Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75614.t1 | XP_003601777.1 | 96.6 | 205 | 5 | 1 | 1 | 203 | 1 | 205 | 6.70E-101 | 376.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75614.t1 | G7JBY5 | 96.6 | 205 | 5 | 1 | 1 | 203 | 1 | 205 | 4.9e-101 | 376.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene75614 | 0.806519 | 7.91E-50 | -1.69E-46 |
| MS.gene049150 | MS.gene75614 | 0.842031 | 3.31E-58 | -1.69E-46 |
| MS.gene049151 | MS.gene75614 | 0.849833 | 2.51E-60 | -1.69E-46 |
| MS.gene049153 | MS.gene75614 | 0.841123 | 5.75E-58 | -1.69E-46 |
| MS.gene049260 | MS.gene75614 | 0.819959 | 8.83E-53 | -1.69E-46 |
| MS.gene049346 | MS.gene75614 | 0.817029 | 4.08E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene75614 | 0.849336 | 3.45E-60 | -1.69E-46 |
| MS.gene049758 | MS.gene75614 | 0.895995 | 5.64E-76 | -1.69E-46 |
| MS.gene049910 | MS.gene75614 | 0.863464 | 2.44E-64 | -1.69E-46 |
| MS.gene049915 | MS.gene75614 | 0.836687 | 8.09E-57 | -1.69E-46 |
| MS.gene050128 | MS.gene75614 | 0.853445 | 2.38E-61 | -1.69E-46 |
| MS.gene050226 | MS.gene75614 | 0.841978 | 3.42E-58 | -1.69E-46 |
| MS.gene050227 | MS.gene75614 | 0.835966 | 1.23E-56 | -1.69E-46 |
| MS.gene050228 | MS.gene75614 | 0.833366 | 5.56E-56 | -1.69E-46 |
| MS.gene050301 | MS.gene75614 | 0.852623 | 4.09E-61 | -1.69E-46 |
| MS.gene050397 | MS.gene75614 | 0.821479 | 3.95E-53 | -1.69E-46 |
| MS.gene050406 | MS.gene75614 | 0.82453 | 7.68E-54 | -1.69E-46 |
| MS.gene050426 | MS.gene75614 | -0.826053 | 3.35E-54 | -1.69E-46 |
| MS.gene050464 | MS.gene75614 | 0.838958 | 2.11E-57 | -1.69E-46 |
| MS.gene050529 | MS.gene75614 | 0.84265 | 2.27E-58 | -1.69E-46 |
| MS.gene050558 | MS.gene75614 | 0.814626 | 1.40E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene75614 | -0.850459 | 1.68E-60 | -1.69E-46 |
| MS.gene050642 | MS.gene75614 | 0.872598 | 2.81E-67 | -1.69E-46 |
| MS.gene050670 | MS.gene75614 | 0.816804 | 4.58E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene75614 | 0.800601 | 1.34E-48 | -1.69E-46 |
| MS.gene050763 | MS.gene75614 | 0.802811 | 4.70E-49 | -1.69E-46 |
| MS.gene050971 | MS.gene75614 | 0.801942 | 7.10E-49 | -1.69E-46 |
| MS.gene05119 | MS.gene75614 | -0.827603 | 1.43E-54 | -1.69E-46 |
| MS.gene051471 | MS.gene75614 | 0.816016 | 6.87E-52 | -1.69E-46 |
| MS.gene051535 | MS.gene75614 | 0.841648 | 4.18E-58 | -1.69E-46 |
| MS.gene051582 | MS.gene75614 | 0.817827 | 2.69E-52 | -1.69E-46 |
| MS.gene051662 | MS.gene75614 | 0.82411 | 9.64E-54 | -1.69E-46 |
| MS.gene051663 | MS.gene75614 | 0.847055 | 1.47E-59 | -1.69E-46 |
| MS.gene051860 | MS.gene75614 | 0.860993 | 1.40E-63 | -1.69E-46 |
| MS.gene051983 | MS.gene75614 | 0.88785 | 9.93E-73 | -1.69E-46 |
| MS.gene052011 | MS.gene75614 | -0.808513 | 2.98E-50 | -1.69E-46 |
| MS.gene052077 | MS.gene75614 | 0.893535 | 5.74E-75 | -1.69E-46 |
| MS.gene052078 | MS.gene75614 | 0.80769 | 4.47E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene75614 | 0.810713 | 1.01E-50 | -1.69E-46 |
| MS.gene052178 | MS.gene75614 | 0.840439 | 8.69E-58 | -1.69E-46 |
| MS.gene052188 | MS.gene75614 | 0.868531 | 6.09E-66 | -1.69E-46 |
| MS.gene052253 | MS.gene75614 | 0.831699 | 1.44E-55 | -1.69E-46 |
| MS.gene052255 | MS.gene75614 | 0.805614 | 1.23E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene75614 | -0.809137 | 2.20E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene75614 | 0.825244 | 5.21E-54 | -1.69E-46 |
| MS.gene052340 | MS.gene75614 | 0.868001 | 9.03E-66 | -1.69E-46 |
| MS.gene052426 | MS.gene75614 | 0.814822 | 1.27E-51 | -1.69E-46 |
| MS.gene053073 | MS.gene75614 | 0.842215 | 2.96E-58 | -1.69E-46 |
| MS.gene05316 | MS.gene75614 | 0.859066 | 5.35E-63 | -1.69E-46 |
| MS.gene053494 | MS.gene75614 | 0.860194 | 2.45E-63 | -1.69E-46 |
| MS.gene053557 | MS.gene75614 | 0.851985 | 6.21E-61 | -1.69E-46 |
| MS.gene053559 | MS.gene75614 | 0.843343 | 1.49E-58 | -1.69E-46 |
| MS.gene053577 | MS.gene75614 | 0.814951 | 1.19E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene75614 | 0.904296 | 1.42E-79 | -1.69E-46 |
| MS.gene053907 | MS.gene75614 | 0.812415 | 4.29E-51 | -1.69E-46 |
| MS.gene053928 | MS.gene75614 | 0.840627 | 7.76E-58 | -1.69E-46 |
| MS.gene054123 | MS.gene75614 | 0.827351 | 1.64E-54 | -1.69E-46 |
| MS.gene054183 | MS.gene75614 | 0.820336 | 7.24E-53 | -1.69E-46 |
| MS.gene054349 | MS.gene75614 | 0.859527 | 3.89E-63 | -1.69E-46 |
| MS.gene054379 | MS.gene75614 | 0.814837 | 1.26E-51 | -1.69E-46 |
| MS.gene054473 | MS.gene75614 | 0.805934 | 1.05E-49 | -1.69E-46 |
| MS.gene054542 | MS.gene75614 | 0.832282 | 1.03E-55 | -1.69E-46 |
