Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66532.t1 | KEH17045.1 | 93.2 | 118 | 7 | 1 | 1 | 118 | 57 | 173 | 2.80E-54 | 221.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66532.t1 | Q9FLI7 | 74.4 | 82 | 19 | 1 | 37 | 118 | 28 | 107 | 1.1e-30 | 134.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66532.t1 | A0A072TU10 | 93.2 | 118 | 7 | 1 | 1 | 118 | 57 | 173 | 2.0e-54 | 221.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049491 | MS.gene66532 | 0.800596 | 1.34E-48 | -1.69E-46 |
| MS.gene049599 | MS.gene66532 | -0.814012 | 1.91E-51 | -1.69E-46 |
| MS.gene049661 | MS.gene66532 | 0.825394 | 4.80E-54 | -1.69E-46 |
| MS.gene049662 | MS.gene66532 | 0.831467 | 1.64E-55 | -1.69E-46 |
| MS.gene049758 | MS.gene66532 | 0.872558 | 2.90E-67 | -1.69E-46 |
| MS.gene050076 | MS.gene66532 | 0.826943 | 2.06E-54 | -1.69E-46 |
| MS.gene050128 | MS.gene66532 | 0.863534 | 2.33E-64 | -1.69E-46 |
| MS.gene050301 | MS.gene66532 | 0.82514 | 5.51E-54 | -1.69E-46 |
| MS.gene050397 | MS.gene66532 | 0.837821 | 4.15E-57 | -1.69E-46 |
| MS.gene050404 | MS.gene66532 | 0.852411 | 4.70E-61 | -1.69E-46 |
| MS.gene050406 | MS.gene66532 | 0.818659 | 1.75E-52 | -1.69E-46 |
| MS.gene050529 | MS.gene66532 | 0.836167 | 1.10E-56 | -1.69E-46 |
| MS.gene050767 | MS.gene66532 | 0.80497 | 1.67E-49 | -1.69E-46 |
| MS.gene050770 | MS.gene66532 | 0.808266 | 3.37E-50 | -1.69E-46 |
| MS.gene050971 | MS.gene66532 | 0.802229 | 6.19E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene66532 | 0.807764 | 4.31E-50 | -1.69E-46 |
| MS.gene051471 | MS.gene66532 | 0.836433 | 9.39E-57 | -1.69E-46 |
| MS.gene052077 | MS.gene66532 | 0.821756 | 3.41E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene66532 | 0.859597 | 3.71E-63 | -1.69E-46 |
| MS.gene052178 | MS.gene66532 | 0.862159 | 6.17E-64 | -1.69E-46 |
| MS.gene052188 | MS.gene66532 | 0.843644 | 1.23E-58 | -1.69E-46 |
| MS.gene052290 | MS.gene66532 | 0.848864 | 4.67E-60 | -1.69E-46 |
| MS.gene052310 | MS.gene66532 | 0.84972 | 2.70E-60 | -1.69E-46 |
| MS.gene052326 | MS.gene66532 | 0.81782 | 2.70E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene66532 | 0.839671 | 1.38E-57 | -1.69E-46 |
| MS.gene053073 | MS.gene66532 | 0.803791 | 2.94E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene66532 | 0.802426 | 5.64E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene66532 | 0.81637 | 5.73E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene66532 | 0.843532 | 1.32E-58 | -1.69E-46 |
| MS.gene053384 | MS.gene66532 | 0.800719 | 1.26E-48 | -1.69E-46 |
| MS.gene053557 | MS.gene66532 | 0.853575 | 2.18E-61 | -1.69E-46 |
