Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07407.t1 | XP_013468748.1 | 98.2 | 112 | 2 | 0 | 1 | 112 | 1 | 112 | 7.80E-57 | 229.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07407.t1 | O65686 | 65.9 | 82 | 28 | 0 | 1 | 82 | 1 | 82 | 1.9e-27 | 123.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07407.t1 | B3IWG1 | 98.2 | 112 | 2 | 0 | 1 | 112 | 1 | 112 | 5.6e-57 | 229.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049284 | MS.gene07407 | 0.821237 | 4.49E-53 | -1.69E-46 |
| MS.gene049351 | MS.gene07407 | 0.801755 | 7.75E-49 | -1.69E-46 |
| MS.gene049389 | MS.gene07407 | 0.816818 | 4.54E-52 | -1.69E-46 |
| MS.gene049491 | MS.gene07407 | 0.835314 | 1.80E-56 | -1.69E-46 |
| MS.gene049599 | MS.gene07407 | -0.868864 | 4.76E-66 | -1.69E-46 |
| MS.gene049661 | MS.gene07407 | 0.825238 | 5.23E-54 | -1.69E-46 |
| MS.gene049662 | MS.gene07407 | 0.834824 | 2.40E-56 | -1.69E-46 |
| MS.gene049758 | MS.gene07407 | 0.93208 | 1.46E-94 | -1.69E-46 |
| MS.gene049910 | MS.gene07407 | 0.815462 | 9.13E-52 | -1.69E-46 |
| MS.gene049915 | MS.gene07407 | 0.811957 | 5.40E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene07407 | 0.861681 | 8.65E-64 | -1.69E-46 |
| MS.gene050099 | MS.gene07407 | 0.820661 | 6.10E-53 | -1.69E-46 |
| MS.gene050128 | MS.gene07407 | 0.870255 | 1.68E-66 | -1.69E-46 |
| MS.gene050301 | MS.gene07407 | 0.889519 | 2.25E-73 | -1.69E-46 |
| MS.gene050397 | MS.gene07407 | 0.84817 | 7.27E-60 | -1.69E-46 |
| MS.gene050404 | MS.gene07407 | 0.84399 | 9.97E-59 | -1.69E-46 |
| MS.gene050406 | MS.gene07407 | 0.825373 | 4.86E-54 | -1.69E-46 |
| MS.gene050432 | MS.gene07407 | 0.820737 | 5.86E-53 | -1.69E-46 |
| MS.gene050464 | MS.gene07407 | 0.821853 | 3.24E-53 | -1.69E-46 |
| MS.gene050529 | MS.gene07407 | 0.851287 | 9.79E-61 | -1.69E-46 |
| MS.gene050558 | MS.gene07407 | 0.807802 | 4.23E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene07407 | -0.81199 | 5.31E-51 | -1.69E-46 |
| MS.gene050642 | MS.gene07407 | 0.817666 | 2.93E-52 | -1.69E-46 |
| MS.gene050763 | MS.gene07407 | 0.801083 | 1.06E-48 | -1.69E-46 |
| MS.gene050767 | MS.gene07407 | 0.809086 | 2.25E-50 | -1.69E-46 |
| MS.gene050770 | MS.gene07407 | 0.813111 | 3.02E-51 | -1.69E-46 |
| MS.gene05101 | MS.gene07407 | 0.870468 | 1.43E-66 | -1.69E-46 |
| MS.gene05119 | MS.gene07407 | -0.848502 | 5.88E-60 | -1.69E-46 |
| MS.gene051471 | MS.gene07407 | 0.902611 | 8.12E-79 | -1.69E-46 |
| MS.gene051662 | MS.gene07407 | 0.885005 | 1.18E-71 | -1.69E-46 |
| MS.gene051663 | MS.gene07407 | 0.871806 | 5.16E-67 | -1.69E-46 |
| MS.gene051860 | MS.gene07407 | 0.820603 | 6.29E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene07407 | 0.805988 | 1.02E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene07407 | 0.822888 | 1.86E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene07407 | 0.876134 | 1.78E-68 | -1.69E-46 |
