AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55505


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55505.t1 MTR_6g023910 97.778 270 6 0 1 270 1 270 0.0 536
MS.gene55505.t1 MTR_6g023610 82.900 269 46 0 1 269 1 269 1.68e-167 464
MS.gene55505.t1 MTR_6g023590 73.208 265 71 0 1 265 1 265 3.29e-144 405
MS.gene55505.t1 MTR_6g023990 72.556 266 72 1 1 265 1 266 7.68e-140 394
MS.gene55505.t1 MTR_6g023600 73.962 265 69 0 1 265 1 265 2.24e-139 393
MS.gene55505.t1 MTR_6g023950 73.180 261 70 0 1 261 1 261 3.58e-135 382
MS.gene55505.t1 MTR_6g023600 72.075 265 68 1 1 265 1 259 1.84e-132 375
MS.gene55505.t1 MTR_7g110130 50.593 253 124 1 9 261 2 253 7.59e-82 247
MS.gene55505.t1 MTR_2g090165 50.198 253 124 2 9 261 2 252 1.78e-81 246
MS.gene55505.t1 MTR_7g110140 47.826 253 130 2 9 261 2 252 2.22e-75 230
MS.gene55505.t1 MTR_7g105460 45.594 261 140 2 1 261 1 259 2.30e-74 228
MS.gene55505.t1 MTR_7g110160 46.640 253 115 2 9 261 2 234 2.24e-70 217
MS.gene55505.t1 MTR_4g052340 46.185 249 129 3 12 260 13 256 9.18e-70 216
MS.gene55505.t1 MTR_6g023940 57.944 214 28 3 1 214 1 152 3.11e-69 211
MS.gene55505.t1 MTR_4g052300 46.693 257 126 5 6 259 1 249 6.14e-69 214
MS.gene55505.t1 MTR_7g071680 46.154 273 119 8 9 259 25 291 3.38e-68 213
MS.gene55505.t1 MTR_4g052320 45.312 256 136 3 6 261 1 252 4.61e-68 212
MS.gene55505.t1 MTR_6g035395 48.000 250 115 3 12 261 4 238 1.13e-67 210
MS.gene55505.t1 MTR_4g052350 43.071 267 146 4 1 266 1 262 1.10e-65 206
MS.gene55505.t1 MTR_4g078630 42.481 266 142 3 12 270 18 279 2.82e-62 197
MS.gene55505.t1 MTR_7g107670 38.868 265 154 4 7 266 27 288 6.42e-58 187
MS.gene55505.t1 MTR_7g083870 40.698 258 140 6 12 261 34 286 1.87e-56 183
MS.gene55505.t1 MTR_7g105590 45.503 189 101 2 12 200 7 193 4.44e-53 171
MS.gene55505.t1 MTR_7g105580 39.200 250 132 3 12 261 7 236 4.66e-51 168
MS.gene55505.t1 MTR_4g084800 56.429 140 60 1 1 140 1 139 6.77e-51 164
MS.gene55505.t1 MTR_3g020670 38.722 266 154 4 3 261 6 269 6.15e-50 166
MS.gene55505.t1 MTR_3g113870 41.361 191 105 4 21 209 29 214 3.69e-45 152
MS.gene55505.t1 MTR_7g105570 34.137 249 111 2 13 261 21 216 1.10e-37 132
MS.gene55505.t1 MTR_7g113650 31.439 264 150 10 12 259 39 287 1.44e-27 108
MS.gene55505.t1 MTR_1g082760 33.080 263 153 9 9 259 36 287 2.05e-27 107
MS.gene55505.t1 MTR_7g094510 31.274 259 168 5 9 262 2 255 1.39e-26 104
MS.gene55505.t1 MTR_4g132850 31.474 251 159 6 12 259 6 246 1.61e-26 104
MS.gene55505.t1 MTR_3g085740 29.368 269 170 9 1 262 64 319 2.08e-26 105
MS.gene55505.t1 MTR_7g094520 31.783 258 166 6 10 262 8 260 2.21e-25 101
