Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79479.t1 | XP_003601777.1 | 93 | 187 | 9 | 1 | 1 | 183 | 1 | 187 | 1.70E-90 | 342 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79479.t1 | G7JBY5 | 93.0 | 187 | 9 | 1 | 1 | 183 | 1 | 187 | 1.2e-90 | 342.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene79479 | 0.818312 | 2.09E-52 | -1.69E-46 |
| MS.gene049151 | MS.gene79479 | 0.818798 | 1.62E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene79479 | 0.817425 | 3.32E-52 | -1.69E-46 |
| MS.gene049170 | MS.gene79479 | 0.84397 | 1.01E-58 | -1.69E-46 |
| MS.gene049260 | MS.gene79479 | 0.801059 | 1.08E-48 | -1.69E-46 |
| MS.gene049284 | MS.gene79479 | 0.839929 | 1.18E-57 | -1.69E-46 |
| MS.gene049351 | MS.gene79479 | 0.804829 | 1.79E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene79479 | 0.81653 | 5.27E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene79479 | 0.80836 | 3.22E-50 | -1.69E-46 |
| MS.gene049389 | MS.gene79479 | 0.807712 | 4.42E-50 | -1.69E-46 |
| MS.gene049491 | MS.gene79479 | 0.815795 | 7.70E-52 | -1.69E-46 |
| MS.gene049599 | MS.gene79479 | -0.825798 | 3.85E-54 | -1.69E-46 |
| MS.gene049661 | MS.gene79479 | 0.807118 | 5.91E-50 | -1.69E-46 |
| MS.gene049662 | MS.gene79479 | 0.815694 | 8.11E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene79479 | 0.893151 | 8.21E-75 | -1.69E-46 |
| MS.gene049910 | MS.gene79479 | 0.828881 | 7.02E-55 | -1.69E-46 |
| MS.gene049915 | MS.gene79479 | 0.814513 | 1.48E-51 | -1.69E-46 |
| MS.gene050060 | MS.gene79479 | 0.825981 | 3.48E-54 | -1.69E-46 |
| MS.gene050076 | MS.gene79479 | 0.806685 | 7.30E-50 | -1.69E-46 |
| MS.gene050099 | MS.gene79479 | 0.806049 | 9.94E-50 | -1.69E-46 |
| MS.gene050128 | MS.gene79479 | 0.888495 | 5.61E-73 | -1.69E-46 |
| MS.gene050301 | MS.gene79479 | 0.894594 | 2.13E-75 | -1.69E-46 |
| MS.gene050397 | MS.gene79479 | 0.844811 | 6.00E-59 | -1.69E-46 |
| MS.gene050404 | MS.gene79479 | 0.871534 | 6.35E-67 | -1.69E-46 |
| MS.gene050406 | MS.gene79479 | 0.872819 | 2.37E-67 | -1.69E-46 |
| MS.gene050426 | MS.gene79479 | -0.836793 | 7.60E-57 | -1.69E-46 |
| MS.gene050464 | MS.gene79479 | 0.860162 | 2.50E-63 | -1.69E-46 |
| MS.gene050529 | MS.gene79479 | 0.891646 | 3.28E-74 | -1.69E-46 |
| MS.gene050623 | MS.gene79479 | -0.832528 | 8.98E-56 | -1.69E-46 |
| MS.gene050642 | MS.gene79479 | 0.87148 | 6.62E-67 | -1.69E-46 |
| MS.gene050670 | MS.gene79479 | 0.836471 | 9.18E-57 | -1.69E-46 |
| MS.gene050812 | MS.gene79479 | 0.833096 | 6.49E-56 | -1.69E-46 |
| MS.gene050971 | MS.gene79479 | 0.836411 | 9.51E-57 | -1.69E-46 |
| MS.gene05101 | MS.gene79479 | 0.816696 | 4.84E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene79479 | 0.807214 | 5.64E-50 | -1.69E-46 |
| MS.gene05119 | MS.gene79479 | -0.812522 | 4.06E-51 | -1.69E-46 |
| MS.gene051471 | MS.gene79479 | 0.882386 | 1.09E-70 | -1.69E-46 |
| MS.gene051535 | MS.gene79479 | 0.817286 | 3.57E-52 | -1.69E-46 |
| MS.gene051582 | MS.gene79479 | 0.800653 | 1.30E-48 | -1.69E-46 |
| MS.gene051662 | MS.gene79479 | 0.813851 | 2.08E-51 | -1.69E-46 |
| MS.gene051663 | MS.gene79479 | 0.815311 | 9.87E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene79479 | 0.840529 | 8.23E-58 | -1.69E-46 |
| MS.gene051983 | MS.gene79479 | 0.877583 | 5.59E-69 | -1.69E-46 |
| MS.gene052077 | MS.gene79479 | 0.896472 | 3.57E-76 | -1.69E-46 |
| MS.gene052078 | MS.gene79479 | 0.869689 | 2.56E-66 | -1.69E-46 |
| MS.gene052178 | MS.gene79479 | 0.88815 | 7.62E-73 | -1.69E-46 |
| MS.gene052188 | MS.gene79479 | 0.919019 | 7.58E-87 | -1.69E-46 |
| MS.gene052253 | MS.gene79479 | 0.848405 | 6.26E-60 | -1.69E-46 |
| MS.gene052290 | MS.gene79479 | 0.816621 | 5.03E-52 | -1.69E-46 |
| MS.gene052310 | MS.gene79479 | 0.882517 | 9.75E-71 | -1.69E-46 |
| MS.gene052326 | MS.gene79479 | 0.809945 | 1.47E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene79479 | 0.917103 | 7.98E-86 | -1.69E-46 |
| MS.gene052469 | MS.gene79479 | 0.820138 | 8.03E-53 | -1.69E-46 |
| MS.gene053073 | MS.gene79479 | 0.881081 | 3.23E-70 | -1.69E-46 |
| MS.gene053103 | MS.gene79479 | 0.822633 | 2.13E-53 | -1.69E-46 |
| MS.gene05316 | MS.gene79479 | 0.876506 | 1.32E-68 | -1.69E-46 |
| MS.gene053209 | MS.gene79479 | 0.853039 | 3.11E-61 | -1.69E-46 |
| MS.gene053557 | MS.gene79479 | 0.915826 | 3.71E-85 | -1.69E-46 |
| MS.gene053559 | MS.gene79479 | 0.853751 | 1.94E-61 | -1.69E-46 |
| MS.gene053577 | MS.gene79479 | 0.810503 | 1.12E-50 | -1.69E-46 |
| MS.gene053758 | MS.gene79479 | 0.80434 | 2.26E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene79479 | 0.882242 | 1.23E-70 | -1.69E-46 |