| MS.gene052178 | MS.gene07407 | 0.883602 | 3.91E-71 | -1.69E-46 |
| MS.gene052188 | MS.gene07407 | 0.839557 | 1.48E-57 | -1.69E-46 |
| MS.gene052207 | MS.gene07407 | 0.809204 | 2.12E-50 | -1.69E-46 |
| MS.gene052290 | MS.gene07407 | 0.841477 | 4.64E-58 | -1.69E-46 |
| MS.gene052293 | MS.gene07407 | 0.800221 | 1.60E-48 | -1.69E-46 |
| MS.gene052309 | MS.gene07407 | -0.808825 | 2.56E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene07407 | 0.855994 | 4.34E-62 | -1.69E-46 |
| MS.gene052326 | MS.gene07407 | 0.877389 | 6.53E-69 | -1.69E-46 |
| MS.gene052340 | MS.gene07407 | 0.844341 | 8.03E-59 | -1.69E-46 |
| MS.gene053073 | MS.gene07407 | 0.836824 | 7.46E-57 | -1.69E-46 |
| MS.gene05316 | MS.gene07407 | 0.804956 | 1.68E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene07407 | 0.808576 | 2.89E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene07407 | 0.828806 | 7.33E-55 | -1.69E-46 |
| MS.gene053557 | MS.gene07407 | 0.866308 | 3.13E-65 | -1.69E-46 |
| MS.gene053559 | MS.gene07407 | 0.849746 | 2.65E-60 | -1.69E-46 |
| MS.gene053836 | MS.gene07407 | 0.908374 | 1.83E-81 | -1.69E-46 |
| MS.gene053907 | MS.gene07407 | 0.855295 | 6.95E-62 | -1.69E-46 |
| MS.gene054123 | MS.gene07407 | 0.856278 | 3.58E-62 | -1.69E-46 |
| MS.gene054376 | MS.gene07407 | 0.829471 | 5.05E-55 | -1.69E-46 |
| MS.gene054473 | MS.gene07407 | 0.810036 | 1.41E-50 | -1.69E-46 |
| MS.gene054542 | MS.gene07407 | 0.81027 | 1.25E-50 | -1.69E-46 |
| MS.gene05455 | MS.gene07407 | 0.821027 | 5.02E-53 | -1.69E-46 |
| MS.gene054667 | MS.gene07407 | 0.812866 | 3.42E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene07407 | 0.848385 | 6.34E-60 | -1.69E-46 |
| MS.gene054942 | MS.gene07407 | 0.802147 | 6.44E-49 | -1.69E-46 |
| MS.gene054983 | MS.gene07407 | 0.812151 | 4.90E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene07407 | 0.817681 | 2.91E-52 | -1.69E-46 |
| MS.gene055133 | MS.gene07407 | 0.817557 | 3.10E-52 | -1.69E-46 |
| MS.gene055254 | MS.gene07407 | 0.832089 | 1.15E-55 | -1.69E-46 |
| MS.gene055277 | MS.gene07407 | 0.901207 | 3.38E-78 | -1.69E-46 |
| MS.gene055390 | MS.gene07407 | 0.856203 | 3.77E-62 | -1.69E-46 |
| MS.gene055422 | MS.gene07407 | 0.917148 | 7.55E-86 | -1.69E-46 |
| MS.gene055428 | MS.gene07407 | 0.884264 | 2.22E-71 | -1.69E-46 |
| MS.gene055604 | MS.gene07407 | 0.812507 | 4.09E-51 | -1.69E-46 |
| MS.gene055712 | MS.gene07407 | 0.833565 | 4.96E-56 | -1.69E-46 |
| MS.gene055896 | MS.gene07407 | 0.846603 | 1.96E-59 | -1.69E-46 |
| MS.gene056069 | MS.gene07407 | -0.824464 | 7.96E-54 | -1.69E-46 |
| MS.gene056314 | MS.gene07407 | 0.8543 | 1.35E-61 | -1.69E-46 |
