | 0.840795 | 7.01E-58 | -1.69E-46 |
| MS.gene055277 | MS.gene33248 | 0.857213 | 1.90E-62 | -1.69E-46 |
| MS.gene055390 | MS.gene33248 | 0.823599 | 1.27E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene33248 | 0.868731 | 5.25E-66 | -1.69E-46 |
| MS.gene055428 | MS.gene33248 | 0.828489 | 8.74E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene33248 | 0.805139 | 1.54E-49 | -1.69E-46 |
| MS.gene056314 | MS.gene33248 | 0.817868 | 2.64E-52 | -1.69E-46 |
| MS.gene056609 | MS.gene33248 | 0.813223 | 2.85E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene33248 | 0.858204 | 9.67E-63 | -1.69E-46 |
| MS.gene056659 | MS.gene33248 | 0.808448 | 3.08E-50 | -1.69E-46 |
| MS.gene056772 | MS.gene33248 | 0.813379 | 2.64E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene33248 | 0.8233 | 1.49E-53 | -1.69E-46 |
| MS.gene05702 | MS.gene33248 | 0.845295 | 4.44E-59 | -1.69E-46 |
| MS.gene057121 | MS.gene33248 | 0.825805 | 3.84E-54 | -1.69E-46 |
| MS.gene057260 | MS.gene33248 | 0.821712 | 3.49E-53 | -1.69E-46 |
| MS.gene05733 | MS.gene33248 | 0.814298 | 1.65E-51 | -1.69E-46 |
| MS.gene057396 | MS.gene33248 | 0.817549 | 3.11E-52 | -1.69E-46 |
| MS.gene057439 | MS.gene33248 | 0.804645 | 1.96E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene33248 | 0.846426 | 2.19E-59 | -1.69E-46 |
| MS.gene057449 | MS.gene33248 | 0.847036 | 1.49E-59 | -1.69E-46 |
| MS.gene057450 | MS.gene33248 | 0.852953 | 3.29E-61 | -1.69E-46 |
| MS.gene057750 | MS.gene33248 | 0.811991 | 5.31E-51 | -1.69E-46 |
| MS.gene057754 | MS.gene33248 | 0.862085 | 6.50E-64 | -1.69E-46 |
| MS.gene057782 | MS.gene33248 | 0.826926 | 2.08E-54 | -1.69E-46 |
| MS.gene057794 | MS.gene33248 | 0.855413 | 6.42E-62 | -1.69E-46 |
| MS.gene057796 | MS.gene33248 | 0.840089 | 1.07E-57 | -1.69E-46 |
| MS.gene058002 | MS.gene33248 | 0.866498 | 2.73E-65 | -1.69E-46 |
| MS.gene05811 | MS.gene33248 | 0.859106 | 5.20E-63 | -1.69E-46 |
| MS.gene058142 | MS.gene33248 | 0.812196 | 4.79E-51 | -1.69E-46 |
| MS.gene058236 | MS.gene33248 | 0.8041 | 2.54E-49 | -1.69E-46 |
| MS.gene058365 | MS.gene33248 | 0.801958 | 7.04E-49 | -1.69E-46 |
| MS.gene058433 | MS.gene33248 | 0.817539 | 3.13E-52 | -1.69E-46 |
| MS.gene058435 | MS.gene33248 | 0.811767 | 5.94E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene33248 | 0.823438 | 1.38E-53 | -1.69E-46 |
| MS.gene058710 | MS.gene33248 | 0.811781 | 5.90E-51 | -1.69E-46 |
| MS.gene058749 | MS.gene33248 | 0.841183 | 5.54E-58 | -1.69E-46 |
| MS.gene058845 | MS.gene33248 | 0.840947 | 6.40E-58 | -1.69E-46 |