| MS.gene053907 | MS.gene79479 | 0.852467 | 4.53E-61 | -1.69E-46 |
| MS.gene053928 | MS.gene79479 | 0.861682 | 8.64E-64 | -1.69E-46 |
| MS.gene053971 | MS.gene79479 | 0.809114 | 2.22E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene79479 | 0.889587 | 2.12E-73 | -1.69E-46 |
| MS.gene054327 | MS.gene79479 | 0.829281 | 5.62E-55 | -1.69E-46 |
| MS.gene054349 | MS.gene79479 | 0.868966 | 4.41E-66 | -1.69E-46 |
| MS.gene054542 | MS.gene79479 | 0.806265 | 8.94E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene79479 | 0.863914 | 1.77E-64 | -1.69E-46 |
| MS.gene054955 | MS.gene79479 | 0.830119 | 3.51E-55 | -1.69E-46 |
| MS.gene054983 | MS.gene79479 | 0.823603 | 1.27E-53 | -1.69E-46 |
| MS.gene055116 | MS.gene79479 | 0.852892 | 3.42E-61 | -1.69E-46 |
| MS.gene055277 | MS.gene79479 | 0.851831 | 6.87E-61 | -1.69E-46 |
| MS.gene055390 | MS.gene79479 | 0.812317 | 4.50E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene79479 | 0.886297 | 3.86E-72 | -1.69E-46 |
| MS.gene055428 | MS.gene79479 | 0.843581 | 1.28E-58 | -1.69E-46 |
| MS.gene055533 | MS.gene79479 | 0.801674 | 8.05E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene79479 | 0.868126 | 8.23E-66 | -1.69E-46 |
| MS.gene055604 | MS.gene79479 | 0.833116 | 6.41E-56 | -1.69E-46 |
| MS.gene055712 | MS.gene79479 | 0.80065 | 1.30E-48 | -1.69E-46 |
| MS.gene055859 | MS.gene79479 | 0.808564 | 2.91E-50 | -1.69E-46 |
| MS.gene055896 | MS.gene79479 | 0.805824 | 1.11E-49 | -1.69E-46 |
| MS.gene056233 | MS.gene79479 | 0.824772 | 6.74E-54 | -1.69E-46 |
| MS.gene056314 | MS.gene79479 | 0.844828 | 5.94E-59 | -1.69E-46 |
| MS.gene056407 | MS.gene79479 | 0.841422 | 4.80E-58 | -1.69E-46 |
| MS.gene056609 | MS.gene79479 | 0.860295 | 2.28E-63 | -1.69E-46 |
| MS.gene056612 | MS.gene79479 | 0.890554 | 8.87E-74 | -1.69E-46 |
| MS.gene056659 | MS.gene79479 | 0.889146 | 3.14E-73 | -1.69E-46 |
| MS.gene056719 | MS.gene79479 | 0.87702 | 8.78E-69 | -1.69E-46 |
| MS.gene056723 | MS.gene79479 | 0.809279 | 2.05E-50 | -1.69E-46 |
| MS.gene056796 | MS.gene79479 | 0.807795 | 4.25E-50 | -1.69E-46 |
| MS.gene056899 | MS.gene79479 | -0.827942 | 1.18E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene79479 | 0.875054 | 4.17E-68 | -1.69E-46 |
| MS.gene05702 | MS.gene79479 | 0.868865 | 4.75E-66 | -1.69E-46 |
| MS.gene057121 | MS.gene79479 | 0.824516 | 7.74E-54 | -1.69E-46 |
| MS.gene057123 | MS.gene79479 | 0.802648 | 5.08E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene79479 | 0.813424 | 2.58E-51 | -1.69E-46 |
| MS.gene057199 | MS.gene79479 | 0.816488 | 5.39E-52 | -1.69E-46 |
| MS.gene057396 | MS.gene79479 | 0.877995 | 4.02E-69 | -1.69E-46 |
| MS.gene057439 | MS.gene79479 | 0.824269 | 8.84E-54 | -1.69E-46 |
| MS.gene057448 | MS.gene79479 | 0.856342 | 3.43E-62 | -1.69E-46 |
| MS.gene057449 | MS.gene79479 | 0.845538 | 3.82E-59 | -1.69E-46 |
| MS.gene057450 | MS.gene79479 | 0.863668 | 2.11E-64 | -1.69E-46 |
| MS.gene057537 | MS.gene79479 | 0.812638 | 3.83E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene79479 | 0.801565 | 8.48E-49 | -1.69E-46 |
| MS.gene057754 | MS.gene79479 | 0.82177 | 3.38E-53 | -1.69E-46 |
| MS.gene057796 | MS.gene79479 | 0.820808 | 5.64E-53 | -1.69E-46 |
| MS.gene057927 | MS.gene79479 | 0.826799 | 2.22E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene79479 | 0.86665 | 2.44E-65 | -1.69E-46 |
| MS.gene058007 | MS.gene79479 | 0.81194 | 5.44E-51 | -1.69E-46 |
| MS.gene058082 | MS.gene79479 | 0.900455 | 7.20E-78 | -1.69E-46 |
| MS.gene05811 | MS.gene79479 | 0.866581 | 2.57E-65 | -1.69E-46 |
| MS.gene058142 | MS.gene79479 | 0.890264 | 1.15E-73 | -1.69E-46 |
| MS.gene058233 | MS.gene79479 | 0.838212 | 3.29E-57 | -1.69E-46 |
| MS.gene058276 | MS.gene79479 | 0.875741 | 2.43E-68 | -1.69E-46 |
| MS.gene058293 | MS.gene79479 | 0.82834 | 9.49E-55 | -1.69E-46 |
| MS.gene058365 | MS.gene79479 | 0.860833 | 1.57E-63 | -1.69E-46 |
| MS.gene058371 | MS.gene79479 | 0.812119 | 4.98E-51 | -1.69E-46 |
| MS.gene058433 | MS.gene79479 | 0.830827 | 2.36E-55 | -1.69E-46 |
| MS.gene058435 | MS.gene79479 | 0.82338 | 1.43E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene79479 | 0.845389 | 4.19E-59 | -1.69E-46 |
| MS.gene058710 | MS.gene79479 | 0.852255 | 5.21E-61 | -1.69E-46 |
| MS.gene058749 | MS.gene79479 | 0.83219 | 1.09E-55 | -1.69E-46 |
| MS.gene058845 | MS.gene79479 | 0.848702 | 5.18E-60 | -1.69E-46 |
| MS.gene058928 | MS.gene79479 | 0.861898 | 7.42E-64 | -1.69E-46 |
| MS.gene05907 | MS.gene79479 | 0.868535 | 6.08E-66 | -1.69E-46 |
| MS.gene059285 | MS.gene79479 | 0.883327 | 4.93E-71 | -1.69E-46 |
