Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24158.t1 | RHN77606.1 | 88.5 | 616 | 67 | 2 | 1 | 614 | 7 | 620 | 4.10E-303 | 1050 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24158.t1 | A0A396JH99 | 88.5 | 616 | 67 | 2 | 1 | 614 | 7 | 620 | 3.0e-303 | 1050.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene24158 | 0.802882 | 4.54E-49 | -1.69E-46 |
| MS.gene049150 | MS.gene24158 | 0.837073 | 6.44E-57 | -1.69E-46 |
| MS.gene049151 | MS.gene24158 | 0.835212 | 1.91E-56 | -1.69E-46 |
| MS.gene049153 | MS.gene24158 | 0.839791 | 1.28E-57 | -1.69E-46 |
| MS.gene049356 | MS.gene24158 | 0.867967 | 9.26E-66 | -1.69E-46 |
| MS.gene049369 | MS.gene24158 | 0.825358 | 4.90E-54 | -1.69E-46 |
| MS.gene049661 | MS.gene24158 | 0.810653 | 1.04E-50 | -1.69E-46 |
| MS.gene049662 | MS.gene24158 | 0.813436 | 2.56E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene24158 | 0.875197 | 3.72E-68 | -1.69E-46 |
| MS.gene049910 | MS.gene24158 | 0.815344 | 9.70E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene24158 | 0.885581 | 7.19E-72 | -1.69E-46 |
| MS.gene050301 | MS.gene24158 | 0.872878 | 2.27E-67 | -1.69E-46 |
| MS.gene050397 | MS.gene24158 | 0.821007 | 5.07E-53 | -1.69E-46 |
| MS.gene050406 | MS.gene24158 | 0.8095 | 1.84E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene24158 | 0.821004 | 5.08E-53 | -1.69E-46 |
| MS.gene050464 | MS.gene24158 | 0.818602 | 1.80E-52 | -1.69E-46 |
| MS.gene050529 | MS.gene24158 | 0.842557 | 2.40E-58 | -1.69E-46 |
| MS.gene050670 | MS.gene24158 | 0.831217 | 1.89E-55 | -1.69E-46 |
| MS.gene050900 | MS.gene24158 | 0.813443 | 2.55E-51 | -1.69E-46 |
| MS.gene050971 | MS.gene24158 | 0.811814 | 5.80E-51 | -1.69E-46 |
| MS.gene05101 | MS.gene24158 | 0.80837 | 3.20E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene24158 | 0.80581 | 1.11E-49 | -1.69E-46 |
| MS.gene051360 | MS.gene24158 | 0.804299 | 2.31E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene24158 | 0.820004 | 8.62E-53 | -1.69E-46 |
| MS.gene051663 | MS.gene24158 | 0.804511 | 2.09E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene24158 | 0.851145 | 1.07E-60 | -1.69E-46 |
| MS.gene051983 | MS.gene24158 | 0.808973 | 2.38E-50 | -1.69E-46 |
| MS.gene052077 | MS.gene24158 | 0.837894 | 3.97E-57 | -1.69E-46 |
| MS.gene052078 | MS.gene24158 | 0.812313 | 4.51E-51 | -1.69E-46 |
| MS.gene052178 | MS.gene24158 | 0.841704 | 4.04E-58 | -1.69E-46 |
| MS.gene052188 | MS.gene24158 | 0.877148 | 7.92E-69 | -1.69E-46 |
| MS.gene052253 | MS.gene24158 | 0.834955 | 2.22E-56 | -1.69E-46 |
| MS.gene052255 | MS.gene24158 | 0.803933 | 2.75E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene24158 | 0.854607 | 1.10E-61 | -1.69E-46 |
| MS.gene052340 | MS.gene24158 | 0.882084 | 1.40E-70 | -1.69E-46 |
| MS.gene052485 | MS.gene24158 | 0.831374 | 1.73E-55 | -1.69E-46 |
| MS.gene053073 | MS.gene24158 | 0.825485 | 4.57E-54 | -1.69E-46 |
| MS.gene05316 | MS.gene24158 | 0.881154 | 3.04E-70 | -1.69E-46 |
| MS.gene053209 | MS.gene24158 | 0.813361 | 2.66E-51 | -1.69E-46 |
| MS.gene053449 | MS.gene24158 | 0.804562 | 2.04E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene24158 | 0.810123 | 1.35E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene24158 | 0.872484 | 3.07E-67 | -1.69E-46 |
| MS.gene053559 | MS.gene24158 | 0.839128 | 1.91E-57 | -1.69E-46 |
| MS.gene053577 | MS.gene24158 | 0.804852 | 1.77E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene24158 | 0.849636 | 2.85E-60 | -1.69E-46 |
| MS.gene053928 | MS.gene24158 | 0.82372 | 1.19E-53 | -1.69E-46 |
| MS.gene054010 | MS.gene24158 | 0.804661 | 1.94E-49 | -1.69E-46 |
| MS.gene054011 | MS.gene24158 | 0.803707 | 3.07E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene24158 | 0.862109 | 6.39E-64 | -1.69E-46 |
| MS.gene054349 | MS.gene24158 | 0.842843 | 2.02E-58 | -1.69E-46 |
| MS.gene054542 | MS.gene24158 | 0.81465 | 1.38E-51 | -1.69E-46 |
| MS.gene05455 | MS.gene24158 | 0.81984 | 9.40E-53 | -1.69E-46 |
| MS.gene054930 | MS.gene24158 | 0.813129 | 2.99E-51 | -1.69E-46 |
| MS.gene054955 | MS.gene24158 | 0.828802 | 7.34E-55 | -1.69E-46 |
| MS.gene055116 | MS.gene24158 | 0.858947 | 5.81E-63 | -1.69E-46 |
| MS.gene055277 | MS.gene24158 | 0.832947 | 7.07E-56 | -1.69E-46 |
| MS.gene055390 | MS.gene24158 | 0.834652 | 2.65E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene24158 | 0.847122 | 1.41E-59 | -1.69E-46 |
| MS.gene055428 | MS.gene24158 | 0.805543 | 1.27E-49 | -1.69E-46 |
| MS.gene055533 | MS.gene24158 | 0.811428 | 7.03E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene24158 | 0.80639 | 8.42E-50 | -1.69E-46 |
| MS.gene055604 | MS.gene24158 | 0.833235 | 5.99E-56 | -1.69E-46 |
| MS.gene055666 | MS.gene24158 | 0.805491 | 1.30E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene24158 | 0.816812 | 4.56E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene24158 | 0.840241 | 9.79E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene24158 | 0.816586 | 5.12E-52 | -1.69E-46 |
| MS.gene056511 | MS.gene24158 | 0.80647 | 8.10E-50 | -1.69E-46 |
| MS.gene056609 | MS.gene24158 | 0.8343 | 3.25E-56 | -1.69E-46 |
| MS.gene056612 | MS.gene24158 | 0.833671 | 4.67E-56 | -1.69E-46 |
| MS.gene056659 | MS.gene24158 | 0.828606 | 8.19E-55 | -1.69E-46 |
| MS.gene056723 | MS.gene24158 | 0.811811 | 5.81E-51 | -1.69E-46 |
| MS.gene056902 | MS.gene24158 | 0.825138 | 5.52E-54 | -1.69E-46 |
| MS.gene05702 | MS.gene24158 | 0.820896 | 5.38E-53 | -1.69E-46 |