| MS.gene053836 | MS.gene66532 | 0.824235 | 9.01E-54 | -1.69E-46 |
| MS.gene054123 | MS.gene66532 | 0.844199 | 8.76E-59 | -1.69E-46 |
| MS.gene054376 | MS.gene66532 | 0.806934 | 6.46E-50 | -1.69E-46 |
| MS.gene054955 | MS.gene66532 | 0.802725 | 4.90E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene66532 | 0.809564 | 1.78E-50 | -1.69E-46 |
| MS.gene055254 | MS.gene66532 | 0.853279 | 2.65E-61 | -1.69E-46 |
| MS.gene055277 | MS.gene66532 | 0.868547 | 6.02E-66 | -1.69E-46 |
| MS.gene055422 | MS.gene66532 | 0.840678 | 7.53E-58 | -1.69E-46 |
| MS.gene055428 | MS.gene66532 | 0.81456 | 1.45E-51 | -1.69E-46 |
| MS.gene055896 | MS.gene66532 | 0.805911 | 1.06E-49 | -1.69E-46 |
| MS.gene056314 | MS.gene66532 | 0.836077 | 1.16E-56 | -1.69E-46 |
| MS.gene056410 | MS.gene66532 | 0.804129 | 2.50E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene66532 | 0.88832 | 6.55E-73 | -1.69E-46 |
| MS.gene056612 | MS.gene66532 | 0.844614 | 6.78E-59 | -1.69E-46 |
| MS.gene056659 | MS.gene66532 | 0.802129 | 6.50E-49 | -1.69E-46 |
| MS.gene056719 | MS.gene66532 | 0.842093 | 3.19E-58 | -1.69E-46 |
| MS.gene056943 | MS.gene66532 | 0.819514 | 1.12E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene66532 | 0.832466 | 9.30E-56 | -1.69E-46 |
| MS.gene057295 | MS.gene66532 | 0.809219 | 2.11E-50 | -1.69E-46 |
| MS.gene057449 | MS.gene66532 | 0.801229 | 9.94E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene66532 | 0.808102 | 3.65E-50 | -1.69E-46 |
| MS.gene057794 | MS.gene66532 | 0.810777 | 9.74E-51 | -1.69E-46 |
| MS.gene057796 | MS.gene66532 | 0.843974 | 1.01E-58 | -1.69E-46 |
| MS.gene057927 | MS.gene66532 | 0.829415 | 5.21E-55 | -1.69E-46 |
| MS.gene058002 | MS.gene66532 | 0.8099 | 1.51E-50 | -1.69E-46 |
| MS.gene058082 | MS.gene66532 | 0.868 | 9.03E-66 | -1.69E-46 |
| MS.gene05811 | MS.gene66532 | 0.814572 | 1.44E-51 | -1.69E-46 |
| MS.gene058233 | MS.gene66532 | 0.803019 | 4.26E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene66532 | 0.801623 | 8.25E-49 | -1.69E-46 |
| MS.gene058365 | MS.gene66532 | 0.819108 | 1.38E-52 | -1.69E-46 |
| MS.gene058433 | MS.gene66532 | 0.812927 | 3.31E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene66532 | 0.836951 | 6.93E-57 | -1.69E-46 |
| MS.gene058845 | MS.gene66532 | 0.817122 | 3.88E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene66532 | 0.829357 | 5.39E-55 | -1.69E-46 |
| MS.gene05907 | MS.gene66532 | 0.821954 | 3.07E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene66532 | 0.804625 | 1.97E-49 | -1.69E-46 |
| MS.gene059294 | MS.gene66532 | 0.816085 | 6.63E-52 | -1.69E-46 |