| MS.gene054918 | MS.gene75614 | 0.804687 | 1.92E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene75614 | 0.883726 | 3.51E-71 | -1.69E-46 |
| MS.gene054942 | MS.gene75614 | 0.812369 | 4.39E-51 | -1.69E-46 |
| MS.gene054983 | MS.gene75614 | 0.837522 | 4.95E-57 | -1.69E-46 |
| MS.gene05510 | MS.gene75614 | 0.806548 | 7.80E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene75614 | 0.827478 | 1.53E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene75614 | 0.811705 | 6.13E-51 | -1.69E-46 |
| MS.gene055390 | MS.gene75614 | 0.801588 | 8.39E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene75614 | 0.851697 | 7.50E-61 | -1.69E-46 |
| MS.gene055428 | MS.gene75614 | 0.829508 | 4.95E-55 | -1.69E-46 |
| MS.gene05553 | MS.gene75614 | 0.859293 | 4.57E-63 | -1.69E-46 |
| MS.gene055604 | MS.gene75614 | 0.825593 | 4.31E-54 | -1.69E-46 |
| MS.gene055701 | MS.gene75614 | 0.828755 | 7.54E-55 | -1.69E-46 |
| MS.gene055712 | MS.gene75614 | 0.833597 | 4.87E-56 | -1.69E-46 |
| MS.gene055859 | MS.gene75614 | 0.818444 | 1.95E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene75614 | 0.834132 | 3.58E-56 | -1.69E-46 |
| MS.gene056447 | MS.gene75614 | 0.810542 | 1.09E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene75614 | 0.84013 | 1.05E-57 | -1.69E-46 |
| MS.gene056659 | MS.gene75614 | 0.81981 | 9.55E-53 | -1.69E-46 |
| MS.gene056723 | MS.gene75614 | 0.845566 | 3.75E-59 | -1.69E-46 |
| MS.gene056875 | MS.gene75614 | 0.82384 | 1.12E-53 | -1.69E-46 |
| MS.gene056899 | MS.gene75614 | -0.831808 | 1.35E-55 | -1.69E-46 |
| MS.gene056979 | MS.gene75614 | 0.881432 | 2.41E-70 | -1.69E-46 |
| MS.gene05702 | MS.gene75614 | 0.845548 | 3.79E-59 | -1.69E-46 |
| MS.gene057121 | MS.gene75614 | 0.838879 | 2.21E-57 | -1.69E-46 |
| MS.gene057396 | MS.gene75614 | 0.858925 | 5.89E-63 | -1.69E-46 |
| MS.gene057439 | MS.gene75614 | 0.813473 | 2.52E-51 | -1.69E-46 |
| MS.gene057448 | MS.gene75614 | 0.851673 | 7.61E-61 | -1.69E-46 |
| MS.gene057449 | MS.gene75614 | 0.840229 | 9.86E-58 | -1.69E-46 |
| MS.gene057450 | MS.gene75614 | 0.852401 | 4.73E-61 | -1.69E-46 |
| MS.gene057469 | MS.gene75614 | 0.81573 | 7.96E-52 | -1.69E-46 |
| MS.gene057750 | MS.gene75614 | 0.814427 | 1.55E-51 | -1.69E-46 |
| MS.gene057754 | MS.gene75614 | 0.840422 | 8.78E-58 | -1.69E-46 |
| MS.gene058002 | MS.gene75614 | 0.86682 | 2.16E-65 | -1.69E-46 |
| MS.gene058082 | MS.gene75614 | 0.800804 | 1.21E-48 | -1.69E-46 |
| MS.gene05811 | MS.gene75614 | 0.855965 | 4.43E-62 | -1.69E-46 |
| MS.gene058142 | MS.gene75614 | 0.857032 | 2.15E-62 | -1.69E-46 |
| MS.gene058276 | MS.gene75614 | 0.827185 | 1.80E-54 | -1.69E-46 |
| MS.gene058371 | MS.gene75614 | 0.804421 | 2.18E-49 | -1.69E-46 |
| MS.gene058433 | MS.gene75614 | 0.800151 | 1.65E-48 | -1.69E-46 |
| MS.gene058435 | MS.gene75614 | 0.854129 | 1.51E-61 | -1.69E-46 |
| MS.gene058710 | MS.gene75614 | 0.835074 | 2.07E-56 | -1.69E-46 |
| MS.gene058749 | MS.gene75614 | 0.832955 | 7.03E-56 | -1.69E-46 |
| MS.gene058845 | MS.gene75614 | 0.846306 | 2.36E-59 | -1.69E-46 |
| MS.gene05886 | MS.gene75614 | 0.809374 | 1.95E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene75614 | 0.817249 | 3.64E-52 | -1.69E-46 |
| MS.gene058949 | MS.gene75614 | 0.823536 | 1.31E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene75614 | 0.872539 | 2.94E-67 | -1.69E-46 |
| MS.gene059247 | MS.gene75614 | 0.812093 | 5.04E-51 | -1.69E-46 |
| MS.gene059285 | MS.gene75614 | 0.872404 | 3.26E-67 | -1.69E-46 |
| MS.gene059294 | MS.gene75614 | 0.805637 | 1.21E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene75614 | 0.816947 | 4.25E-52 | -1.69E-46 |
| MS.gene059518 | MS.gene75614 | 0.819505 | 1.12E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene75614 | 0.839339 | 1.68E-57 | -1.69E-46 |
| MS.gene059676 | MS.gene75614 | 0.806238 | 9.06E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene75614 | 0.820893 | 5.39E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene75614 | 0.825214 | 5.29E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene75614 | 0.820228 | 7.66E-53 | -1.69E-46 |
| MS.gene059788 | MS.gene75614 | 0.814592 | 1.42E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene75614 | 0.862621 | 4.45E-64 | -1.69E-46 |
| MS.gene059894 | MS.gene75614 | 0.879418 | 1.27E-69 | -1.69E-46 |
| MS.gene059899 | MS.gene75614 | 0.864914 | 8.63E-65 | -1.69E-46 |
| MS.gene060084 | MS.gene75614 | 0.808294 | 3.32E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene75614 | 0.805581 | 1.25E-49 | -1.69E-46 |
| MS.gene060407 | MS.gene75614 | 0.804215 | 2.40E-49 | -1.69E-46 |
| MS.gene060476 | MS.gene75614 | 0.80564 | 1.21E-49 | -1.69E-46 |
| MS.gene060495 | MS.gene75614 | 0.87177 | 5.31E-67 | -1.69E-46 |