| MS.gene057121 | MS.gene24158 | 0.811135 | 8.15E-51 | -1.69E-46 |
| MS.gene05735 | MS.gene24158 | 0.810906 | 9.13E-51 | -1.69E-46 |
| MS.gene057396 | MS.gene24158 | 0.85092 | 1.24E-60 | -1.69E-46 |
| MS.gene057448 | MS.gene24158 | 0.875958 | 2.04E-68 | -1.69E-46 |
| MS.gene057449 | MS.gene24158 | 0.859056 | 5.38E-63 | -1.69E-46 |
| MS.gene057450 | MS.gene24158 | 0.873387 | 1.53E-67 | -1.69E-46 |
| MS.gene057469 | MS.gene24158 | 0.816326 | 5.86E-52 | -1.69E-46 |
| MS.gene057537 | MS.gene24158 | 0.848921 | 4.50E-60 | -1.69E-46 |
| MS.gene057749 | MS.gene24158 | 0.811057 | 8.47E-51 | -1.69E-46 |
| MS.gene057754 | MS.gene24158 | 0.80919 | 2.14E-50 | -1.69E-46 |
| MS.gene057796 | MS.gene24158 | 0.80395 | 2.73E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene24158 | 0.810342 | 1.21E-50 | -1.69E-46 |
| MS.gene057927 | MS.gene24158 | 0.846044 | 2.78E-59 | -1.69E-46 |
| MS.gene058002 | MS.gene24158 | 0.859068 | 5.34E-63 | -1.69E-46 |
| MS.gene058082 | MS.gene24158 | 0.804748 | 1.86E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene24158 | 0.860863 | 1.54E-63 | -1.69E-46 |
| MS.gene058142 | MS.gene24158 | 0.805474 | 1.31E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene24158 | 0.835295 | 1.82E-56 | -1.69E-46 |
| MS.gene058365 | MS.gene24158 | 0.845681 | 3.49E-59 | -1.69E-46 |
| MS.gene058433 | MS.gene24158 | 0.809737 | 1.63E-50 | -1.69E-46 |
| MS.gene05856 | MS.gene24158 | 0.802523 | 5.39E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene24158 | 0.84395 | 1.02E-58 | -1.69E-46 |
| MS.gene058845 | MS.gene24158 | 0.804498 | 2.10E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene24158 | 0.842383 | 2.67E-58 | -1.69E-46 |
| MS.gene058949 | MS.gene24158 | 0.834979 | 2.19E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene24158 | 0.874653 | 5.71E-68 | -1.69E-46 |
| MS.gene059285 | MS.gene24158 | 0.83168 | 1.46E-55 | -1.69E-46 |
| MS.gene059294 | MS.gene24158 | 0.841221 | 5.42E-58 | -1.69E-46 |
| MS.gene059366 | MS.gene24158 | 0.859514 | 3.93E-63 | -1.69E-46 |
| MS.gene059420 | MS.gene24158 | 0.823329 | 1.47E-53 | -1.69E-46 |
| MS.gene059518 | MS.gene24158 | 0.803799 | 2.93E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene24158 | 0.862014 | 6.84E-64 | -1.69E-46 |
| MS.gene05959 | MS.gene24158 | 0.822356 | 2.48E-53 | -1.69E-46 |
| MS.gene059676 | MS.gene24158 | 0.843638 | 1.24E-58 | -1.69E-46 |
| MS.gene059688 | MS.gene24158 | 0.849941 | 2.34E-60 | -1.69E-46 |
| MS.gene059692 | MS.gene24158 | 0.860785 | 1.62E-63 | -1.69E-46 |
| MS.gene059695 | MS.gene24158 | 0.853264 | 2.68E-61 | -1.69E-46 |
| MS.gene059708 | MS.gene24158 | 0.828811 | 7.31E-55 | -1.69E-46 |
| MS.gene059788 | MS.gene24158 | 0.814939 | 1.19E-51 | -1.69E-46 |
| MS.gene059807 | MS.gene24158 | 0.872412 | 3.24E-67 | -1.69E-46 |
| MS.gene05984 | MS.gene24158 | 0.85388 | 1.78E-61 | -1.69E-46 |
| MS.gene059876 | MS.gene24158 | 0.808446 | 3.08E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene24158 | 0.842923 | 1.92E-58 | -1.69E-46 |
| MS.gene059899 | MS.gene24158 | 0.808761 | 2.64E-50 | -1.69E-46 |
| MS.gene059974 | MS.gene24158 | 0.808909 | 2.46E-50 | -1.69E-46 |
| MS.gene060247 | MS.gene24158 | 0.803532 | 3.33E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene24158 | 0.840864 | 6.72E-58 | -1.69E-46 |
| MS.gene060495 | MS.gene24158 | 0.881826 | 1.74E-70 | -1.69E-46 |
| MS.gene060496 | MS.gene24158 | 0.819987 | 8.70E-53 | -1.69E-46 |
| MS.gene060804 | MS.gene24158 | 0.801381 | 9.25E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene24158 | 0.804901 | 1.73E-49 | -1.69E-46 |
| MS.gene060943 | MS.gene24158 | 0.800862 | 1.18E-48 | -1.69E-46 |
| MS.gene061002 | MS.gene24158 | 0.802455 | 5.57E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene24158 | 0.82569 | 4.09E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene24158 | 0.882363 | 1.11E-70 | -1.69E-46 |
| MS.gene061051 | MS.gene24158 | -0.89004 | 1.41E-73 | -1.69E-46 |
| MS.gene061112 | MS.gene24158 | 0.803212 | 3.88E-49 | -1.69E-46 |
| MS.gene061154 | MS.gene24158 | 0.822008 | 2.98E-53 | -1.69E-46 |
| MS.gene061159 | MS.gene24158 | 0.807215 | 5.63E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24158.t1 | MTR_1g025180 | 88.474 | 616 | 67 | 2 | 1 | 614 | 7 | 620 | 0.0 | 1108 |
| MS.gene24158.t1 | MTR_1g025180 | 87.049 | 471 | 57 | 2 | 146 | 614 | 1 | 469 | 0.0 | 828 |
| MS.gene24158.t1 | MTR_3g113840 | 41.946 | 627 | 292 | 15 | 24 | 594 | 21 | 631 | 7.43e-117 | 362 |
| MS.gene24158.t1 | MTR_3g113840 | 42.265 | 627 | 290 | 16 | 24 | 594 | 21 | 631 | 7.92e-117 | 363 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 117 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTCTTTGGGACCAATTT+TGG | 0.079863 | 1.2:-892052 | None:intergenic |
| CTGCTTGCTATCAAAATTTC+TGG | 0.147565 | 1.2:-893302 | None:intergenic |
| AGAACATCCAAAGAGATTTA+AGG | 0.181240 | 1.2:+890888 | MS.gene24158:CDS |
| CATATTGAGTTCCATATAAT+TGG | 0.201785 | 1.2:-894616 | None:intergenic |
| CATCAAGTTCCTTGATAATA+TGG | 0.221055 | 1.2:-892160 | None:intergenic |
| ATTCTATTCCATTGAACTTA+TGG | 0.246157 | 1.2:-891877 | None:intergenic |
| TGGTCCCAAAGAGGAGTTTC+TGG | 0.248234 | 1.2:+892059 | MS.gene24158:CDS |
| TTATGAACCTTAAATCTCTT+TGG | 0.248483 | 1.2:-890895 | None:intergenic |
| TATTATGGTAGCCAATTATA+TGG | 0.264395 | 1.2:+894605 | MS.gene24158:CDS |
| CCTACATCACAAGAAATAAT+TGG | 0.264657 | 1.2:+894818 | MS.gene24158:CDS |