| MS.gene059326 | MS.gene66532 | 0.804796 | 1.82E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene66532 | 0.819413 | 1.18E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene66532 | 0.838036 | 3.65E-57 | -1.69E-46 |
| MS.gene05959 | MS.gene66532 | 0.830102 | 3.55E-55 | -1.69E-46 |
| MS.gene059676 | MS.gene66532 | 0.82036 | 7.15E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene66532 | 0.815512 | 8.90E-52 | -1.69E-46 |
| MS.gene059692 | MS.gene66532 | 0.844712 | 6.38E-59 | -1.69E-46 |
| MS.gene059695 | MS.gene66532 | 0.832136 | 1.12E-55 | -1.69E-46 |
| MS.gene059708 | MS.gene66532 | 0.849239 | 3.67E-60 | -1.69E-46 |
| MS.gene05984 | MS.gene66532 | 0.815125 | 1.08E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene66532 | 0.887744 | 1.09E-72 | -1.69E-46 |
| MS.gene059899 | MS.gene66532 | 0.817636 | 2.98E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene66532 | 0.856332 | 3.46E-62 | -1.69E-46 |
| MS.gene060495 | MS.gene66532 | 0.824172 | 9.32E-54 | -1.69E-46 |
| MS.gene060496 | MS.gene66532 | 0.819501 | 1.12E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene66532 | 0.804996 | 1.65E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene66532 | 0.805761 | 1.14E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene66532 | 0.812224 | 4.72E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene66532 | 0.876132 | 1.78E-68 | -1.69E-46 |
| MS.gene061051 | MS.gene66532 | -0.8447 | 6.43E-59 | -1.69E-46 |
| MS.gene061112 | MS.gene66532 | 0.814088 | 1.84E-51 | -1.69E-46 |
| MS.gene061265 | MS.gene66532 | 0.81352 | 2.46E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66532.t1 | MTR_0050s0180 | 93.220 | 118 | 7 | 1 | 1 | 118 | 57 | 173 | 2.70e-75 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66532.t1 | AT5G51720 | 74.390 | 82 | 19 | 1 | 37 | 118 | 28 | 107 | 2.01e-41 | 133 |
Find 34 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCACTCTTCCTTATATC+TGG | 0.212325 | 6.2:+63183943 | None:intergenic |
| CTGAACCATACCTGCAATAA+GGG | 0.297458 | 6.2:+63183872 | None:intergenic |
| ACTGAACCATACCTGCAATA+AGG | 0.297703 | 6.2:+63183871 | None:intergenic |
| GAGAAAGAAAATGGAATTAT+AGG | 0.305770 | 6.2:-63184060 | MS.gene66532:CDS |
| CGTTTAGGTGAGAAAGAAAA+TGG | 0.318655 | 6.2:-63184069 | MS.gene66532:CDS |
| AAAGGAACCAGTGTTGAAAT+TGG | 0.358391 | 6.2:+63184035 | None:intergenic |
| AACACTGGTTCCTTTGGTAT+TGG | 0.361195 | 6.2:-63184027 | MS.gene66532:CDS |
| TCTCACCTAAACGTGGCTTT+TGG | 0.382823 | 6.2:+63184079 | None:intergenic |
| AATTTCAACACTGGTTCCTT+TGG | 0.387674 | 6.2:-63184033 | MS.gene66532:CDS |
| TGGCTTTGTTGTGCTTTACA+TGG | 0.398604 | 6.2:+63182535 | None:intergenic |