MS.gene55505.t1 MTR_4g131740 26.592 267 168 8 8 259 35 288 9.95e-22 92.4
MS.gene55505.t1 MTR_4g064887 30.370 270 164 8 1 259 1 257 3.20e-20 87.8
MS.gene55505.t1 MTR_7g105560 64.179 67 23 1 1 67 1 66 5.68e-20 84.3
MS.gene55505.t1 MTR_4g058810 27.600 250 164 7 13 252 11 253 1.45e-19 85.9
MS.gene55505.t1 MTR_1196s0010 31.102 254 152 9 16 262 277 514 5.14e-19 86.7
MS.gene55505.t1 MTR_1g068955 29.297 256 170 5 10 259 11 261 5.37e-19 84.7
MS.gene55505.t1 MTR_4g058840 27.200 250 165 7 13 252 11 253 1.37e-18 83.6
MS.gene55505.t1 MTR_4g058820 27.200 250 165 7 13 252 11 253 1.37e-18 83.6
MS.gene55505.t1 MTR_1g051165 26.437 261 172 7 12 258 13 267 2.74e-18 82.8
MS.gene55505.t1 MTR_7g063320 29.478 268 179 7 1 262 1 264 4.69e-18 81.6
MS.gene55505.t1 MTR_7g063270 28.030 264 177 8 4 261 7 263 5.51e-18 81.6
MS.gene55505.t1 MTR_3g068085 29.963 267 169 9 2 261 4 259 9.44e-18 80.9
MS.gene55505.t1 MTR_3g068070 28.889 270 166 11 3 261 5 259 2.52e-17 79.7
MS.gene55505.t1 MTR_7g063260 27.757 263 180 7 4 261 7 264 2.65e-17 79.7
MS.gene55505.t1 MTR_7g063390 27.778 270 180 8 1 261 1 264 1.31e-16 77.8
MS.gene55505.t1 MTR_4g064887 30.516 213 139 6 1 208 1 209 2.45e-16 76.3
MS.gene55505.t1 MTR_3g068175 27.341 267 162 8 9 259 13 263 8.26e-16 75.9
MS.gene55505.t1 MTR_3g068175 27.376 263 163 7 9 259 13 259 8.43e-16 75.5
MS.gene55505.t1 MTR_3g068065 28.740 254 167 8 13 261 17 261 1.17e-15 75.1
MS.gene55505.t1 MTR_7g063360 29.044 272 174 10 1 261 1 264 1.58e-15 74.7
MS.gene55505.t1 MTR_7g063330 25.769 260 186 5 5 261 7 262 1.82e-15 74.7
MS.gene55505.t1 MTR_4g086400 29.384 211 125 5 14 207 5 208 5.65e-15 74.7
MS.gene55505.t1 MTR_4g086410 29.858 211 124 5 14 207 5 208 1.70e-14 73.6
MS.gene55505.t1 MTR_3g068155 28.352 261 155 9 13 259 19 261 4.05e-14 70.9
MS.gene55505.t1 MTR_8g096580 27.805 205 138 5 16 217 48 245 9.10e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55505.t1 AT2G47140 49.012 253 127 2 9 261 2 252 1.17e-79 241
MS.gene55505.t1 AT2G47130 48.638 257 121 5 9 261 2 251 4.56e-74 227
MS.gene55505.t1 AT3G29260 48.249 257 122 5 9 261 2 251 1.72e-72 223
MS.gene55505.t1 AT2G47120 47.036 253 130 4 9 261 2 250 3.81e-72 222
MS.gene55505.t1 AT3G29250 47.656 256 126 5 9 261 2 252 1.38e-71 221
MS.gene55505.t1 AT3G29250 47.674 258 127 5 7 261 36 288 1.51e-71 222
MS.gene55505.t1 AT2G47120 46.800 250 129 4 12 261 6 251 6.28e-71 219
MS.gene55505.t1 AT3G29250 47.308 260 127 6 7 261 36 290 1.86e-69 216
MS.gene55505.t1 AT3G51680 42.599 277 137 5 1 259 20 292 4.53e-64 203
MS.gene55505.t1 AT3G26760 41.045 268 147 6 7 266 30 294 6.30e-60 192
MS.gene55505.t1 AT3G26770 39.844 256 145 5 10 259 38 290 1.22e-56 184