| CTCTGAGAGGGCAAAGTTAT+TGG | 0.268120 | 1.2:+892918 | MS.gene24158:CDS |
| CACACAAATAAACTCTTCTT+TGG | 0.278338 | 1.2:+890622 | MS.gene24158:CDS |
| CAGAATCCTAATTGGCAAAA+TGG | 0.286029 | 1.2:+894737 | MS.gene24158:CDS |
| TTGCAACAACCTCGTTATTA+TGG | 0.286639 | 1.2:+894590 | MS.gene24158:CDS |
| TTCGCGACCGCGCTTCTTCA+TGG | 0.287658 | 1.2:-891825 | None:intergenic |
| TCTTTGGTTTCTTTGAGAAT+TGG | 0.294523 | 1.2:-890798 | None:intergenic |
| CTCCATTTATCATTCTGTTC+AGG | 0.303424 | 1.2:-893700 | None:intergenic |
| TCTTTGAATGAAACTATTAA+TGG | 0.309949 | 1.2:+892886 | MS.gene24158:CDS |
| CTTGATCATCTGACTGTTGT+AGG | 0.310869 | 1.2:+894115 | MS.gene24158:CDS |
| AACCTGAACAGAATGATAAA+TGG | 0.312337 | 1.2:+893698 | MS.gene24158:CDS |
| CAATTATATGGAACTCAATA+TGG | 0.313814 | 1.2:+894617 | MS.gene24158:CDS |
| TCCTTGTCAACTGGAAGTTA+TGG | 0.329835 | 1.2:+893941 | MS.gene24158:CDS |
| AACTGGAAGTTATGGATTAA+AGG | 0.337379 | 1.2:+893949 | MS.gene24158:CDS |
| TGTGATATTGACTGAAAATA+AGG | 0.338077 | 1.2:-894034 | None:intergenic |
| AACAGGAAATTGGCCAAAAT+TGG | 0.342250 | 1.2:+892039 | MS.gene24158:CDS |
| CGACTTTGATGCGTAGGAAT+TGG | 0.342514 | 1.2:-894073 | None:intergenic |
| ATGCCATTCTTACTTTCATT+AGG | 0.351418 | 1.2:-893749 | None:intergenic |
| GCTTCAACATCTGGAGTATA+TGG | 0.354662 | 1.2:+893812 | MS.gene24158:CDS |
| CGTGGACCCAGAATCCTAAT+TGG | 0.355576 | 1.2:+894729 | MS.gene24158:CDS |
| TTCATGACACCCACGAAGAT+TGG | 0.367246 | 1.2:-893627 | None:intergenic |
| CCAATTATTTCTTGTGATGT+AGG | 0.376828 | 1.2:-894818 | None:intergenic |
| ATCGAAGTATCGAGTTCTTT+CGG | 0.379175 | 1.2:+893667 | MS.gene24158:CDS |
| AATGTTAATGCTTCTCTTGA+AGG | 0.380928 | 1.2:+892230 | MS.gene24158:CDS |
| GGGTATGAGGAAAGATGATT+TGG | 0.386388 | 1.2:-894796 | None:intergenic |
| TAGAACCAGAAACTCCTCTT+TGG | 0.387132 | 1.2:-892064 | None:intergenic |
| AATCTCTTGTCCTTGTCAAC+TGG | 0.388105 | 1.2:+893932 | MS.gene24158:CDS |
| ACTTGATGGAGAACCTTTCA+TGG | 0.391137 | 1.2:+892175 | MS.gene24158:CDS |
| TCTTGCCCATTTGTCTTGGA+TGG | 0.392860 | 1.2:-894888 | None:intergenic |
| TCTTGTGATGTAGGGGTATG+AGG | 0.395732 | 1.2:-894809 | None:intergenic |
| TCCAACGATTGAAGTAATCT+TGG | 0.396123 | 1.2:-894843 | None:intergenic |
| TCACAGGCTGCTTCAACATC+TGG | 0.416938 | 1.2:+893803 | MS.gene24158:CDS |
| CTTGCCCATTTGTCTTGGAT+GGG | 0.417595 | 1.2:-894887 | None:intergenic |
| CAATTATTTCTTGTGATGTA+GGG | 0.418076 | 1.2:-894817 | None:intergenic |
| CATATTATCAAGGAACTTGA+TGG | 0.420827 | 1.2:+892161 | MS.gene24158:CDS |
| ATTATAATAAAGTTCGAAGT+AGG | 0.427697 | 1.2:+893984 | MS.gene24158:CDS |
| GGTATGAGGAAAGATGATTT+GGG | 0.428294 | 1.2:-894795 | None:intergenic |
| ATGGTCTGAAAATTTGTAGA+TGG | 0.435172 | 1.2:-892961 | None:intergenic |
| TCTGAGTTATGTCTAGCAAT+GGG | 0.437335 | 1.2:+893033 | MS.gene24158:CDS |
| TCACCTGAACGTAGCTTCCT+TGG | 0.441911 | 1.2:-891064 | None:intergenic |
| ACCGCGTCTAATTCAACATC+TGG | 0.447105 | 1.2:-893189 | None:intergenic |
| GAAGGCCTTGCATTGTGGCC+AGG | 0.455023 | 1.2:+893482 | MS.gene24158:intron |
| TATATTCTAGCCTCGGTTCA+AGG | 0.456972 | 1.2:+892811 | MS.gene24158:intron |
| TTGCCCATTTGTCTTGGATG+GGG | 0.457853 | 1.2:-894886 | None:intergenic |
| AAGAAGAACCATAAGTTCAA+TGG | 0.458103 | 1.2:+891869 | MS.gene24158:CDS |
| CTTCGTGGGTGTCATGAAAC+GGG | 0.458795 | 1.2:+893632 | MS.gene24158:CDS |
| AAGATCTTGCCCATTTGTCT+TGG | 0.472158 | 1.2:-894892 | None:intergenic |
| TCTTCGTGGGTGTCATGAAA+CGG | 0.475577 | 1.2:+893631 | MS.gene24158:CDS |
| ACAAATAAACTCTTCTTTGG+TGG | 0.476631 | 1.2:+890625 | MS.gene24158:CDS |
| TTTACATCAGTCATGCGATT+CGG | 0.476699 | 1.2:+893567 | MS.gene24158:CDS |
| TGGAATAGAATCTCTAGAAA+AGG | 0.477113 | 1.2:+891889 | MS.gene24158:CDS |
| TATTCGTGATTAACCGTCTC+AGG | 0.493289 | 1.2:-892985 | None:intergenic |
| AGAACCAGAAACTCCTCTTT+GGG | 0.495390 | 1.2:-892063 | None:intergenic |
| AGAAATGACTATTCTGCAAT+GGG | 0.495928 | 1.2:+894761 | MS.gene24158:CDS |
| TAATAAAGTTCGAAGTAGGT+TGG | 0.496971 | 1.2:+893988 | MS.gene24158:CDS |
| TCCAAGATTACTTCAATCGT+TGG | 0.497011 | 1.2:+894842 | MS.gene24158:CDS |
| GTCAATATCACAGCAGCAAA+GGG | 0.498383 | 1.2:+894045 | MS.gene24158:CDS |
| TGGTCTGAAAATTTGTAGAT+GGG | 0.502055 | 1.2:-892960 | None:intergenic |
| TATTCCAGATTAAATATGAC+TGG | 0.510410 | 1.2:+893135 | MS.gene24158:intron |
| AATCCTAATGAAAGTAAGAA+TGG | 0.512870 | 1.2:+893746 | MS.gene24158:CDS |
| GTTCCAAGGAAGCTACGTTC+AGG | 0.516402 | 1.2:+891061 | MS.gene24158:CDS |
| AGCTGAGACTCTGTATGCAT+TGG | 0.533537 | 1.2:+892109 | MS.gene24158:CDS |
| AAGTTCCTTGATAATATGGT+TGG | 0.535952 | 1.2:-892156 | None:intergenic |
| AAGAAATGACTATTCTGCAA+TGG | 0.540060 | 1.2:+894760 | MS.gene24158:CDS |
| CTCTGAGTTATGTCTAGCAA+TGG | 0.542092 | 1.2:+893032 | MS.gene24158:CDS |
| CATCAGAAGGCCTTGCATTG+TGG | 0.543118 | 1.2:+893477 | MS.gene24158:intron |
| TGCCCATTTGTCTTGGATGG+GGG | 0.548139 | 1.2:-894885 | None:intergenic |
| TATGACACTGAACACAAGCC+TGG | 0.552462 | 1.2:-893500 | None:intergenic |
| TATCACAAAAGATGAGGAAG+AGG | 0.554801 | 1.2:+892085 | MS.gene24158:CDS |
| TGTCGTGAAAGTTGTTTACC+CGG | 0.562028 | 1.2:+892844 | MS.gene24158:CDS |
| GTATGAGGAAAGATGATTTG+GGG | 0.565026 | 1.2:-894794 | None:intergenic |
| AATTATTTCTTGTGATGTAG+GGG | 0.566909 | 1.2:-894816 | None:intergenic |
| TGAGAGGGCAAAGTTATTGG+TGG | 0.568374 | 1.2:+892921 | MS.gene24158:CDS |
| ACAAGCCTGGCCACAATGCA+AGG | 0.568663 | 1.2:-893487 | None:intergenic |
| TGCAACAAGCAGCTCAAGCT+AGG | 0.574393 | 1.2:+894684 | MS.gene24158:CDS |
