Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55505.t1 | XP_003618852.1 | 97.8 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 3.00E-141 | 511.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55505.t1 | Q5C9I9 | 56.0 | 248 | 109 | 0 | 12 | 259 | 6 | 253 | 9.2e-70 | 265.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55505.t1 | G7KNP7 | 97.8 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 2.2e-141 | 511.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049151 | MS.gene55505 | 0.815357 | 9.64E-52 | -1.69E-46 |
MS.gene049758 | MS.gene55505 | 0.864045 | 1.61E-64 | -1.69E-46 |
MS.gene049910 | MS.gene55505 | 0.806115 | 9.62E-50 | -1.69E-46 |
MS.gene049915 | MS.gene55505 | 0.80091 | 1.15E-48 | -1.69E-46 |
MS.gene050128 | MS.gene55505 | 0.869189 | 3.73E-66 | -1.69E-46 |
MS.gene050226 | MS.gene55505 | 0.803227 | 3.85E-49 | -1.69E-46 |
MS.gene050227 | MS.gene55505 | 0.811477 | 6.86E-51 | -1.69E-46 |
MS.gene050228 | MS.gene55505 | 0.808595 | 2.87E-50 | -1.69E-46 |
MS.gene050301 | MS.gene55505 | 0.824542 | 7.63E-54 | -1.69E-46 |
MS.gene050623 | MS.gene55505 | -0.853129 | 2.93E-61 | -1.69E-46 |
MS.gene050642 | MS.gene55505 | 0.839644 | 1.40E-57 | -1.69E-46 |
MS.gene050762 | MS.gene55505 | 0.828431 | 9.02E-55 | -1.69E-46 |
MS.gene050763 | MS.gene55505 | 0.830554 | 2.75E-55 | -1.69E-46 |
MS.gene051471 | MS.gene55505 | 0.817391 | 3.38E-52 | -1.69E-46 |
MS.gene051535 | MS.gene55505 | 0.847632 | 1.02E-59 | -1.69E-46 |
MS.gene051662 | MS.gene55505 | 0.846435 | 2.18E-59 | -1.69E-46 |
MS.gene051663 | MS.gene55505 | 0.838315 | 3.09E-57 | -1.69E-46 |
MS.gene051860 | MS.gene55505 | 0.80922 | 2.11E-50 | -1.69E-46 |
MS.gene051983 | MS.gene55505 | 0.84248 | 2.52E-58 | -1.69E-46 |
MS.gene052077 | MS.gene55505 | 0.827374 | 1.62E-54 | -1.69E-46 |
MS.gene052178 | MS.gene55505 | 0.847589 | 1.05E-59 | -1.69E-46 |
MS.gene052340 | MS.gene55505 | 0.82578 | 3.89E-54 | -1.69E-46 |
MS.gene053073 | MS.gene55505 | 0.87218 | 3.88E-67 | -1.69E-46 |
MS.gene05316 | MS.gene55505 | 0.838473 | 2.82E-57 | -1.69E-46 |
MS.gene053557 | MS.gene55505 | 0.857586 | 1.48E-62 | -1.69E-46 |
MS.gene053559 | MS.gene55505 | 0.831275 | 1.83E-55 | -1.69E-46 |
MS.gene053577 | MS.gene55505 | 0.811659 | 6.27E-51 | -1.69E-46 |
MS.gene053836 | MS.gene55505 | 0.859118 | 5.16E-63 | -1.69E-46 |
MS.gene053928 | MS.gene55505 | 0.801604 | 8.33E-49 | -1.69E-46 |
MS.gene054379 | MS.gene55505 | 0.832504 | 9.10E-56 | -1.69E-46 |
MS.gene054542 | MS.gene55505 | 0.808271 | 3.36E-50 | -1.69E-46 |
MS.gene054930 | MS.gene55505 | 0.842954 | 1.89E-58 | -1.69E-46 |
MS.gene055133 | MS.gene55505 | 0.819751 | 9.85E-53 | -1.69E-46 |
MS.gene055422 | MS.gene55505 | 0.82972 | 4.39E-55 | -1.69E-46 |
MS.gene056314 | MS.gene55505 | 0.801479 | 8.83E-49 | -1.69E-46 |
MS.gene056979 | MS.gene55505 | 0.842001 | 3.38E-58 | -1.69E-46 |
MS.gene057439 | MS.gene55505 | 0.80236 | 5.82E-49 | -1.69E-46 |
MS.gene057450 | MS.gene55505 | 0.805353 | 1.39E-49 | -1.69E-46 |
MS.gene057754 | MS.gene55505 | 0.840102 | 1.06E-57 | -1.69E-46 |
MS.gene058002 | MS.gene55505 | 0.819123 | 1.37E-52 | -1.69E-46 |
MS.gene05811 | MS.gene55505 | 0.821712 | 3.49E-53 | -1.69E-46 |
MS.gene058142 | MS.gene55505 | 0.800198 | 1.61E-48 | -1.69E-46 |
MS.gene058433 | MS.gene55505 | 0.819881 | 9.20E-53 | -1.69E-46 |
MS.gene058435 | MS.gene55505 | 0.825662 | 4.15E-54 | -1.69E-46 |
MS.gene058749 | MS.gene55505 | 0.800493 | 1.40E-48 | -1.69E-46 |
MS.gene058845 | MS.gene55505 | 0.819152 | 1.35E-52 | -1.69E-46 |
MS.gene05907 | MS.gene55505 | 0.808396 | 3.16E-50 | -1.69E-46 |