| MS.gene059294 | MS.gene79479 | 0.832575 | 8.74E-56 | -1.69E-46 |
| MS.gene059342 | MS.gene79479 | 0.812312 | 4.52E-51 | -1.69E-46 |
| MS.gene059366 | MS.gene79479 | 0.818792 | 1.63E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene79479 | 0.807363 | 5.24E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene79479 | 0.84435 | 7.98E-59 | -1.69E-46 |
| MS.gene059597 | MS.gene79479 | 0.88001 | 7.80E-70 | -1.69E-46 |
| MS.gene05959 | MS.gene79479 | 0.869291 | 3.46E-66 | -1.69E-46 |
| MS.gene059676 | MS.gene79479 | 0.865296 | 6.55E-65 | -1.69E-46 |
| MS.gene059688 | MS.gene79479 | 0.866295 | 3.17E-65 | -1.69E-46 |
| MS.gene059692 | MS.gene79479 | 0.879077 | 1.67E-69 | -1.69E-46 |
| MS.gene059695 | MS.gene79479 | 0.873127 | 1.87E-67 | -1.69E-46 |
| MS.gene059708 | MS.gene79479 | 0.855075 | 8.05E-62 | -1.69E-46 |
| MS.gene059788 | MS.gene79479 | 0.838393 | 2.95E-57 | -1.69E-46 |
| MS.gene059807 | MS.gene79479 | 0.835019 | 2.14E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene79479 | 0.895392 | 1.00E-75 | -1.69E-46 |
| MS.gene059894 | MS.gene79479 | 0.927337 | 1.35E-91 | -1.69E-46 |
| MS.gene059899 | MS.gene79479 | 0.884656 | 1.59E-71 | -1.69E-46 |
| MS.gene060084 | MS.gene79479 | 0.806928 | 6.48E-50 | -1.69E-46 |
| MS.gene060247 | MS.gene79479 | 0.809112 | 2.22E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene79479 | 0.832427 | 9.51E-56 | -1.69E-46 |
| MS.gene060407 | MS.gene79479 | 0.872286 | 3.57E-67 | -1.69E-46 |
| MS.gene060476 | MS.gene79479 | 0.809378 | 1.95E-50 | -1.69E-46 |
| MS.gene060495 | MS.gene79479 | 0.871415 | 6.95E-67 | -1.69E-46 |
| MS.gene060496 | MS.gene79479 | 0.853474 | 2.33E-61 | -1.69E-46 |
| MS.gene06090 | MS.gene79479 | 0.844075 | 9.46E-59 | -1.69E-46 |
| MS.gene060943 | MS.gene79479 | 0.809745 | 1.63E-50 | -1.69E-46 |
| MS.gene061002 | MS.gene79479 | 0.800718 | 1.26E-48 | -1.69E-46 |
| MS.gene061041 | MS.gene79479 | 0.8068 | 6.90E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene79479 | 0.911639 | 4.84E-83 | -1.69E-46 |
| MS.gene061051 | MS.gene79479 | -0.867695 | 1.13E-65 | -1.69E-46 |
| MS.gene061112 | MS.gene79479 | 0.824684 | 7.06E-54 | -1.69E-46 |
| MS.gene061154 | MS.gene79479 | 0.833101 | 6.47E-56 | -1.69E-46 |
| MS.gene061159 | MS.gene79479 | 0.852368 | 4.83E-61 | -1.69E-46 |
| MS.gene061265 | MS.gene79479 | 0.824598 | 7.40E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79479.t1 | MTR_3g085280 | 96.257 | 187 | 3 | 1 | 1 | 183 | 1 | 187 | 7.63e-133 | 370 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79479.t1 | AT1G27385 | 72.308 | 130 | 30 | 1 | 54 | 183 | 61 | 184 | 2.01e-62 | 192 |
| MS.gene79479.t1 | AT1G27385 | 72.308 | 130 | 30 | 1 | 54 | 183 | 61 | 184 | 3.28e-62 | 192 |
| MS.gene79479.t1 | AT1G27385 | 71.538 | 130 | 30 | 2 | 54 | 183 | 61 | 183 | 8.20e-60 | 185 |
| MS.gene79479.t1 | AT1G27385 | 71.538 | 130 | 30 | 2 | 54 | 183 | 61 | 183 | 3.36e-59 | 185 |
Find 54 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGACTGGCCCAATGTTTA+CGG | 0.293987 | 3.4:+79657509 | None:intergenic |
| GCTGTGTTGAAGGCCATTTC+AGG | 0.308532 | 3.4:-79660104 | MS.gene79479:intron |
| CGAAAACCTCCTCTCTTATT+CGG | 0.315627 | 3.4:+79660239 | None:intergenic |
| ATGGGTTGCTTTAGACAAAA+AGG | 0.324861 | 3.4:-79659920 | MS.gene79479:intron |
| GTAAAGGTTTGAATTGGAAT+TGG | 0.326338 | 3.4:+79660276 | None:intergenic |
| CAAACTACGAATATGGTTAT+TGG | 0.349962 | 3.4:-79659973 | MS.gene79479:CDS |
| TGAATACATACCCAACTGTT+AGG | 0.369842 | 3.4:-79659727 | MS.gene79479:CDS |
| GATAGGACAAACTACGAATA+TGG | 0.387015 | 3.4:-79659980 | MS.gene79479:CDS |
| TCCTCAAGAAGCTGTGTTGA+AGG | 0.392868 | 3.4:-79660114 | MS.gene79479:CDS |
| CCAAGTTGTTTCCAGCGAAC+AGG | 0.415316 | 3.4:-79657490 | None:intergenic |
| ATAAAACATACCTGGGGAAT+GGG | 0.419641 | 3.4:+79659626 | None:intergenic |
| CGTCCCTTTCACCGTGGTAA+TGG | 0.421777 | 3.4:-79660197 | MS.gene79479:CDS |
| GTGAAAGGGACGAGCCTTAA+CGG | 0.448927 | 3.4:+79660208 | None:intergenic |
| CCTGTTCGCTGGAAACAACT+TGG | 0.461413 | 3.4:+79657490 | None:intergenic |
| CGGATGATTCTACTAATGAA+TGG | 0.463843 | 3.4:-79659939 | MS.gene79479:CDS |
| GAAGATGGAATTACCTGAAA+TGG | 0.471281 | 3.4:+79660091 | None:intergenic |
| CATAAAACATACCTGGGGAA+TGG | 0.489276 | 3.4:+79659625 | None:intergenic |
| GAATACATACCCAACTGTTA+GGG | 0.490009 | 3.4:-79659726 | MS.gene79479:CDS |
| AATATGTGTCCGTAAACATT+GGG | 0.511909 | 3.4:-79657518 | MS.gene79479:CDS |
| AAATATGTGTCCGTAAACAT+TGG | 0.512566 | 3.4:-79657519 | MS.gene79479:CDS |
| GGATGATTCTACTAATGAAT+GGG | 0.513339 | 3.4:-79659938 | MS.gene79479:CDS |