| MS.gene058928 | MS.gene33248 | 0.825352 | 4.91E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene33248 | 0.857595 | 1.47E-62 | -1.69E-46 |
| MS.gene059124 | MS.gene33248 | 0.806573 | 7.70E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene33248 | 0.844546 | 7.07E-59 | -1.69E-46 |
| MS.gene059294 | MS.gene33248 | 0.815863 | 7.43E-52 | -1.69E-46 |
| MS.gene059421 | MS.gene33248 | 0.817986 | 2.48E-52 | -1.69E-46 |
| MS.gene059518 | MS.gene33248 | 0.845025 | 5.25E-59 | -1.69E-46 |
| MS.gene059597 | MS.gene33248 | 0.848258 | 6.87E-60 | -1.69E-46 |
| MS.gene059688 | MS.gene33248 | 0.817682 | 2.91E-52 | -1.69E-46 |
| MS.gene059692 | MS.gene33248 | 0.841588 | 4.34E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene33248 | 0.832905 | 7.24E-56 | -1.69E-46 |
| MS.gene059708 | MS.gene33248 | 0.812574 | 3.96E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene33248 | 0.883876 | 3.10E-71 | -1.69E-46 |
| MS.gene059894 | MS.gene33248 | 0.891809 | 2.83E-74 | -1.69E-46 |
| MS.gene059899 | MS.gene33248 | 0.836986 | 6.79E-57 | -1.69E-46 |
| MS.gene060084 | MS.gene33248 | 0.83215 | 1.11E-55 | -1.69E-46 |
| MS.gene06037 | MS.gene33248 | 0.851509 | 8.47E-61 | -1.69E-46 |
| MS.gene060476 | MS.gene33248 | 0.865135 | 7.35E-65 | -1.69E-46 |
| MS.gene060495 | MS.gene33248 | 0.855585 | 5.71E-62 | -1.69E-46 |
| MS.gene061049 | MS.gene33248 | 0.895519 | 8.87E-76 | -1.69E-46 |
| MS.gene061051 | MS.gene33248 | -0.846733 | 1.80E-59 | -1.69E-46 |
| MS.gene061112 | MS.gene33248 | 0.816881 | 4.40E-52 | -1.69E-46 |
| MS.gene061113 | MS.gene33248 | 0.816354 | 5.77E-52 | -1.69E-46 |
| MS.gene061265 | MS.gene33248 | 0.821017 | 5.05E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33248.t1 | MTR_0050s0180 | 91.525 | 118 | 9 | 1 | 1 | 118 | 57 | 173 | 1.53e-73 | 216 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33248.t1 | AT5G51720 | 75.610 | 82 | 18 | 1 | 37 | 118 | 28 | 107 | 6.02e-42 | 134 |
Find 34 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCACTCTTCCTTATATC+TGG | 0.212325 | 6.3:+59680977 | None:intergenic |
| CTGAACCATACCTGCAATAA+GGG | 0.297458 | 6.3:+59680906 | None:intergenic |
| ACTGAACCATACCTGCAATA+AGG | 0.297703 | 6.3:+59680905 | None:intergenic |
| AAAGGAACTAGTGTTGAAAT+TGG | 0.341338 | 6.3:+59681069 | None:intergenic |
| AACACTAGTTCCTTTGGTAT+TGG | 0.371065 | 6.3:-59681061 | MS.gene33248:CDS |
| AATTTCAACACTAGTTCCTT+TGG | 0.378332 | 6.3:-59681067 | MS.gene33248:CDS |
| TCTCACCTAAACGTGGCTTT+TGG | 0.382823 | 6.3:+59681113 | None:intergenic |
| TTGGTATTGGTAAGAAAGTA+AGG | 0.397456 | 6.3:-59681048 | MS.gene33248:CDS |