MS.gene059285 | MS.gene55505 | 0.809778 | 1.60E-50 | -1.69E-46 |
MS.gene059518 | MS.gene55505 | 0.811231 | 7.76E-51 | -1.69E-46 |
MS.gene059597 | MS.gene55505 | 0.822786 | 1.97E-53 | -1.69E-46 |
MS.gene05984 | MS.gene55505 | 0.823375 | 1.43E-53 | -1.69E-46 |
MS.gene059894 | MS.gene55505 | 0.877231 | 7.42E-69 | -1.69E-46 |
MS.gene059899 | MS.gene55505 | 0.849001 | 4.28E-60 | -1.69E-46 |
MS.gene060084 | MS.gene55505 | 0.828389 | 9.24E-55 | -1.69E-46 |
MS.gene060476 | MS.gene55505 | 0.817165 | 3.80E-52 | -1.69E-46 |
MS.gene060495 | MS.gene55505 | 0.832919 | 7.18E-56 | -1.69E-46 |
MS.gene060943 | MS.gene55505 | 0.822039 | 2.93E-53 | -1.69E-46 |
MS.gene061002 | MS.gene55505 | 0.800073 | 1.71E-48 | -1.69E-46 |
MS.gene061049 | MS.gene55505 | 0.841315 | 5.12E-58 | -1.69E-46 |
MS.gene061112 | MS.gene55505 | 0.822857 | 1.89E-53 | -1.69E-46 |
MS.gene061113 | MS.gene55505 | 0.831522 | 1.59E-55 | -1.69E-46 |
MS.gene061265 | MS.gene55505 | 0.825782 | 3.89E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55505.t1 | MTR_6g023910 | 97.778 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 0.0 | 536 |
MS.gene55505.t1 | MTR_6g023610 | 82.900 | 269 | 46 | 0 | 1 | 269 | 1 | 269 | 1.68e-167 | 464 |
MS.gene55505.t1 | MTR_6g023590 | 73.208 | 265 | 71 | 0 | 1 | 265 | 1 | 265 | 3.29e-144 | 405 |
MS.gene55505.t1 | MTR_6g023990 | 72.556 | 266 | 72 | 1 | 1 | 265 | 1 | 266 | 7.68e-140 | 394 |
MS.gene55505.t1 | MTR_6g023600 | 73.962 | 265 | 69 | 0 | 1 | 265 | 1 | 265 | 2.24e-139 | 393 |
MS.gene55505.t1 | MTR_6g023950 | 73.180 | 261 | 70 | 0 | 1 | 261 | 1 | 261 | 3.58e-135 | 382 |
MS.gene55505.t1 | MTR_6g023600 | 72.075 | 265 | 68 | 1 | 1 | 265 | 1 | 259 | 1.84e-132 | 375 |
MS.gene55505.t1 | MTR_7g110130 | 50.593 | 253 | 124 | 1 | 9 | 261 | 2 | 253 | 7.59e-82 | 247 |
MS.gene55505.t1 | MTR_2g090165 | 50.198 | 253 | 124 | 2 | 9 | 261 | 2 | 252 | 1.78e-81 | 246 |
MS.gene55505.t1 | MTR_7g110140 | 47.826 | 253 | 130 | 2 | 9 | 261 | 2 | 252 | 2.22e-75 | 230 |
MS.gene55505.t1 | MTR_7g105460 | 45.594 | 261 | 140 | 2 | 1 | 261 | 1 | 259 | 2.30e-74 | 228 |
MS.gene55505.t1 | MTR_7g110160 | 46.640 | 253 | 115 | 2 | 9 | 261 | 2 | 234 | 2.24e-70 | 217 |
MS.gene55505.t1 | MTR_4g052340 | 46.185 | 249 | 129 | 3 | 12 | 260 | 13 | 256 | 9.18e-70 | 216 |
MS.gene55505.t1 | MTR_6g023940 | 57.944 | 214 | 28 | 3 | 1 | 214 | 1 | 152 | 3.11e-69 | 211 |
MS.gene55505.t1 | MTR_4g052300 | 46.693 | 257 | 126 | 5 | 6 | 259 | 1 | 249 | 6.14e-69 | 214 |
MS.gene55505.t1 | MTR_7g071680 | 46.154 | 273 | 119 | 8 | 9 | 259 | 25 | 291 | 3.38e-68 | 213 |
MS.gene55505.t1 | MTR_4g052320 | 45.312 | 256 | 136 | 3 | 6 | 261 | 1 | 252 | 4.61e-68 | 212 |
MS.gene55505.t1 | MTR_6g035395 | 48.000 | 250 | 115 | 3 | 12 | 261 | 4 | 238 | 1.13e-67 | 210 |
MS.gene55505.t1 | MTR_4g052350 | 43.071 | 267 | 146 | 4 | 1 | 266 | 1 | 262 | 1.10e-65 | 206 |
MS.gene55505.t1 | MTR_4g078630 | 42.481 | 266 | 142 | 3 | 12 | 270 | 18 | 279 | 2.82e-62 | 197 |
MS.gene55505.t1 | MTR_7g107670 | 38.868 | 265 | 154 | 4 | 7 | 266 | 27 | 288 | 6.42e-58 | 187 |
MS.gene55505.t1 | MTR_7g083870 | 40.698 | 258 | 140 | 6 | 12 | 261 | 34 | 286 | 1.87e-56 | 183 |
MS.gene55505.t1 | MTR_7g105590 | 45.503 | 189 | 101 | 2 | 12 | 200 | 7 | 193 | 4.44e-53 | 171 |
MS.gene55505.t1 | MTR_7g105580 | 39.200 | 250 | 132 | 3 | 12 | 261 | 7 | 236 | 4.66e-51 | 168 |
MS.gene55505.t1 | MTR_4g084800 | 56.429 | 140 | 60 | 1 | 1 | 140 | 1 | 139 | 6.77e-51 | 164 |
MS.gene55505.t1 | MTR_3g020670 | 38.722 | 266 | 154 | 4 | 3 | 261 | 6 | 269 | 6.15e-50 | 166 |