MS.gene55505.t1 AT1G52340 41.923 260 139 5 12 261 17 274 3.14e-55 179
MS.gene55505.t1 AT4G03140 40.000 255 145 4 12 261 77 328 1.19e-54 180
MS.gene55505.t1 AT3G42960 41.241 274 147 7 6 270 1 269 6.99e-52 171
MS.gene55505.t1 AT1G54870 31.716 268 160 9 4 259 75 331 1.52e-27 108
MS.gene55505.t1 AT1G54870 31.716 268 160 9 4 259 73 329 1.61e-27 108
MS.gene55505.t1 AT5G18210 32.075 265 153 7 13 262 8 260 2.32e-27 106
MS.gene55505.t1 AT3G03980 30.627 271 171 5 4 262 5 270 4.53e-26 103
MS.gene55505.t1 AT4G13180 30.000 270 173 7 1 262 1 262 1.57e-25 102
MS.gene55505.t1 AT3G04000 30.292 274 173 5 2 262 3 271 1.69e-25 102
MS.gene55505.t1 AT3G05260 29.478 268 171 8 4 262 28 286 2.11e-25 102
MS.gene55505.t1 AT5G18210 32.520 246 143 6 13 245 8 243 6.81e-24 97.8
MS.gene55505.t1 AT4G05530 31.325 249 162 6 12 259 8 248 3.75e-22 92.8
MS.gene55505.t1 AT1G24360 26.772 254 169 7 12 259 73 315 4.55e-21 90.9
MS.gene55505.t1 AT5G06060 29.259 270 157 9 7 261 3 253 2.46e-19 85.5
MS.gene55505.t1 AT3G46170 25.940 266 173 8 13 264 26 281 1.87e-17 80.5
MS.gene55505.t1 AT2G29340 29.167 264 149 9 13 259 7 249 2.39e-17 79.7
MS.gene55505.t1 AT3G55290 26.692 266 171 9 13 264 17 272 3.34e-17 79.7
MS.gene55505.t1 AT2G29340 29.167 264 149 9 13 259 7 249 3.36e-17 80.1
MS.gene55505.t1 AT3G55290 26.692 266 171 9 13 264 18 273 3.70e-17 79.7
MS.gene55505.t1 AT1G63380 26.437 261 179 7 13 264 17 273 7.26e-17 79.0
MS.gene55505.t1 AT1G63380 26.437 261 179 7 13 264 19 275 7.90e-17 78.6
MS.gene55505.t1 AT1G63380 26.437 261 179 7 13 264 15 271 8.13e-17 78.6
MS.gene55505.t1 AT1G63380 26.437 261 179 7 13 264 22 278 9.89e-17 78.6
MS.gene55505.t1 AT2G29310 29.699 266 149 11 13 261 7 251 1.81e-16 77.4
MS.gene55505.t1 AT2G29360 28.947 266 169 7 7 261 4 260 3.26e-16 76.6
MS.gene55505.t1 AT2G29150 30.037 273 154 11 3 259 6 257 3.56e-16 76.6
MS.gene55505.t1 AT1G07450 30.888 259 154 12 13 261 8 251 8.76e-16 75.5
MS.gene55505.t1 AT1G62610 25.670 261 181 7 13 264 15 271 1.25e-15 75.5
MS.gene55505.t1 AT1G62610 25.670 261 181 7 13 264 14 270 1.28e-15 75.1
MS.gene55505.t1 AT1G62610 25.670 261 181 7 13 264 13 269 1.37e-15 75.1
MS.gene55505.t1 AT5G50600 26.733 202 142 4 13 212 45 242 1.46e-15 75.9
MS.gene55505.t1 AT5G50700 26.733 202 142 4 13 212 45 242 1.46e-15 75.9
MS.gene55505.t1 AT1G62610 25.670 261 181 7 13 264 19 275 1.52e-15 75.1
MS.gene55505.t1 AT5G50770 30.481 187 122 5 13 196 45 226 1.75e-15 75.5
MS.gene55505.t1 AT2G30670 26.295 251 173 7 13 259 7 249 3.14e-15 73.9
MS.gene55505.t1 AT3G55310 26.568 271 165 11 13 264 17 272 4.04e-15 73.9