| TATAAGGAAGAGTGAAGAAA+AGG | 0.402584 | 6.2:-63183938 | MS.gene66532:CDS |
| AGGCTGTTACCCCTTATTGC+AGG | 0.413134 | 6.2:-63183882 | MS.gene66532:intron |
| GTAGCATAAATCCAGATATA+AGG | 0.421707 | 6.2:-63183954 | MS.gene66532:CDS |
| TGATACAGATGTTGGAGATC+AGG | 0.432376 | 6.2:-63182582 | MS.gene66532:intron |
| TTGTGCCAAAAGCCACGTTT+AGG | 0.443126 | 6.2:-63184084 | MS.gene66532:CDS |
| GGCACAAAACTACACCAACT+TGG | 0.466620 | 6.2:+63184100 | None:intergenic |
| GTGGTGGTGAAAGCAGAGAC+AGG | 0.472527 | 6.2:-63183985 | MS.gene66532:CDS |
| GCAATAAGGGGTAACAGCCT+TGG | 0.514083 | 6.2:+63183885 | None:intergenic |
| AAGCCACTGGAGATAATGTT+GGG | 0.514803 | 6.2:-63182518 | MS.gene66532:CDS |
| AAAGCCACTGGAGATAATGT+TGG | 0.533290 | 6.2:-63182519 | MS.gene66532:CDS |
| GAAAGCAAGGAGTGTGGTGG+TGG | 0.540229 | 6.2:-63184001 | MS.gene66532:CDS |
| TTGGTATTGGTAAGAAAGCA+AGG | 0.551760 | 6.2:-63184014 | MS.gene66532:CDS |
| ACATGGCTTCCATCACATAG+AGG | 0.557693 | 6.2:+63182552 | None:intergenic |
| ATAGGTACCAATTTCAACAC+TGG | 0.571557 | 6.2:-63184042 | MS.gene66532:CDS |
| GTAAAGCACAACAAAGCCAC+TGG | 0.579483 | 6.2:-63182531 | MS.gene66532:CDS |
| TGCTTTCTTACCAATACCAA+AGG | 0.582424 | 6.2:+63184017 | None:intergenic |
| TGTGCTCAGTGAAGTCTCCA+AGG | 0.596449 | 6.2:-63183902 | MS.gene66532:CDS |
| TGGTGGTGAAAGCAGAGACA+GGG | 0.597940 | 6.2:-63183984 | MS.gene66532:CDS |
| TGGTAAGAAAGCAAGGAGTG+TGG | 0.610053 | 6.2:-63184007 | MS.gene66532:CDS |
| AGGCCCAACATTATCTCCAG+TGG | 0.629442 | 6.2:+63182515 | None:intergenic |
| TGAACCATACCTGCAATAAG+GGG | 0.646965 | 6.2:+63183873 | None:intergenic |
| GGTGGTGAAAGCAGAGACAG+GGG | 0.666105 | 6.2:-63183983 | MS.gene66532:CDS |
| GTGGTGAAAGCAGAGACAGG+GGG | 0.706898 | 6.2:-63183982 | MS.gene66532:CDS |
| TAAGAAAGCAAGGAGTGTGG+TGG | 0.710692 | 6.2:-63184004 | MS.gene66532:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATTGAAATTTGATTAT+TGG | - | chr6.2:63182858-63182877 | MS.gene66532:intron | 10.0% |
| !! | TTGAGTAATTATAATAAAAA+GGG | + | chr6.2:63183855-63183874 | None:intergenic | 10.0% |
| !!! | TTATGTTTTTCATTTATTTA+TGG | - | chr6.2:63182769-63182788 | MS.gene66532:intron | 10.0% |
| !!! | TTGGAATTTTATTTTTATTA+GGG | - | chr6.2:63183658-63183677 | MS.gene66532:intron | 10.0% |
| !! | CTTGAGTAATTATAATAAAA+AGG | + | chr6.2:63183856-63183875 | None:intergenic | 15.0% |
| !!! | GTTGGAATTTTATTTTTATT+AGG | - | chr6.2:63183657-63183676 | MS.gene66532:intron | 15.0% |
| !! | AAAACAAATCTTAATCATTC+TGG | - | chr6.2:63183997-63184016 | MS.gene66532:CDS | 20.0% |
| !! | AAGGAAATTCTTACTATAAA+AGG | + | chr6.2:63183787-63183806 | None:intergenic | 20.0% |