| TGGCTTTGTTGTGCTTTACA+TGG | 0.398604 | 6.3:+59679795 | None:intergenic |
| TATAAGGAAGAGTGAAGAAA+AGG | 0.402584 | 6.3:-59680972 | MS.gene33248:CDS |
| AGGCTGTTACCCCTTATTGC+AGG | 0.413134 | 6.3:-59680916 | MS.gene33248:intron |
| GTAGCATAAATCCAGATATA+AGG | 0.421707 | 6.3:-59680988 | MS.gene33248:CDS |
| GTGGTGGTGAAAGCAGAGGC+AGG | 0.428721 | 6.3:-59681019 | MS.gene33248:CDS |
| TTGTGCCAAAAGCCACGTTT+AGG | 0.443126 | 6.3:-59681118 | MS.gene33248:CDS |
| TGATACAGATGCTGGAGATC+AGG | 0.452783 | 6.3:-59679842 | MS.gene33248:intron |
| GGCACAAAACTACACCAACT+TGG | 0.466620 | 6.3:+59681134 | None:intergenic |
| GGTGGTGAAAGCAGAGGCAG+GGG | 0.494390 | 6.3:-59681017 | MS.gene33248:CDS |
| AAGCCACTGGAGATAATGTT+GGG | 0.514803 | 6.3:-59679778 | MS.gene33248:CDS |
| GCAATAAGGGGTAACAGCCT+TGG | 0.526502 | 6.3:+59680919 | None:intergenic |
| AAAGCCACTGGAGATAATGT+TGG | 0.533290 | 6.3:-59679779 | MS.gene33248:CDS |
| GAAAGTAAGGAGTGTGGTGG+TGG | 0.540229 | 6.3:-59681035 | MS.gene33248:CDS |
| TGGTGGTGAAAGCAGAGGCA+GGG | 0.560277 | 6.3:-59681018 | MS.gene33248:CDS |
| GGAACCTTTCCTCTGTGTGA+TGG | 0.562888 | 6.3:-59679821 | MS.gene33248:CDS |
| TACTTTCTTACCAATACCAA+AGG | 0.570043 | 6.3:+59681051 | None:intergenic |
| GTAAAGCACAACAAAGCCAC+TGG | 0.579483 | 6.3:-59679791 | MS.gene33248:CDS |
| TGTGCTAAGTGAAGTGTCCA+AGG | 0.598167 | 6.3:-59680936 | MS.gene33248:CDS |
| GCTTCCATCACACAGAGGAA+AGG | 0.616730 | 6.3:+59679817 | None:intergenic |
| AGGCCCAACATTATCTCCAG+TGG | 0.629442 | 6.3:+59679775 | None:intergenic |
| TGGTAAGAAAGTAAGGAGTG+TGG | 0.636519 | 6.3:-59681041 | MS.gene33248:CDS |
| TGAACCATACCTGCAATAAG+GGG | 0.646965 | 6.3:+59680907 | None:intergenic |
| GTGGTGAAAGCAGAGGCAGG+GGG | 0.668326 | 6.3:-59681016 | MS.gene33248:CDS |
| TGTGGTGGTGGTGAAAGCAG+AGG | 0.723118 | 6.3:-59681023 | MS.gene33248:CDS |
| TAAGAAAGTAAGGAGTGTGG+TGG | 0.754978 | 6.3:-59681038 | MS.gene33248:CDS |
| ACATGGCTTCCATCACACAG+AGG | 0.761842 | 6.3:+59679812 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGTTTATCATTTATTTA+TGG | - | chr6.3:59680029-59680048 | MS.gene33248:intron | 10.0% |
| !! | CAATAATCAAATTTCAATAA+TGG | + | chr6.3:59680120-59680139 | None:intergenic | 15.0% |
| !! | CATTATTGAAATTTGATTAT+TGG | - | chr6.3:59680118-59680137 | MS.gene33248:intron | 15.0% |
| !! | AAAACAAATCTTAATCTTTC+TGG | - | chr6.3:59681031-59681050 | MS.gene33248:CDS | 20.0% |
| !! | ATTTAGTTGAAAACAACTTA+TGG | - | chr6.3:59680192-59680211 | MS.gene33248:intron | 20.0% |
| !! | CTAAATTCAATAAACTATCT+AGG | + | chr6.3:59680178-59680197 | None:intergenic | 20.0% |