| AATTCCATTACCACGGTGAA+AGG | 0.519265 | 3.4:+79660193 | None:intergenic |
| GGGTTCACTGCAATAGGAAC+CGG | 0.532077 | 3.4:-79659704 | MS.gene79479:CDS |
| AGGCAGAAATACCTGTTCGC+TGG | 0.537747 | 3.4:+79657479 | None:intergenic |
| TCGCTGGAAACAACTTGGAC+TGG | 0.541126 | 3.4:+79657495 | None:intergenic |
| GCCTTCAACACAGCTTCTTG+AGG | 0.541456 | 3.4:+79660113 | None:intergenic |
| ATACCTGGGGAATGGGCTGT+TGG | 0.541945 | 3.4:+79659633 | None:intergenic |
| ATTCCATTACCACGGTGAAA+GGG | 0.551205 | 3.4:+79660194 | None:intergenic |
| TTCACTGCAATAGGAACCGG+TGG | 0.562823 | 3.4:-79659701 | MS.gene79479:CDS |
| GGATGACTTCGTGCAAGCTA+TGG | 0.570776 | 3.4:-79659678 | MS.gene79479:CDS |
| TCTAAGACAGAAGGAAGGAT+AGG | 0.570938 | 3.4:-79659997 | MS.gene79479:CDS |
| GCTTCGTTCAGCGATGATTG+TGG | 0.572314 | 3.4:-79660312 | MS.gene79479:CDS |
| AATTGGAATTGGAATTGCAA+TGG | 0.580064 | 3.4:+79660287 | None:intergenic |
| AATCCAACAGCCCATTCCCC+AGG | 0.580170 | 3.4:-79659636 | MS.gene79479:intron |
| ACTACGAATATGGTTATTGG+AGG | 0.589546 | 3.4:-79659970 | MS.gene79479:CDS |
| TTCAACACAGCTTCTTGAGG+AGG | 0.596405 | 3.4:+79660116 | None:intergenic |
| GCAGAGGTATCTAAGACAGA+AGG | 0.603237 | 3.4:-79660006 | MS.gene79479:intron |
| AATTTGAATCCGAATAAGAG+AGG | 0.614217 | 3.4:-79660248 | MS.gene79479:CDS |
| TTGAATCCGAATAAGAGAGG+AGG | 0.625769 | 3.4:-79660245 | MS.gene79479:CDS |
| GAAGCACAAGGTATCAGCAA+GGG | 0.626581 | 3.4:-79657544 | MS.gene79479:CDS |
| TGAAGCACAAGGTATCAGCA+AGG | 0.632271 | 3.4:-79657545 | MS.gene79479:CDS |
| AAGCACAAGGTATCAGCAAG+GGG | 0.636193 | 3.4:-79657543 | MS.gene79479:CDS |
| AGGTATCTAAGACAGAAGGA+AGG | 0.645582 | 3.4:-79660002 | MS.gene79479:CDS |
| GGTTATTGGAGGAACTGTCA+CGG | 0.650079 | 3.4:-79659959 | MS.gene79479:CDS |
| AATACATACCCAACTGTTAG+GGG | 0.655407 | 3.4:-79659725 | MS.gene79479:CDS |
| ACAGGGGAGTGTGAAGCACA+AGG | 0.655631 | 3.4:-79657556 | MS.gene79479:intron |
| TTGCACGAAGTCATCCCCAC+CGG | 0.656764 | 3.4:+79659685 | None:intergenic |
| CACTGCAATAGGAACCGGTG+GGG | 0.661994 | 3.4:-79659699 | MS.gene79479:CDS |
| AACGGAGAATTCCATTACCA+CGG | 0.679173 | 3.4:+79660186 | None:intergenic |
| GTGTATCGTTACGAGAGCAA+CGG | 0.696668 | 3.4:+79660168 | None:intergenic |
| ATACATACCCAACTGTTAGG+GGG | 0.700615 | 3.4:-79659724 | MS.gene79479:CDS |
| TCACTGCAATAGGAACCGGT+GGG | 0.708899 | 3.4:-79659700 | MS.gene79479:CDS |
| AAGGCTCGTCCCTTTCACCG+TGG | 0.745511 | 3.4:-79660203 | MS.gene79479:CDS |
| TCATCGTGAAAAGACGACGA+CGG | 0.780619 | 3.4:+79660146 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTGAACA+AGG | - | chr3.4:79659619-79659638 | MS.gene79479:intron | 10.0% |
| !! | ACCAAATATTATTCTTATAA+AGG | - | chr3.4:79658416-79658435 | MS.gene79479:intron | 15.0% |
| !! | ACCTTTATAAGAATAATATT+TGG | + | chr3.4:79658420-79658439 | None:intergenic | 15.0% |
| !! | TAACAATTTAATACAATTCT+TGG | + | chr3.4:79658809-79658828 | None:intergenic | 15.0% |
| !! | AATTAAATCAAATGTGAAGA+TGG | + | chr3.4:79657747-79657766 | None:intergenic | 20.0% |
| !! | GGATTCAAATTAAAAAGTAA+AGG | + | chr3.4:79657563-79657582 | None:intergenic | 20.0% |
| !! | GTATAAAAAAAAAGTTGTTG+CGG | + | chr3.4:79658336-79658355 | None:intergenic | 20.0% |
| !! | TAAAAAGTAAAGGTTTGAAT+TGG | + | chr3.4:79657553-79657572 | None:intergenic | 20.0% |
| !! | TCAAAAGTTAGTATTTAGAA+GGG | - | chr3.4:79659698-79659717 | MS.gene79479:CDS | 20.0% |
| !!! | AGCCTAAAATTTTCTTATTT+GGG | + | chr3.4:79659783-79659802 | None:intergenic | 20.0% |
| !!! | ATCTATCTGCTAAATATTTT+TGG | - | chr3.4:79658760-79658779 | MS.gene79479:intron | 20.0% |
| !!! | ATGAACAGTTTTCATTAATA+TGG | - | chr3.4:79660180-79660199 | MS.gene79479:CDS | 20.0% |
| !!! | CTAAATATTTTTGGCTTATA+AGG | - | chr3.4:79658769-79658788 | MS.gene79479:intron | 20.0% |
| !!! | TAGCCTAAAATTTTCTTATT+TGG | + | chr3.4:79659784-79659803 | None:intergenic | 20.0% |
| !!! | TCAATACTTTTTCAGAAATT+TGG | - | chr3.4:79658245-79658264 | MS.gene79479:intron | 20.0% |
| ! | AAGTTGCACCTATTTATTTA+GGG | - | chr3.4:79658276-79658295 | MS.gene79479:intron | 25.0% |
| ! | AATGTTAACATATTGCTTAC+AGG | - | chr3.4:79660246-79660265 | MS.gene79479:CDS | 25.0% |
| ! | ATATTCGTATCCATATTCAA+GGG | - | chr3.4:79659110-79659129 | MS.gene79479:intron | 25.0% |
| ! | ATGATAATATGTAAACCTGA+CGG | + | chr3.4:79658860-79658879 | None:intergenic | 25.0% |
| ! | ATGTTAACATATTGCTTACA+GGG | - | chr3.4:79660247-79660266 | MS.gene79479:CDS | 25.0% |
| ! | GAGCTTCAAATAAATGTTAA+TGG | - | chr3.4:79657789-79657808 | MS.gene79479:intron | 25.0% |
| ! | GATCATCATTAACAATAAGT+TGG | + | chr3.4:79660052-79660071 | None:intergenic | 25.0% |