| MS.gene060940 | MS.gene75614 | 0.847812 | 9.12E-60 | -1.69E-46 |
| MS.gene060942 | MS.gene75614 | 0.836925 | 7.03E-57 | -1.69E-46 |
| MS.gene060943 | MS.gene75614 | 0.855815 | 4.90E-62 | -1.69E-46 |
| MS.gene061002 | MS.gene75614 | 0.870623 | 1.27E-66 | -1.69E-46 |
| MS.gene061049 | MS.gene75614 | 0.889021 | 3.51E-73 | -1.69E-46 |
| MS.gene061051 | MS.gene75614 | -0.827456 | 1.55E-54 | -1.69E-46 |
| MS.gene061112 | MS.gene75614 | 0.81759 | 3.05E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene75614 | -0.815786 | 7.73E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene75614 | 0.801719 | 7.89E-49 | -1.69E-46 |
| MS.gene061159 | MS.gene75614 | 0.864522 | 1.14E-64 | -1.69E-46 |
| MS.gene061265 | MS.gene75614 | 0.821119 | 4.78E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75614.t1 | MTR_3g085280 | 97.073 | 205 | 4 | 1 | 1 | 203 | 1 | 205 | 5.51e-149 | 412 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75614.t1 | AT1G27385 | 75.000 | 148 | 31 | 1 | 56 | 203 | 61 | 202 | 9.67e-77 | 229 |
| MS.gene75614.t1 | AT1G27385 | 74.324 | 148 | 32 | 1 | 56 | 203 | 61 | 202 | 7.27e-76 | 228 |
| MS.gene75614.t1 | AT1G27385 | 74.324 | 148 | 31 | 2 | 56 | 203 | 61 | 201 | 4.35e-74 | 222 |
| MS.gene75614.t1 | AT1G27385 | 74.324 | 148 | 31 | 2 | 56 | 203 | 61 | 201 | 2.31e-73 | 222 |
Find 60 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGACTGGCCCAATGTTTA+CGG | 0.293987 | 3.3:+71227448 | None:intergenic |
| GTTTGAATTGGAATTGGAAT+TGG | 0.295475 | 3.3:+71230228 | None:intergenic |
| GCTGTGTTGAAGGCCATTTC+AGG | 0.308532 | 3.3:-71230050 | MS.gene75614:intron |
| CGAAAACCTCCTCTCTTATT+CGG | 0.315627 | 3.3:+71230185 | None:intergenic |
| ATGGGTTGCTTTAGACAAAA+AGG | 0.324861 | 3.3:-71229866 | MS.gene75614:intron |
| GTAAAGGTTTGAATTGGAAT+TGG | 0.326338 | 3.3:+71230222 | None:intergenic |
| CAAACTACGAATATGGTTAT+TGG | 0.349962 | 3.3:-71229919 | MS.gene75614:CDS |
| TGAATACATACCCAACTGTT+AGG | 0.369842 | 3.3:-71229668 | MS.gene75614:CDS |
| GATAGGACAAACTACGAATA+TGG | 0.387015 | 3.3:-71229926 | MS.gene75614:CDS |
| TCCTCAAGAAGCTGTGTTGA+AGG | 0.392868 | 3.3:-71230060 | MS.gene75614:CDS |
| CCAAGTTGTTTCCAGCGAAC+AGG | 0.415316 | 3.3:-71227429 | MS.gene75614:intron |
| ATAAAACATACCTGGGGAAT+GGG | 0.419641 | 3.3:+71229567 | None:intergenic |
| CGTCCCTTTCACCGTGGTAA+TGG | 0.421777 | 3.3:-71230143 | MS.gene75614:CDS |
| GTGAAAGGGACGAGCCTTAA+CGG | 0.448927 | 3.3:+71230154 | None:intergenic |
| CCTGTTCGCTGGAAACAACT+TGG | 0.461413 | 3.3:+71227429 | None:intergenic |
| CGGATGATTCTACTAATGAA+TGG | 0.463843 | 3.3:-71229885 | MS.gene75614:CDS |
| GAAGATGGAATTACCTGAAA+TGG | 0.471281 | 3.3:+71230037 | None:intergenic |
| CATAAAACATACCTGGGGAA+TGG | 0.489276 | 3.3:+71229566 | None:intergenic |
| GAATACATACCCAACTGTTA+GGG | 0.490009 | 3.3:-71229667 | MS.gene75614:CDS |
| ATGCTATGAGGAGGGATGAC+AGG | 0.511597 | 3.3:-71227271 | MS.gene75614:CDS |
| AATATGTGTCCGTAAACATT+GGG | 0.511909 | 3.3:-71227457 | MS.gene75614:CDS |
| AAATATGTGTCCGTAAACAT+TGG | 0.512566 | 3.3:-71227458 | MS.gene75614:CDS |
| GGATGATTCTACTAATGAAT+GGG | 0.513339 | 3.3:-71229884 | MS.gene75614:CDS |
| AATTCCATTACCACGGTGAA+AGG | 0.519265 | 3.3:+71230139 | None:intergenic |
| GCTTCGTTCAGCCGTGATTG+TGG | 0.521555 | 3.3:-71230264 | MS.gene75614:CDS |
| GGGTTCACTGCAATAGGAAC+CGG | 0.532077 | 3.3:-71229645 | MS.gene75614:CDS |
| AGGCAGAAATACCTGTTCGC+TGG | 0.537747 | 3.3:+71227418 | None:intergenic |
| TCGCTGGAAACAACTTGGAC+TGG | 0.541126 | 3.3:+71227434 | None:intergenic |
| GCCTTCAACACAGCTTCTTG+AGG | 0.541456 | 3.3:+71230059 | None:intergenic |
| ATACCTGGGGAATGGGCTGT+TGG | 0.541945 | 3.3:+71229574 | None:intergenic |
| ATTCCATTACCACGGTGAAA+GGG | 0.551205 | 3.3:+71230140 | None:intergenic |
| TCATAGCATTATATACAGCT+TGG | 0.551996 | 3.3:+71227285 | None:intergenic |
| TTCACTGCAATAGGAACCGG+TGG | 0.562823 | 3.3:-71229642 | MS.gene75614:CDS |
| GGATGACTTCGTGCAAGCTA+TGG | 0.570776 | 3.3:-71229619 | MS.gene75614:CDS |
| TCTAAGACAGAAGGAAGGAT+AGG | 0.570938 | 3.3:-71229943 | MS.gene75614:CDS |
| TTGCAATGGTTCCACAATCA+CGG | 0.574427 | 3.3:+71230253 | None:intergenic |
| AATCCAACAGCCCATTCCCC+AGG | 0.580170 | 3.3:-71229577 | MS.gene75614:intron |
| ACTACGAATATGGTTATTGG+AGG | 0.589546 | 3.3:-71229916 | MS.gene75614:CDS |
| AATTGGAATTGGAATTGCAA+TGG | 0.596077 | 3.3:+71230239 | None:intergenic |
| TTCAACACAGCTTCTTGAGG+AGG | 0.596405 | 3.3:+71230062 | None:intergenic |
| TGAAGCACAAAGTATCAGCA+AGG | 0.602927 | 3.3:-71227484 | MS.gene75614:CDS |
| GCAGAGGTATCTAAGACAGA+AGG | 0.603237 | 3.3:-71229952 | MS.gene75614:intron |
| CTGTATATAATGCTATGAGG+AGG | 0.611383 | 3.3:-71227280 | MS.gene75614:CDS |