MS.gene55505.t1 AT2G29340 29.858 211 119 7 13 209 7 202 5.58e-15 72.0
MS.gene55505.t1 AT2G29340 29.858 211 119 7 13 209 7 202 5.58e-15 72.0
MS.gene55505.t1 AT5G50690 29.670 182 113 5 10 184 42 215 8.91e-15 72.4
MS.gene55505.t1 AT5G50590 29.670 182 113 5 10 184 42 215 8.91e-15 72.4
MS.gene55505.t1 AT2G29330 28.287 251 168 8 13 259 7 249 1.23e-14 72.4
MS.gene55505.t1 AT5G50690 29.834 181 114 5 10 184 42 215 1.75e-14 72.4
MS.gene55505.t1 AT5G50590 29.834 181 114 5 10 184 42 215 1.75e-14 72.4
MS.gene55505.t1 AT3G47360 27.273 198 130 7 13 204 45 234 3.01e-14 71.6
MS.gene55505.t1 AT3G47350 24.873 197 136 5 13 204 44 233 3.71e-14 71.6
MS.gene55505.t1 AT3G47350 24.873 197 136 5 13 204 44 233 4.19e-14 71.2
MS.gene55505.t1 AT2G29370 28.309 272 165 9 3 261 6 260 7.07e-14 70.1
MS.gene55505.t1 AT1G49670 30.049 203 118 6 18 203 9 204 9.54e-14 71.2
MS.gene55505.t1 AT2G29260 28.571 252 166 8 13 259 68 310 1.08e-13 70.5
MS.gene55505.t1 AT1G49670 30.049 203 118 6 18 203 9 204 1.13e-13 71.2
MS.gene55505.t1 AT2G29310 30.000 210 118 8 13 208 7 201 1.35e-12 65.5
MS.gene55505.t1 AT2G29320 27.799 259 160 10 13 259 13 256 3.59e-12 65.5
MS.gene55505.t1 AT1G07440 27.273 253 167 8 13 259 12 253 5.29e-12 64.7
MS.gene55505.t1 AT3G47350 31.132 106 67 2 13 116 44 145 5.50e-12 64.7
MS.gene55505.t1 AT2G29350 29.612 206 126 7 8 204 10 205 7.57e-12 63.9
MS.gene55505.t1 AT2G29310 28.788 198 124 8 70 261 63 249 4.67e-11 62.0

Find 62 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTCGAAGCACGCGATAAT+AGG 0.212241 6.2:-17017356 MS.gene55505:CDS
AACTTGCAAAGCATGGAATA+AGG 0.289760 6.2:-17017310 MS.gene55505:CDS
GGCAGATGCTGTGTTGTTCT+TGG 0.317529 6.2:-17017153 MS.gene55505:CDS
CACCATACGTGCACCTTGTT+CGG 0.329714 6.2:+17017999 None:intergenic
CAATCAACGGTCAATACTTA+TGG 0.333742 6.2:-17017859 MS.gene55505:CDS
CGTCTCTTTGCCGATGCCGC+TGG 0.343665 6.2:+17018035 None:intergenic
CACTCACTAACAGCAGTCTT+AGG 0.352793 6.2:-17018092 MS.gene55505:CDS
GATATTATGTTTAGCAATGC+TGG 0.362324 6.2:-17017581 MS.gene55505:CDS
CTTCATTGCCCAACTCATCT+TGG 0.372263 6.2:+17017962 None:intergenic
GCCGATGCCGCTGGCACCTC+CGG 0.378274 6.2:+17018044 None:intergenic
AATGAAGTGGCTGCATCTAT+TGG 0.402249 6.2:-17017946 MS.gene55505:CDS
TGTCGAAGCACGCGATAATA+GGG 0.426974 6.2:-17017355 MS.gene55505:CDS
AGTGACAAAGTCAGATTCAT+TGG 0.438975 6.2:+17017127 None:intergenic
ACCGGAGGTGCCAGCGGCAT+CGG 0.446928 6.2:-17018045 MS.gene55505:CDS
GAACGTTAACTGAGAACAAA+TGG 0.454425 6.2:+17017504 None:intergenic
TTGTTCTCAGTTAACGTTCG+AGG 0.458461 6.2:-17017500 MS.gene55505:CDS
GTGGATGGTAGCTTTCTTGA+TGG 0.469944 6.2:-17017089 MS.gene55505:CDS