| ! | GTCAAAAGTTAGTATTTAGA+AGG | - | chr3.4:79659697-79659716 | MS.gene79479:CDS | 25.0% |
| ! | TAAAATTCATAACTTAGTCC+CGG | - | chr3.4:79659941-79659960 | MS.gene79479:CDS | 25.0% |
| ! | TAAGTTGCACCTATTTATTT+AGG | - | chr3.4:79658275-79658294 | MS.gene79479:intron | 25.0% |
| ! | TAGACACAAAATTAACCTTA+CGG | + | chr3.4:79658464-79658483 | None:intergenic | 25.0% |
| ! | TATATTCGTATCCATATTCA+AGG | - | chr3.4:79659109-79659128 | MS.gene79479:intron | 25.0% |
| ! | TGAAGTCCTTGAAAATTATA+TGG | - | chr3.4:79659517-79659536 | MS.gene79479:intron | 25.0% |
| ! | TTGATACATAAAACATACCT+GGG | + | chr3.4:79658204-79658223 | None:intergenic | 25.0% |
| !! | GTCCCAAATAAGAAAATTTT+AGG | - | chr3.4:79659778-79659797 | MS.gene79479:intron | 25.0% |
| !!! | AATATTTTTGGCTTATAAGG+TGG | - | chr3.4:79658772-79658791 | MS.gene79479:intron | 25.0% |
| !!! | TATAATTTTCAAGGACTTCA+TGG | + | chr3.4:79659517-79659536 | None:intergenic | 25.0% |
| !!! | TATTTGTTGTTATTACCGTA+AGG | - | chr3.4:79658446-79658465 | MS.gene79479:intron | 25.0% |
| !!! | TCTTTTAAAAGGTCTAACTT+GGG | + | chr3.4:79659305-79659324 | None:intergenic | 25.0% |
| !!! | TTTTTCAGAAATTTGGACAT+TGG | - | chr3.4:79658252-79658271 | MS.gene79479:intron | 25.0% |
| !!! | TTTTTTTTTTGAACAAGGAG+AGG | - | chr3.4:79659624-79659643 | MS.gene79479:intron | 25.0% |
| AAACCATTTACAGCACATAT+TGG | + | chr3.4:79659049-79659068 | None:intergenic | 30.0% | |
| AAATATGTGTCCGTAAACAT+TGG | - | chr3.4:79660301-79660320 | MS.gene79479:CDS | 30.0% | |
| AATATGTGTCCGTAAACATT+GGG | - | chr3.4:79660302-79660321 | MS.gene79479:CDS | 30.0% | |
| AATTGGAATTGGAATTGCAA+TGG | + | chr3.4:79657536-79657555 | None:intergenic | 30.0% | |
| AATTTGAATCCGAATAAGAG+AGG | - | chr3.4:79657572-79657591 | MS.gene79479:intron | 30.0% | |
| ACAATATGGATATGTAGAGT+TGG | - | chr3.4:79660007-79660026 | MS.gene79479:intron | 30.0% | |
| AGGTTTACATATTATCATCG+AGG | - | chr3.4:79658862-79658881 | MS.gene79479:intron | 30.0% | |
| AGTTGCACCTATTTATTTAG+GGG | - | chr3.4:79658277-79658296 | MS.gene79479:intron | 30.0% | |
| ATAAATGTTAATGGTTGCAG+AGG | - | chr3.4:79657798-79657817 | MS.gene79479:intron | 30.0% | |
| ATCTTATATGCTGTGTAACT+TGG | - | chr3.4:79658495-79658514 | MS.gene79479:intron | 30.0% | |
| CAAACTACGAATATGGTTAT+TGG | - | chr3.4:79657847-79657866 | MS.gene79479:intron | 30.0% | |
| GGAAACTGAAATACCATTAA+AGG | + | chr3.4:79659808-79659827 | None:intergenic | 30.0% | |
| GGATGATTCTACTAATGAAT+GGG | - | chr3.4:79657882-79657901 | MS.gene79479:intron | 30.0% | |
| GTAAAGGTTTGAATTGGAAT+TGG | + | chr3.4:79657547-79657566 | None:intergenic | 30.0% | |
| GTTGATACATAAAACATACC+TGG | + | chr3.4:79658205-79658224 | None:intergenic | 30.0% | |
| TCTACATATCCATATTGTGT+TGG | + | chr3.4:79660005-79660024 | None:intergenic | 30.0% | |
| TGATACATAAAACATACCTG+GGG | + | chr3.4:79658203-79658222 | None:intergenic | 30.0% | |
| TGTCCTTATAAAAAGACTAG+AGG | - | chr3.4:79659161-79659180 | MS.gene79479:intron | 30.0% | |
| TGTTAACATATTGCTTACAG+GGG | - | chr3.4:79660248-79660267 | MS.gene79479:CDS | 30.0% | |
| TTTCATAAGAGACTTCTAGA+AGG | + | chr3.4:79659080-79659099 | None:intergenic | 30.0% | |
| ! | ACTAGTCTAAATGAGACAAT+GGG | - | chr3.4:79658929-79658948 | MS.gene79479:intron | 30.0% |
| ! | GAGAAGCCATATAATTTTCA+AGG | + | chr3.4:79659526-79659545 | None:intergenic | 30.0% |
| ! | TAAATTTTATCATCACCCAC+CGG | + | chr3.4:79659963-79659982 | None:intergenic | 30.0% |
| ! | TTCATAAGAGACTTCTAGAA+GGG | + | chr3.4:79659079-79659098 | None:intergenic | 30.0% |
| !! | CTTTTAAAAGGTCTAACTTG+GGG | + | chr3.4:79659304-79659323 | None:intergenic | 30.0% |
| !! | GTCTTTTAAAAGGTCTAACT+TGG | + | chr3.4:79659306-79659325 | None:intergenic | 30.0% |
| !! | TACTAACTTTTGACTGTTGT+TGG | + | chr3.4:79659691-79659710 | None:intergenic | 30.0% |
| !!! | AATTTTAGGCTAGCCTTTAA+TGG | - | chr3.4:79659792-79659811 | MS.gene79479:intron | 30.0% |
| AATACATACCCAACTGTTAG+GGG | - | chr3.4:79658095-79658114 | MS.gene79479:intron | 35.0% | |
| ACATCTTCACTTACATTTGG+TGG | - | chr3.4:79660204-79660223 | MS.gene79479:CDS | 35.0% | |
| ACTACGAATATGGTTATTGG+AGG | - | chr3.4:79657850-79657869 | MS.gene79479:intron | 35.0% | |
| AGAAGAACACCAACACAATA+TGG | - | chr3.4:79659993-79660012 | MS.gene79479:CDS | 35.0% | |
| ATAAAACATACCTGGGGAAT+GGG | + | chr3.4:79658197-79658216 | None:intergenic | 35.0% | |
| ATAATATGTAAACCTGACGG+TGG | + | chr3.4:79658857-79658876 | None:intergenic | 35.0% | |
| CCTTATAAAAAGACTAGAGG+AGG | - | chr3.4:79659164-79659183 | MS.gene79479:intron | 35.0% | |
| CGGATGATTCTACTAATGAA+TGG | - | chr3.4:79657881-79657900 | MS.gene79479:intron | 35.0% | |