MS.gene55505.t1 | MTR_3g113870 | 41.361 | 191 | 105 | 4 | 21 | 209 | 29 | 214 | 3.69e-45 | 152 |
MS.gene55505.t1 | MTR_7g105570 | 34.137 | 249 | 111 | 2 | 13 | 261 | 21 | 216 | 1.10e-37 | 132 |
MS.gene55505.t1 | MTR_7g113650 | 31.439 | 264 | 150 | 10 | 12 | 259 | 39 | 287 | 1.44e-27 | 108 |
MS.gene55505.t1 | MTR_1g082760 | 33.080 | 263 | 153 | 9 | 9 | 259 | 36 | 287 | 2.05e-27 | 107 |
MS.gene55505.t1 | MTR_7g094510 | 31.274 | 259 | 168 | 5 | 9 | 262 | 2 | 255 | 1.39e-26 | 104 |
MS.gene55505.t1 | MTR_4g132850 | 31.474 | 251 | 159 | 6 | 12 | 259 | 6 | 246 | 1.61e-26 | 104 |
MS.gene55505.t1 | MTR_3g085740 | 29.368 | 269 | 170 | 9 | 1 | 262 | 64 | 319 | 2.08e-26 | 105 |
MS.gene55505.t1 | MTR_7g094520 | 31.783 | 258 | 166 | 6 | 10 | 262 | 8 | 260 | 2.21e-25 | 101 |
MS.gene55505.t1 | MTR_4g131740 | 26.592 | 267 | 168 | 8 | 8 | 259 | 35 | 288 | 9.95e-22 | 92.4 |
MS.gene55505.t1 | MTR_4g064887 | 30.370 | 270 | 164 | 8 | 1 | 259 | 1 | 257 | 3.20e-20 | 87.8 |
MS.gene55505.t1 | MTR_7g105560 | 64.179 | 67 | 23 | 1 | 1 | 67 | 1 | 66 | 5.68e-20 | 84.3 |
MS.gene55505.t1 | MTR_4g058810 | 27.600 | 250 | 164 | 7 | 13 | 252 | 11 | 253 | 1.45e-19 | 85.9 |
MS.gene55505.t1 | MTR_1196s0010 | 31.102 | 254 | 152 | 9 | 16 | 262 | 277 | 514 | 5.14e-19 | 86.7 |
MS.gene55505.t1 | MTR_1g068955 | 29.297 | 256 | 170 | 5 | 10 | 259 | 11 | 261 | 5.37e-19 | 84.7 |
MS.gene55505.t1 | MTR_4g058840 | 27.200 | 250 | 165 | 7 | 13 | 252 | 11 | 253 | 1.37e-18 | 83.6 |
MS.gene55505.t1 | MTR_4g058820 | 27.200 | 250 | 165 | 7 | 13 | 252 | 11 | 253 | 1.37e-18 | 83.6 |
MS.gene55505.t1 | MTR_1g051165 | 26.437 | 261 | 172 | 7 | 12 | 258 | 13 | 267 | 2.74e-18 | 82.8 |
MS.gene55505.t1 | MTR_7g063320 | 29.478 | 268 | 179 | 7 | 1 | 262 | 1 | 264 | 4.69e-18 | 81.6 |
MS.gene55505.t1 | MTR_7g063270 | 28.030 | 264 | 177 | 8 | 4 | 261 | 7 | 263 | 5.51e-18 | 81.6 |
MS.gene55505.t1 | MTR_3g068085 | 29.963 | 267 | 169 | 9 | 2 | 261 | 4 | 259 | 9.44e-18 | 80.9 |
MS.gene55505.t1 | MTR_3g068070 | 28.889 | 270 | 166 | 11 | 3 | 261 | 5 | 259 | 2.52e-17 | 79.7 |
MS.gene55505.t1 | MTR_7g063260 | 27.757 | 263 | 180 | 7 | 4 | 261 | 7 | 264 | 2.65e-17 | 79.7 |
MS.gene55505.t1 | MTR_7g063390 | 27.778 | 270 | 180 | 8 | 1 | 261 | 1 | 264 | 1.31e-16 | 77.8 |
MS.gene55505.t1 | MTR_4g064887 | 30.516 | 213 | 139 | 6 | 1 | 208 | 1 | 209 | 2.45e-16 | 76.3 |
MS.gene55505.t1 | MTR_3g068175 | 27.341 | 267 | 162 | 8 | 9 | 259 | 13 | 263 | 8.26e-16 | 75.9 |
MS.gene55505.t1 | MTR_3g068175 | 27.376 | 263 | 163 | 7 | 9 | 259 | 13 | 259 | 8.43e-16 | 75.5 |
MS.gene55505.t1 | MTR_3g068065 | 28.740 | 254 | 167 | 8 | 13 | 261 | 17 | 261 | 1.17e-15 | 75.1 |
MS.gene55505.t1 | MTR_7g063360 | 29.044 | 272 | 174 | 10 | 1 | 261 | 1 | 264 | 1.58e-15 | 74.7 |
MS.gene55505.t1 | MTR_7g063330 | 25.769 | 260 | 186 | 5 | 5 | 261 | 7 | 262 | 1.82e-15 | 74.7 |
MS.gene55505.t1 | MTR_4g086400 | 29.384 | 211 | 125 | 5 | 14 | 207 | 5 | 208 | 5.65e-15 | 74.7 |
MS.gene55505.t1 | MTR_4g086410 | 29.858 | 211 | 124 | 5 | 14 | 207 | 5 | 208 | 1.70e-14 | 73.6 |
MS.gene55505.t1 | MTR_3g068155 | 28.352 | 261 | 155 | 9 | 13 | 259 | 19 | 261 | 4.05e-14 | 70.9 |
MS.gene55505.t1 | MTR_8g096580 | 27.805 | 205 | 138 | 5 | 16 | 217 | 48 | 245 | 9.10e-14 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55505.t1 | AT2G47140 | 49.012 | 253 | 127 | 2 | 9 | 261 | 2 | 252 | 1.17e-79 | 241 |
MS.gene55505.t1 | AT2G47130 | 48.638 | 257 | 121 | 5 | 9 | 261 | 2 | 251 | 4.56e-74 | 227 |
MS.gene55505.t1 | AT3G29260 | 48.249 | 257 | 122 | 5 | 9 | 261 | 2 | 251 | 1.72e-72 | 223 |