| !! | TATCACAAATTAACAATGTT+TGG | - | chr6.3:59680521-59680540 | MS.gene33248:intron | 20.0% |
| !! | TATGCTTCTATAATATATGT+TGG | - | chr6.3:59680844-59680863 | MS.gene33248:intron | 20.0% |
| !!! | AGAAAGATTAAGATTTGTTT+TGG | + | chr6.3:59681032-59681051 | None:intergenic | 20.0% |
| !!! | TGATTATTGGTTAATTTATG+TGG | - | chr6.3:59680131-59680150 | MS.gene33248:intron | 20.0% |
| ! | CCACATAAAGAACTTATTAA+TGG | - | chr6.3:59680806-59680825 | MS.gene33248:intron | 25.0% |
| ! | CCATTAATAAGTTCTTTATG+TGG | + | chr6.3:59680809-59680828 | None:intergenic | 25.0% |
| ! | GAGAGAAAAAATGGAATTAT+AGG | - | chr6.3:59679814-59679833 | MS.gene33248:CDS | 25.0% |
| ! | TGATATTAGATGAATGATTC+TGG | - | chr6.3:59680368-59680387 | MS.gene33248:intron | 25.0% |
| !! | ATGATAATCTGGAATAATGT+CGG | - | chr6.3:59680575-59680594 | MS.gene33248:intron | 25.0% |
| !! | GCATTTTGTATATGATAATC+TGG | - | chr6.3:59680564-59680583 | MS.gene33248:intron | 25.0% |
| !!! | AATCTTAATCTTTCTGGTTT+TGG | - | chr6.3:59681037-59681056 | MS.gene33248:CDS | 25.0% |
| !!! | ATCTTAATCTTTCTGGTTTT+GGG | - | chr6.3:59681038-59681057 | MS.gene33248:CDS | 25.0% |
| AATTTCAACACTAGTTCCTT+TGG | - | chr6.3:59679841-59679860 | MS.gene33248:intron | 30.0% | |
| GAATCTCTTGTTGAGAAATT+AGG | - | chr6.3:59680618-59680637 | MS.gene33248:intron | 30.0% | |
| GCTTCTATAATATATGTTGG+TGG | - | chr6.3:59680847-59680866 | MS.gene33248:intron | 30.0% | |
| GTAGCATAAATCCAGATATA+AGG | - | chr6.3:59679920-59679939 | MS.gene33248:intron | 30.0% | |
| TACTTTCTTACCAATACCAA+AGG | + | chr6.3:59679860-59679879 | None:intergenic | 30.0% | |
| TATAAGGAAGAGTGAAGAAA+AGG | - | chr6.3:59679936-59679955 | MS.gene33248:intron | 30.0% | |
| TATGGTTAAGTGTATCATTG+TGG | - | chr6.3:59680047-59680066 | MS.gene33248:intron | 30.0% | |
| TGAGAAATTAGGATGTTGAT+AGG | - | chr6.3:59680629-59680648 | MS.gene33248:intron | 30.0% | |
| TGATTGATTACATCTGTTTC+TGG | - | chr6.3:59680446-59680465 | MS.gene33248:intron | 30.0% | |
| TTATGTGGAATCTACTAACT+GGG | + | chr6.3:59680794-59680813 | None:intergenic | 30.0% | |
| TTTATGTGGAATCTACTAAC+TGG | + | chr6.3:59680795-59680814 | None:intergenic | 30.0% | |
| ! | AAAGGAACTAGTGTTGAAAT+TGG | + | chr6.3:59679842-59679861 | None:intergenic | 30.0% |
| ! | TGATAATCTGGAATAATGTC+GGG | - | chr6.3:59680576-59680595 | MS.gene33248:intron | 30.0% |
| !! | TTGGTATTGGTAAGAAAGTA+AGG | - | chr6.3:59679860-59679879 | MS.gene33248:intron | 30.0% |
| AACACTAGTTCCTTTGGTAT+TGG | - | chr6.3:59679847-59679866 | MS.gene33248:intron | 35.0% | |
| CGTTTAGGTGAGAGAAAAAA+TGG | - | chr6.3:59679805-59679824 | MS.gene33248:CDS | 35.0% | |