CTGCATCTATTGGCAGCCAC+AGG 0.470696 6.2:-17017936 MS.gene55505:CDS
GTGAATTGTGTATCACCAAA+TGG 0.474979 6.2:-17017287 MS.gene55505:CDS
CGCCGACATCCAAGATGAGT+TGG 0.475014 6.2:-17017971 MS.gene55505:CDS
CTCAGTTAACGTTCGAGGAA+TGG 0.475650 6.2:-17017495 MS.gene55505:CDS
GGAGAATACAAGAGGTTGGA+AGG 0.477377 6.2:-17017200 MS.gene55505:CDS
ACTTGCAAAGCATGGAATAA+GGG 0.486045 6.2:-17017309 MS.gene55505:CDS
AACAGCAGTCTTAGGTTAGC+AGG 0.489763 6.2:-17018084 MS.gene55505:CDS
TCTAGCAATTTCATAGTCAA+TGG 0.495865 6.2:+17017254 None:intergenic
GGCCTTGATCTTCGTGTGGA+TGG 0.499300 6.2:-17017104 MS.gene55505:CDS
GAAACATGCGGCGCGTGCGA+TGG 0.507406 6.2:-17017462 MS.gene55505:CDS
AATGGTGTTGCTAATCCATT+TGG 0.510778 6.2:+17017272 None:intergenic
TCCAACACGGTCTGATCAGA+TGG 0.513391 6.2:+17017548 None:intergenic
ATATTATGTTTAGCAATGCT+GGG 0.517928 6.2:-17017580 MS.gene55505:CDS
GGCAAAATAGCCATTGTCAC+CGG 0.521032 6.2:-17018063 MS.gene55505:CDS
ATGGTGGACGGTTGCGTGAG+GGG 0.522782 6.2:-17017443 MS.gene55505:CDS
AACGGTCAATACTTATGGAC+AGG 0.523815 6.2:-17017854 MS.gene55505:intron
TGCCGAACAAGGTGCACGTA+TGG 0.526292 6.2:-17018001 MS.gene55505:CDS
AATGAATCTGACTTTGTCAC+TGG 0.530339 6.2:-17017125 MS.gene55505:CDS
GCGCATGTCTTTGCCGAACA+AGG 0.531534 6.2:-17018012 MS.gene55505:CDS
AGTAAGCAACTTGCAAAGCA+TGG 0.531560 6.2:-17017317 MS.gene55505:CDS
GCCGACATCCAAGATGAGTT+GGG 0.536561 6.2:-17017970 MS.gene55505:CDS
GTGTGCACAGCTAGCGTCGC+CGG 0.540426 6.2:-17017413 MS.gene55505:CDS
CTTCATGCTACCGTTGCTAC+CGG 0.541833 6.2:+17017394 None:intergenic
GCTGGCACCTCCGGTGACAA+TGG 0.548752 6.2:+17018053 None:intergenic
GATGGTGGACGGTTGCGTGA+GGG 0.557625 6.2:-17017444 MS.gene55505:CDS
TACCATCCACACGAAGATCA+AGG 0.559297 6.2:+17017102 None:intergenic
CACTGGCCTTGATCTTCGTG+TGG 0.560496 6.2:-17017108 MS.gene55505:CDS
ACATGCGGCGCGTGCGATGG+TGG 0.561353 6.2:-17017459 MS.gene55505:CDS
ATACAAGAGGTTGGAAGGAG+TGG 0.561860 6.2:-17017195 MS.gene55505:CDS
CGATGGTGGACGGTTGCGTG+AGG 0.569245 6.2:-17017445 MS.gene55505:CDS
CGAACAAGGTGCACGTATGG+TGG 0.575204 6.2:-17017998 MS.gene55505:CDS
GCCCAACTCATCTTGGATGT+CGG 0.577520 6.2:+17017969 None:intergenic
ACTATGAAATTGCTAGATGC+AGG 0.589183 6.2:-17017248 MS.gene55505:CDS
ATTGTCACCGGAGGTGCCAG+CGG 0.592750 6.2:-17018051 MS.gene55505:CDS
GCGGCGCGTGCGATGGTGGA+CGG 0.599914 6.2:-17017455 MS.gene55505:CDS
TCCATCTGATCAGACCGTGT+TGG 0.608267 6.2:-17017549 MS.gene55505:CDS
CGCTACATCACAATGAACAT+AGG 0.610262 6.2:+17017909 None:intergenic
GCTAGCGTCGCCGGTAGCAA+CGG 0.612378 6.2:-17017404 MS.gene55505:CDS
CAGCGGCATCGGCAAAGAGA+CGG 0.625686 6.2:-17018034 MS.gene55505:CDS
AGATGAGTTGGGCAATGAAG+TGG 0.652574 6.2:-17017959 MS.gene55505:CDS