MS.gene55505.t1 | AT2G47120 | 47.036 | 253 | 130 | 4 | 9 | 261 | 2 | 250 | 3.81e-72 | 222 |
MS.gene55505.t1 | AT3G29250 | 47.656 | 256 | 126 | 5 | 9 | 261 | 2 | 252 | 1.38e-71 | 221 |
MS.gene55505.t1 | AT3G29250 | 47.674 | 258 | 127 | 5 | 7 | 261 | 36 | 288 | 1.51e-71 | 222 |
MS.gene55505.t1 | AT2G47120 | 46.800 | 250 | 129 | 4 | 12 | 261 | 6 | 251 | 6.28e-71 | 219 |
MS.gene55505.t1 | AT3G29250 | 47.308 | 260 | 127 | 6 | 7 | 261 | 36 | 290 | 1.86e-69 | 216 |
MS.gene55505.t1 | AT3G51680 | 42.599 | 277 | 137 | 5 | 1 | 259 | 20 | 292 | 4.53e-64 | 203 |
MS.gene55505.t1 | AT3G26760 | 41.045 | 268 | 147 | 6 | 7 | 266 | 30 | 294 | 6.30e-60 | 192 |
MS.gene55505.t1 | AT3G26770 | 39.844 | 256 | 145 | 5 | 10 | 259 | 38 | 290 | 1.22e-56 | 184 |
MS.gene55505.t1 | AT1G52340 | 41.923 | 260 | 139 | 5 | 12 | 261 | 17 | 274 | 3.14e-55 | 179 |
MS.gene55505.t1 | AT4G03140 | 40.000 | 255 | 145 | 4 | 12 | 261 | 77 | 328 | 1.19e-54 | 180 |
MS.gene55505.t1 | AT3G42960 | 41.241 | 274 | 147 | 7 | 6 | 270 | 1 | 269 | 6.99e-52 | 171 |
MS.gene55505.t1 | AT1G54870 | 31.716 | 268 | 160 | 9 | 4 | 259 | 75 | 331 | 1.52e-27 | 108 |
MS.gene55505.t1 | AT1G54870 | 31.716 | 268 | 160 | 9 | 4 | 259 | 73 | 329 | 1.61e-27 | 108 |
MS.gene55505.t1 | AT5G18210 | 32.075 | 265 | 153 | 7 | 13 | 262 | 8 | 260 | 2.32e-27 | 106 |
MS.gene55505.t1 | AT3G03980 | 30.627 | 271 | 171 | 5 | 4 | 262 | 5 | 270 | 4.53e-26 | 103 |
MS.gene55505.t1 | AT4G13180 | 30.000 | 270 | 173 | 7 | 1 | 262 | 1 | 262 | 1.57e-25 | 102 |
MS.gene55505.t1 | AT3G04000 | 30.292 | 274 | 173 | 5 | 2 | 262 | 3 | 271 | 1.69e-25 | 102 |
MS.gene55505.t1 | AT3G05260 | 29.478 | 268 | 171 | 8 | 4 | 262 | 28 | 286 | 2.11e-25 | 102 |
MS.gene55505.t1 | AT5G18210 | 32.520 | 246 | 143 | 6 | 13 | 245 | 8 | 243 | 6.81e-24 | 97.8 |
MS.gene55505.t1 | AT4G05530 | 31.325 | 249 | 162 | 6 | 12 | 259 | 8 | 248 | 3.75e-22 | 92.8 |
MS.gene55505.t1 | AT1G24360 | 26.772 | 254 | 169 | 7 | 12 | 259 | 73 | 315 | 4.55e-21 | 90.9 |
MS.gene55505.t1 | AT5G06060 | 29.259 | 270 | 157 | 9 | 7 | 261 | 3 | 253 | 2.46e-19 | 85.5 |
MS.gene55505.t1 | AT3G46170 | 25.940 | 266 | 173 | 8 | 13 | 264 | 26 | 281 | 1.87e-17 | 80.5 |
MS.gene55505.t1 | AT2G29340 | 29.167 | 264 | 149 | 9 | 13 | 259 | 7 | 249 | 2.39e-17 | 79.7 |
MS.gene55505.t1 | AT3G55290 | 26.692 | 266 | 171 | 9 | 13 | 264 | 17 | 272 | 3.34e-17 | 79.7 |
MS.gene55505.t1 | AT2G29340 | 29.167 | 264 | 149 | 9 | 13 | 259 | 7 | 249 | 3.36e-17 | 80.1 |
MS.gene55505.t1 | AT3G55290 | 26.692 | 266 | 171 | 9 | 13 | 264 | 18 | 273 | 3.70e-17 | 79.7 |
MS.gene55505.t1 | AT1G63380 | 26.437 | 261 | 179 | 7 | 13 | 264 | 17 | 273 | 7.26e-17 | 79.0 |
MS.gene55505.t1 | AT1G63380 | 26.437 | 261 | 179 | 7 | 13 | 264 | 19 | 275 | 7.90e-17 | 78.6 |
MS.gene55505.t1 | AT1G63380 | 26.437 | 261 | 179 | 7 | 13 | 264 | 15 | 271 | 8.13e-17 | 78.6 |
MS.gene55505.t1 | AT1G63380 | 26.437 | 261 | 179 | 7 | 13 | 264 | 22 | 278 | 9.89e-17 | 78.6 |
MS.gene55505.t1 | AT2G29310 | 29.699 | 266 | 149 | 11 | 13 | 261 | 7 | 251 | 1.81e-16 | 77.4 |
MS.gene55505.t1 | AT2G29360 | 28.947 | 266 | 169 | 7 | 7 | 261 | 4 | 260 | 3.26e-16 | 76.6 |
MS.gene55505.t1 | AT2G29150 | 30.037 | 273 | 154 | 11 | 3 | 259 | 6 | 257 | 3.56e-16 | 76.6 |
MS.gene55505.t1 | AT1G07450 | 30.888 | 259 | 154 | 12 | 13 | 261 | 8 | 251 | 8.76e-16 | 75.5 |
MS.gene55505.t1 | AT1G62610 | 25.670 | 261 | 181 | 7 | 13 | 264 | 15 | 271 | 1.25e-15 | 75.5 |
MS.gene55505.t1 | AT1G62610 | 25.670 | 261 | 181 | 7 | 13 | 264 | 14 | 270 | 1.28e-15 | 75.1 |