| TGTATATAATGCTATGAGGA+GGG | 0.612053 | 3.3:-71227279 | MS.gene75614:CDS |
| AATTTGAATCCGAATAAGAG+AGG | 0.614217 | 3.3:-71230194 | MS.gene75614:CDS |
| AAGCTGTATATAATGCTATG+AGG | 0.615037 | 3.3:-71227283 | MS.gene75614:CDS |
| TTGAATCCGAATAAGAGAGG+AGG | 0.625769 | 3.3:-71230191 | MS.gene75614:CDS |
| AGGTATCTAAGACAGAAGGA+AGG | 0.645582 | 3.3:-71229948 | MS.gene75614:CDS |
| GGTTATTGGAGGAACTGTCA+CGG | 0.650079 | 3.3:-71229905 | MS.gene75614:CDS |
| GAAGCACAAAGTATCAGCAA+GGG | 0.651333 | 3.3:-71227483 | MS.gene75614:CDS |
| AATACATACCCAACTGTTAG+GGG | 0.655407 | 3.3:-71229666 | MS.gene75614:CDS |
| TTGCACGAAGTCATCCCCAC+CGG | 0.656764 | 3.3:+71229626 | None:intergenic |
| CACTGCAATAGGAACCGGTG+GGG | 0.661994 | 3.3:-71229640 | MS.gene75614:CDS |
| AAGCACAAAGTATCAGCAAG+GGG | 0.665270 | 3.3:-71227482 | MS.gene75614:CDS |
| AACGGAGAATTCCATTACCA+CGG | 0.679173 | 3.3:+71230132 | None:intergenic |
| GTGTATCGTTACGAGAGCAA+CGG | 0.684249 | 3.3:+71230114 | None:intergenic |
| ATACATACCCAACTGTTAGG+GGG | 0.700615 | 3.3:-71229665 | MS.gene75614:CDS |
| TCACTGCAATAGGAACCGGT+GGG | 0.708899 | 3.3:-71229641 | MS.gene75614:CDS |
| AAGGCTCGTCCCTTTCACCG+TGG | 0.745511 | 3.3:-71230149 | MS.gene75614:CDS |
| TCATCGTGAAAAGACGACGA+TGG | 0.747007 | 3.3:+71230092 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTGAACA+AGG | - | chr3.3:71229392-71229411 | MS.gene75614:intron | 10.0% |
| !! | ACCAAATATTATTCTTATAA+AGG | - | chr3.3:71228190-71228209 | MS.gene75614:intron | 15.0% |
| !! | ACCTTTATAAGAATAATATT+TGG | + | chr3.3:71228194-71228213 | None:intergenic | 15.0% |
| !! | TAACAATTTAATACAATTCT+TGG | + | chr3.3:71228583-71228602 | None:intergenic | 15.0% |
| !! | AATTAAATCAAATGTGAAGA+TGG | + | chr3.3:71227515-71227534 | None:intergenic | 20.0% |
| !! | GGATTCAAATTAAAAAGTAA+AGG | + | chr3.3:71227331-71227350 | None:intergenic | 20.0% |
| !! | GTATAAAAAAAAAGTTGTTG+CGG | + | chr3.3:71228110-71228129 | None:intergenic | 20.0% |
| !! | TAAAAAGTAAAGGTTTGAAT+TGG | + | chr3.3:71227321-71227340 | None:intergenic | 20.0% |
| !! | TCAAAAGTTAGTATTTAGAA+GGG | - | chr3.3:71229471-71229490 | MS.gene75614:intron | 20.0% |
| !!! | AGCCTAAAATTTTCTTATTT+GGG | + | chr3.3:71229556-71229575 | None:intergenic | 20.0% |
| !!! | ATCTATCTGCTAAATATTTT+TGG | - | chr3.3:71228534-71228553 | MS.gene75614:intron | 20.0% |
| !!! | ATGAACAGTTTTCATTAATA+TGG | - | chr3.3:71229955-71229974 | MS.gene75614:intron | 20.0% |
| !!! | CTAAATATTTTTGGCTTATA+AGG | - | chr3.3:71228543-71228562 | MS.gene75614:intron | 20.0% |
| !!! | TAGCCTAAAATTTTCTTATT+TGG | + | chr3.3:71229557-71229576 | None:intergenic | 20.0% |
| !!! | TCAATACTTTTTCAGAAATT+TGG | - | chr3.3:71228019-71228038 | MS.gene75614:intron | 20.0% |
| !!! | TGAATTTTGTTGTATTTTTC+AGG | - | chr3.3:71230225-71230244 | MS.gene75614:CDS | 20.0% |
| ! | AAAAACAGAAAACATAGAAG+AGG | + | chr3.3:71230176-71230195 | None:intergenic | 25.0% |
| ! | AAGTTGCACCTATTTATTTA+GGG | - | chr3.3:71228050-71228069 | MS.gene75614:intron | 25.0% |
| ! | AATGTTAACATATTGCTTAC+AGG | - | chr3.3:71230021-71230040 | MS.gene75614:intron | 25.0% |
| ! | ATATTCGTATCCATATTCAA+GGG | - | chr3.3:71228884-71228903 | MS.gene75614:intron | 25.0% |
| ! | ATGATAATATGTAAACCTGA+CGG | + | chr3.3:71228634-71228653 | None:intergenic | 25.0% |
| ! | ATGTTAACATATTGCTTACA+GGG | - | chr3.3:71230022-71230041 | MS.gene75614:intron | 25.0% |
| ! | GAGCTTCAAATAAATGTTAA+TGG | - | chr3.3:71227557-71227576 | MS.gene75614:intron | 25.0% |
| ! | GATCATCATTAACAATAAGT+TGG | + | chr3.3:71229826-71229845 | None:intergenic | 25.0% |
| ! | GTCAAAAGTTAGTATTTAGA+AGG | - | chr3.3:71229470-71229489 | MS.gene75614:intron | 25.0% |
| ! | TAAAATTCATAACTTAGTCC+CGG | - | chr3.3:71229715-71229734 | MS.gene75614:intron | 25.0% |
| ! | TAAGTTGCACCTATTTATTT+AGG | - | chr3.3:71228049-71228068 | MS.gene75614:intron | 25.0% |
| ! | TAGACACAAAATTAACCTTA+CGG | + | chr3.3:71228238-71228257 | None:intergenic | 25.0% |
| ! | TATATTCGTATCCATATTCA+AGG | - | chr3.3:71228883-71228902 | MS.gene75614:intron | 25.0% |
| ! | TGAAGTCCTTGAAAATTATA+TGG | - | chr3.3:71229291-71229310 | MS.gene75614:intron | 25.0% |
| ! | TTGATACATAAAACATACCT+GGG | + | chr3.3:71227977-71227996 | None:intergenic | 25.0% |
| !! | GTCCCAAATAAGAAAATTTT+AGG | - | chr3.3:71229551-71229570 | MS.gene75614:intron | 25.0% |
| !!! | AATATTTTTGGCTTATAAGG+TGG | - | chr3.3:71228546-71228565 | MS.gene75614:intron | 25.0% |
| !!! | TATAATTTTCAAGGACTTCA+TGG | + | chr3.3:71229291-71229310 | None:intergenic | 25.0% |
| !!! | TATTTGTTGTTATTACCGTA+AGG | - | chr3.3:71228220-71228239 | MS.gene75614:intron | 25.0% |
| !!! | TCTTTTAAAAGGTCTAACTT+GGG | + | chr3.3:71229079-71229098 | None:intergenic | 25.0% |