| CTAGTCTAAATGAGACAATG+GGG | - | chr3.4:79658930-79658949 | MS.gene79479:intron | 35.0% | |
| GAAGATGGAATTACCTGAAA+TGG | + | chr3.4:79657732-79657751 | None:intergenic | 35.0% | |
| GAATACATACCCAACTGTTA+GGG | - | chr3.4:79658094-79658113 | MS.gene79479:intron | 35.0% | |
| GATAGGACAAACTACGAATA+TGG | - | chr3.4:79657840-79657859 | MS.gene79479:intron | 35.0% | |
| GATCATAGGATTTCACACAA+TGG | - | chr3.4:79658995-79659014 | MS.gene79479:intron | 35.0% | |
| GGTACATCTTCACTTACATT+TGG | - | chr3.4:79660201-79660220 | MS.gene79479:CDS | 35.0% | |
| TATAAAAAGACTAGAGGAGG+AGG | - | chr3.4:79659167-79659186 | MS.gene79479:intron | 35.0% | |
| TGAATACATACCCAACTGTT+AGG | - | chr3.4:79658093-79658112 | MS.gene79479:intron | 35.0% | |
| TTCAAGGACTTCATGGAATT+TGG | + | chr3.4:79659510-79659529 | None:intergenic | 35.0% | |
| TTGCCAATATGTGCTGTAAA+TGG | - | chr3.4:79659043-79659062 | MS.gene79479:intron | 35.0% | |
| ! | AAATTTTATCATCACCCACC+GGG | + | chr3.4:79659962-79659981 | None:intergenic | 35.0% |
| ! | ATGGGTTGCTTTAGACAAAA+AGG | - | chr3.4:79657900-79657919 | MS.gene79479:intron | 35.0% |
| ! | ATTGTGTTGGTGTTCTTCTA+CGG | + | chr3.4:79659992-79660011 | None:intergenic | 35.0% |
| ! | CACTAGTCTAAATGAGACAA+TGG | - | chr3.4:79658928-79658947 | MS.gene79479:intron | 35.0% |
| ! | CTTTTCCTATAACAACTCGA+AGG | + | chr3.4:79660148-79660167 | None:intergenic | 35.0% |
| ! | TCACTGTCTCGTCTTTTAAA+AGG | + | chr3.4:79659316-79659335 | None:intergenic | 35.0% |
| ! | TGACTTTAGAAGTCCAGTAT+AGG | - | chr3.4:79658674-79658693 | MS.gene79479:intron | 35.0% |
| !! | CCTCCTCTAGTCTTTTTATA+AGG | + | chr3.4:79659167-79659186 | None:intergenic | 35.0% |
| !! | CTGTTGTGTGTTACTTACAT+AGG | - | chr3.4:79658070-79658089 | MS.gene79479:intron | 35.0% |
| !! | GATTTCCTTCGAGTTGTTAT+AGG | - | chr3.4:79660140-79660159 | MS.gene79479:CDS | 35.0% |
| AAAAGGTCTAACTTGGGGAT+GGG | + | chr3.4:79659299-79659318 | None:intergenic | 40.0% | |
| AACCATGAGTAGCTGCTTAA+AGG | + | chr3.4:79659025-79659044 | None:intergenic | 40.0% | |
| AACCTTTAAGCAGCTACTCA+TGG | - | chr3.4:79659020-79659039 | MS.gene79479:intron | 40.0% | |
| AACGGAGAATTCCATTACCA+CGG | + | chr3.4:79657637-79657656 | None:intergenic | 40.0% | |
| AAGGACTTCATGGAATTTGG+AGG | + | chr3.4:79659507-79659526 | None:intergenic | 40.0% | |
| AAGTGGAGAAGCAAAAGATG+AGG | + | chr3.4:79659418-79659437 | None:intergenic | 40.0% | |
| AATTCATAACTTAGTCCCGG+TGG | - | chr3.4:79659944-79659963 | MS.gene79479:CDS | 40.0% | |
| AATTCCATTACCACGGTGAA+AGG | + | chr3.4:79657630-79657649 | None:intergenic | 40.0% | |
| ACGTATCGTAACAGTTGTCA+AGG | - | chr3.4:79659907-79659926 | MS.gene79479:intron | 40.0% | |
| ATACATACCCAACTGTTAGG+GGG | - | chr3.4:79658096-79658115 | MS.gene79479:intron | 40.0% | |
| ATGCAATCTTAGAACCACCA+CGG | + | chr3.4:79658728-79658747 | None:intergenic | 40.0% | |
| ATTCATAACTTAGTCCCGGT+GGG | - | chr3.4:79659945-79659964 | MS.gene79479:CDS | 40.0% | |
| ATTCCATTACCACGGTGAAA+GGG | + | chr3.4:79657629-79657648 | None:intergenic | 40.0% | |
| ATTGACGTGATGCTTATTGC+TGG | - | chr3.4:79658530-79658549 | MS.gene79479:intron | 40.0% | |
| CATAAAACATACCTGGGGAA+TGG | + | chr3.4:79658198-79658217 | None:intergenic | 40.0% | |
| CGAAAACCTCCTCTCTTATT+CGG | + | chr3.4:79657584-79657603 | None:intergenic | 40.0% | |
| CGGTGCAAAATTCCAAACAT+GGG | + | chr3.4:79659842-79659861 | None:intergenic | 40.0% | |
| GATCAAATTGCAGCCTATAC+TGG | + | chr3.4:79658690-79658709 | None:intergenic | 40.0% | |
| TAAAAGGTCTAACTTGGGGA+TGG | + | chr3.4:79659300-79659319 | None:intergenic | 40.0% | |
| TAATGGAAAGATCAGTCACC+CGG | + | chr3.4:79659203-79659222 | None:intergenic | 40.0% | |
| TATCGTAACAGTTGTCAAGG+TGG | - | chr3.4:79659910-79659929 | MS.gene79479:intron | 40.0% | |
| TCGGTGCAAAATTCCAAACA+TGG | + | chr3.4:79659843-79659862 | None:intergenic | 40.0% | |
| TGCACCTATTTATTTAGGGG+CGG | - | chr3.4:79658280-79658299 | MS.gene79479:intron | 40.0% | |
| TTATGAAGGACGCTGATCAT+AGG | - | chr3.4:79658981-79659000 | MS.gene79479:intron | 40.0% | |
| TTGAATCCGAATAAGAGAGG+AGG | - | chr3.4:79657575-79657594 | MS.gene79479:intron | 40.0% | |
| TTTGCTGCATCCCTTGAATA+TGG | + | chr3.4:79659123-79659142 | None:intergenic | 40.0% | |
| ! | AGGTATCTAAGACAGAAGGA+AGG | - | chr3.4:79657818-79657837 | MS.gene79479:intron | 40.0% |
| ! | GCTTGACATAGTTTGTGGTT+TGG | + | chr3.4:79658835-79658854 | None:intergenic | 40.0% |
| ! | GGTAAAAAGCACATTCCTGT+TGG | + | chr3.4:79659870-79659889 | None:intergenic | 40.0% |
| ! | GTGTAGGTAGGAGTACATAA+TGG | + | chr3.4:79659220-79659239 | None:intergenic | 40.0% |