| !! | ATTTAGTTGAAAACAACTTA+TGG | - | chr6.2:63182937-63182956 | MS.gene66532:intron | 20.0% |
| !! | TATCACAAATTAACAATGTT+TGG | - | chr6.2:63183266-63183285 | MS.gene66532:intron | 20.0% |
| !! | TATGCTTCTATAATATATGT+TGG | - | chr6.2:63183639-63183658 | MS.gene66532:intron | 20.0% |
| !!! | AGAATGATTAAGATTTGTTT+TGG | + | chr6.2:63183998-63184017 | None:intergenic | 20.0% |
| !!! | TGATTATTGGTTAATTTATG+TGG | - | chr6.2:63182871-63182890 | MS.gene66532:intron | 20.0% |
| ! | AAGAATTTGGTACTTATTAG+TGG | - | chr6.2:63183601-63183620 | MS.gene66532:intron | 25.0% |
| ! | ACATAGACATGATTTATTTG+TGG | + | chr6.2:63183402-63183421 | None:intergenic | 25.0% |
| ! | CTAAATTCCATAAACTATCT+AGG | + | chr6.2:63182923-63182942 | None:intergenic | 25.0% |
| ! | GAGAAAGAAAATGGAATTAT+AGG | - | chr6.2:63182554-63182573 | MS.gene66532:CDS | 25.0% |
| ! | TAAGTACCAAATTCTTTATG+TGG | + | chr6.2:63183597-63183616 | None:intergenic | 25.0% |
| ! | TAGATTCCACATAAAGAATT+TGG | - | chr6.2:63183588-63183607 | MS.gene66532:intron | 25.0% |
| ! | TGATATTAGATGAATGATTC+TGG | - | chr6.2:63183113-63183132 | MS.gene66532:intron | 25.0% |
| !! | ATGATAATCTGGAATAATGT+TGG | - | chr6.2:63183320-63183339 | MS.gene66532:intron | 25.0% |
| !! | GCATTTTGTATATGATAATC+TGG | - | chr6.2:63183309-63183328 | MS.gene66532:intron | 25.0% |
| !! | TGATAATCTGGAATAATGTT+GGG | - | chr6.2:63183321-63183340 | MS.gene66532:intron | 25.0% |
| !!! | AATCTTAATCATTCTGGTTT+TGG | - | chr6.2:63184003-63184022 | MS.gene66532:CDS | 25.0% |
| !!! | ATCTTAATCATTCTGGTTTT+GGG | - | chr6.2:63184004-63184023 | MS.gene66532:CDS | 25.0% |
| AAGCTATCCTAGATAGTTTA+TGG | - | chr6.2:63182913-63182932 | MS.gene66532:intron | 30.0% | |
| ACTGGTTAAGGATACTAAAA+AGG | - | chr6.2:63183706-63183725 | MS.gene66532:intron | 30.0% | |
| ACTTCAAAACATGAAGAACA+AGG | + | chr6.2:63183882-63183901 | None:intergenic | 30.0% | |
| CTGGTTAAGGATACTAAAAA+GGG | - | chr6.2:63183707-63183726 | MS.gene66532:intron | 30.0% | |
| GTAGCATAAATCCAGATATA+AGG | - | chr6.2:63182660-63182679 | MS.gene66532:intron | 30.0% | |
| TATAAGGAAGAGTGAAGAAA+AGG | - | chr6.2:63182676-63182695 | MS.gene66532:intron | 30.0% | |
| TATGGTTAAGTGTATCATTG+TGG | - | chr6.2:63182787-63182806 | MS.gene66532:intron | 30.0% | |
| TGAGAAATTACGATGTTGAT+AGG | - | chr6.2:63183374-63183393 | MS.gene66532:intron | 30.0% | |
| TGATTGATTACATCTGTTTC+TGG | - | chr6.2:63183192-63183211 | MS.gene66532:intron | 30.0% | |
| TTTATTAGGGAAATGCTAAC+CGG | - | chr6.2:63183671-63183690 | MS.gene66532:intron | 30.0% | |
| ! | GATAATCTGGAATAATGTTG+GGG | - | chr6.2:63183322-63183341 | MS.gene66532:intron | 30.0% |