GGCATTGTGCGTGAAACATG+CGG 0.656257 6.2:-17017474 MS.gene55505:CDS
GGTTCTCAGCACTAAACATG+TGG 0.675466 6.2:-17017174 MS.gene55505:CDS
AAAATAGCCATTGTCACCGG+AGG 0.684966 6.2:-17018060 MS.gene55505:CDS
AATGAACATAGGTGCACCTG+TGG 0.691741 6.2:+17017920 None:intergenic
AGAAATGTCGAATTCCAACA+CGG 0.703987 6.2:+17017535 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAACATATTATCTATCTT+TGG + chr6.2:17017522-17017541 None:intergenic 20.0%
! ATATTATGTTTAGCAATGCT+GGG - chr6.2:17017592-17017611 MS.gene55505:intron 25.0%
! TTGTTTAGACAAATGATTCA+TGG - chr6.2:17017449-17017468 MS.gene55505:CDS 25.0%
!!! ACTTATTTTTTTTCCACAAC+AGG - chr6.2:17017566-17017585 MS.gene55505:CDS 25.0%
AACATAATATCTACCTGTTG+TGG + chr6.2:17017582-17017601 None:intergenic 30.0%
CAAAAATCTCGTTCAATCAA+CGG - chr6.2:17017300-17017319 MS.gene55505:CDS 30.0%
GATATTATGTTTAGCAATGC+TGG - chr6.2:17017591-17017610 MS.gene55505:intron 30.0%
GGACAGGTAAATAATAACTA+AGG - chr6.2:17017334-17017353 MS.gene55505:CDS 30.0%
TCTAGCAATTTCATAGTCAA+TGG + chr6.2:17017921-17017940 None:intergenic 30.0%
!! TGATTTTTGGAGAATACAAG+AGG - chr6.2:17017964-17017983 MS.gene55505:CDS 30.0%
!!! GAGACAGTTGATTTGATTTT+TGG - chr6.2:17017951-17017970 MS.gene55505:CDS 30.0%
AACTTGCAAAGCATGGAATA+AGG - chr6.2:17017862-17017881 MS.gene55505:CDS 35.0%
AATGAATCTGACTTTGTCAC+TGG - chr6.2:17018047-17018066 MS.gene55505:CDS 35.0%
ACTATGAAATTGCTAGATGC+AGG - chr6.2:17017924-17017943 MS.gene55505:CDS 35.0%
ACTTGCAAAGCATGGAATAA+GGG - chr6.2:17017863-17017882 MS.gene55505:CDS 35.0%
AGAAATGTCGAATTCCAACA+CGG + chr6.2:17017640-17017659 None:intergenic 35.0%
AGTGACAAAGTCAGATTCAT+TGG + chr6.2:17018048-17018067 None:intergenic 35.0%
CAATCAACGGTCAATACTTA+TGG - chr6.2:17017313-17017332 MS.gene55505:CDS 35.0%
GAACGTTAACTGAGAACAAA+TGG + chr6.2:17017671-17017690 None:intergenic 35.0%
GTGAATTGTGTATCACCAAA+TGG - chr6.2:17017885-17017904 MS.gene55505:CDS 35.0%
!! AATGGTGTTGCTAATCCATT+TGG + chr6.2:17017903-17017922 None:intergenic 35.0%
!! TTTTGGAGAATACAAGAGGT+TGG - chr6.2:17017968-17017987 MS.gene55505:CDS 35.0%
AACGGTCAATACTTATGGAC+AGG - chr6.2:17017318-17017337 MS.gene55505:CDS 40.0%
AATGAAGTGGCTGCATCTAT+TGG - chr6.2:17017226-17017245 MS.gene55505:CDS 40.0%
AGTAAGCAACTTGCAAAGCA+TGG - chr6.2:17017855-17017874 MS.gene55505:CDS 40.0%
CGCTACATCACAATGAACAT+AGG + chr6.2:17017266-17017285 None:intergenic 40.0%
TTGTTCTCAGTTAACGTTCG+AGG - chr6.2:17017672-17017691 MS.gene55505:intron 40.0%
AAAATAGCCATTGTCACCGG+AGG - chr6.2:17017112-17017131 MS.gene55505:CDS 45.0%
AACAGCAGTCTTAGGTTAGC+AGG - chr6.2:17017088-17017107 MS.gene55505:CDS 45.0%