| ATCAAAGAATCCAATCTTCG+TGG | 0.575463 | 1.2:+893617 | MS.gene24158:CDS |
| GTGATTAACCGTCTCAGGCA+TGG | 0.580444 | 1.2:-892980 | None:intergenic |
| CTACAACAGTCAGATGATCA+AGG | 0.580745 | 1.2:-894114 | None:intergenic |
| GCGTAACGACTTTGATGCGT+AGG | 0.580775 | 1.2:-894079 | None:intergenic |
| AGTCAATATCACAGCAGCAA+AGG | 0.582576 | 1.2:+894044 | MS.gene24158:CDS |
| TGGCTCCAACCATATTATCA+AGG | 0.585343 | 1.2:+892151 | MS.gene24158:CDS |
| GCTATGGTGCTTCTGTTCCA+AGG | 0.586786 | 1.2:+891047 | MS.gene24158:CDS |
| AAGACTTTCGCCTTGAACCG+AGG | 0.587506 | 1.2:-892821 | None:intergenic |
| CCACTATGGTGAAATATCAC+AGG | 0.588135 | 1.2:+893787 | MS.gene24158:CDS |
| TCTGACTGTTGTAGGACCAC+AGG | 0.589844 | 1.2:+894123 | MS.gene24158:CDS |
| CTGTAAATTGCAATATTACG+TGG | 0.599616 | 1.2:+894711 | MS.gene24158:CDS |
| CACAAATTTCACAATGCGAG+AGG | 0.599720 | 1.2:+893163 | MS.gene24158:CDS |
| TCAAAGAATCCAATCTTCGT+GGG | 0.606393 | 1.2:+893618 | MS.gene24158:CDS |
| TATGAGGAAAGATGATTTGG+GGG | 0.607071 | 1.2:-894793 | None:intergenic |
| TCCATAACTTCCAGTTGACA+AGG | 0.614158 | 1.2:-893942 | None:intergenic |
| TGGTTCTATCACAAAAGATG+AGG | 0.614760 | 1.2:+892079 | MS.gene24158:CDS |
| TGGTCAAGAACTCTCTGAGA+GGG | 0.620494 | 1.2:+892906 | MS.gene24158:CDS |
| GGCCAAAATTGGTCCCAAAG+AGG | 0.643574 | 1.2:+892050 | MS.gene24158:CDS |
| CCTGTGATATTTCACCATAG+TGG | 0.644154 | 1.2:-893787 | None:intergenic |
| ATGATCAAGGTAAACTGTCG+AGG | 0.644271 | 1.2:-894101 | None:intergenic |
| AAGACTCAAAACATGAAGCG+TGG | 0.654533 | 1.2:+890583 | None:intergenic |
| CTTCATGTCCTGCAAAACTG+AGG | 0.654726 | 1.2:-892204 | None:intergenic |
| GGTCTGAAAATTTGTAGATG+GGG | 0.656195 | 1.2:-892959 | None:intergenic |
| CTGAGTTATGTCTAGCAATG+GGG | 0.684708 | 1.2:+893034 | MS.gene24158:CDS |
| GGTACATGCAAATTTGACGA+CGG | 0.685039 | 1.2:-894013 | None:intergenic |
| TAGTTACTTGTGATACTGTG+AGG | 0.687877 | 1.2:+893723 | MS.gene24158:CDS |
| ATGGTCAAGAACTCTCTGAG+AGG | 0.701193 | 1.2:+892905 | MS.gene24158:CDS |
| GCAACAATGTTTCCTCACAG+TGG | 0.705825 | 1.2:+892131 | MS.gene24158:CDS |
| ATATGGTTGGAGCCACTGTG+AGG | 0.708280 | 1.2:-892143 | None:intergenic |
| ATTACAGCCATGAAGAAGCG+CGG | 0.721076 | 1.2:+891818 | MS.gene24158:intron |
| ACCAGATGTTGAATTAGACG+CGG | 0.733787 | 1.2:+893188 | MS.gene24158:CDS |
| AATTGGCTACCATAATAACG+AGG | 0.777976 | 1.2:-894599 | None:intergenic |
| ATGAGGAAAGATGATTTGGG+GGG | 0.787407 | 1.2:-894792 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAAATTTTAAACTGTAT+GGG | + | chr1.2:891618-891637 | MS.gene24158:intron | 10.0% |
| !!! | TTATAAAATTTTAAACTGTA+TGG | + | chr1.2:891617-891636 | MS.gene24158:intron | 10.0% |
| !!! | TTTTCATTTCTAAATTTTTA+TGG | + | chr1.2:890961-890980 | MS.gene24158:intron | 10.0% |
| !! | AAACATGTTATTAATTACAA+AGG | - | chr1.2:893107-893126 | None:intergenic | 15.0% |
| !! | CAAATAATCAAAAACTATTA+TGG | + | chr1.2:892462-892481 | MS.gene24158:intron | 15.0% |
| !! | CTTAATATGAATTATTCAAA+TGG | - | chr1.2:891414-891433 | None:intergenic | 15.0% |
| !! | TCTTATATAATATAGAAGAA+GGG | - | chr1.2:892265-892284 | None:intergenic | 15.0% |
| !!! | AATGTTATTTTCAATTTACA+GGG | + | chr1.2:891529-891548 | MS.gene24158:intron | 15.0% |
| !!! | ATATTACATTTTATATACAG+GGG | - | chr1.2:892580-892599 | None:intergenic | 15.0% |
| !!! | ATTAATCTTTTTTTTTTGTC+AGG | - | chr1.2:892406-892425 | None:intergenic | 15.0% |
| !!! | GATATTACATTTTATATACA+GGG | - | chr1.2:892581-892600 | None:intergenic | 15.0% |
| !!! | TAATGTTATTTTCAATTTAC+AGG | + | chr1.2:891528-891547 | MS.gene24158:intron | 15.0% |
| !!! | TGTTTTTGTTAGTATATTAT+AGG | + | chr1.2:891462-891481 | MS.gene24158:intron | 15.0% |
| !! | AAACTAGATTTGATAAAAGA+TGG | - | chr1.2:894324-894343 | None:intergenic | 20.0% |
| !! | AAAGTATATAGATTTCAGAA+TGG | - | chr1.2:893081-893100 | None:intergenic | 20.0% |
| !! | ACGAGTTAATAAATAAAGAA+AGG | - | chr1.2:892762-892781 | None:intergenic | 20.0% |
| !! | ATAATTCATATTAAGCAGTT+AGG | + | chr1.2:891419-891438 | MS.gene24158:intron | 20.0% |
| !! | ATGAATGAACAAGTAAAAAA+TGG | + | chr1.2:893337-893356 | MS.gene24158:CDS | 20.0% |
| !! | ATTATAATAAAGTTCGAAGT+AGG | + | chr1.2:893984-894003 | MS.gene24158:CDS | 20.0% |
| !! | CAAATATTTGTAATGATTCA+AGG | + | chr1.2:892634-892653 | MS.gene24158:intron | 20.0% |
| !! | CAAATTAACATAAACAAACA+AGG | - | chr1.2:891568-891587 | None:intergenic | 20.0% |
| !! | CTCTTATATAATATAGAAGA+AGG | - | chr1.2:892266-892285 | None:intergenic | 20.0% |
| !! | GTTTGCCATTAAAAAAAAAA+TGG | - | chr1.2:891357-891376 | None:intergenic | 20.0% |
| !! | TCTTTGAATGAAACTATTAA+TGG | + | chr1.2:892886-892905 | MS.gene24158:CDS | 20.0% |
| !!! | CTTTCTTTATATTTTTCCAT+AGG | + | chr1.2:891149-891168 | MS.gene24158:intron | 20.0% |
| !!! | GGATATTACATTTTATATAC+AGG | - | chr1.2:892582-892601 | None:intergenic | 20.0% |
| !!! | TAAGATACTTTTGTAGTAAT+AGG | - | chr1.2:894527-894546 | None:intergenic | 20.0% |
| !!! | TCTTTGATAACTTTTTGTTT+TGG | - | chr1.2:893605-893624 | None:intergenic | 20.0% |
| !!! | TTTAAAAAGTTTTATGCTGA+TGG | - | chr1.2:892438-892457 | None:intergenic | 20.0% |
| !!! | TTTTGTTCTTAGTTTTTGAA+TGG | + | chr1.2:891022-891041 | MS.gene24158:intron | 20.0% |
| !!! | TTTTTTAATGGCAAACATTT+TGG | + | chr1.2:891361-891380 | MS.gene24158:intron | 20.0% |
| ! | AAAACAAGAATTTACCACTT+AGG | - | chr1.2:893388-893407 | None:intergenic | 25.0% |
| ! | AAACTGAACAAACAAATTCT+AGG | + | chr1.2:894175-894194 | MS.gene24158:intron | 25.0% |
