AlfalfaGEDB | MS.gene24158

M. sativa cultivar XinJiangDaYe / MS.gene24158

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24158.t1	RHN77606.1	88.5	616	67	2	1	614	7	620	4.10E-303	1050

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24158.t1	A0A396JH99	88.5	616	67	2	1	614	7	620	3.0e-303	1050.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049149	MS.gene24158	0.802882	4.54E-49	-1.69E-46
MS.gene049150	MS.gene24158	0.837073	6.44E-57	-1.69E-46
MS.gene049151	MS.gene24158	0.835212	1.91E-56	-1.69E-46
MS.gene049153	MS.gene24158	0.839791	1.28E-57	-1.69E-46
MS.gene049356	MS.gene24158	0.867967	9.26E-66	-1.69E-46
MS.gene049369	MS.gene24158	0.825358	4.90E-54	-1.69E-46
MS.gene049661	MS.gene24158	0.810653	1.04E-50	-1.69E-46
MS.gene049662	MS.gene24158	0.813436	2.56E-51	-1.69E-46
MS.gene049758	MS.gene24158	0.875197	3.72E-68	-1.69E-46
MS.gene049910	MS.gene24158	0.815344	9.70E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24158.t1	MTR_1g025180	88.474	616	67	2	1	614	7	620	0.0	1108
MS.gene24158.t1	MTR_1g025180	87.049	471	57	2	146	614	1	469	0.0	828
MS.gene24158.t1	MTR_3g113840	41.946	627	292	15	24	594	21	631	7.43e-117	362
MS.gene24158.t1	MTR_3g113840	42.265	627	290	16	24	594	21	631	7.92e-117	363

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 117 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGGAAATTGGCCAAAAT+TGG	0.342250	1.2:+892039	MS.gene24158:CDS
AACCTGAACAGAATGATAAA+TGG	0.312337	1.2:+893698	MS.gene24158:CDS
AACTGGAAGTTATGGATTAA+AGG	0.337379	1.2:+893949	MS.gene24158:CDS
AAGAAATGACTATTCTGCAA+TGG	0.540060	1.2:+894760	MS.gene24158:CDS
AAGAAGAACCATAAGTTCAA+TGG	0.458103	1.2:+891869	MS.gene24158:CDS
AAGACTCAAAACATGAAGCG+TGG	0.654533	1.2:+890583	None:intergenic
AAGACTTTCGCCTTGAACCG+AGG	0.587506	1.2:-892821	None:intergenic
AAGATCTTGCCCATTTGTCT+TGG	0.472158	1.2:-894892	None:intergenic
AAGTTCCTTGATAATATGGT+TGG	0.535952	1.2:-892156	None:intergenic
AATCCTAATGAAAGTAAGAA+TGG	0.512870	1.2:+893746	MS.gene24158:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAACAAATTGTCCTAAG+TGG	+	chr1.2:893371-893390	MS.gene24158:intron	30.0%
AACCTGAACAGAATGATAAA+TGG	+	chr1.2:893698-893717	MS.gene24158:CDS	30.0%
AAGAAATGACTATTCTGCAA+TGG	+	chr1.2:894760-894779	MS.gene24158:CDS	30.0%
AAGAAGAACCATAAGTTCAA+TGG	+	chr1.2:891869-891888	MS.gene24158:CDS	30.0%
AATGTTAATGCTTCTCTTGA+AGG	+	chr1.2:892230-892249	MS.gene24158:CDS	30.0%
ACAAATAAACTCTTCTTTGG+TGG	+	chr1.2:890625-890644	MS.gene24158:CDS	30.0%
ACAATTTAATTGTGGAGAAG+TGG	+	chr1.2:892531-892550	MS.gene24158:intron	30.0%
ACATTGCATAATATATGCAG+GGG	+	chr1.2:892330-892349	MS.gene24158:intron	30.0%
ACCAAACAAAACTCATTTGT+CGG	+	chr1.2:890683-890702	MS.gene24158:intron	30.0%
ACTCTAACAACGAAATAACA+TGG	+	chr1.2:894462-894481	MS.gene24158:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	890595	894934	890595	ID=MS.gene24158
chr1.2	mRNA	890595	894934	890595	ID=MS.gene24158.t1;Parent=MS.gene24158
chr1.2	exon	890595	890646	890595	ID=MS.gene24158.t1.exon1;Parent=MS.gene24158.t1
chr1.2	CDS	890595	890646	890595	ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1
chr1.2	exon	890794	890921	890794	ID=MS.gene24158.t1.exon2;Parent=MS.gene24158.t1
chr1.2	CDS	890794	890921	890794	ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1
chr1.2	exon	891034	891082	891034	ID=MS.gene24158.t1.exon3;Parent=MS.gene24158.t1
chr1.2	CDS	891034	891082	891034	ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1
chr1.2	exon	891825	891931	891825	ID=MS.gene24158.t1.exon4;Parent=MS.gene24158.t1
chr1.2	CDS	891825	891931	891825	ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1
chr1.2	exon	892038	892251	892038	ID=MS.gene24158.t1.exon5;Parent=MS.gene24158.t1
chr1.2	CDS	892038	892251	892038	ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1
chr1.2	exon	892821	893055	892821	ID=MS.gene24158.t1.exon6;Parent=MS.gene24158.t1
chr1.2	CDS	892821	893055	892821	ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1
chr1.2	exon	893143	893209	893143	ID=MS.gene24158.t1.exon7;Parent=MS.gene24158.t1
chr1.2	CDS	893143	893209	893143	ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1
chr1.2	exon	893301	893358	893301	ID=MS.gene24158.t1.exon8;Parent=MS.gene24158.t1
chr1.2	CDS	893301	893358	893301	ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1
chr1.2	exon	893483	893847	893483	ID=MS.gene24158.t1.exon9;Parent=MS.gene24158.t1
chr1.2	CDS	893483	893847	893483	ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1
chr1.2	exon	893926	894144	893926	ID=MS.gene24158.t1.exon10;Parent=MS.gene24158.t1
chr1.2	CDS	893926	894144	893926	ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1
chr1.2	exon	894584	894934	894584	ID=MS.gene24158.t1.exon11;Parent=MS.gene24158.t1
chr1.2	CDS	894584	894934	894584	ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1