MS.gene55505.t1 | AT1G62610 | 25.670 | 261 | 181 | 7 | 13 | 264 | 13 | 269 | 1.37e-15 | 75.1 |
MS.gene55505.t1 | AT5G50600 | 26.733 | 202 | 142 | 4 | 13 | 212 | 45 | 242 | 1.46e-15 | 75.9 |
MS.gene55505.t1 | AT5G50700 | 26.733 | 202 | 142 | 4 | 13 | 212 | 45 | 242 | 1.46e-15 | 75.9 |
MS.gene55505.t1 | AT1G62610 | 25.670 | 261 | 181 | 7 | 13 | 264 | 19 | 275 | 1.52e-15 | 75.1 |
MS.gene55505.t1 | AT5G50770 | 30.481 | 187 | 122 | 5 | 13 | 196 | 45 | 226 | 1.75e-15 | 75.5 |
MS.gene55505.t1 | AT2G30670 | 26.295 | 251 | 173 | 7 | 13 | 259 | 7 | 249 | 3.14e-15 | 73.9 |
MS.gene55505.t1 | AT3G55310 | 26.568 | 271 | 165 | 11 | 13 | 264 | 17 | 272 | 4.04e-15 | 73.9 |
MS.gene55505.t1 | AT2G29340 | 29.858 | 211 | 119 | 7 | 13 | 209 | 7 | 202 | 5.58e-15 | 72.0 |
MS.gene55505.t1 | AT2G29340 | 29.858 | 211 | 119 | 7 | 13 | 209 | 7 | 202 | 5.58e-15 | 72.0 |
MS.gene55505.t1 | AT5G50690 | 29.670 | 182 | 113 | 5 | 10 | 184 | 42 | 215 | 8.91e-15 | 72.4 |
MS.gene55505.t1 | AT5G50590 | 29.670 | 182 | 113 | 5 | 10 | 184 | 42 | 215 | 8.91e-15 | 72.4 |
MS.gene55505.t1 | AT2G29330 | 28.287 | 251 | 168 | 8 | 13 | 259 | 7 | 249 | 1.23e-14 | 72.4 |
MS.gene55505.t1 | AT5G50690 | 29.834 | 181 | 114 | 5 | 10 | 184 | 42 | 215 | 1.75e-14 | 72.4 |
MS.gene55505.t1 | AT5G50590 | 29.834 | 181 | 114 | 5 | 10 | 184 | 42 | 215 | 1.75e-14 | 72.4 |
MS.gene55505.t1 | AT3G47360 | 27.273 | 198 | 130 | 7 | 13 | 204 | 45 | 234 | 3.01e-14 | 71.6 |
MS.gene55505.t1 | AT3G47350 | 24.873 | 197 | 136 | 5 | 13 | 204 | 44 | 233 | 3.71e-14 | 71.6 |
MS.gene55505.t1 | AT3G47350 | 24.873 | 197 | 136 | 5 | 13 | 204 | 44 | 233 | 4.19e-14 | 71.2 |
MS.gene55505.t1 | AT2G29370 | 28.309 | 272 | 165 | 9 | 3 | 261 | 6 | 260 | 7.07e-14 | 70.1 |
MS.gene55505.t1 | AT1G49670 | 30.049 | 203 | 118 | 6 | 18 | 203 | 9 | 204 | 9.54e-14 | 71.2 |
MS.gene55505.t1 | AT2G29260 | 28.571 | 252 | 166 | 8 | 13 | 259 | 68 | 310 | 1.08e-13 | 70.5 |
MS.gene55505.t1 | AT1G49670 | 30.049 | 203 | 118 | 6 | 18 | 203 | 9 | 204 | 1.13e-13 | 71.2 |
MS.gene55505.t1 | AT2G29310 | 30.000 | 210 | 118 | 8 | 13 | 208 | 7 | 201 | 1.35e-12 | 65.5 |
MS.gene55505.t1 | AT2G29320 | 27.799 | 259 | 160 | 10 | 13 | 259 | 13 | 256 | 3.59e-12 | 65.5 |
MS.gene55505.t1 | AT1G07440 | 27.273 | 253 | 167 | 8 | 13 | 259 | 12 | 253 | 5.29e-12 | 64.7 |
MS.gene55505.t1 | AT3G47350 | 31.132 | 106 | 67 | 2 | 13 | 116 | 44 | 145 | 5.50e-12 | 64.7 |
MS.gene55505.t1 | AT2G29350 | 29.612 | 206 | 126 | 7 | 8 | 204 | 10 | 205 | 7.57e-12 | 63.9 |
MS.gene55505.t1 | AT2G29310 | 28.788 | 198 | 124 | 8 | 70 | 261 | 63 | 249 | 4.67e-11 | 62.0 |
Find 62 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGTCGAAGCACGCGATAAT+AGG | 0.212241 | 6.2:-17017356 | MS.gene55505:CDS |
AACTTGCAAAGCATGGAATA+AGG | 0.289760 | 6.2:-17017310 | MS.gene55505:CDS |
GGCAGATGCTGTGTTGTTCT+TGG | 0.317529 | 6.2:-17017153 | MS.gene55505:CDS |
CACCATACGTGCACCTTGTT+CGG | 0.329714 | 6.2:+17017999 | None:intergenic |
CAATCAACGGTCAATACTTA+TGG | 0.333742 | 6.2:-17017859 | MS.gene55505:CDS |
CGTCTCTTTGCCGATGCCGC+TGG | 0.343665 | 6.2:+17018035 | None:intergenic |
CACTCACTAACAGCAGTCTT+AGG | 0.352793 | 6.2:-17018092 | MS.gene55505:CDS |
GATATTATGTTTAGCAATGC+TGG | 0.362324 | 6.2:-17017581 | MS.gene55505:CDS |
CTTCATTGCCCAACTCATCT+TGG | 0.372263 | 6.2:+17017962 | None:intergenic |
GCCGATGCCGCTGGCACCTC+CGG | 0.378274 | 6.2:+17018044 | None:intergenic |
AATGAAGTGGCTGCATCTAT+TGG | 0.402249 | 6.2:-17017946 | MS.gene55505:CDS |
TGTCGAAGCACGCGATAATA+GGG | 0.426974 | 6.2:-17017355 | MS.gene55505:CDS |