| ! | AACAAATTAATCAATACCTG+TGG | - | chr1.2:894142-894161 | None:intergenic | 25.0% |
| ! | AATATATGGCAAAAGAAAGT+GGG | - | chr1.2:892797-892816 | None:intergenic | 25.0% |
| ! | AATCCTAATGAAAGTAAGAA+TGG | + | chr1.2:893746-893765 | MS.gene24158:CDS | 25.0% |
| ! | AATGCAAAATTCCAAGTTAA+AGG | - | chr1.2:892012-892031 | None:intergenic | 25.0% |
| ! | ATCAAGGGATATATTTATGA+GGG | - | chr1.2:894504-894523 | None:intergenic | 25.0% |
| ! | ATCTACCTTAAAAGTCATAA+GGG | - | chr1.2:892603-892622 | None:intergenic | 25.0% |
| ! | ATTCTATTCCATTGAACTTA+TGG | - | chr1.2:891880-891899 | None:intergenic | 25.0% |
| ! | ATTGAAAATAACATTATCCG+CGG | - | chr1.2:891524-891543 | None:intergenic | 25.0% |
| ! | CAATTATATGGAACTCAATA+TGG | + | chr1.2:894617-894636 | MS.gene24158:CDS | 25.0% |
| ! | CACTATGCATATATTAAGAA+CGG | - | chr1.2:894219-894238 | None:intergenic | 25.0% |
| ! | CATAATAAGGATAGTTATCA+GGG | - | chr1.2:893903-893922 | None:intergenic | 25.0% |
| ! | CATATTGAGTTCCATATAAT+TGG | - | chr1.2:894619-894638 | None:intergenic | 25.0% |
| ! | GTATTCTAATAAGACATTTG+TGG | + | chr1.2:891936-891955 | MS.gene24158:intron | 25.0% |
| ! | TATTATGGTAGCCAATTATA+TGG | + | chr1.2:894605-894624 | MS.gene24158:CDS | 25.0% |
| ! | TATTCCAGATTAAATATGAC+TGG | + | chr1.2:893135-893154 | MS.gene24158:intron | 25.0% |
| ! | TTAAAAAAAAAATGGCCCTT+TGG | - | chr1.2:891349-891368 | None:intergenic | 25.0% |
| ! | TTATGAACCTTAAATCTCTT+TGG | - | chr1.2:890898-890917 | None:intergenic | 25.0% |
| !! | AATATCCCTTATGACTTTTA+AGG | + | chr1.2:892595-892614 | MS.gene24158:intron | 25.0% |
| !! | AATTATTTCTTGTGATGTAG+GGG | - | chr1.2:894819-894838 | None:intergenic | 25.0% |
| !! | ACATTTTAAATGTAGAGAAG+TGG | - | chr1.2:892361-892380 | None:intergenic | 25.0% |
| !! | ATTTTGCATTTTGTAGAAAC+AGG | + | chr1.2:892022-892041 | MS.gene24158:intron | 25.0% |
| !! | ATTTTGTAGAAACAGGAAAT+TGG | + | chr1.2:892029-892048 | MS.gene24158:intron | 25.0% |
| !! | CAATTATTTCTTGTGATGTA+GGG | - | chr1.2:894820-894839 | None:intergenic | 25.0% |
| !! | CATTTTAAATGTAGAGAAGT+GGG | - | chr1.2:892360-892379 | None:intergenic | 25.0% |
| !! | CTTTTCTTTATCATGTAAGA+TGG | - | chr1.2:891852-891871 | None:intergenic | 25.0% |
| !! | TGTGATATTGACTGAAAATA+AGG | - | chr1.2:894037-894056 | None:intergenic | 25.0% |
| !! | TTTTGTAGTAATAGGATCAA+GGG | - | chr1.2:894519-894538 | None:intergenic | 25.0% |
| !!! | AAGGGCCATTTTTTTTTTAA+TGG | + | chr1.2:891349-891368 | MS.gene24158:intron | 25.0% |
| !!! | TGTTTTGATCATAAAAACAC+AGG | + | chr1.2:893402-893421 | MS.gene24158:intron | 25.0% |
| !!! | TTTTTTTTCCACCTTTAACT+TGG | + | chr1.2:891998-892017 | MS.gene24158:intron | 25.0% |
| AAACAACAAATTGTCCTAAG+TGG | + | chr1.2:893371-893390 | MS.gene24158:intron | 30.0% | |
| AACCTGAACAGAATGATAAA+TGG | + | chr1.2:893698-893717 | MS.gene24158:CDS | 30.0% | |
| AAGAAATGACTATTCTGCAA+TGG | + | chr1.2:894760-894779 | MS.gene24158:CDS | 30.0% | |
| AAGAAGAACCATAAGTTCAA+TGG | + | chr1.2:891869-891888 | MS.gene24158:CDS | 30.0% | |
| AATGTTAATGCTTCTCTTGA+AGG | + | chr1.2:892230-892249 | MS.gene24158:CDS | 30.0% | |
| ACAAATAAACTCTTCTTTGG+TGG | + | chr1.2:890625-890644 | MS.gene24158:CDS | 30.0% | |
| ACAATTTAATTGTGGAGAAG+TGG | + | chr1.2:892531-892550 | MS.gene24158:intron | 30.0% | |
| ACATTGCATAATATATGCAG+GGG | + | chr1.2:892330-892349 | MS.gene24158:intron | 30.0% | |
| ACCAAACAAAACTCATTTGT+CGG | + | chr1.2:890683-890702 | MS.gene24158:intron | 30.0% | |
| ACTCTAACAACGAAATAACA+TGG | + | chr1.2:894462-894481 | MS.gene24158:intron | 30.0% | |
| AGAAATGACTATTCTGCAAT+GGG | + | chr1.2:894761-894780 | MS.gene24158:CDS | 30.0% | |
| AGAACATCCAAAGAGATTTA+AGG | + | chr1.2:890888-890907 | MS.gene24158:CDS | 30.0% | |
| AGACATTGCATAATATATGC+AGG | + | chr1.2:892328-892347 | MS.gene24158:intron | 30.0% | |
| ATGCCATTCTTACTTTCATT+AGG | - | chr1.2:893752-893771 | None:intergenic | 30.0% | |
| ATGGTCTGAAAATTTGTAGA+TGG | - | chr1.2:892964-892983 | None:intergenic | 30.0% | |
| CACACAAATAAACTCTTCTT+TGG | + | chr1.2:890622-890641 | MS.gene24158:CDS | 30.0% | |
| CATATTATCAAGGAACTTGA+TGG | + | chr1.2:892161-892180 | MS.gene24158:CDS | 30.0% | |
| CCTACATCACAAGAAATAAT+TGG | + | chr1.2:894818-894837 | MS.gene24158:CDS | 30.0% | |
| CTGTAAATTGCAATATTACG+TGG | + | chr1.2:894711-894730 | MS.gene24158:CDS | 30.0% | |
| GAATATATGGCAAAAGAAAG+TGG | - | chr1.2:892798-892817 | None:intergenic | 30.0% | |
| GACATTGCATAATATATGCA+GGG | + | chr1.2:892329-892348 | MS.gene24158:intron | 30.0% | |
| GATCAAGGGATATATTTATG+AGG | - | chr1.2:894505-894524 | None:intergenic | 30.0% | |
| GATCTACCTTAAAAGTCATA+AGG | - | chr1.2:892604-892623 | None:intergenic | 30.0% | |
| GATTGAAACTCTGCATAATA+AGG | - | chr1.2:893916-893935 | None:intergenic | 30.0% | |
| GCATAATAAGGATAGTTATC+AGG | - | chr1.2:893904-893923 | None:intergenic | 30.0% | |
| TAAAACTCATAGAGTTCCTA+TGG | - | chr1.2:891168-891187 | None:intergenic | 30.0% | |
| TAATAAAGTTCGAAGTAGGT+TGG | + | chr1.2:893988-894007 | MS.gene24158:CDS | 30.0% | |
| TACTTAGAAGACAAAGCAAA+AGG | - | chr1.2:891976-891995 | None:intergenic | 30.0% | |
| TGCAGATAATTTAAGCATCA+TGG | - | chr1.2:894563-894582 | None:intergenic | 30.0% | |
| TGGTCTGAAAATTTGTAGAT+GGG | - | chr1.2:892963-892982 | None:intergenic | 30.0% | |
| TTCATGGCTGTAATTTCAAA+AGG | - | chr1.2:891812-891831 | None:intergenic | 30.0% | |
| TTGTCCAGTCATATTTAATC+TGG | - | chr1.2:893142-893161 | None:intergenic | 30.0% | |