| MS.gene056407 | MS.gene07407 | 0.810423 | 1.16E-50 | -1.69E-46 |
| MS.gene056609 | MS.gene07407 | 0.839526 | 1.50E-57 | -1.69E-46 |
| MS.gene056612 | MS.gene07407 | 0.895384 | 1.01E-75 | -1.69E-46 |
| MS.gene056772 | MS.gene07407 | 0.804985 | 1.66E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene07407 | 0.808617 | 2.84E-50 | -1.69E-46 |
| MS.gene05702 | MS.gene07407 | 0.860913 | 1.48E-63 | -1.69E-46 |
| MS.gene057121 | MS.gene07407 | 0.837482 | 5.06E-57 | -1.69E-46 |
| MS.gene057123 | MS.gene07407 | 0.818414 | 1.99E-52 | -1.69E-46 |
| MS.gene057245 | MS.gene07407 | 0.845277 | 4.49E-59 | -1.69E-46 |
| MS.gene057260 | MS.gene07407 | 0.806792 | 6.93E-50 | -1.69E-46 |
| MS.gene057295 | MS.gene07407 | 0.806714 | 7.19E-50 | -1.69E-46 |
| MS.gene05733 | MS.gene07407 | 0.816572 | 5.16E-52 | -1.69E-46 |
| MS.gene057439 | MS.gene07407 | 0.878017 | 3.95E-69 | -1.69E-46 |
| MS.gene057448 | MS.gene07407 | 0.816319 | 5.88E-52 | -1.69E-46 |
| MS.gene057449 | MS.gene07407 | 0.810037 | 1.41E-50 | -1.69E-46 |
| MS.gene057450 | MS.gene07407 | 0.8313 | 1.80E-55 | -1.69E-46 |
| MS.gene057754 | MS.gene07407 | 0.809094 | 2.24E-50 | -1.69E-46 |
| MS.gene057794 | MS.gene07407 | 0.807234 | 5.58E-50 | -1.69E-46 |
| MS.gene057796 | MS.gene07407 | 0.8018 | 7.59E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene07407 | 0.853975 | 1.67E-61 | -1.69E-46 |
| MS.gene058082 | MS.gene07407 | 0.857403 | 1.67E-62 | -1.69E-46 |
| MS.gene05811 | MS.gene07407 | 0.84893 | 4.48E-60 | -1.69E-46 |
| MS.gene058142 | MS.gene07407 | 0.808925 | 2.44E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene07407 | 0.813399 | 2.61E-51 | -1.69E-46 |
| MS.gene058201 | MS.gene07407 | 0.825915 | 3.61E-54 | -1.69E-46 |
| MS.gene058233 | MS.gene07407 | 0.821576 | 3.75E-53 | -1.69E-46 |
| MS.gene058276 | MS.gene07407 | 0.81027 | 1.25E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene07407 | 0.819244 | 1.29E-52 | -1.69E-46 |
| MS.gene058365 | MS.gene07407 | 0.813578 | 2.38E-51 | -1.69E-46 |
| MS.gene058433 | MS.gene07407 | 0.827954 | 1.18E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene07407 | 0.871873 | 4.90E-67 | -1.69E-46 |
| MS.gene058661 | MS.gene07407 | -0.839584 | 1.45E-57 | -1.69E-46 |
| MS.gene058749 | MS.gene07407 | 0.821757 | 3.41E-53 | -1.69E-46 |
| MS.gene058845 | MS.gene07407 | 0.872453 | 3.14E-67 | -1.69E-46 |
| MS.gene059033 | MS.gene07407 | -0.836216 | 1.07E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene07407 | 0.854004 | 1.64E-61 | -1.69E-46 |
| MS.gene059228 | MS.gene07407 | 0.857577 | 1.48E-62 | -1.69E-46 |
| MS.gene059285 | MS.gene07407 | 0.810565 | 1.08E-50 | -1.69E-46 |
| MS.gene059326 | MS.gene07407 | 0.853285 | 2.64E-61 | -1.69E-46 |
| MS.gene059342 | MS.gene07407 | 0.813863 | 2.06E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene07407 | 0.865202 | 7.01E-65 | -1.69E-46 |