AGTGACAAAGTCAGATTCAT+TGG | 0.438975 | 6.2:+17017127 | None:intergenic |
ACCGGAGGTGCCAGCGGCAT+CGG | 0.446928 | 6.2:-17018045 | MS.gene55505:CDS |
GAACGTTAACTGAGAACAAA+TGG | 0.454425 | 6.2:+17017504 | None:intergenic |
TTGTTCTCAGTTAACGTTCG+AGG | 0.458461 | 6.2:-17017500 | MS.gene55505:CDS |
GTGGATGGTAGCTTTCTTGA+TGG | 0.469944 | 6.2:-17017089 | MS.gene55505:CDS |
CTGCATCTATTGGCAGCCAC+AGG | 0.470696 | 6.2:-17017936 | MS.gene55505:CDS |
GTGAATTGTGTATCACCAAA+TGG | 0.474979 | 6.2:-17017287 | MS.gene55505:CDS |
CGCCGACATCCAAGATGAGT+TGG | 0.475014 | 6.2:-17017971 | MS.gene55505:CDS |
CTCAGTTAACGTTCGAGGAA+TGG | 0.475650 | 6.2:-17017495 | MS.gene55505:CDS |
GGAGAATACAAGAGGTTGGA+AGG | 0.477377 | 6.2:-17017200 | MS.gene55505:CDS |
ACTTGCAAAGCATGGAATAA+GGG | 0.486045 | 6.2:-17017309 | MS.gene55505:CDS |
AACAGCAGTCTTAGGTTAGC+AGG | 0.489763 | 6.2:-17018084 | MS.gene55505:CDS |
TCTAGCAATTTCATAGTCAA+TGG | 0.495865 | 6.2:+17017254 | None:intergenic |
GGCCTTGATCTTCGTGTGGA+TGG | 0.499300 | 6.2:-17017104 | MS.gene55505:CDS |
GAAACATGCGGCGCGTGCGA+TGG | 0.507406 | 6.2:-17017462 | MS.gene55505:CDS |
AATGGTGTTGCTAATCCATT+TGG | 0.510778 | 6.2:+17017272 | None:intergenic |
TCCAACACGGTCTGATCAGA+TGG | 0.513391 | 6.2:+17017548 | None:intergenic |
ATATTATGTTTAGCAATGCT+GGG | 0.517928 | 6.2:-17017580 | MS.gene55505:CDS |
GGCAAAATAGCCATTGTCAC+CGG | 0.521032 | 6.2:-17018063 | MS.gene55505:CDS |
ATGGTGGACGGTTGCGTGAG+GGG | 0.522782 | 6.2:-17017443 | MS.gene55505:CDS |
AACGGTCAATACTTATGGAC+AGG | 0.523815 | 6.2:-17017854 | MS.gene55505:intron |
TGCCGAACAAGGTGCACGTA+TGG | 0.526292 | 6.2:-17018001 | MS.gene55505:CDS |
AATGAATCTGACTTTGTCAC+TGG | 0.530339 | 6.2:-17017125 | MS.gene55505:CDS |
GCGCATGTCTTTGCCGAACA+AGG | 0.531534 | 6.2:-17018012 | MS.gene55505:CDS |
AGTAAGCAACTTGCAAAGCA+TGG | 0.531560 | 6.2:-17017317 | MS.gene55505:CDS |
GCCGACATCCAAGATGAGTT+GGG | 0.536561 | 6.2:-17017970 | MS.gene55505:CDS |
GTGTGCACAGCTAGCGTCGC+CGG | 0.540426 | 6.2:-17017413 | MS.gene55505:CDS |
CTTCATGCTACCGTTGCTAC+CGG | 0.541833 | 6.2:+17017394 | None:intergenic |
GCTGGCACCTCCGGTGACAA+TGG | 0.548752 | 6.2:+17018053 | None:intergenic |
GATGGTGGACGGTTGCGTGA+GGG | 0.557625 | 6.2:-17017444 | MS.gene55505:CDS |
TACCATCCACACGAAGATCA+AGG | 0.559297 | 6.2:+17017102 | None:intergenic |
CACTGGCCTTGATCTTCGTG+TGG | 0.560496 | 6.2:-17017108 | MS.gene55505:CDS |
ACATGCGGCGCGTGCGATGG+TGG | 0.561353 | 6.2:-17017459 | MS.gene55505:CDS |
ATACAAGAGGTTGGAAGGAG+TGG | 0.561860 | 6.2:-17017195 | MS.gene55505:CDS |
CGATGGTGGACGGTTGCGTG+AGG | 0.569245 | 6.2:-17017445 | MS.gene55505:CDS |
CGAACAAGGTGCACGTATGG+TGG | 0.575204 | 6.2:-17017998 | MS.gene55505:CDS |
GCCCAACTCATCTTGGATGT+CGG | 0.577520 | 6.2:+17017969 | None:intergenic |
ACTATGAAATTGCTAGATGC+AGG | 0.589183 | 6.2:-17017248 | MS.gene55505:CDS |
ATTGTCACCGGAGGTGCCAG+CGG | 0.592750 | 6.2:-17018051 | MS.gene55505:CDS |
GCGGCGCGTGCGATGGTGGA+CGG | 0.599914 | 6.2:-17017455 | MS.gene55505:CDS |
TCCATCTGATCAGACCGTGT+TGG | 0.608267 | 6.2:-17017549 | MS.gene55505:CDS |
CGCTACATCACAATGAACAT+AGG | 0.610262 | 6.2:+17017909 | None:intergenic |
GCTAGCGTCGCCGGTAGCAA+CGG | 0.612378 | 6.2:-17017404 | MS.gene55505:CDS |
CAGCGGCATCGGCAAAGAGA+CGG | 0.625686 | 6.2:-17018034 | MS.gene55505:CDS |
AGATGAGTTGGGCAATGAAG+TGG | 0.652574 | 6.2:-17017959 | MS.gene55505:CDS |
GGCATTGTGCGTGAAACATG+CGG | 0.656257 | 6.2:-17017474 | MS.gene55505:CDS |
GGTTCTCAGCACTAAACATG+TGG | 0.675466 | 6.2:-17017174 | MS.gene55505:CDS |
AAAATAGCCATTGTCACCGG+AGG | 0.684966 | 6.2:-17018060 | MS.gene55505:CDS |