| !! | AATTCGGCAAAGTTTTATGT+TGG | + | chr6.2:63183500-63183519 | None:intergenic | 30.0% |
| !!! | CCTTTTTTTGTATGCTTAAC+CGG | - | chr6.2:63183803-63183822 | MS.gene66532:intron | 30.0% |
| ATAAAAAGGGTCATGCTAAC+CGG | + | chr6.2:63183842-63183861 | None:intergenic | 35.0% | |
| ATAGGTACCAATTTCAACAC+TGG | - | chr6.2:63182572-63182591 | MS.gene66532:CDS | 35.0% | |
| CCGGTTAAGCATACAAAAAA+AGG | + | chr6.2:63183806-63183825 | None:intergenic | 35.0% | |
| CGTTTAGGTGAGAAAGAAAA+TGG | - | chr6.2:63182545-63182564 | MS.gene66532:CDS | 35.0% | |
| CTCTCAAATAGTTTCACAAG+TGG | - | chr6.2:63182986-63183005 | MS.gene66532:intron | 35.0% | |
| TCTTCACTCTTCCTTATATC+TGG | + | chr6.2:63182674-63182693 | None:intergenic | 35.0% | |
| TGCTTTCTTACCAATACCAA+AGG | + | chr6.2:63182600-63182619 | None:intergenic | 35.0% | |
| TGGTCCATGTCATAGAAATT+CGG | + | chr6.2:63183516-63183535 | None:intergenic | 35.0% | |
| TTTGCCGAATTTCTATGACA+TGG | - | chr6.2:63183509-63183528 | MS.gene66532:intron | 35.0% | |
| ! | AAAGGAACCAGTGTTGAAAT+TGG | + | chr6.2:63182582-63182601 | None:intergenic | 35.0% |
| ! | AGAGGCTTGATTGTTATTGT+TGG | - | chr6.2:63183565-63183584 | MS.gene66532:intron | 35.0% |
| ! | TTTTCTTTCTCACCTAAACG+TGG | + | chr6.2:63182545-63182564 | None:intergenic | 35.0% |
| !! | AATTTCAACACTGGTTCCTT+TGG | - | chr6.2:63182581-63182600 | MS.gene66532:intron | 35.0% |
| !! | GAATGATTCTGGTTTCTTTC+AGG | - | chr6.2:63183124-63183143 | MS.gene66532:intron | 35.0% |
| !! | TTAGCCTTGTTATACATTGC+CGG | - | chr6.2:63183421-63183440 | MS.gene66532:intron | 35.0% |
| !! | TTGGTATTGGTAAGAAAGCA+AGG | - | chr6.2:63182600-63182619 | MS.gene66532:intron | 35.0% |
| AAAGCCACTGGAGATAATGT+TGG | - | chr6.2:63184095-63184114 | MS.gene66532:CDS | 40.0% | |
| AAGCCACTGGAGATAATGTT+GGG | - | chr6.2:63184096-63184115 | MS.gene66532:CDS | 40.0% | |
| ACTGAACCATACCTGCAATA+AGG | + | chr6.2:63182746-63182765 | None:intergenic | 40.0% | |
| CAAACCCAAGTAAAAGGAGA+GGG | - | chr6.2:63183447-63183466 | MS.gene66532:intron | 40.0% | |
| CTGAACCATACCTGCAATAA+GGG | + | chr6.2:63182745-63182764 | None:intergenic | 40.0% | |
| TCAAACCCAAGTAAAAGGAG+AGG | - | chr6.2:63183446-63183465 | MS.gene66532:intron | 40.0% | |
| TGAACCATACCTGCAATAAG+GGG | + | chr6.2:63182744-63182763 | None:intergenic | 40.0% | |
| TGATACAGATGTTGGAGATC+AGG | - | chr6.2:63184032-63184051 | MS.gene66532:CDS | 40.0% | |
| ! | ACAACCCTCTCCTTTTACTT+GGG | + | chr6.2:63183454-63183473 | None:intergenic | 40.0% |
| ! | GGAACTTTTCCTCTATGTGA+TGG | - | chr6.2:63184053-63184072 | MS.gene66532:CDS | 40.0% |
| !! | AACACTGGTTCCTTTGGTAT+TGG | - | chr6.2:63182587-63182606 | MS.gene66532:intron | 40.0% |