Gene Sequence

>MS.gene24158

ATGAAGCGTGGAGCTAAGAAGCAAAGACACACAAATAAACTCTTCTTTGGTGGTAATCAACTTACACATTCTCGTTTTTTTCTCAGCTACCAAACAAAACTCATTTGTCGGTTTTTCTTTATTCTATCTCTCTTTTCTTTTATTATCAGATAACATTTTCTAGTTATCTATCTTACTTTCTTTTCTTTTTGACACATAGCTTTCCAATTCTCAAAGAAACCAAAGAAGCAAGAAAAAGTTAGAAGCTTAAGTGCTGTTACTCAAATGAGTTGTCATGTTTCTGAAAAACAACAAGAACATCCAAAGAGATTTAAGGTTCATAATAATGTAAGTATAATATAATGTGTTCTGTTTTATTTTTTATTTTTTTCATTTCTAAATTTTTATGGACTTTCATGCTTGATAATTATATTTATATTTTTTTAACTTTTGTTCTTAGTTTTTGAATGGATGCTATGGTGCTTCTGTTCCAAGGAAGCTACGTTCAGGTGAGTATAATTTTCTAATTCAAAATCAATGCTTTTTTAATTGTTTTTTTATCATTAGTATCTTCACTTTCTTTATATTTTTCCATAGGAACTCTATGAGTTTTATGATTAATTTCTTCACTTGAAGCAATCTTTGAAGCTTTTACTTTTTCTTTGTCATGATTGTTACACACTTGATTCTGTCTCTTTTTCTTTGTTTGTCAATTATTATTGCAAGATATTATATCTTTTCAGAAATATATACTGTAGCAGCTTTTGATTAACCAAAGGGCCATTTTTTTTTTAATGGCAAACATTTTGGATAATAAAGTTTACTTAAGCTTTTATACCATTTGAATAATTCATATTAAGCAGTTAGGTTCATTCAATAAGCTGTTTATGTTTTTGTTAGTATATTATAGGTGTGAAATATTCACTAACTTCACGAATAATTTTTGTCCGCGGATAATGTTATTTTCAATTTACAGGGCTCGAACATGAAACCTTGTTTGTTTATGTTAATTTGCAATGTCAATATTTATTTTCTATGTGTAATTATAAAATTTTAAACTGTATGGGATATAAGTTATGAACACAATTCTATAAGTTGTTATGAATACTTACAAAAGTGCTTTTGTGGATAAGCTTTTATAAAGCTCACATGTCTAGTTCTTTAATCTATTCTATTATCATGAATTTTTGTTATTCTGTTTGCTTAAAAGAAGTATGAACTTTATTTTTACTTTTCCTTTTGAAATTACAGCCATGAAGAAGCGCGGTCGCGAATCCATCTTACATGATAAAGAAAAGAAGAACCATAAGTTCAATGGAATAGAATCTCTAGAAAAGGATAATGTAAAGAAGTCAAAAGTGAGTATTCTAATAAGACATTTGTGGTTTTAAAAACTTGACCTTTTGCTTTGTCTTCTAAGTATTTTTTTTTTCCACCTTTAACTTGGAATTTTGCATTTTGTAGAAACAGGAAATTGGCCAAAATTGGTCCCAAAGAGGAGTTTCTGGTTCTATCACAAAAGATGAGGAAGAGGTAGCTGAGACTCTGTATGCATTGGCAACAATGTTTCCTCACAGTGGCTCCAACCATATTATCAAGGAACTTGATGGAGAACCTTTCATGGAAAACTCCTCAGTTTTGCAGGACATGAAGGAGAATGTTAATGCTTCTCTTGAAGGTTATTTTCACCCTTCTTCTATATTATATAAGAGATTAATTTTAATGCGTCCCCGTGAGCTTAGCTCAATTGGCAGAGACATTGCATAATATATGCAGGGGCCGACCCACTTCTCTACATTTAAAATGTGTGAGCTCCAGCCACTAGGCTACCTGACAAAAAAAAAAGATTAATTTTAATGCACCATCAGCATAAAACTTTTTAAACTGTCAAATAATCAAAAACTATTATGGATATGACCCTTTTTTTTTGCCAAGTAGCCTAGTGGCTAGAGCTCACACAATTTAATTGTGGAGAAGTGGTGTGTCTGAGGTTCGAACCCCGGCCCCTGTATATAAAATGTAATATCCCTTATGACTTTTAAGGTAGATCTAGTTAAAGTCAAATATTTGTAATGATTCAAGGATTATGATTAACTCGTTCATTACATAACGATTCTTCTCTCTTACACTGACAGTGCATATCAACTACGTTCATTACATAACGATTCTTCTCTCTTACACAATACCTTTCTTTATTTATTAACTCGTTCATTTCGATTTCCCACTTTCTTTTGCCATATATTCTAGCCTCGGTTCAAGGCGAAAGTCTTTGTCGTGAAAGTTGTTTACCCGGAGAATCTTCAAAAATCACGTCTTTGAATGAAACTATTAATGGTCAAGAACTCTCTGAGAGGGCAAAGTTATTGGTGGCATCTCATAGCACAACCCCATCTACAAATTTTCAGACCATGCCTGAGACGGTTAATCACGAATATCGCGAAAAAGTTGCATTGGATGACTCTGAGTTATGTCTAGCAATGGGGTAAGTATTTTTTTTTTCAGTTCCATTCTGAAATCTATATACTTTTCACCTTTGTAATTAATAACATGTTTTGTCATCATATTCCAGATTAAATATGACTGGACAATCACAAATTTCACAATGCGAGAGGAAACCAGATGTTGAATTAGACGCGGTAGGCATTTCAATTTTCACAGTTTGAGCAAAAAATTCTGTTTGTGAGCTATTAGTACTGATGTTATTGGTACCATGCGTTCACATTTCAGGCCAGAAATTTTGATAGCAAGCAGAAACAGCAGTTGATGAATGAACAAGTAAAAAATGGTATGCTCCCACAAACAACAAATTGTCCTAAGTGGTAAATTCTTGTTTTGATCATAAAAACACAGGCTGAAGACTTTTACATCAATGTGACTAATTCTTAGTCATCTTTCTGTTGTTTCATCAGAAGGCCTTGCATTGTGGCCAGGCTTGTGTTCAGTGTCATATGATGTTAGTCATAAAAGATCATGTAAAAGATGTGCAACTCATGTTTACATCAGTCATGCGATTCGGAGTTTAGAGTCGCCAAAACAAAAAGTTATCAAAGAATCCAATCTTCGTGGGTGTCATGAAACGGGAGCAAGCGAAAGATCGAAGTATCGAGTTCTTTCGGAAGTACAAAACCTGAACAGAATGATAAATGGAGTAGTTACTTGTGATACTGTGAGGAATCCTAATGAAAGTAAGAATGGCATTCTTTTGCAGCAATGCCACTATGGTGAAATATCACAGGCTGCTTCAACATCTGGAGTATATGGTCATCAAAAGCAAGTAAGATCGAGGTTTATTTTGGTAAAGATGCTTCCCCTTATCCCCTTTCACGCCCTGATAACTATCCTTATTATGCAGAGTTTCAATCTCTTGTCCTTGTCAACTGGAAGTTATGGATTAAAGGTCGACAACAATAATTATAATAAAGTTCGAAGTAGGTTGGAACCGTCGTCAAATTTGCATGTACCTTATTTTCAGTCAATATCACAGCAGCAAAGGGTAATGCCAATTCCTACGCATCAAAGTCGTTACGCCTCGACAGTTTACCTTGATCATCTGACTGTTGTAGGACCACAGGTATTGATTAATTTGTTTTTGTCACAAGAGAAACTGAACAAACAAATTCTAGGTCCTAACTCTTCTATACTCCGTTCTTAATATATGCATAGTGTTTGAGAAGCTTGGTTAAGAGTTAGTTAGAGTTAGTTACACAACTAAACTCTATATATAGAAACACTCATGTATCATTTCATCCATCTTTTATCAAATCTAGTTTACTCTACTATGAGTCACTATGGGTATCTCCCACATGAATACACCTATGCTCTCTTTCTAGCTGATCACTATGAAATGAGGTTGTTAAAGTTTGTTGCTCACAATGAACTTAATAAACTACTCTAACAACGAAATAACATGGACATGCAATTAAATATCCCTCATAAATATATCCCTTGATCCTATTACTACAAAAGTATCTTACACTGATGTCTTTCCATGATGCTTAAATTATCTGCAGCTTCAGTTGCAACAACCTCGTTATTATGGTAGCCAATTATATGGAACTCAATATGGTTCAACAGTCTCAAATAAACAAGAGCACCAAAAATTGTGGGGGATGCAACAAGCAGCTCAAGCTAGGTCATCTGTAAATTGCAATATTACGTGGACCCAGAATCCTAATTGGCAAAATGGAAGAAATGACTATTCTGCAATGGGTCCATGTGCCCCCCAAATCATCTTTCCTCATACCCCTACATCACAAGAAATAATTGGATCCAAGATTACTTCAATCGTTGGACAACAGCAGCAGCTCATTTCCCCCATCCAAGACAAATGGGCAAGATCTTCATCTCAATTCTATATGTGA