| !!! | TTTTTCAGAAATTTGGACAT+TGG | - | chr3.3:71228026-71228045 | MS.gene75614:intron | 25.0% |
| !!! | TTTTTTTTTTGAACAAGGAG+AGG | - | chr3.3:71229397-71229416 | MS.gene75614:intron | 25.0% |
| AAACCATTTACAGCACATAT+TGG | + | chr3.3:71228823-71228842 | None:intergenic | 30.0% | |
| AAATATGTGTCCGTAAACAT+TGG | - | chr3.3:71230076-71230095 | MS.gene75614:CDS | 30.0% | |
| AAGCTGTATATAATGCTATG+AGG | - | chr3.3:71230251-71230270 | MS.gene75614:CDS | 30.0% | |
| AATATGTGTCCGTAAACATT+GGG | - | chr3.3:71230077-71230096 | MS.gene75614:CDS | 30.0% | |
| AATTGGAATTGGAATTGCAA+TGG | + | chr3.3:71227298-71227317 | None:intergenic | 30.0% | |
| AATTTGAATCCGAATAAGAG+AGG | - | chr3.3:71227340-71227359 | MS.gene75614:intron | 30.0% | |
| ACAATAAGGATATGTAGAGT+TGG | - | chr3.3:71229781-71229800 | MS.gene75614:intron | 30.0% | |
| AGGTTTACATATTATCATCG+AGG | - | chr3.3:71228636-71228655 | MS.gene75614:intron | 30.0% | |
| AGTTGCACCTATTTATTTAG+GGG | - | chr3.3:71228051-71228070 | MS.gene75614:intron | 30.0% | |
| ATAAATGTTAATGGTTGCAG+AGG | - | chr3.3:71227566-71227585 | MS.gene75614:intron | 30.0% | |
| ATCTTATATGCTGTGTAACT+TGG | - | chr3.3:71228269-71228288 | MS.gene75614:intron | 30.0% | |
| CAAACTACGAATATGGTTAT+TGG | - | chr3.3:71227615-71227634 | MS.gene75614:intron | 30.0% | |
| GGAAAAGAAAAAAACGAACA+AGG | + | chr3.3:71230139-71230158 | None:intergenic | 30.0% | |
| GGAAACTGAAATACCATTAA+AGG | + | chr3.3:71229581-71229600 | None:intergenic | 30.0% | |
| GGATGATTCTACTAATGAAT+GGG | - | chr3.3:71227650-71227669 | MS.gene75614:intron | 30.0% | |
| GTAAAGGTTTGAATTGGAAT+TGG | + | chr3.3:71227315-71227334 | None:intergenic | 30.0% | |
| GTTGATACATAAAACATACC+TGG | + | chr3.3:71227978-71227997 | None:intergenic | 30.0% | |
| GTTTGAATTGGAATTGGAAT+TGG | + | chr3.3:71227309-71227328 | None:intergenic | 30.0% | |
| TCATAGCATTATATACAGCT+TGG | + | chr3.3:71230252-71230271 | None:intergenic | 30.0% | |
| TCTACATATCCTTATTGTGT+TGG | + | chr3.3:71229779-71229798 | None:intergenic | 30.0% | |
| TGATACATAAAACATACCTG+GGG | + | chr3.3:71227976-71227995 | None:intergenic | 30.0% | |
| TGTATATAATGCTATGAGGA+GGG | - | chr3.3:71230255-71230274 | MS.gene75614:CDS | 30.0% | |
| TGTCCTTATAAAAAGACTAG+AGG | - | chr3.3:71228935-71228954 | MS.gene75614:intron | 30.0% | |
| TGTTAACATATTGCTTACAG+GGG | - | chr3.3:71230023-71230042 | MS.gene75614:intron | 30.0% | |
| TTTCATAAGAGACTTCTAGA+AGG | + | chr3.3:71228854-71228873 | None:intergenic | 30.0% | |
| ! | ACTAGTCTAAATGAGACAAT+GGG | - | chr3.3:71228703-71228722 | MS.gene75614:intron | 30.0% |
| ! | GAGAAGCCATATAATTTTCA+AGG | + | chr3.3:71229300-71229319 | None:intergenic | 30.0% |
| ! | TAAATTTTATCATCACCCAC+CGG | + | chr3.3:71229737-71229756 | None:intergenic | 30.0% |
| ! | TTCATAAGAGACTTCTAGAA+GGG | + | chr3.3:71228853-71228872 | None:intergenic | 30.0% |
| !! | CTTTTAAAAGGTCTAACTTG+GGG | + | chr3.3:71229078-71229097 | None:intergenic | 30.0% |
| !! | GTCTTTTAAAAGGTCTAACT+TGG | + | chr3.3:71229080-71229099 | None:intergenic | 30.0% |
| !! | TACTAACTTTTGACTGTTGT+TGG | + | chr3.3:71229464-71229483 | None:intergenic | 30.0% |
| !!! | AATTTTAGGCTAGCCTTTAA+TGG | - | chr3.3:71229565-71229584 | MS.gene75614:intron | 30.0% |
| !!! | TTTCTGTTTTTTCTGATCCT+GGG | - | chr3.3:71230185-71230204 | MS.gene75614:CDS | 30.0% |
| !!! | TTTTCTGTTTTTTCTGATCC+TGG | - | chr3.3:71230184-71230203 | MS.gene75614:CDS | 30.0% |
| AATACATACCCAACTGTTAG+GGG | - | chr3.3:71227868-71227887 | MS.gene75614:intron | 35.0% | |
| ACATCTTCACTTACATTTGG+TGG | - | chr3.3:71229979-71229998 | MS.gene75614:intron | 35.0% | |
| ACTACGAATATGGTTATTGG+AGG | - | chr3.3:71227618-71227637 | MS.gene75614:intron | 35.0% | |
| AGAAGAACACCAACACAATA+AGG | - | chr3.3:71229767-71229786 | MS.gene75614:intron | 35.0% | |
| ATAAAACATACCTGGGGAAT+GGG | + | chr3.3:71227970-71227989 | None:intergenic | 35.0% | |
| ATAATATGTAAACCTGACGG+TGG | + | chr3.3:71228631-71228650 | None:intergenic | 35.0% | |
| ATATCAATGTATATTCGCCC+AGG | + | chr3.3:71230205-71230224 | None:intergenic | 35.0% | |
| CCTTATAAAAAGACTAGAGG+AGG | - | chr3.3:71228938-71228957 | MS.gene75614:intron | 35.0% | |
| CGGATGATTCTACTAATGAA+TGG | - | chr3.3:71227649-71227668 | MS.gene75614:intron | 35.0% | |
| CTAGTCTAAATGAGACAATG+GGG | - | chr3.3:71228704-71228723 | MS.gene75614:intron | 35.0% | |
| CTGTATATAATGCTATGAGG+AGG | - | chr3.3:71230254-71230273 | MS.gene75614:CDS | 35.0% | |
| GAAGATGGAATTACCTGAAA+TGG | + | chr3.3:71227500-71227519 | None:intergenic | 35.0% | |
| GAATACATACCCAACTGTTA+GGG | - | chr3.3:71227867-71227886 | MS.gene75614:intron | 35.0% | |
| GATAGGACAAACTACGAATA+TGG | - | chr3.3:71227608-71227627 | MS.gene75614:intron | 35.0% | |