| ! | AACTGGAAGTTATGGATTAA+AGG | + | chr1.2:893949-893968 | MS.gene24158:CDS | 30.0% |
| ! | AAGTTCCTTGATAATATGGT+TGG | - | chr1.2:892159-892178 | None:intergenic | 30.0% |
| ! | AGTAAGATCGAGGTTTATTT+TGG | + | chr1.2:893847-893866 | MS.gene24158:intron | 30.0% |
| ! | ATTTTGCCAATTAGGATTCT+GGG | - | chr1.2:894738-894757 | None:intergenic | 30.0% |
| ! | CATCAAGTTCCTTGATAATA+TGG | - | chr1.2:892163-892182 | None:intergenic | 30.0% |
| ! | CCAATTATTTCTTGTGATGT+AGG | - | chr1.2:894821-894840 | None:intergenic | 30.0% |
| ! | CTTTTGTAGTAATAGGATCA+AGG | - | chr1.2:894520-894539 | None:intergenic | 30.0% |
| ! | TAGTTTTTGAATGGATGCTA+TGG | + | chr1.2:891031-891050 | MS.gene24158:intron | 30.0% |
| ! | TCTTTGGTTTCTTTGAGAAT+TGG | - | chr1.2:890801-890820 | None:intergenic | 30.0% |
| ! | TGGAATAGAATCTCTAGAAA+AGG | + | chr1.2:891889-891908 | MS.gene24158:CDS | 30.0% |
| ! | TTTCTTCCATTTTGCCAATT+AGG | - | chr1.2:894746-894765 | None:intergenic | 30.0% |
| !! | CTAACTTTTTCTTGCTTCTT+TGG | - | chr1.2:890817-890836 | None:intergenic | 30.0% |
| !! | GCTATTAGTACTGATGTTAT+TGG | + | chr1.2:893257-893276 | MS.gene24158:intron | 30.0% |
| !! | TAGGACAATTTGTTGTTTGT+GGG | - | chr1.2:893369-893388 | None:intergenic | 30.0% |
| !! | TTAGGACAATTTGTTGTTTG+TGG | - | chr1.2:893370-893389 | None:intergenic | 30.0% |
| !!! | TACTTACAAAAGTGCTTTTG+TGG | + | chr1.2:891679-891698 | MS.gene24158:intron | 30.0% |
| AACAGGAAATTGGCCAAAAT+TGG | + | chr1.2:892039-892058 | MS.gene24158:CDS | 35.0% | |
| AATTGGCTACCATAATAACG+AGG | - | chr1.2:894602-894621 | None:intergenic | 35.0% | |
| ACTCTACTATGAGTCACTAT+GGG | + | chr1.2:894344-894363 | MS.gene24158:intron | 35.0% | |
| AGGCTACTTGGCAAAAAAAA+AGG | - | chr1.2:892495-892514 | None:intergenic | 35.0% | |
| ATATCGCGAAAAAGTTGCAT+TGG | + | chr1.2:893005-893024 | MS.gene24158:CDS | 35.0% | |
| ATCAAAAGCAAGTAAGATCG+AGG | + | chr1.2:893837-893856 | MS.gene24158:intron | 35.0% | |
| ATCAAAGAATCCAATCTTCG+TGG | + | chr1.2:893617-893636 | MS.gene24158:CDS | 35.0% | |
| CAGAATCCTAATTGGCAAAA+TGG | + | chr1.2:894737-894756 | MS.gene24158:CDS | 35.0% | |
| CTCCATTTATCATTCTGTTC+AGG | - | chr1.2:893703-893722 | None:intergenic | 35.0% | |
| GAGCTCACACAATTTAATTG+TGG | + | chr1.2:892523-892542 | MS.gene24158:intron | 35.0% | |
| GCAAAATTCCAAGTTAAAGG+TGG | - | chr1.2:892009-892028 | None:intergenic | 35.0% | |
| GGCTACTTGGCAAAAAAAAA+GGG | - | chr1.2:892494-892513 | None:intergenic | 35.0% | |
| GGTATGAGGAAAGATGATTT+GGG | - | chr1.2:894798-894817 | None:intergenic | 35.0% | |
| GGTCTGAAAATTTGTAGATG+GGG | - | chr1.2:892962-892981 | None:intergenic | 35.0% | |
| GTATGAGGAAAGATGATTTG+GGG | - | chr1.2:894797-894816 | None:intergenic | 35.0% | |
| TACTCTACTATGAGTCACTA+TGG | + | chr1.2:894343-894362 | MS.gene24158:intron | 35.0% | |
| TAGCTGATCACTATGAAATG+AGG | + | chr1.2:894401-894420 | MS.gene24158:intron | 35.0% | |
| TAGTTACTTGTGATACTGTG+AGG | + | chr1.2:893723-893742 | MS.gene24158:CDS | 35.0% | |
| TATCACAAAAGATGAGGAAG+AGG | + | chr1.2:892085-892104 | MS.gene24158:CDS | 35.0% | |
| TCAAAGAATCCAATCTTCGT+GGG | + | chr1.2:893618-893637 | MS.gene24158:CDS | 35.0% | |
| TCCAACGATTGAAGTAATCT+TGG | - | chr1.2:894846-894865 | None:intergenic | 35.0% | |
| TCCAAGATTACTTCAATCGT+TGG | + | chr1.2:894842-894861 | MS.gene24158:CDS | 35.0% | |
| TCTGAGTTATGTCTAGCAAT+GGG | + | chr1.2:893033-893052 | MS.gene24158:CDS | 35.0% | |
| TTAAATGTAGAGAAGTGGGT+CGG | - | chr1.2:892356-892375 | None:intergenic | 35.0% | |
| TTTACATCAGTCATGCGATT+CGG | + | chr1.2:893567-893586 | MS.gene24158:CDS | 35.0% | |
| TTTGCCATATATTCTAGCCT+CGG | + | chr1.2:892804-892823 | MS.gene24158:intron | 35.0% | |
| ! | CATTTTGCCAATTAGGATTC+TGG | - | chr1.2:894739-894758 | None:intergenic | 35.0% |
| ! | TACATTTTATATACAGGGGC+CGG | - | chr1.2:892576-892595 | None:intergenic | 35.0% |
| ! | TATGAGGAAAGATGATTTGG+GGG | - | chr1.2:894796-894815 | None:intergenic | 35.0% |
| ! | TCACGAATAATTTTTGTCCG+CGG | + | chr1.2:891504-891523 | MS.gene24158:intron | 35.0% |
| ! | TGGTTCTATCACAAAAGATG+AGG | + | chr1.2:892079-892098 | MS.gene24158:CDS | 35.0% |
| !! | AACAAGAGCACCAAAAATTG+TGG | + | chr1.2:894657-894676 | MS.gene24158:CDS | 35.0% |
| !! | ACAAGAGCACCAAAAATTGT+GGG | + | chr1.2:894658-894677 | MS.gene24158:CDS | 35.0% |
| !! | AGCAGCTTTTGATTAACCAA+AGG | + | chr1.2:891330-891349 | MS.gene24158:intron | 35.0% |
| !! | ATCGAAGTATCGAGTTCTTT+CGG | + | chr1.2:893667-893686 | MS.gene24158:CDS | 35.0% |
| !! | CGTGATTTTTGAAGATTCTC+CGG | - | chr1.2:892866-892885 | None:intergenic | 35.0% |
| !! | CTGCTTGCTATCAAAATTTC+TGG | - | chr1.2:893305-893324 | None:intergenic | 35.0% |
| !! | CTTTCTGTTGTTTCATCAGA+AGG | + | chr1.2:893464-893483 | MS.gene24158:intron | 35.0% |
| !! | GCAGCTTTTGATTAACCAAA+GGG | + | chr1.2:891331-891350 | MS.gene24158:intron | 35.0% |
| !! | GTGATTTTTGAAGATTCTCC+GGG | - | chr1.2:892865-892884 | None:intergenic | 35.0% |
| !!! | ACCGACAAATGAGTTTTGTT+TGG | - | chr1.2:890687-890706 | None:intergenic | 35.0% |
| AAGATCTTGCCCATTTGTCT+TGG | - | chr1.2:894895-894914 | None:intergenic | 40.0% | |
| AATCTCTTGTCCTTGTCAAC+TGG | + | chr1.2:893932-893951 | MS.gene24158:CDS | 40.0% | |
| ACCAGATGTTGAATTAGACG+CGG | + | chr1.2:893188-893207 | MS.gene24158:CDS | 40.0% | |
| ACTTGATGGAGAACCTTTCA+TGG | + | chr1.2:892175-892194 | MS.gene24158:CDS | 40.0% | |
| AGAACCAGAAACTCCTCTTT+GGG | - | chr1.2:892066-892085 | None:intergenic | 40.0% | |
| AGAGCATAGGTGTATTCATG+TGG | - | chr1.2:894376-894395 | None:intergenic | 40.0% | |
| AGTCAATATCACAGCAGCAA+AGG | + | chr1.2:894044-894063 | MS.gene24158:CDS | 40.0% | |
| ATAGTTATCAGGGCGTGAAA+GGG | - | chr1.2:893893-893912 | None:intergenic | 40.0% | |
| ATGATCAAGGTAAACTGTCG+AGG | - | chr1.2:894104-894123 | None:intergenic | 40.0% | |
| CACAAATTTCACAATGCGAG+AGG | + | chr1.2:893163-893182 | MS.gene24158:CDS | 40.0% | |
| CCACTATGGTGAAATATCAC+AGG | + | chr1.2:893787-893806 | MS.gene24158:CDS | 40.0% | |
| CCTGTGATATTTCACCATAG+TGG | - | chr1.2:893790-893809 | None:intergenic | 40.0% | |
| CTACAACAGTCAGATGATCA+AGG | - | chr1.2:894117-894136 | None:intergenic | 40.0% | |
| CTCTGAGTTATGTCTAGCAA+TGG | + | chr1.2:893032-893051 | MS.gene24158:CDS | 40.0% | |
| CTGAGTTATGTCTAGCAATG+GGG | + | chr1.2:893034-893053 | MS.gene24158:CDS | 40.0% | |
| CTTGATCATCTGACTGTTGT+AGG | + | chr1.2:894115-894134 | MS.gene24158:CDS | 40.0% | |
| GAACGGAGTATAGAAGAGTT+AGG | - | chr1.2:894202-894221 | None:intergenic | 40.0% | |
| GAGCATAGGTGTATTCATGT+GGG | - | chr1.2:894375-894394 | None:intergenic | 40.0% | |
| GGGTATGAGGAAAGATGATT+TGG | - | chr1.2:894799-894818 | None:intergenic | 40.0% | |
| GGTACATGCAAATTTGACGA+CGG | - | chr1.2:894016-894035 | None:intergenic | 40.0% | |
| GTCAATATCACAGCAGCAAA+GGG | + | chr1.2:894045-894064 | MS.gene24158:CDS | 40.0% | |
| TAGAACCAGAAACTCCTCTT+TGG | - | chr1.2:892067-892086 | None:intergenic | 40.0% | |
| TATATTCTAGCCTCGGTTCA+AGG | + | chr1.2:892811-892830 | MS.gene24158:intron | 40.0% | |
| TATTCGTGATTAACCGTCTC+AGG | - | chr1.2:892988-893007 | None:intergenic | 40.0% | |
| TCCATAACTTCCAGTTGACA+AGG | - | chr1.2:893945-893964 | None:intergenic | 40.0% | |
| TCCTTGTCAACTGGAAGTTA+TGG | + | chr1.2:893941-893960 | MS.gene24158:CDS | 40.0% | |
| TGAACCGAGGCTAGAATATA+TGG | - | chr1.2:892811-892830 | None:intergenic | 40.0% | |
| TGCATAGTGTTTGAGAAGCT+TGG | + | chr1.2:894230-894249 | MS.gene24158:intron | 40.0% | |
| TGGCTCCAACCATATTATCA+AGG | + | chr1.2:892151-892170 | MS.gene24158:CDS | 40.0% | |
| TGTCGTGAAAGTTGTTTACC+CGG | + | chr1.2:892844-892863 | MS.gene24158:CDS | 40.0% | |
| ! | ACATTTTATATACAGGGGCC+GGG | - | chr1.2:892575-892594 | None:intergenic | 40.0% |
| ! | ACTGAGGAGTTTTCCATGAA+AGG | - | chr1.2:892191-892210 | None:intergenic | 40.0% |
| ! | ATCAGCTAGAAAGAGAGCAT+AGG | - | chr1.2:894389-894408 | None:intergenic | 40.0% |
| ! | ATGAGGAAAGATGATTTGGG+GGG | - | chr1.2:894795-894814 | None:intergenic | 40.0% |
| ! | GCTTCAACATCTGGAGTATA+TGG | + | chr1.2:893812-893831 | MS.gene24158:CDS | 40.0% |
| !! | AAGAGCACCAAAAATTGTGG+GGG | + | chr1.2:894660-894679 | MS.gene24158:CDS | 40.0% |
| !! | CAAGAGCACCAAAAATTGTG+GGG | + | chr1.2:894659-894678 | MS.gene24158:CDS | 40.0% |
| !!! | TTTTTTGCCAAGTAGCCTAG+TGG | + | chr1.2:892497-892516 | MS.gene24158:intron | 40.0% |
| !!! | TTTTTTGTCAGGTAGCCTAG+TGG | - | chr1.2:892395-892414 | None:intergenic | 40.0% |
| ACCGCGTCTAATTCAACATC+TGG | - | chr1.2:893192-893211 | None:intergenic | 45.0% | |
| AGCTGAGACTCTGTATGCAT+TGG | + | chr1.2:892109-892128 | MS.gene24158:CDS | 45.0% | |
| ATGGTCAAGAACTCTCTGAG+AGG | + | chr1.2:892905-892924 | MS.gene24158:CDS | 45.0% | |
| ATTACAGCCATGAAGAAGCG+CGG | + | chr1.2:891818-891837 | MS.gene24158:intron | 45.0% | |
| CGACTTTGATGCGTAGGAAT+TGG | - | chr1.2:894076-894095 | None:intergenic | 45.0% | |
| CTTCATGTCCTGCAAAACTG+AGG | - | chr1.2:892207-892226 | None:intergenic | 45.0% | |
| CTTGCCCATTTGTCTTGGAT+GGG | - | chr1.2:894890-894909 | None:intergenic | 45.0% | |
| GATAGTTATCAGGGCGTGAA+AGG | - | chr1.2:893894-893913 | None:intergenic | 45.0% | |
| GATGTTGAATTAGACGCGGT+AGG | + | chr1.2:893192-893211 | MS.gene24158:intron | 45.0% | |
| GCAACAATGTTTCCTCACAG+TGG | + | chr1.2:892131-892150 | MS.gene24158:CDS | 45.0% | |
| GTACCATGCGTTCACATTTC+AGG | + | chr1.2:893279-893298 | MS.gene24158:intron | 45.0% | |
| TAGTTATCAGGGCGTGAAAG+GGG | - | chr1.2:893892-893911 | None:intergenic | 45.0% | |
| TATGACACTGAACACAAGCC+TGG | - | chr1.2:893503-893522 | None:intergenic | 45.0% | |
| TCTTGCCCATTTGTCTTGGA+TGG | - | chr1.2:894891-894910 | None:intergenic | 45.0% | |
| TGAGAGGGCAAAGTTATTGG+TGG | + | chr1.2:892921-892940 | MS.gene24158:CDS | 45.0% | |
| TGCCAATTGAGCTAAGCTCA+CGG | - | chr1.2:892307-892326 | None:intergenic | 45.0% | |
| TTCATGACACCCACGAAGAT+TGG | - | chr1.2:893630-893649 | None:intergenic | 45.0% | |
| TTCCCCCATCCAAGACAAAT+GGG | + | chr1.2:894883-894902 | MS.gene24158:CDS | 45.0% | |
| TTGCCCATTTGTCTTGGATG+GGG | - | chr1.2:894889-894908 | None:intergenic | 45.0% | |
| TTTCCCCCATCCAAGACAAA+TGG | + | chr1.2:894882-894901 | MS.gene24158:CDS | 45.0% | |
| ! | CATTTTATATACAGGGGCCG+GGG | - | chr1.2:892574-892593 | None:intergenic | 45.0% |
| ! | CTCAGTTTTGCAGGACATGA+AGG | + | chr1.2:892205-892224 | MS.gene24158:CDS | 45.0% |
| ! | CTCTGAGAGGGCAAAGTTAT+TGG | + | chr1.2:892918-892937 | MS.gene24158:CDS | 45.0% |
| ! | CTTTTGCAGCAATGCCACTA+TGG | + | chr1.2:893773-893792 | MS.gene24158:CDS | 45.0% |
| ! | GGAAAACTCCTCAGTTTTGC+AGG | + | chr1.2:892196-892215 | MS.gene24158:CDS | 45.0% |
| ! | GTTGCATCCCCCACAATTTT+TGG | - | chr1.2:894670-894689 | None:intergenic | 45.0% |
| ! | TCTTCGTGGGTGTCATGAAA+CGG | + | chr1.2:893631-893650 | MS.gene24158:CDS | 45.0% |
| ! | TCTTGTGATGTAGGGGTATG+AGG | - | chr1.2:894812-894831 | None:intergenic | 45.0% |
| ! | TGGTCAAGAACTCTCTGAGA+GGG | + | chr1.2:892906-892925 | MS.gene24158:CDS | 45.0% |