| MS.gene059597 | MS.gene07407 | 0.873743 | 1.16E-67 | -1.69E-46 |
| MS.gene05959 | MS.gene07407 | 0.825782 | 3.89E-54 | -1.69E-46 |
| MS.gene059676 | MS.gene07407 | 0.829339 | 5.44E-55 | -1.69E-46 |
| MS.gene059688 | MS.gene07407 | 0.833825 | 4.27E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene07407 | 0.856021 | 4.26E-62 | -1.69E-46 |
| MS.gene059695 | MS.gene07407 | 0.850039 | 2.20E-60 | -1.69E-46 |
| MS.gene059708 | MS.gene07407 | 0.843939 | 1.03E-58 | -1.69E-46 |
| MS.gene05984 | MS.gene07407 | 0.868671 | 5.49E-66 | -1.69E-46 |
| MS.gene059894 | MS.gene07407 | 0.915233 | 7.51E-85 | -1.69E-46 |
| MS.gene059899 | MS.gene07407 | 0.869131 | 3.90E-66 | -1.69E-46 |
| MS.gene059963 | MS.gene07407 | 0.803987 | 2.68E-49 | -1.69E-46 |
| MS.gene060005 | MS.gene07407 | 0.813547 | 2.42E-51 | -1.69E-46 |
| MS.gene06037 | MS.gene07407 | 0.865865 | 4.33E-65 | -1.69E-46 |
| MS.gene060476 | MS.gene07407 | 0.862191 | 6.03E-64 | -1.69E-46 |
| MS.gene060495 | MS.gene07407 | 0.833714 | 4.55E-56 | -1.69E-46 |
| MS.gene06090 | MS.gene07407 | 0.803244 | 3.82E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene07407 | 0.904723 | 9.11E-80 | -1.69E-46 |
| MS.gene061051 | MS.gene07407 | -0.855201 | 7.39E-62 | -1.69E-46 |
| MS.gene061112 | MS.gene07407 | 0.841989 | 3.40E-58 | -1.69E-46 |
| MS.gene061113 | MS.gene07407 | 0.820067 | 8.34E-53 | -1.69E-46 |
| MS.gene061265 | MS.gene07407 | 0.839884 | 1.21E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07407.t1 | MTR_1g076310 | 98.214 | 112 | 2 | 0 | 1 | 112 | 1 | 112 | 1.06e-79 | 230 |
| MS.gene07407.t1 | MTR_2g039750 | 59.048 | 105 | 36 | 1 | 1 | 98 | 1 | 105 | 2.36e-39 | 128 |
| MS.gene07407.t1 | MTR_5g014070 | 58.095 | 105 | 37 | 1 | 1 | 98 | 1 | 105 | 3.80e-38 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07407.t1 | AT4G34620 | 65.854 | 82 | 28 | 0 | 1 | 82 | 1 | 82 | 4.62e-38 | 124 |
| MS.gene07407.t1 | AT5G56940 | 53.846 | 104 | 41 | 1 | 1 | 97 | 1 | 104 | 5.68e-38 | 125 |
Find 25 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACAACAACCCGGTAAAA+TGG | 0.190138 | 1.2:-64162920 | None:intergenic |
| TGGATGGCTGCTCTTCGTTC+GGG | 0.277399 | 1.2:-64164612 | None:intergenic |
| TTGGATGGCTGCTCTTCGTT+CGG | 0.292007 | 1.2:-64164613 | None:intergenic |
| ACCATCAACTTCTTTGTCAT+TGG | 0.341893 | 1.2:-64164632 | None:intergenic |
| GGTTACTACAATCCTATTGC+AGG | 0.364917 | 1.2:+64162986 | MS.gene07407:CDS |
| TCTTCGTTCGGGGTATCAAC+AGG | 0.369294 | 1.2:-64164601 | None:intergenic |
| ATTGATGTTGAACCTGCAAT+AGG | 0.387393 | 1.2:-64162998 | None:intergenic |
| TCCAATGACAAAGAAGTTGA+TGG | 0.440759 | 1.2:+64164631 | MS.gene07407:CDS |
| TTTAGGTATTGGCTTTCTGT+TGG | 0.451329 | 1.2:+64164493 | MS.gene07407:intron |