| GATCATAGGATTTCACACAA+TGG | - | chr3.3:71228769-71228788 | MS.gene75614:intron | 35.0% | |
| GGTACATCTTCACTTACATT+TGG | - | chr3.3:71229976-71229995 | MS.gene75614:intron | 35.0% | |
| TATAAAAAGACTAGAGGAGG+AGG | - | chr3.3:71228941-71228960 | MS.gene75614:intron | 35.0% | |
| TGAATACATACCCAACTGTT+AGG | - | chr3.3:71227866-71227885 | MS.gene75614:intron | 35.0% | |
| TTCAAGGACTTCATGGAATT+TGG | + | chr3.3:71229284-71229303 | None:intergenic | 35.0% | |
| TTGCCAATATGTGCTGTAAA+TGG | - | chr3.3:71228817-71228836 | MS.gene75614:intron | 35.0% | |
| ! | AAATTTTATCATCACCCACC+GGG | + | chr3.3:71229736-71229755 | None:intergenic | 35.0% |
| ! | ATGGGTTGCTTTAGACAAAA+AGG | - | chr3.3:71227668-71227687 | MS.gene75614:intron | 35.0% |
| ! | ATTGTGTTGGTGTTCTTCTA+CGG | + | chr3.3:71229766-71229785 | None:intergenic | 35.0% |
| ! | CACTAGTCTAAATGAGACAA+TGG | - | chr3.3:71228702-71228721 | MS.gene75614:intron | 35.0% |
| ! | CTTTTCCTATAACAACTCGA+AGG | + | chr3.3:71229922-71229941 | None:intergenic | 35.0% |
| ! | TCACTGTCTCGTCTTTTAAA+AGG | + | chr3.3:71229090-71229109 | None:intergenic | 35.0% |
| !! | CCTCCTCTAGTCTTTTTATA+AGG | + | chr3.3:71228941-71228960 | None:intergenic | 35.0% |
| !! | CTGTTGTGTGTTACTTACAT+AGG | - | chr3.3:71227843-71227862 | MS.gene75614:intron | 35.0% |
| !! | GATTTCCTTCGAGTTGTTAT+AGG | - | chr3.3:71229914-71229933 | MS.gene75614:CDS | 35.0% |
| AAAAGGTCTAACTTGGGGAT+GGG | + | chr3.3:71229073-71229092 | None:intergenic | 40.0% | |
| AACCATGAGTAGCTGCTTAA+AGG | + | chr3.3:71228799-71228818 | None:intergenic | 40.0% | |
| AACGGAGAATTCCATTACCA+CGG | + | chr3.3:71227405-71227424 | None:intergenic | 40.0% | |
| AAGGACTTCATGGAATTTGG+AGG | + | chr3.3:71229281-71229300 | None:intergenic | 40.0% | |
| AAGTGGAGAAGCAAAAGATG+AGG | + | chr3.3:71229192-71229211 | None:intergenic | 40.0% | |
| AATTCATAACTTAGTCCCGG+TGG | - | chr3.3:71229718-71229737 | MS.gene75614:intron | 40.0% | |
| AATTCCATTACCACGGTGAA+AGG | + | chr3.3:71227398-71227417 | None:intergenic | 40.0% | |
| ACGTATCGTAACAGTTGTCA+AGG | - | chr3.3:71229681-71229700 | MS.gene75614:intron | 40.0% | |
| ATACATACCCAACTGTTAGG+GGG | - | chr3.3:71227869-71227888 | MS.gene75614:intron | 40.0% | |
| ATGCAATCTTAGAACCACCA+CGG | + | chr3.3:71228502-71228521 | None:intergenic | 40.0% | |
| ATTCATAACTTAGTCCCGGT+GGG | - | chr3.3:71229719-71229738 | MS.gene75614:intron | 40.0% | |
| ATTCCATTACCACGGTGAAA+GGG | + | chr3.3:71227397-71227416 | None:intergenic | 40.0% | |
| ATTGACGTGATGCTTATTGC+TGG | - | chr3.3:71228304-71228323 | MS.gene75614:intron | 40.0% | |
| CATAAAACATACCTGGGGAA+TGG | + | chr3.3:71227971-71227990 | None:intergenic | 40.0% | |
| CGAAAACCTCCTCTCTTATT+CGG | + | chr3.3:71227352-71227371 | None:intergenic | 40.0% | |
| CGGTGCAAAATTCCAAACAT+GGG | + | chr3.3:71229615-71229634 | None:intergenic | 40.0% | |
| GAAGAGGATAACTTAGAGAG+AGG | + | chr3.3:71230160-71230179 | None:intergenic | 40.0% | |
| TAAAAGGTCTAACTTGGGGA+TGG | + | chr3.3:71229074-71229093 | None:intergenic | 40.0% | |
| TAATGGAAAGATCAGTCACC+CGG | + | chr3.3:71228977-71228996 | None:intergenic | 40.0% | |
| TATCGTAACAGTTGTCAAGG+TGG | - | chr3.3:71229684-71229703 | MS.gene75614:intron | 40.0% | |
| TCGGTGCAAAATTCCAAACA+TGG | + | chr3.3:71229616-71229635 | None:intergenic | 40.0% | |
| TGCACCTATTTATTTAGGGG+CGG | - | chr3.3:71228054-71228073 | MS.gene75614:intron | 40.0% | |
| TTATGAAGGACGCTGATCAT+AGG | - | chr3.3:71228755-71228774 | MS.gene75614:intron | 40.0% | |
| TTGAATCCGAATAAGAGAGG+AGG | - | chr3.3:71227343-71227362 | MS.gene75614:intron | 40.0% | |
| TTGCAATGGTTCCACAATCA+CGG | + | chr3.3:71227284-71227303 | None:intergenic | 40.0% | |
| TTTGCTGCATCCCTTGAATA+TGG | + | chr3.3:71228897-71228916 | None:intergenic | 40.0% | |
| ! | AAGCACAAAGTATCAGCAAG+GGG | - | chr3.3:71230052-71230071 | MS.gene75614:CDS | 40.0% |
| ! | AGGTATCTAAGACAGAAGGA+AGG | - | chr3.3:71227586-71227605 | MS.gene75614:intron | 40.0% |
| ! | GAAGCACAAAGTATCAGCAA+GGG | - | chr3.3:71230051-71230070 | MS.gene75614:CDS | 40.0% |
| ! | GCTTGACATAGTTTGTGGTT+TGG | + | chr3.3:71228609-71228628 | None:intergenic | 40.0% |
| ! | GGTAAAAAGCACATTCCTGT+TGG | + | chr3.3:71229643-71229662 | None:intergenic | 40.0% |
| ! | GTGTAGGTAGGAGTACATAA+TGG | + | chr3.3:71228994-71229013 | None:intergenic | 40.0% |
| ! | TCGTCTTTTCACGATGATCA+AGG | - | chr3.3:71227448-71227467 | MS.gene75614:CDS | 40.0% |
| ! | TCTAAGACAGAAGGAAGGAT+AGG | - | chr3.3:71227591-71227610 | MS.gene75614:intron | 40.0% |
| ! | TGAAGCACAAAGTATCAGCA+AGG | - | chr3.3:71230050-71230069 | MS.gene75614:intron | 40.0% |
| ! | TGACTTTAGAAGTCCAGTGT+AGG | - | chr3.3:71228448-71228467 | MS.gene75614:intron | 40.0% |