Protein sequence

>MS.gene24158.t1

MKRGAKKQRHTNKLFFGAFQFSKKPKKQEKVRSLSAVTQMSCHVSEKQQEHPKRFKVHNNFLNGCYGASVPRKLRSAMKKRGRESILHDKEKKNHKFNGIESLEKDNVKKSKKQEIGQNWSQRGVSGSITKDEEEVAETLYALATMFPHSGSNHIIKELDGEPFMENSSVLQDMKENVNASLEASVQGESLCRESCLPGESSKITSLNETINGQELSERAKLLVASHSTTPSTNFQTMPETVNHEYREKVALDDSELCLAMGLNMTGQSQISQCERKPDVELDAARNFDSKQKQQLMNEQVKNEGLALWPGLCSVSYDVSHKRSCKRCATHVYISHAIRSLESPKQKVIKESNLRGCHETGASERSKYRVLSEVQNLNRMINGVVTCDTVRNPNESKNGILLQQCHYGEISQAASTSGVYGHQKQSFNLLSLSTGSYGLKVDNNNYNKVRSRLEPSSNLHVPYFQSISQQQRVMPIPTHQSRYASTVYLDHLTVVGPQLQLQQPRYYGSQLYGTQYGSTVSNKQEHQKLWGMQQAAQARSSVNCNITWTQNPNWQNGRNDYSAMGPCAPQIIFPHTPTSQEIIGSKITSIVGQQQQLISPIQDKWARSSSQFYM