AATGAACATAGGTGCACCTG+TGG + chr6.2:17017255-17017274 None:intergenic 45.0%
ATACAAGAGGTTGGAAGGAG+TGG - chr6.2:17017977-17017996 MS.gene55505:CDS 45.0%
ATGTCGAAGCACGCGATAAT+AGG - chr6.2:17017816-17017835 MS.gene55505:intron 45.0%
CACTCACTAACAGCAGTCTT+AGG - chr6.2:17017080-17017099 MS.gene55505:CDS 45.0%
CTCAGTTAACGTTCGAGGAA+TGG - chr6.2:17017677-17017696 MS.gene55505:intron 45.0%
CTTCATTGCCCAACTCATCT+TGG + chr6.2:17017213-17017232 None:intergenic 45.0%
GGAGAATACAAGAGGTTGGA+AGG - chr6.2:17017972-17017991 MS.gene55505:CDS 45.0%
GGCAAAATAGCCATTGTCAC+CGG - chr6.2:17017109-17017128 MS.gene55505:CDS 45.0%
GGTTCTCAGCACTAAACATG+TGG - chr6.2:17017998-17018017 MS.gene55505:CDS 45.0%
GTGGATGGTAGCTTTCTTGA+TGG - chr6.2:17018083-17018102 MS.gene55505:CDS 45.0%
TACCATCCACACGAAGATCA+AGG + chr6.2:17018073-17018092 None:intergenic 45.0%
TGTCGAAGCACGCGATAATA+GGG - chr6.2:17017817-17017836 MS.gene55505:intron 45.0%
! AGATGAGTTGGGCAATGAAG+TGG - chr6.2:17017213-17017232 MS.gene55505:CDS 45.0%
CACCATACGTGCACCTTGTT+CGG + chr6.2:17017176-17017195 None:intergenic 50.0%
CTTCATGCTACCGTTGCTAC+CGG + chr6.2:17017781-17017800 None:intergenic 50.0%
GCCCAACTCATCTTGGATGT+CGG + chr6.2:17017206-17017225 None:intergenic 50.0%
GCCGACATCCAAGATGAGTT+GGG - chr6.2:17017202-17017221 MS.gene55505:CDS 50.0%
GGCATTGTGCGTGAAACATG+CGG - chr6.2:17017698-17017717 MS.gene55505:intron 50.0%
TCCAACACGGTCTGATCAGA+TGG + chr6.2:17017627-17017646 None:intergenic 50.0%
TCCATCTGATCAGACCGTGT+TGG - chr6.2:17017623-17017642 MS.gene55505:intron 50.0%
! GGCAGATGCTGTGTTGTTCT+TGG - chr6.2:17018019-17018038 MS.gene55505:CDS 50.0%
CGAACAAGGTGCACGTATGG+TGG - chr6.2:17017174-17017193 MS.gene55505:CDS 55.0%
CGCCGACATCCAAGATGAGT+TGG - chr6.2:17017201-17017220 MS.gene55505:CDS 55.0%
CTGCATCTATTGGCAGCCAC+AGG - chr6.2:17017236-17017255 MS.gene55505:CDS 55.0%
GCGCATGTCTTTGCCGAACA+AGG - chr6.2:17017160-17017179 MS.gene55505:CDS 55.0%
GGCCTTGATCTTCGTGTGGA+TGG - chr6.2:17018068-17018087 MS.gene55505:CDS 55.0%
TGCCGAACAAGGTGCACGTA+TGG - chr6.2:17017171-17017190 MS.gene55505:CDS 55.0%
!! CACTGGCCTTGATCTTCGTG+TGG - chr6.2:17018064-17018083 MS.gene55505:CDS 55.0%
!! ATGGTGGACGGTTGCGTGAG+GGG - chr6.2:17017729-17017748 MS.gene55505:intron 60.0%
!! ATTGTCACCGGAGGTGCCAG+CGG - chr6.2:17017121-17017140 MS.gene55505:CDS 60.0%
!! CAGCGGCATCGGCAAAGAGA+CGG - chr6.2:17017138-17017157 MS.gene55505:CDS 60.0%
!! GATGGTGGACGGTTGCGTGA+GGG - chr6.2:17017728-17017747 MS.gene55505:intron 60.0%
CGTCTCTTTGCCGATGCCGC+TGG + chr6.2:17017140-17017159 None:intergenic 65.0%
GAAACATGCGGCGCGTGCGA+TGG - chr6.2:17017710-17017729 MS.gene55505:intron 65.0%