| ! | TCGTCTTTTCACGATGATCA+AGG | - | chr3.4:79657680-79657699 | MS.gene79479:intron | 40.0% |
| ! | TCTAAGACAGAAGGAAGGAT+AGG | - | chr3.4:79657823-79657842 | MS.gene79479:intron | 40.0% |
| !! | GAGACTTCTAGAAGGGATTT+TGG | + | chr3.4:79659072-79659091 | None:intergenic | 40.0% |
| !! | GTTTGGAATTTTGCACCGAA+TGG | - | chr3.4:79659844-79659863 | MS.gene79479:intron | 40.0% |
| AAAGACTAGAGGAGGAGGTT+TGG | - | chr3.4:79659172-79659191 | MS.gene79479:intron | 45.0% | |
| AACCCCGCCCCTAAATAAAT+AGG | + | chr3.4:79658287-79658306 | None:intergenic | 45.0% | |
| AATGGAAAGATCAGTCACCC+GGG | + | chr3.4:79659202-79659221 | None:intergenic | 45.0% | |
| ATGCTCGTACACACATTGAG+AGG | - | chr3.4:79659586-79659605 | MS.gene79479:intron | 45.0% | |
| CAAACATGGGACTCAGTGAA+AGG | + | chr3.4:79659829-79659848 | None:intergenic | 45.0% | |
| CACCTATTTATTTAGGGGCG+GGG | - | chr3.4:79658282-79658301 | MS.gene79479:intron | 45.0% | |
| CTCAGGACCTTGCATTATGA+AGG | - | chr3.4:79658967-79658986 | MS.gene79479:intron | 45.0% | |
| CTTTCACTGAGTCCCATGTT+TGG | - | chr3.4:79659827-79659846 | MS.gene79479:intron | 45.0% | |
| GCACCTATTTATTTAGGGGC+GGG | - | chr3.4:79658281-79658300 | MS.gene79479:intron | 45.0% | |
| GGAGAAGGCTAAAGACTGTT+GGG | + | chr3.4:79659278-79659297 | None:intergenic | 45.0% | |
| GGTTATTGGAGGAACTGTCA+CGG | - | chr3.4:79657861-79657880 | MS.gene79479:intron | 45.0% | |
| GTGTATCGTTACGAGAGCAA+CGG | + | chr3.4:79657655-79657674 | None:intergenic | 45.0% | |
| TCAGCGTCCTTCATAATGCA+AGG | + | chr3.4:79658977-79658996 | None:intergenic | 45.0% | |
| TCATCGTGAAAAGACGACGA+CGG | + | chr3.4:79657677-79657696 | None:intergenic | 45.0% | |
| TCCTCAAGAAGCTGTGTTGA+AGG | - | chr3.4:79657706-79657725 | MS.gene79479:intron | 45.0% | |
| TCGAAGGAAATCACAGTGCA+TGG | + | chr3.4:79660132-79660151 | None:intergenic | 45.0% | |
| TTCAACACAGCTTCTTGAGG+AGG | + | chr3.4:79657707-79657726 | None:intergenic | 45.0% | |
| TTCTCCACTTGCTCTCTAGA+TGG | - | chr3.4:79659428-79659447 | MS.gene79479:intron | 45.0% | |
| ! | AAGCACAAGGTATCAGCAAG+GGG | - | chr3.4:79660277-79660296 | MS.gene79479:CDS | 45.0% |
| ! | GAAGCACAAGGTATCAGCAA+GGG | - | chr3.4:79660276-79660295 | MS.gene79479:CDS | 45.0% |
| ! | TGAAGCACAAGGTATCAGCA+AGG | - | chr3.4:79660275-79660294 | MS.gene79479:CDS | 45.0% |
| ! | TTTTCGCTGCAGAACCGTTA+AGG | - | chr3.4:79657598-79657617 | MS.gene79479:intron | 45.0% |
| !! | GCAGAGGTATCTAAGACAGA+AGG | - | chr3.4:79657814-79657833 | MS.gene79479:intron | 45.0% |
| !! | TTGGACTGGCCCAATGTTTA+CGG | + | chr3.4:79660314-79660333 | None:intergenic | 45.0% |
| AAAGACTGTTGGGAGAGTCC+AGG | + | chr3.4:79659268-79659287 | None:intergenic | 50.0% | |
| AACTATGTCAAGCCACCGTC+AGG | - | chr3.4:79658842-79658861 | MS.gene79479:intron | 50.0% | |
| AAGACTGTTGGGAGAGTCCA+GGG | + | chr3.4:79659267-79659286 | None:intergenic | 50.0% | |
| ACGTACTCTTCTGCACAAGC+AGG | + | chr3.4:79659891-79659910 | None:intergenic | 50.0% | |
| AGTGCATCCAACCTGATGTC+AGG | - | chr3.4:79659473-79659492 | MS.gene79479:intron | 50.0% | |
| CAGTGAACCCCCTAACAGTT+GGG | + | chr3.4:79658106-79658125 | None:intergenic | 50.0% | |
| CGGTGGCTTGACATAGTTTG+TGG | + | chr3.4:79658840-79658859 | None:intergenic | 50.0% | |
| GAGGTTAGAATCAGCTCCAC+CGG | + | chr3.4:79659399-79659418 | None:intergenic | 50.0% | |
| GCACATTCCTGTTGGCCATT+CGG | + | chr3.4:79659862-79659881 | None:intergenic | 50.0% | |
| GCCTTCAACACAGCTTCTTG+AGG | + | chr3.4:79657710-79657729 | None:intergenic | 50.0% | |
| GCTGTGTTGAAGGCCATTTC+AGG | - | chr3.4:79657716-79657735 | MS.gene79479:intron | 50.0% | |
| GCTTCGTTCAGCGATGATTG+TGG | - | chr3.4:79657508-79657527 | MS.gene79479:CDS | 50.0% | |
| GGATGACTTCGTGCAAGCTA+TGG | - | chr3.4:79658142-79658161 | MS.gene79479:intron | 50.0% | |
| GGGAGAAGGCTAAAGACTGT+TGG | + | chr3.4:79659279-79659298 | None:intergenic | 50.0% | |
| GGGTTCACTGCAATAGGAAC+CGG | - | chr3.4:79658116-79658135 | MS.gene79479:intron | 50.0% | |
| GGTTCCATCTAGAGAGCAAG+TGG | + | chr3.4:79659435-79659454 | None:intergenic | 50.0% | |
| GTGAAAGGGACGAGCCTTAA+CGG | + | chr3.4:79657615-79657634 | None:intergenic | 50.0% | |
| GTTAGGGGGTTCACTGCAAT+AGG | - | chr3.4:79658110-79658129 | MS.gene79479:intron | 50.0% | |
| TCAAGGGATGCAGCAAAGTC+TGG | - | chr3.4:79659126-79659145 | MS.gene79479:intron | 50.0% | |
| TCACTGCAATAGGAACCGGT+GGG | - | chr3.4:79658120-79658139 | MS.gene79479:intron | 50.0% | |
| TCGCTGGAAACAACTTGGAC+TGG | + | chr3.4:79660328-79660347 | None:intergenic | 50.0% | |
| TCTAACTTGGGGATGGGAGA+AGG | + | chr3.4:79659293-79659312 | None:intergenic | 50.0% | |