| !! | GAGACTTCTAGAAGGGATTT+TGG | + | chr3.3:71228846-71228865 | None:intergenic | 40.0% |
| !! | GTTTGGAATTTTGCACCGAA+TGG | - | chr3.3:71229617-71229636 | MS.gene75614:CDS | 40.0% |
| AAAGACTAGAGGAGGAGGTT+TGG | - | chr3.3:71228946-71228965 | MS.gene75614:intron | 45.0% | |
| AACCCCGCCCCTAAATAAAT+AGG | + | chr3.3:71228061-71228080 | None:intergenic | 45.0% | |
| AATGGAAAGATCAGTCACCC+GGG | + | chr3.3:71228976-71228995 | None:intergenic | 45.0% | |
| ATGCTCGTACACACATTGAG+AGG | - | chr3.3:71229360-71229379 | MS.gene75614:intron | 45.0% | |
| CAAACATGGGACTCAGTGAA+AGG | + | chr3.3:71229602-71229621 | None:intergenic | 45.0% | |
| CACCTATTTATTTAGGGGCG+GGG | - | chr3.3:71228056-71228075 | MS.gene75614:intron | 45.0% | |
| CTCAGGACCTTGCATTATGA+AGG | - | chr3.3:71228741-71228760 | MS.gene75614:intron | 45.0% | |
| CTTTCACTGAGTCCCATGTT+TGG | - | chr3.3:71229600-71229619 | MS.gene75614:CDS | 45.0% | |
| GACCTTTAAGCAGCTACTCA+TGG | - | chr3.3:71228794-71228813 | MS.gene75614:intron | 45.0% | |
| GATCAAATTGCAGCCTACAC+TGG | + | chr3.3:71228464-71228483 | None:intergenic | 45.0% | |
| GCACCTATTTATTTAGGGGC+GGG | - | chr3.3:71228055-71228074 | MS.gene75614:intron | 45.0% | |
| GGAGAAGGCTAAAGACTGTT+GGG | + | chr3.3:71229052-71229071 | None:intergenic | 45.0% | |
| GGTTATTGGAGGAACTGTCA+CGG | - | chr3.3:71227629-71227648 | MS.gene75614:intron | 45.0% | |
| GTGTATCGTTACGAGAGCAA+CGG | + | chr3.3:71227423-71227442 | None:intergenic | 45.0% | |
| TCAGCGTCCTTCATAATGCA+AGG | + | chr3.3:71228751-71228770 | None:intergenic | 45.0% | |
| TCATCGTGAAAAGACGACGA+TGG | + | chr3.3:71227445-71227464 | None:intergenic | 45.0% | |
| TCCTCAAGAAGCTGTGTTGA+AGG | - | chr3.3:71227474-71227493 | MS.gene75614:CDS | 45.0% | |
| TCGAAGGAAATCACAGTGCA+TGG | + | chr3.3:71229906-71229925 | None:intergenic | 45.0% | |
| TTCAACACAGCTTCTTGAGG+AGG | + | chr3.3:71227475-71227494 | None:intergenic | 45.0% | |
| TTCTCCACTTGCTCTCTAGA+TGG | - | chr3.3:71229202-71229221 | MS.gene75614:intron | 45.0% | |
| ! | TTTTCGCTGCAGAACCGTTA+AGG | - | chr3.3:71227366-71227385 | MS.gene75614:intron | 45.0% |
| !! | GCAGAGGTATCTAAGACAGA+AGG | - | chr3.3:71227582-71227601 | MS.gene75614:intron | 45.0% |
| !! | TTGGACTGGCCCAATGTTTA+CGG | + | chr3.3:71230089-71230108 | None:intergenic | 45.0% |
| AAAGACTGTTGGGAGAGTCC+AGG | + | chr3.3:71229042-71229061 | None:intergenic | 50.0% | |
| AACTATGTCAAGCCACCGTC+AGG | - | chr3.3:71228616-71228635 | MS.gene75614:intron | 50.0% | |
| AAGACTGTTGGGAGAGTCCA+GGG | + | chr3.3:71229041-71229060 | None:intergenic | 50.0% | |
| AGGCAGAAATACCTGTTCGC+TGG | + | chr3.3:71230119-71230138 | None:intergenic | 50.0% | |
| AGTGCATCCAACCTGATGTC+AGG | - | chr3.3:71229247-71229266 | MS.gene75614:intron | 50.0% | |
| ATGCTATGAGGAGGGATGAC+AGG | - | chr3.3:71230263-71230282 | MS.gene75614:CDS | 50.0% | |
| ATTTGGTTGCTGGTGCGTGT+AGG | + | chr3.3:71229010-71229029 | None:intergenic | 50.0% | |
| CACGCACCAGCAACCAAATT+CGG | - | chr3.3:71229011-71229030 | MS.gene75614:intron | 50.0% | |
| CAGTGAACCCCCTAACAGTT+GGG | + | chr3.3:71227879-71227898 | None:intergenic | 50.0% | |
| CCTGTTCGCTGGAAACAACT+TGG | + | chr3.3:71230108-71230127 | None:intergenic | 50.0% | |
| CGGTGGCTTGACATAGTTTG+TGG | + | chr3.3:71228614-71228633 | None:intergenic | 50.0% | |
| CGTACTCTTCTGCACAAAGC+AGG | + | chr3.3:71229664-71229683 | None:intergenic | 50.0% | |
| GAGGTTAGAATCAGCTCCAC+CGG | + | chr3.3:71229173-71229192 | None:intergenic | 50.0% | |
| GCACATTCCTGTTGGCCATT+CGG | + | chr3.3:71229635-71229654 | None:intergenic | 50.0% | |
| GCCTTCAACACAGCTTCTTG+AGG | + | chr3.3:71227478-71227497 | None:intergenic | 50.0% | |
| GCTGTGTTGAAGGCCATTTC+AGG | - | chr3.3:71227484-71227503 | MS.gene75614:CDS | 50.0% | |
| GGATGACTTCGTGCAAGCTA+TGG | - | chr3.3:71227915-71227934 | MS.gene75614:intron | 50.0% | |
| GGGAGAAGGCTAAAGACTGT+TGG | + | chr3.3:71229053-71229072 | None:intergenic | 50.0% | |
| GGGTTCACTGCAATAGGAAC+CGG | - | chr3.3:71227889-71227908 | MS.gene75614:intron | 50.0% | |
| GGTTCCATCTAGAGAGCAAG+TGG | + | chr3.3:71229209-71229228 | None:intergenic | 50.0% | |
| GTGAAAGGGACGAGCCTTAA+CGG | + | chr3.3:71227383-71227402 | None:intergenic | 50.0% | |
| GTTAGGGGGTTCACTGCAAT+AGG | - | chr3.3:71227883-71227902 | MS.gene75614:intron | 50.0% | |
| TCAAGGGATGCAGCAAAGTC+TGG | - | chr3.3:71228900-71228919 | MS.gene75614:intron | 50.0% | |
| TCACTGCAATAGGAACCGGT+GGG | - | chr3.3:71227893-71227912 | MS.gene75614:intron | 50.0% | |
| TCGCTGGAAACAACTTGGAC+TGG | + | chr3.3:71230103-71230122 | None:intergenic | 50.0% | |
| TCTAACTTGGGGATGGGAGA+AGG | + | chr3.3:71229067-71229086 | None:intergenic | 50.0% | |