| TTACAACAACCCGGTAAAAT+GGG | 0.462639 | 1.2:-64162919 | None:intergenic |
| AAACGGAAAGGTGGACTGTC+TGG | 0.470726 | 1.2:+64164571 | MS.gene07407:CDS |
| TCAACTTCTTTGTCATTGGA+TGG | 0.482393 | 1.2:-64164628 | None:intergenic |
| AGGCAGGTTTACAAATGAAA+CGG | 0.502953 | 1.2:+64164554 | MS.gene07407:CDS |
| AGTATTCGATTAGCGAGACT+TGG | 0.516156 | 1.2:+64162884 | MS.gene07407:CDS |
| GGCAAGAACATCGAAGTTGT+TGG | 0.525645 | 1.2:+64162965 | MS.gene07407:CDS |
| AGACTCTCCACAGGTTCTGA+AGG | 0.549004 | 1.2:-64164523 | None:intergenic |
| TGCTCAACCTTCAGAACCTG+TGG | 0.580737 | 1.2:+64164516 | MS.gene07407:CDS |
| TTGAATAAAAGACTCTCCAC+AGG | 0.595461 | 1.2:-64164532 | None:intergenic |
| GGATGGCTGCTCTTCGTTCG+GGG | 0.597237 | 1.2:-64164611 | None:intergenic |
| CTTCGTTCGGGGTATCAACA+GGG | 0.597733 | 1.2:-64164600 | None:intergenic |
| AGATTCACATTCAAAAGTGA+AGG | 0.606410 | 1.2:-64164666 | None:intergenic |
| GATAGCAAATGTGCAAGAGA+CGG | 0.614709 | 1.2:+64162944 | MS.gene07407:CDS |
| TGCTATCAGTTACAACAACC+CGG | 0.633843 | 1.2:-64162928 | None:intergenic |
| TTACAAATGAAACGGAAAGG+TGG | 0.647965 | 1.2:+64164562 | MS.gene07407:CDS |
| GGTTTACAAATGAAACGGAA+AGG | 0.664042 | 1.2:+64164559 | MS.gene07407:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAATTTTTTTAAAATTA+CGG | + | chr1.2:64163784-64163803 | MS.gene07407:intron | 0.0% |
| !! | AAAATTTCAGAAAATTATTA+TGG | - | chr1.2:64163692-64163711 | None:intergenic | 10.0% |
| !!! | AAAATTGCATTTTTATTATT+TGG | + | chr1.2:64163082-64163101 | MS.gene07407:intron | 10.0% |
| !!! | TATATGCAATATTTTATTTT+TGG | - | chr1.2:64163537-64163556 | None:intergenic | 10.0% |
| !! | AAAGTAAATCAAGTTAAAAA+AGG | - | chr1.2:64164310-64164329 | None:intergenic | 15.0% |
| !!! | AAAGAATTTTTCTTTCATTT+GGG | + | chr1.2:64163113-64163132 | MS.gene07407:intron | 15.0% |
| !! | AACATATAGAATTAGAGATA+AGG | - | chr1.2:64163031-64163050 | None:intergenic | 20.0% |
| !! | AATCAAGTTAAAAAAGGATT+AGG | - | chr1.2:64164304-64164323 | None:intergenic | 20.0% |
| !! | CAAATGAAAGAAAAATTCTT+TGG | - | chr1.2:64163114-64163133 | None:intergenic | 20.0% |
| !! | TAATTGATATTTGCATATGT+AGG | + | chr1.2:64163370-64163389 | MS.gene07407:intron | 20.0% |
| !! | TATGAATATTGCATATAGAA+GGG | + | chr1.2:64163505-64163524 | MS.gene07407:intron | 20.0% |
| !! | TGTTTATAAATGATAAAACC+AGG | - | chr1.2:64164111-64164130 | None:intergenic | 20.0% |
| !! | TTATGAATATTGCATATAGA+AGG | + | chr1.2:64163504-64163523 | MS.gene07407:intron | 20.0% |
| !!! | AGTTATTTGTACACAATTTT+GGG | + | chr1.2:64164415-64164434 | MS.gene07407:intron | 20.0% |
| !!! | CAAAGAATTTTTCTTTCATT+TGG | + | chr1.2:64163112-64163131 | MS.gene07407:intron | 20.0% |
| !!! | CATTTTTAATCCTTTTACTA+TGG | - | chr1.2:64164191-64164210 | None:intergenic | 20.0% |