AATGAACATAGGTGCACCTG+TGG | 0.691741 | 6.2:+17017920 | None:intergenic |
AGAAATGTCGAATTCCAACA+CGG | 0.703987 | 6.2:+17017535 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CATAACATATTATCTATCTT+TGG | + | chr6.2:17017522-17017541 | None:intergenic | 20.0% |
! | ATATTATGTTTAGCAATGCT+GGG | - | chr6.2:17017592-17017611 | MS.gene55505:intron | 25.0% |
! | TTGTTTAGACAAATGATTCA+TGG | - | chr6.2:17017449-17017468 | MS.gene55505:CDS | 25.0% |
!!! | ACTTATTTTTTTTCCACAAC+AGG | - | chr6.2:17017566-17017585 | MS.gene55505:CDS | 25.0% |
AACATAATATCTACCTGTTG+TGG | + | chr6.2:17017582-17017601 | None:intergenic | 30.0% | |
CAAAAATCTCGTTCAATCAA+CGG | - | chr6.2:17017300-17017319 | MS.gene55505:CDS | 30.0% | |
GATATTATGTTTAGCAATGC+TGG | - | chr6.2:17017591-17017610 | MS.gene55505:intron | 30.0% | |
GGACAGGTAAATAATAACTA+AGG | - | chr6.2:17017334-17017353 | MS.gene55505:CDS | 30.0% | |
TCTAGCAATTTCATAGTCAA+TGG | + | chr6.2:17017921-17017940 | None:intergenic | 30.0% | |
!! | TGATTTTTGGAGAATACAAG+AGG | - | chr6.2:17017964-17017983 | MS.gene55505:CDS | 30.0% |
!!! | GAGACAGTTGATTTGATTTT+TGG | - | chr6.2:17017951-17017970 | MS.gene55505:CDS | 30.0% |
AACTTGCAAAGCATGGAATA+AGG | - | chr6.2:17017862-17017881 | MS.gene55505:CDS | 35.0% | |
AATGAATCTGACTTTGTCAC+TGG | - | chr6.2:17018047-17018066 | MS.gene55505:CDS | 35.0% | |
ACTATGAAATTGCTAGATGC+AGG | - | chr6.2:17017924-17017943 | MS.gene55505:CDS | 35.0% | |
ACTTGCAAAGCATGGAATAA+GGG | - | chr6.2:17017863-17017882 | MS.gene55505:CDS | 35.0% | |
AGAAATGTCGAATTCCAACA+CGG | + | chr6.2:17017640-17017659 | None:intergenic | 35.0% | |
AGTGACAAAGTCAGATTCAT+TGG | + | chr6.2:17018048-17018067 | None:intergenic | 35.0% | |
CAATCAACGGTCAATACTTA+TGG | - | chr6.2:17017313-17017332 | MS.gene55505:CDS | 35.0% | |
GAACGTTAACTGAGAACAAA+TGG | + | chr6.2:17017671-17017690 | None:intergenic | 35.0% | |
GTGAATTGTGTATCACCAAA+TGG | - | chr6.2:17017885-17017904 | MS.gene55505:CDS | 35.0% | |
!! | AATGGTGTTGCTAATCCATT+TGG | + | chr6.2:17017903-17017922 | None:intergenic | 35.0% |
!! | TTTTGGAGAATACAAGAGGT+TGG | - | chr6.2:17017968-17017987 | MS.gene55505:CDS | 35.0% |
AACGGTCAATACTTATGGAC+AGG | - | chr6.2:17017318-17017337 | MS.gene55505:CDS | 40.0% | |
AATGAAGTGGCTGCATCTAT+TGG | - | chr6.2:17017226-17017245 | MS.gene55505:CDS | 40.0% | |
AGTAAGCAACTTGCAAAGCA+TGG | - | chr6.2:17017855-17017874 | MS.gene55505:CDS | 40.0% | |
CGCTACATCACAATGAACAT+AGG | + | chr6.2:17017266-17017285 | None:intergenic | 40.0% | |
TTGTTCTCAGTTAACGTTCG+AGG | - | chr6.2:17017672-17017691 | MS.gene55505:intron | 40.0% | |
AAAATAGCCATTGTCACCGG+AGG | - | chr6.2:17017112-17017131 | MS.gene55505:CDS | 45.0% | |
AACAGCAGTCTTAGGTTAGC+AGG | - | chr6.2:17017088-17017107 | MS.gene55505:CDS | 45.0% | |
AATGAACATAGGTGCACCTG+TGG | + | chr6.2:17017255-17017274 | None:intergenic | 45.0% | |
ATACAAGAGGTTGGAAGGAG+TGG | - | chr6.2:17017977-17017996 | MS.gene55505:CDS | 45.0% | |
ATGTCGAAGCACGCGATAAT+AGG | - | chr6.2:17017816-17017835 | MS.gene55505:intron | 45.0% | |
CACTCACTAACAGCAGTCTT+AGG | - | chr6.2:17017080-17017099 | MS.gene55505:CDS | 45.0% | |
CTCAGTTAACGTTCGAGGAA+TGG | - | chr6.2:17017677-17017696 | MS.gene55505:intron | 45.0% | |
CTTCATTGCCCAACTCATCT+TGG | + | chr6.2:17017213-17017232 | None:intergenic | 45.0% | |
GGAGAATACAAGAGGTTGGA+AGG | - | chr6.2:17017972-17017991 | MS.gene55505:CDS | 45.0% | |
GGCAAAATAGCCATTGTCAC+CGG | - | chr6.2:17017109-17017128 | MS.gene55505:CDS | 45.0% | |
GGTTCTCAGCACTAAACATG+TGG | - | chr6.2:17017998-17018017 | MS.gene55505:CDS | 45.0% | |