GCTAGCGTCGCCGGTAGCAA+CGG - chr6.2:17017768-17017787 MS.gene55505:intron 65.0%
GCTGGCACCTCCGGTGACAA+TGG + chr6.2:17017122-17017141 None:intergenic 65.0%
GTGTGCACAGCTAGCGTCGC+CGG - chr6.2:17017759-17017778 MS.gene55505:intron 65.0%
!! CGATGGTGGACGGTTGCGTG+AGG - chr6.2:17017727-17017746 MS.gene55505:intron 65.0%
ACATGCGGCGCGTGCGATGG+TGG - chr6.2:17017713-17017732 MS.gene55505:intron 70.0%
!! ACCGGAGGTGCCAGCGGCAT+CGG - chr6.2:17017127-17017146 MS.gene55505:CDS 70.0%
GCCGATGCCGCTGGCACCTC+CGG + chr6.2:17017131-17017150 None:intergenic 75.0%
!! GCGGCGCGTGCGATGGTGGA+CGG - chr6.2:17017717-17017736 MS.gene55505:intron 75.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 17017067 17018127 17017067 ID=MS.gene55505
chr6.2 mRNA 17017067 17018127 17017067 ID=MS.gene55505.t1;Parent=MS.gene55505
chr6.2 exon 17017855 17018127 17017855 ID=MS.gene55505.t1.exon1;Parent=MS.gene55505.t1
chr6.2 CDS 17017855 17018127 17017855 ID=cds.MS.gene55505.t1;Parent=MS.gene55505.t1
chr6.2 exon 17017067 17017606 17017067 ID=MS.gene55505.t1.exon2;Parent=MS.gene55505.t1
chr6.2 CDS 17017067 17017606 17017067 ID=cds.MS.gene55505.t1;Parent=MS.gene55505.t1
Gene Sequence

>MS.gene55505

ATGGCAGAATCTTCACTCACTAACAGCAGTCTTAGGTTAGCAGGCAAAATAGCCATTGTCACCGGAGGTGCCAGCGGCATCGGCAAAGAGACGGCGCATGTCTTTGCCGAACAAGGTGCACGTATGGTGGTAATCGCCGACATCCAAGATGAGTTGGGCAATGAAGTGGCTGCATCTATTGGCAGCCACAGGTGCACCTATGTTCATTGTGATGTAGCGAACGAAGATCAAGTCAAAAATCTCGTTCAATCAACGGTCAATACTTATGGACAGGTAAATAATAACTAAGGTTAAATATGTTTTTTTTTATCACAACTTGTATTTTGAAATTTTCTTTTTTATCTTTATAAAAAAATAGTACTTTTAATTCTTCGAAATATCTTTGTTTAGACAAATGATTCATGGTATTTTTTAATAGTTATATATGTTTAAAACATTATAAAAAAGTTCATCCAAAGATAGATAATATGTTATGTGATTTTTTTATTTAAAAGCAATCACTTATTTTTTTTCCACAACAGGTAGATATTATGTTTAGCAATGCTGGGATTGCAAGTCCATCTGATCAGACCGTGTTGGAATTCGACATTTCTCAAGCTGACCATTTGTTCTCAGTTAACGTTCGAGGAATGGCATTGTGCGTGAAACATGCGGCGCGTGCGATGGTGGACGGTTGCGTGAGGGGTAGCATTGTGTGCACAGCTAGCGTCGCCGGTAGCAACGGTAGCATGAAGTTAACAGATTACGTAATGTCGAAGCACGCGATAATAGGGCTGATGCGTTCAGCTAGTAAGCAACTTGCAAAGCATGGAATAAGGGTGAATTGTGTATCACCAAATGGATTAGCAACACCATTGACTATGAAATTGCTAGATGCAGGTGAAGAGACAGTTGATTTGATTTTTGGAGAATACAAGAGGTTGGAAGGAGTGGTTCTCAGCACTAAACATGTGGCAGATGCTGTGTTGTTCTTGGTATCCAATGAATCTGACTTTGTCACTGGCCTTGATCTTCGTGTGGATGGTAGCTTTCTTGATGGCAAATCTGAACTAGTATTTTAA

Protein sequence

>MS.gene55505.t1

MAESSLTNSSLRLAGKIAIVTGGASGIGKETAHVFAEQGARMVVIADIQDELGNEVAASIGSHRCTYVHCDVANEDQVKNLVQSTVNTYGQVDIMFSNAGIASPSDQTVLEFDISQADHLFSVNVRGMALCVKHAARAMVDGCVRGSIVCTASVAGSNGSMKLTDYVMSKHAIIGLMRSASKQLAKHGIRVNCVSPNGLATPLTMKLLDAGEETVDLIFGEYKRLEGVVLSTKHVADAVLFLVSNESDFVTGLDLRVDGSFLDGKSELVF