| TGTGTACGAGCATGCGTAAG+CGG | + | chr3.3:71229353-71229372 | None:intergenic | 50.0% | |
| TTCACTGCAATAGGAACCGG+TGG | - | chr3.3:71227892-71227911 | MS.gene75614:intron | 50.0% | |
| ! | CATGGAATTTGGAGGCACAC+TGG | + | chr3.3:71229273-71229292 | None:intergenic | 50.0% |
| ! | CCAAGTTGTTTCCAGCGAAC+AGG | - | chr3.3:71230105-71230124 | MS.gene75614:CDS | 50.0% |
| ! | GGGACTAGTAATCACGACTC+AGG | - | chr3.3:71228724-71228743 | MS.gene75614:intron | 50.0% |
| ! | TTTTGCACCGAATGGCCAAC+AGG | - | chr3.3:71229625-71229644 | MS.gene75614:CDS | 50.0% |
| !! | TGACATCAGGTTGGATGCAC+TGG | + | chr3.3:71229248-71229267 | None:intergenic | 50.0% |
| AATCCAACAGCCCATTCCCC+AGG | - | chr3.3:71227957-71227976 | MS.gene75614:intron | 55.0% | |
| ACAGAACACTCCCGAGTCGT+CGG | - | chr3.3:71229127-71229146 | MS.gene75614:intron | 55.0% | |
| AGAGTCCATGTCCGTCTAGC+CGG | - | chr3.3:71229151-71229170 | MS.gene75614:intron | 55.0% | |
| ATGCGTAAGCGGGCATGTAC+AGG | + | chr3.3:71229342-71229361 | None:intergenic | 55.0% | |
| ATGGACTCTTCCGACGACTC+GGG | + | chr3.3:71229140-71229159 | None:intergenic | 55.0% | |
| CACTGCAATAGGAACCGGTG+GGG | - | chr3.3:71227894-71227913 | MS.gene75614:intron | 55.0% | |
| CATGGACTCTTCCGACGACT+CGG | + | chr3.3:71229141-71229160 | None:intergenic | 55.0% | |
| CGTCCCTTTCACCGTGGTAA+TGG | - | chr3.3:71227391-71227410 | MS.gene75614:intron | 55.0% | |
| GCAGTGAACCCCCTAACAGT+TGG | + | chr3.3:71227880-71227899 | None:intergenic | 55.0% | |
| GCTTCGTTCAGCCGTGATTG+TGG | - | chr3.3:71227270-71227289 | MS.gene75614:CDS | 55.0% | |
| GTGTACGAGCATGCGTAAGC+GGG | + | chr3.3:71229352-71229371 | None:intergenic | 55.0% | |
| TCTGCGTAGTTTAGCTGCCG+TGG | - | chr3.3:71228482-71228501 | MS.gene75614:intron | 55.0% | |
| TGGAACCTTCGTAGAGAGCC+TGG | - | chr3.3:71229222-71229241 | MS.gene75614:intron | 55.0% | |
| TTGCACGAAGTCATCCCCAC+CGG | + | chr3.3:71227911-71227930 | None:intergenic | 55.0% | |
| ! | AATCAGCTCCACCGGCTAGA+CGG | + | chr3.3:71229165-71229184 | None:intergenic | 55.0% |
| ! | ACACTGGCCTGACATCAGGT+TGG | + | chr3.3:71229257-71229276 | None:intergenic | 55.0% |
| !! | AGGAGGAGGTTTGGTTTGCC+CGG | - | chr3.3:71228955-71228974 | MS.gene75614:intron | 55.0% |
| !! | ATACCTGGGGAATGGGCTGT+TGG | + | chr3.3:71227963-71227982 | None:intergenic | 55.0% |
| AAGGCTCGTCCCTTTCACCG+TGG | - | chr3.3:71227385-71227404 | MS.gene75614:intron | 60.0% | |
| ACTGGCCAGGCTCTCTACGA+AGG | + | chr3.3:71229230-71229249 | None:intergenic | 60.0% | |
| ACTGTTGGGAGAGTCCAGGG+CGG | + | chr3.3:71229038-71229057 | None:intergenic | 60.0% | |
| AGTCCAGGGCGGTCCGAATT+TGG | + | chr3.3:71229027-71229046 | None:intergenic | 60.0% | |
| CAACCAAATTCGGACCGCCC+TGG | - | chr3.3:71229021-71229040 | MS.gene75614:intron | 60.0% | |
| GCGTAGTTTAGCTGCCGTGG+TGG | - | chr3.3:71228485-71228504 | MS.gene75614:intron | 60.0% | |
| GGCGGTCCGAATTTGGTTGC+TGG | + | chr3.3:71229020-71229039 | None:intergenic | 60.0% | |
| GGTTGCTGGTGCGTGTAGGT+AGG | + | chr3.3:71229006-71229025 | None:intergenic | 60.0% | |
| ! | AGGCACACTGGCCTGACATC+AGG | + | chr3.3:71229261-71229280 | None:intergenic | 60.0% |
| !! | GGAGGAGGTTTGGTTTGCCC+GGG | - | chr3.3:71228956-71228975 | MS.gene75614:intron | 60.0% |
| !! | TCAGGTTGGATGCACTGGCC+AGG | + | chr3.3:71229243-71229262 | None:intergenic | 60.0% |
| GTCCATGTCCGTCTAGCCGG+TGG | - | chr3.3:71229154-71229173 | MS.gene75614:intron | 65.0% | |
| ! | CTCCACCGGCTAGACGGACA+TGG | + | chr3.3:71229159-71229178 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 71227253 | 71230303 | 71227253 | ID=MS.gene75614 |
| chr3.3 | mRNA | 71227253 | 71230303 | 71227253 | ID=MS.gene75614.t1;Parent=MS.gene75614 |
| chr3.3 | exon | 71230051 | 71230303 | 71230051 | ID=MS.gene75614.t1.exon1;Parent=MS.gene75614.t1 |
| chr3.3 | CDS | 71230051 | 71230303 | 71230051 | ID=cds.MS.gene75614.t1;Parent=MS.gene75614.t1 |
| chr3.3 | exon | 71229867 | 71229970 | 71229867 | ID=MS.gene75614.t1.exon2;Parent=MS.gene75614.t1 |
| chr3.3 | CDS | 71229867 | 71229970 | 71229867 | ID=cds.MS.gene75614.t1;Parent=MS.gene75614.t1 |
| chr3.3 | exon | 71229578 | 71229691 | 71229578 | ID=MS.gene75614.t1.exon3;Parent=MS.gene75614.t1 |
| chr3.3 | CDS | 71229578 | 71229691 | 71229578 | ID=cds.MS.gene75614.t1;Parent=MS.gene75614.t1 |
| chr3.3 | exon | 71227430 | 71227513 | 71227430 | ID=MS.gene75614.t1.exon4;Parent=MS.gene75614.t1 |
| chr3.3 | CDS | 71227430 | 71227513 | 71227430 | ID=cds.MS.gene75614.t1;Parent=MS.gene75614.t1 |
| chr3.3 | exon | 71227253 | 71227309 | 71227253 | ID=MS.gene75614.t1.exon5;Parent=MS.gene75614.t1 |
| chr3.3 | CDS | 71227253 | 71227309 | 71227253 | ID=cds.MS.gene75614.t1;Parent=MS.gene75614.t1 |
| Gene Sequence |
| Protein sequence |