| CTCTCAAATAGTTTCACAAG+TGG | - | chr6.3:59680241-59680260 | MS.gene33248:intron | 35.0% | |
| TCTTCACTCTTCCTTATATC+TGG | + | chr6.3:59679934-59679953 | None:intergenic | 35.0% | |
| TTTGTCGAATCTCTATAACG+TGG | - | chr6.3:59680751-59680770 | MS.gene33248:intron | 35.0% | |
| ! | ACATAAGCAGGATTTTTACG+TGG | + | chr6.3:59680657-59680676 | None:intergenic | 35.0% |
| ! | GATAATCTGGAATAATGTCG+GGG | - | chr6.3:59680577-59680596 | MS.gene33248:intron | 35.0% |
| !! | ATTACATCTGTTTCTGGAAG+TGG | - | chr6.3:59680452-59680471 | MS.gene33248:intron | 35.0% |
| !!! | TTTTTTCTCTCACCTAAACG+TGG | + | chr6.3:59679805-59679824 | None:intergenic | 35.0% |
| AAAGCCACTGGAGATAATGT+TGG | - | chr6.3:59681129-59681148 | MS.gene33248:CDS | 40.0% | |
| AAGCCACTGGAGATAATGTT+GGG | - | chr6.3:59681130-59681149 | MS.gene33248:CDS | 40.0% | |
| ACTGAACCATACCTGCAATA+AGG | + | chr6.3:59680006-59680025 | None:intergenic | 40.0% | |
| CTGAACCATACCTGCAATAA+GGG | + | chr6.3:59680005-59680024 | None:intergenic | 40.0% | |
| TAAAAGGAGAGGGTTGTGTT+AGG | - | chr6.3:59680707-59680726 | MS.gene33248:intron | 40.0% | |
| TAACGAGGCTTAACATAAGC+AGG | + | chr6.3:59680669-59680688 | None:intergenic | 40.0% | |
| TAAGCCTCGTTATACATTCC+CGG | - | chr6.3:59680677-59680696 | MS.gene33248:intron | 40.0% | |
| TGAACCATACCTGCAATAAG+GGG | + | chr6.3:59680004-59680023 | None:intergenic | 40.0% | |
| TGGAATCTACTAACTGGGAT+CGG | + | chr6.3:59680789-59680808 | None:intergenic | 40.0% | |
| TGGTAAGAAAGTAAGGAGTG+TGG | - | chr6.3:59679867-59679886 | MS.gene33248:intron | 40.0% | |
| ! | ACAACCCTCTCCTTTTACTT+GGG | + | chr6.3:59680704-59680723 | None:intergenic | 40.0% |
| ! | TAAGAAAGTAAGGAGTGTGG+TGG | - | chr6.3:59679870-59679889 | MS.gene33248:intron | 40.0% |
| !! | AAGTTTTACGTTGACTGTCG+AGG | + | chr6.3:59680733-59680752 | None:intergenic | 40.0% |
| !! | GCATCTGTTTTAAGCCAAGT+TGG | - | chr6.3:59679760-59679779 | MS.gene33248:CDS | 40.0% |
| !! | TGGCTTTGTTGTGCTTTACA+TGG | + | chr6.3:59681116-59681135 | None:intergenic | 40.0% |
| GGCACAAAACTACACCAACT+TGG | + | chr6.3:59679777-59679796 | None:intergenic | 45.0% | |
| GTAAAGCACAACAAAGCCAC+TGG | - | chr6.3:59681117-59681136 | MS.gene33248:CDS | 45.0% | |
| GTTACCCCTTATTGCAGGTA+TGG | - | chr6.3:59679997-59680016 | MS.gene33248:intron | 45.0% | |
| TGATACAGATGCTGGAGATC+AGG | - | chr6.3:59681066-59681085 | MS.gene33248:CDS | 45.0% | |
| TTGTGCCAAAAGCCACGTTT+AGG | - | chr6.3:59679790-59679809 | MS.gene33248:CDS | 45.0% | |
| ! | CACAACCCTCTCCTTTTACT+TGG | + | chr6.3:59680705-59680724 | None:intergenic | 45.0% |