| TGTGTACGAGCATGCGTAAG+CGG | + | chr3.4:79659579-79659598 | None:intergenic | 50.0% | |
| TTCACTGCAATAGGAACCGG+TGG | - | chr3.4:79658119-79658138 | MS.gene79479:intron | 50.0% | |
| ! | CATGGAATTTGGAGGCACAC+TGG | + | chr3.4:79659499-79659518 | None:intergenic | 50.0% |
| ! | GGGACTAGTAATCACGACTC+AGG | - | chr3.4:79658950-79658969 | MS.gene79479:intron | 50.0% |
| ! | TTTTGCACCGAATGGCCAAC+AGG | - | chr3.4:79659852-79659871 | MS.gene79479:intron | 50.0% |
| !! | TGACATCAGGTTGGATGCAC+TGG | + | chr3.4:79659474-79659493 | None:intergenic | 50.0% |
| AATCCAACAGCCCATTCCCC+AGG | - | chr3.4:79658184-79658203 | MS.gene79479:intron | 55.0% | |
| ACAGAACACTCCCGAGTCGT+CGG | - | chr3.4:79659353-79659372 | MS.gene79479:intron | 55.0% | |
| AGAGTCCATGTCCGTCTAGC+CGG | - | chr3.4:79659377-79659396 | MS.gene79479:intron | 55.0% | |
| ATGCGTAAGCGGGCATGTAC+AGG | + | chr3.4:79659568-79659587 | None:intergenic | 55.0% | |
| ATGGACTCTTCCGACGACTC+GGG | + | chr3.4:79659366-79659385 | None:intergenic | 55.0% | |
| CACGCACCAGCAACCAAAGT+CGG | - | chr3.4:79659237-79659256 | MS.gene79479:intron | 55.0% | |
| CACTGCAATAGGAACCGGTG+GGG | - | chr3.4:79658121-79658140 | MS.gene79479:intron | 55.0% | |
| CATGGACTCTTCCGACGACT+CGG | + | chr3.4:79659367-79659386 | None:intergenic | 55.0% | |
| CGTCCCTTTCACCGTGGTAA+TGG | - | chr3.4:79657623-79657642 | MS.gene79479:intron | 55.0% | |
| CTTTGGTTGCTGGTGCGTGT+AGG | + | chr3.4:79659236-79659255 | None:intergenic | 55.0% | |
| GCAGTGAACCCCCTAACAGT+TGG | + | chr3.4:79658107-79658126 | None:intergenic | 55.0% | |
| GTGTACGAGCATGCGTAAGC+GGG | + | chr3.4:79659578-79659597 | None:intergenic | 55.0% | |
| TCTGCGTAGTTTAGCTGCCG+TGG | - | chr3.4:79658708-79658727 | MS.gene79479:intron | 55.0% | |
| TGGAACCTTCGTAGAGAGCC+TGG | - | chr3.4:79659448-79659467 | MS.gene79479:intron | 55.0% | |
| TTGCACGAAGTCATCCCCAC+CGG | + | chr3.4:79658138-79658157 | None:intergenic | 55.0% | |
| ! | AATCAGCTCCACCGGCTAGA+CGG | + | chr3.4:79659391-79659410 | None:intergenic | 55.0% |
| ! | ACACTGGCCTGACATCAGGT+TGG | + | chr3.4:79659483-79659502 | None:intergenic | 55.0% |
| ! | ACAGGGGAGTGTGAAGCACA+AGG | - | chr3.4:79660264-79660283 | MS.gene79479:CDS | 55.0% |
| !! | AGGAGGAGGTTTGGTTTGCC+CGG | - | chr3.4:79659181-79659200 | MS.gene79479:intron | 55.0% |
| !! | ATACCTGGGGAATGGGCTGT+TGG | + | chr3.4:79658190-79658209 | None:intergenic | 55.0% |
| AAGGCTCGTCCCTTTCACCG+TGG | - | chr3.4:79657617-79657636 | MS.gene79479:intron | 60.0% | |
| ACTGGCCAGGCTCTCTACGA+AGG | + | chr3.4:79659456-79659475 | None:intergenic | 60.0% | |
| ACTGTTGGGAGAGTCCAGGG+CGG | + | chr3.4:79659264-79659283 | None:intergenic | 60.0% | |
| GCGTAGTTTAGCTGCCGTGG+TGG | - | chr3.4:79658711-79658730 | MS.gene79479:intron | 60.0% | |
| GGTTGCTGGTGCGTGTAGGT+AGG | + | chr3.4:79659232-79659251 | None:intergenic | 60.0% | |
| ! | AGGCACACTGGCCTGACATC+AGG | + | chr3.4:79659487-79659506 | None:intergenic | 60.0% |
| !! | GGAGGAGGTTTGGTTTGCCC+GGG | - | chr3.4:79659182-79659201 | MS.gene79479:intron | 60.0% |
| !! | TCAGGTTGGATGCACTGGCC+AGG | + | chr3.4:79659469-79659488 | None:intergenic | 60.0% |
| AGTCCAGGGCGGTCCGACTT+TGG | + | chr3.4:79659253-79659272 | None:intergenic | 65.0% | |
| CAACCAAAGTCGGACCGCCC+TGG | - | chr3.4:79659247-79659266 | MS.gene79479:intron | 65.0% | |
| GGCGGTCCGACTTTGGTTGC+TGG | + | chr3.4:79659246-79659265 | None:intergenic | 65.0% | |
| GTCCATGTCCGTCTAGCCGG+TGG | - | chr3.4:79659380-79659399 | MS.gene79479:intron | 65.0% | |
| ! | CTCCACCGGCTAGACGGACA+TGG | + | chr3.4:79659385-79659404 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 79657491 | 79660351 | 79657491 | ID=MS.gene79479 |
| chr3.4 | mRNA | 79657491 | 79660351 | 79657491 | ID=MS.gene79479.t1;Parent=MS.gene79479 |
| chr3.4 | exon | 79660105 | 79660351 | 79660105 | ID=MS.gene79479.t1.exon1;Parent=MS.gene79479.t1 |
| chr3.4 | CDS | 79660105 | 79660351 | 79660105 | ID=cds.MS.gene79479.t1;Parent=MS.gene79479.t1 |
| chr3.4 | exon | 79659921 | 79660024 | 79659921 | ID=MS.gene79479.t1.exon2;Parent=MS.gene79479.t1 |
| chr3.4 | CDS | 79659921 | 79660024 | 79659921 | ID=cds.MS.gene79479.t1;Parent=MS.gene79479.t1 |
| chr3.4 | exon | 79659637 | 79659750 | 79659637 | ID=MS.gene79479.t1.exon3;Parent=MS.gene79479.t1 |
| chr3.4 | CDS | 79659637 | 79659750 | 79659637 | ID=cds.MS.gene79479.t1;Parent=MS.gene79479.t1 |
| chr3.4 | exon | 79657491 | 79657574 | 79657491 | ID=MS.gene79479.t1.exon4;Parent=MS.gene79479.t1 |
| chr3.4 | CDS | 79657491 | 79657574 | 79657491 | ID=cds.MS.gene79479.t1;Parent=MS.gene79479.t1 |
| Gene Sequence |
| Protein sequence |