| !! | CTTTTACTTGGGTTTGAGAC+CGG | + | chr6.2:63183443-63183462 | None:intergenic | 40.0% |
| !! | GCATCTGTTTTAAGCCAAGT+TGG | - | chr6.2:63182500-63182519 | MS.gene66532:CDS | 40.0% |
| !! | GCTAGCGTTGATGTCATTTA+TGG | - | chr6.2:63183043-63183062 | MS.gene66532:intron | 40.0% |
| !! | TGGCTTTGTTGTGCTTTACA+TGG | + | chr6.2:63184082-63184101 | None:intergenic | 40.0% |
| ACATGGCTTCCATCACATAG+AGG | + | chr6.2:63184065-63184084 | None:intergenic | 45.0% | |
| CGGTCTCAAACCCAAGTAAA+AGG | - | chr6.2:63183441-63183460 | MS.gene66532:intron | 45.0% | |
| GAGACCGGCAATGTATAACA+AGG | + | chr6.2:63183428-63183447 | None:intergenic | 45.0% | |
| GGCACAAAACTACACCAACT+TGG | + | chr6.2:63182517-63182536 | None:intergenic | 45.0% | |
| GGGTGCTTTGATACAGATGT+TGG | - | chr6.2:63184024-63184043 | MS.gene66532:CDS | 45.0% | |
| GTAAAAGGAGAGGGTTGTGT+TGG | - | chr6.2:63183456-63183475 | MS.gene66532:intron | 45.0% | |
| GTAAAGCACAACAAAGCCAC+TGG | - | chr6.2:63184083-63184102 | MS.gene66532:CDS | 45.0% | |
| GTTACCCCTTATTGCAGGTA+TGG | - | chr6.2:63182737-63182756 | MS.gene66532:intron | 45.0% | |
| TGGTAAGAAAGCAAGGAGTG+TGG | - | chr6.2:63182607-63182626 | MS.gene66532:intron | 45.0% | |
| TTGTGCCAAAAGCCACGTTT+AGG | - | chr6.2:63182530-63182549 | MS.gene66532:CDS | 45.0% | |
| ! | CACAACCCTCTCCTTTTACT+TGG | + | chr6.2:63183455-63183474 | None:intergenic | 45.0% |
| ! | TAAGAAAGCAAGGAGTGTGG+TGG | - | chr6.2:63182610-63182629 | MS.gene66532:intron | 45.0% |
| ! | TCTCACCTAAACGTGGCTTT+TGG | + | chr6.2:63182538-63182557 | None:intergenic | 45.0% |
| !! | AGGGTTGTGTTGGTTGTGTT+AGG | - | chr6.2:63183466-63183485 | MS.gene66532:intron | 45.0% |
| ACCCTGCTTAGTGGGATAAG+AGG | - | chr6.2:63183547-63183566 | MS.gene66532:intron | 50.0% | |
| AGCCTCTTATCCCACTAAGC+AGG | + | chr6.2:63183552-63183571 | None:intergenic | 50.0% | |
| AGGCCCAACATTATCTCCAG+TGG | + | chr6.2:63184102-63184121 | None:intergenic | 50.0% | |
| AGGCTGTTACCCCTTATTGC+AGG | - | chr6.2:63182732-63182751 | MS.gene66532:intron | 50.0% | |
| GCAATAAGGGGTAACAGCCT+TGG | + | chr6.2:63182732-63182751 | None:intergenic | 50.0% | |
| GCCTCTTATCCCACTAAGCA+GGG | + | chr6.2:63183551-63183570 | None:intergenic | 50.0% | |
| TATCCTTAACCAGTGCCCCA+GGG | + | chr6.2:63183700-63183719 | None:intergenic | 50.0% | |
| TGTGCTCAGTGAAGTCTCCA+AGG | - | chr6.2:63182712-63182731 | MS.gene66532:intron | 50.0% | |
| ! | TGGTGGTGAAAGCAGAGACA+GGG | - | chr6.2:63182630-63182649 | MS.gene66532:intron | 50.0% |
| AAATGCTAACCGGTGCCCCT+GGG | - | chr6.2:63183681-63183700 | MS.gene66532:intron | 55.0% | |