| ! | TCTCACCTAAACGTGGCTTT+TGG | + | chr6.3:59679798-59679817 | None:intergenic | 45.0% |
| ! | TGTGCTAAGTGAAGTGTCCA+AGG | - | chr6.3:59679972-59679991 | MS.gene33248:intron | 45.0% |
| ACATGGCTTCCATCACACAG+AGG | + | chr6.3:59681099-59681118 | None:intergenic | 50.0% | |
| AGGCCCAACATTATCTCCAG+TGG | + | chr6.3:59681136-59681155 | None:intergenic | 50.0% | |
| AGGCTGTTACCCCTTATTGC+AGG | - | chr6.3:59679992-59680011 | MS.gene33248:intron | 50.0% | |
| CATTCCCGGTCCCAAGTAAA+AGG | - | chr6.3:59680691-59680710 | MS.gene33248:intron | 50.0% | |
| CGGTCCCAAGTAAAAGGAGA+GGG | - | chr6.3:59680697-59680716 | MS.gene33248:intron | 50.0% | |
| GCAATAAGGGGTAACAGCCT+TGG | + | chr6.3:59679992-59680011 | None:intergenic | 50.0% | |
| GCTTCCATCACACAGAGGAA+AGG | + | chr6.3:59681094-59681113 | None:intergenic | 50.0% | |
| GGAACCTTTCCTCTGTGTGA+TGG | - | chr6.3:59681087-59681106 | MS.gene33248:CDS | 50.0% | |
| GGGTGCTTTGATACAGATGC+TGG | - | chr6.3:59681058-59681077 | MS.gene33248:CDS | 50.0% | |
| ! | CCTCTCCTTTTACTTGGGAC+CGG | + | chr6.3:59680699-59680718 | None:intergenic | 50.0% |
| ! | CTCTCCTTTTACTTGGGACC+GGG | + | chr6.3:59680698-59680717 | None:intergenic | 50.0% |
| ! | GAAAGTAAGGAGTGTGGTGG+TGG | - | chr6.3:59679873-59679892 | MS.gene33248:intron | 50.0% |
| CCGGTCCCAAGTAAAAGGAG+AGG | - | chr6.3:59680696-59680715 | MS.gene33248:intron | 55.0% | |
| GGGACCGGGAATGTATAACG+AGG | + | chr6.3:59680684-59680703 | None:intergenic | 55.0% | |
| ! | TGGTGGTGAAAGCAGAGGCA+GGG | - | chr6.3:59679890-59679909 | MS.gene33248:intron | 55.0% |
| !! | TGTGGTGGTGGTGAAAGCAG+AGG | - | chr6.3:59679885-59679904 | MS.gene33248:intron | 55.0% |
| GGTGGTGAAAGCAGAGGCAG+GGG | - | chr6.3:59679891-59679910 | MS.gene33248:intron | 60.0% | |
| GTGGTGAAAGCAGAGGCAGG+GGG | - | chr6.3:59679892-59679911 | MS.gene33248:intron | 60.0% | |
| ! | GTGGTGGTGAAAGCAGAGGC+AGG | - | chr6.3:59679889-59679908 | MS.gene33248:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 59679757 | 59681173 | 59679757 | ID=MS.gene33248 |
| chr6.3 | mRNA | 59679757 | 59681173 | 59679757 | ID=MS.gene33248.t1;Parent=MS.gene33248 |
| chr6.3 | exon | 59680917 | 59681173 | 59680917 | ID=MS.gene33248.t1.exon1;Parent=MS.gene33248.t1 |
| chr6.3 | CDS | 59680917 | 59681173 | 59680917 | ID=cds.MS.gene33248.t1;Parent=MS.gene33248.t1 |
| chr6.3 | exon | 59679757 | 59679856 | 59679757 | ID=MS.gene33248.t1.exon2;Parent=MS.gene33248.t1 |
| chr6.3 | CDS | 59679757 | 59679856 | 59679757 | ID=cds.MS.gene33248.t1;Parent=MS.gene33248.t1 |
| Gene Sequence |
| Protein sequence |