GTGGATGGTAGCTTTCTTGA+TGG | - | chr6.2:17018083-17018102 | MS.gene55505:CDS | 45.0% | |
TACCATCCACACGAAGATCA+AGG | + | chr6.2:17018073-17018092 | None:intergenic | 45.0% | |
TGTCGAAGCACGCGATAATA+GGG | - | chr6.2:17017817-17017836 | MS.gene55505:intron | 45.0% | |
! | AGATGAGTTGGGCAATGAAG+TGG | - | chr6.2:17017213-17017232 | MS.gene55505:CDS | 45.0% |
CACCATACGTGCACCTTGTT+CGG | + | chr6.2:17017176-17017195 | None:intergenic | 50.0% | |
CTTCATGCTACCGTTGCTAC+CGG | + | chr6.2:17017781-17017800 | None:intergenic | 50.0% | |
GCCCAACTCATCTTGGATGT+CGG | + | chr6.2:17017206-17017225 | None:intergenic | 50.0% | |
GCCGACATCCAAGATGAGTT+GGG | - | chr6.2:17017202-17017221 | MS.gene55505:CDS | 50.0% | |
GGCATTGTGCGTGAAACATG+CGG | - | chr6.2:17017698-17017717 | MS.gene55505:intron | 50.0% | |
TCCAACACGGTCTGATCAGA+TGG | + | chr6.2:17017627-17017646 | None:intergenic | 50.0% | |
TCCATCTGATCAGACCGTGT+TGG | - | chr6.2:17017623-17017642 | MS.gene55505:intron | 50.0% | |
! | GGCAGATGCTGTGTTGTTCT+TGG | - | chr6.2:17018019-17018038 | MS.gene55505:CDS | 50.0% |
CGAACAAGGTGCACGTATGG+TGG | - | chr6.2:17017174-17017193 | MS.gene55505:CDS | 55.0% | |
CGCCGACATCCAAGATGAGT+TGG | - | chr6.2:17017201-17017220 | MS.gene55505:CDS | 55.0% | |
CTGCATCTATTGGCAGCCAC+AGG | - | chr6.2:17017236-17017255 | MS.gene55505:CDS | 55.0% | |
GCGCATGTCTTTGCCGAACA+AGG | - | chr6.2:17017160-17017179 | MS.gene55505:CDS | 55.0% | |
GGCCTTGATCTTCGTGTGGA+TGG | - | chr6.2:17018068-17018087 | MS.gene55505:CDS | 55.0% | |
TGCCGAACAAGGTGCACGTA+TGG | - | chr6.2:17017171-17017190 | MS.gene55505:CDS | 55.0% | |
!! | CACTGGCCTTGATCTTCGTG+TGG | - | chr6.2:17018064-17018083 | MS.gene55505:CDS | 55.0% |
!! | ATGGTGGACGGTTGCGTGAG+GGG | - | chr6.2:17017729-17017748 | MS.gene55505:intron | 60.0% |
!! | ATTGTCACCGGAGGTGCCAG+CGG | - | chr6.2:17017121-17017140 | MS.gene55505:CDS | 60.0% |
!! | CAGCGGCATCGGCAAAGAGA+CGG | - | chr6.2:17017138-17017157 | MS.gene55505:CDS | 60.0% |
!! | GATGGTGGACGGTTGCGTGA+GGG | - | chr6.2:17017728-17017747 | MS.gene55505:intron | 60.0% |
CGTCTCTTTGCCGATGCCGC+TGG | + | chr6.2:17017140-17017159 | None:intergenic | 65.0% | |
GAAACATGCGGCGCGTGCGA+TGG | - | chr6.2:17017710-17017729 | MS.gene55505:intron | 65.0% | |
GCTAGCGTCGCCGGTAGCAA+CGG | - | chr6.2:17017768-17017787 | MS.gene55505:intron | 65.0% | |
GCTGGCACCTCCGGTGACAA+TGG | + | chr6.2:17017122-17017141 | None:intergenic | 65.0% | |
GTGTGCACAGCTAGCGTCGC+CGG | - | chr6.2:17017759-17017778 | MS.gene55505:intron | 65.0% | |
!! | CGATGGTGGACGGTTGCGTG+AGG | - | chr6.2:17017727-17017746 | MS.gene55505:intron | 65.0% |
ACATGCGGCGCGTGCGATGG+TGG | - | chr6.2:17017713-17017732 | MS.gene55505:intron | 70.0% | |
!! | ACCGGAGGTGCCAGCGGCAT+CGG | - | chr6.2:17017127-17017146 | MS.gene55505:CDS | 70.0% |
GCCGATGCCGCTGGCACCTC+CGG | + | chr6.2:17017131-17017150 | None:intergenic | 75.0% | |
!! | GCGGCGCGTGCGATGGTGGA+CGG | - | chr6.2:17017717-17017736 | MS.gene55505:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 17017067 | 17018127 | 17017067 | ID=MS.gene55505 |
chr6.2 | mRNA | 17017067 | 17018127 | 17017067 | ID=MS.gene55505.t1;Parent=MS.gene55505 |
chr6.2 | exon | 17017855 | 17018127 | 17017855 | ID=MS.gene55505.t1.exon1;Parent=MS.gene55505.t1 |
chr6.2 | CDS | 17017855 | 17018127 | 17017855 | ID=cds.MS.gene55505.t1;Parent=MS.gene55505.t1 |
chr6.2 | exon | 17017067 | 17017606 | 17017067 | ID=MS.gene55505.t1.exon2;Parent=MS.gene55505.t1 |
chr6.2 | CDS | 17017067 | 17017606 | 17017067 | ID=cds.MS.gene55505.t1;Parent=MS.gene55505.t1 |
Gene Sequence |
Protein sequence |