| ! | TTTTCAGACCATGCCTGAGA+CGG | + | chr1.2:892972-892991 | MS.gene24158:CDS | 45.0% |
| !!! | CTCCTCTTTGGGACCAATTT+TGG | - | chr1.2:892055-892074 | None:intergenic | 45.0% |
| AAGACTTTCGCCTTGAACCG+AGG | - | chr1.2:892824-892843 | None:intergenic | 50.0% | |
| ATATGGTTGGAGCCACTGTG+AGG | - | chr1.2:892146-892165 | None:intergenic | 50.0% | |
| CATCAGAAGGCCTTGCATTG+TGG | + | chr1.2:893477-893496 | MS.gene24158:intron | 50.0% | |
| CCAATTGAGCTAAGCTCACG+GGG | - | chr1.2:892305-892324 | None:intergenic | 50.0% | |
| CGTGGACCCAGAATCCTAAT+TGG | + | chr1.2:894729-894748 | MS.gene24158:CDS | 50.0% | |
| GCCAATTGAGCTAAGCTCAC+GGG | - | chr1.2:892306-892325 | None:intergenic | 50.0% | |
| GCGTAACGACTTTGATGCGT+AGG | - | chr1.2:894082-894101 | None:intergenic | 50.0% | |
| GCTATGGTGCTTCTGTTCCA+AGG | + | chr1.2:891047-891066 | MS.gene24158:CDS | 50.0% | |
| GGCCAAAATTGGTCCCAAAG+AGG | + | chr1.2:892050-892069 | MS.gene24158:CDS | 50.0% | |
| GTGATTAACCGTCTCAGGCA+TGG | - | chr1.2:892983-893002 | None:intergenic | 50.0% | |
| GTTCCAAGGAAGCTACGTTC+AGG | + | chr1.2:891061-891080 | MS.gene24158:CDS | 50.0% | |
| TCACAGGCTGCTTCAACATC+TGG | + | chr1.2:893803-893822 | MS.gene24158:CDS | 50.0% | |
| TCACCTGAACGTAGCTTCCT+TGG | - | chr1.2:891067-891086 | None:intergenic | 50.0% | |
| TCTGACTGTTGTAGGACCAC+AGG | + | chr1.2:894123-894142 | MS.gene24158:CDS | 50.0% | |
| TGCAACAAGCAGCTCAAGCT+AGG | + | chr1.2:894684-894703 | MS.gene24158:CDS | 50.0% | |
| TGCCCATTTGTCTTGGATGG+GGG | - | chr1.2:894888-894907 | None:intergenic | 50.0% | |
| TGGCCTGAAATGTGAACGCA+TGG | - | chr1.2:893285-893304 | None:intergenic | 50.0% | |
| TGGTCCCAAAGAGGAGTTTC+TGG | + | chr1.2:892059-892078 | MS.gene24158:CDS | 50.0% | |
| ! | AAGATGATTTGGGGGGCACA+TGG | - | chr1.2:894788-894807 | None:intergenic | 50.0% |
| ! | CTTCGTGGGTGTCATGAAAC+GGG | + | chr1.2:893632-893651 | MS.gene24158:CDS | 50.0% |
| ! | TTGTGTGAGCTCTAGCCACT+AGG | - | chr1.2:892515-892534 | None:intergenic | 50.0% |
| ACAAGCCTGGCCACAATGCA+AGG | - | chr1.2:893490-893509 | None:intergenic | 55.0% | |
| AGGGCGTGAAAGGGGATAAG+GGG | - | chr1.2:893884-893903 | None:intergenic | 55.0% | |
| ATGTGTGAGCTCCAGCCACT+AGG | + | chr1.2:892377-892396 | MS.gene24158:intron | 55.0% | |
| CAGGGCGTGAAAGGGGATAA+GGG | - | chr1.2:893885-893904 | None:intergenic | 55.0% | |
| CCCCGTGAGCTTAGCTCAAT+TGG | + | chr1.2:892302-892321 | MS.gene24158:intron | 55.0% | |
| GCTCTAGCCACTAGGCTACT+TGG | - | chr1.2:892507-892526 | None:intergenic | 55.0% | |
| GTGGAGAAGTGGTGTGTCTG+AGG | + | chr1.2:892542-892561 | MS.gene24158:intron | 55.0% | |
| TCAGGGCGTGAAAGGGGATA+AGG | - | chr1.2:893886-893905 | None:intergenic | 55.0% | |
| TTGTCAGGTAGCCTAGTGGC+TGG | - | chr1.2:892391-892410 | None:intergenic | 55.0% | |
| ! | TGTGTCTGAGGTTCGAACCC+CGG | + | chr1.2:892554-892573 | MS.gene24158:intron | 55.0% |
| GAAGGCCTTGCATTGTGGCC+AGG | + | chr1.2:893482-893501 | MS.gene24158:intron | 60.0% | |
| TTCGCGACCGCGCTTCTTCA+TGG | - | chr1.2:891828-891847 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 890595 | 894934 | 890595 | ID=MS.gene24158 |
| chr1.2 | mRNA | 890595 | 894934 | 890595 | ID=MS.gene24158.t1;Parent=MS.gene24158 |
| chr1.2 | exon | 890595 | 890646 | 890595 | ID=MS.gene24158.t1.exon1;Parent=MS.gene24158.t1 |
| chr1.2 | CDS | 890595 | 890646 | 890595 | ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1 |
| chr1.2 | exon | 890794 | 890921 | 890794 | ID=MS.gene24158.t1.exon2;Parent=MS.gene24158.t1 |
| chr1.2 | CDS | 890794 | 890921 | 890794 | ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1 |
| chr1.2 | exon | 891034 | 891082 | 891034 | ID=MS.gene24158.t1.exon3;Parent=MS.gene24158.t1 |
| chr1.2 | CDS | 891034 | 891082 | 891034 | ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1 |
| chr1.2 | exon | 891825 | 891931 | 891825 | ID=MS.gene24158.t1.exon4;Parent=MS.gene24158.t1 |
| chr1.2 | CDS | 891825 | 891931 | 891825 | ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1 |
| chr1.2 | exon | 892038 | 892251 | 892038 | ID=MS.gene24158.t1.exon5;Parent=MS.gene24158.t1 |
| chr1.2 | CDS | 892038 | 892251 | 892038 | ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1 |
| chr1.2 | exon | 892821 | 893055 | 892821 | ID=MS.gene24158.t1.exon6;Parent=MS.gene24158.t1 |
| chr1.2 | CDS | 892821 | 893055 | 892821 | ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1 |
| chr1.2 | exon | 893143 | 893209 | 893143 | ID=MS.gene24158.t1.exon7;Parent=MS.gene24158.t1 |
| chr1.2 | CDS | 893143 | 893209 | 893143 | ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1 |
| chr1.2 | exon | 893301 | 893358 | 893301 | ID=MS.gene24158.t1.exon8;Parent=MS.gene24158.t1 |
| chr1.2 | CDS | 893301 | 893358 | 893301 | ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1 |
| chr1.2 | exon | 893483 | 893847 | 893483 | ID=MS.gene24158.t1.exon9;Parent=MS.gene24158.t1 |
| chr1.2 | CDS | 893483 | 893847 | 893483 | ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1 |
| chr1.2 | exon | 893926 | 894144 | 893926 | ID=MS.gene24158.t1.exon10;Parent=MS.gene24158.t1 |
| chr1.2 | CDS | 893926 | 894144 | 893926 | ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1 |
| chr1.2 | exon | 894584 | 894934 | 894584 | ID=MS.gene24158.t1.exon11;Parent=MS.gene24158.t1 |
| chr1.2 | CDS | 894584 | 894934 | 894584 | ID=cds.MS.gene24158.t1;Parent=MS.gene24158.t1 |
| Gene Sequence |
| Protein sequence |