| AAGCAGGGTCAGCTCGTATG+TGG | + | chr6.2:63183536-63183555 | None:intergenic | 55.0% | |
| ACGAGCTGACCCTGCTTAGT+GGG | - | chr6.2:63183539-63183558 | MS.gene66532:intron | 55.0% | |
| ATCCTTAACCAGTGCCCCAG+GGG | + | chr6.2:63183699-63183718 | None:intergenic | 55.0% | |
| GGTGGTGAAAGCAGAGACAG+GGG | - | chr6.2:63182631-63182650 | MS.gene66532:intron | 55.0% | |
| GTATCCTTAACCAGTGCCCC+AGG | + | chr6.2:63183701-63183720 | None:intergenic | 55.0% | |
| GTGGTGAAAGCAGAGACAGG+GGG | - | chr6.2:63182632-63182651 | MS.gene66532:intron | 55.0% | |
| TACGAGCTGACCCTGCTTAG+TGG | - | chr6.2:63183538-63183557 | MS.gene66532:intron | 55.0% | |
| TGTATGCTTAACCGGTGCCC+CGG | - | chr6.2:63183811-63183830 | MS.gene66532:intron | 55.0% | |
| ! | GAAAGCAAGGAGTGTGGTGG+TGG | - | chr6.2:63182613-63182632 | MS.gene66532:intron | 55.0% |
| ! | GTGGTGGTGAAAGCAGAGAC+AGG | - | chr6.2:63182629-63182648 | MS.gene66532:intron | 55.0% |
| AATGCTAACCGGTGCCCCTG+GGG | - | chr6.2:63183682-63183701 | MS.gene66532:intron | 60.0% | |
| GAAATGCTAACCGGTGCCCC+TGG | - | chr6.2:63183680-63183699 | MS.gene66532:intron | 60.0% | |
| GTATGCTTAACCGGTGCCCC+GGG | - | chr6.2:63183812-63183831 | MS.gene66532:intron | 60.0% | |
| GTCATGCTAACCGGTGTCCC+CGG | + | chr6.2:63183833-63183852 | None:intergenic | 60.0% | |
| TATGCTTAACCGGTGCCCCG+GGG | - | chr6.2:63183813-63183832 | MS.gene66532:intron | 60.0% | |
| TCATGCTAACCGGTGTCCCC+GGG | + | chr6.2:63183832-63183851 | None:intergenic | 60.0% | |
| CATGCTAACCGGTGTCCCCG+GGG | + | chr6.2:63183831-63183850 | None:intergenic | 65.0% | |
| !! | TGCCCCTGGGGCACTGGTTA+AGG | - | chr6.2:63183694-63183713 | MS.gene66532:intron | 65.0% |
| ! | AACCAGTGCCCCAGGGGCAC+CGG | + | chr6.2:63183693-63183712 | None:intergenic | 70.0% |
| AACCGGTGCCCCGGGGACAC+CGG | - | chr6.2:63183820-63183839 | MS.gene66532:intron | 75.0% | |
| AACCGGTGCCCCTGGGGCAC+TGG | - | chr6.2:63183688-63183707 | MS.gene66532:intron | 75.0% | |
| AACCGGTGTCCCCGGGGCAC+CGG | + | chr6.2:63183825-63183844 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 63182497 | 63184139 | 63182497 | ID=MS.gene66532 |
| chr6.2 | mRNA | 63182497 | 63184139 | 63182497 | ID=MS.gene66532.t1;Parent=MS.gene66532 |
| chr6.2 | exon | 63183883 | 63184139 | 63183883 | ID=MS.gene66532.t1.exon1;Parent=MS.gene66532.t1 |
| chr6.2 | CDS | 63183883 | 63184139 | 63183883 | ID=cds.MS.gene66532.t1;Parent=MS.gene66532.t1 |
| chr6.2 | exon | 63182497 | 63182596 | 63182497 | ID=MS.gene66532.t1.exon2;Parent=MS.gene66532.t1 |
| chr6.2 | CDS | 63182497 | 63182596 | 63182497 | ID=cds.MS.gene66532.t1;Parent=MS.gene66532.t1 |
| Gene Sequence |
| Protein sequence |