| !!! | GGTTTTATCATTTATAAACA+CGG | + | chr1.2:64164111-64164130 | MS.gene07407:intron | 20.0% |
| !!! | TAGTTATTTGTACACAATTT+TGG | + | chr1.2:64164414-64164433 | MS.gene07407:intron | 20.0% |
| !!! | TTAAAGCACAAAATTGTTTT+GGG | + | chr1.2:64163159-64163178 | MS.gene07407:intron | 20.0% |
| ! | AACGAACTGATGTATTTAAA+CGG | + | chr1.2:64163975-64163994 | MS.gene07407:intron | 25.0% |
| ! | AAGAGAGAGATAAAGATAAA+CGG | + | chr1.2:64163261-64163280 | MS.gene07407:intron | 25.0% |
| ! | AGCATACAATAATGTTCTAA+AGG | - | chr1.2:64163644-64163663 | None:intergenic | 25.0% |
| ! | ATGATTTACAATTACCTACA+TGG | + | chr1.2:64163818-64163837 | MS.gene07407:intron | 25.0% |
| ! | ATGTTCAAATAACATAACTC+GGG | + | chr1.2:64163303-64163322 | MS.gene07407:intron | 25.0% |
| ! | GAAAATTATTATGGCAAGTA+AGG | - | chr1.2:64163683-64163702 | None:intergenic | 25.0% |
| ! | GATGTTCAAATAACATAACT+CGG | + | chr1.2:64163302-64163321 | MS.gene07407:intron | 25.0% |
| ! | TTATCATTTATAAACACGGA+GGG | + | chr1.2:64164115-64164134 | MS.gene07407:intron | 25.0% |
| ! | TTGTATGCTTAATTTCACTT+TGG | + | chr1.2:64163655-64163674 | MS.gene07407:intron | 25.0% |
| ! | TTTATCATTTATAAACACGG+AGG | + | chr1.2:64164114-64164133 | MS.gene07407:intron | 25.0% |
| ! | TTTCATTTGGGTATACTTTA+TGG | + | chr1.2:64163125-64163144 | MS.gene07407:intron | 25.0% |
| !! | ATCCTTTTACTATGGAATTA+TGG | - | chr1.2:64164183-64164202 | None:intergenic | 25.0% |
| !! | CTTAAAGCACAAAATTGTTT+TGG | + | chr1.2:64163158-64163177 | MS.gene07407:intron | 25.0% |
| !! | GTTATTTGTACACAATTTTG+GGG | + | chr1.2:64164416-64164435 | MS.gene07407:intron | 25.0% |
| !! | TTCTACTTTGTAAAGTATCA+TGG | + | chr1.2:64164028-64164047 | MS.gene07407:intron | 25.0% |
| AAATGACCATAATGAAACAC+AGG | + | chr1.2:64163581-64163600 | MS.gene07407:intron | 30.0% | |
| AATTGCAATGTATACCAGTT+TGG | + | chr1.2:64164245-64164264 | MS.gene07407:intron | 30.0% | |
| ATTAAATGGCAGATTGACAT+AGG | - | chr1.2:64163771-64163790 | None:intergenic | 30.0% | |
| ATTGCAATGTATACCAGTTT+GGG | + | chr1.2:64164246-64164265 | MS.gene07407:intron | 30.0% | |
| CTTATCTGTTTGCATCTTAA+TGG | + | chr1.2:64163901-64163920 | MS.gene07407:intron | 30.0% | |
| GAGATAAAGATAAACGGATA+TGG | + | chr1.2:64163267-64163286 | MS.gene07407:intron | 30.0% | |
| GCAATTCACAGTAACAAATA+GGG | - | chr1.2:64164231-64164250 | None:intergenic | 30.0% | |
| GGAAATTAGTGATAATTGTG+GGG | + | chr1.2:64164437-64164456 | MS.gene07407:intron | 30.0% | |
| GGGAAATTAGTGATAATTGT+GGG | + | chr1.2:64164436-64164455 | MS.gene07407:intron | 30.0% | |
| TAATCAATAACCCAAACTGT+TGG | + | chr1.2:64164157-64164176 | MS.gene07407:intron | 30.0% | |
| TCAACTTGAAATGAAAACAC+CGG | - | chr1.2:64163733-64163752 | None:intergenic | 30.0% | |
| TGCAATTCACAGTAACAAAT+AGG | - | chr1.2:64164232-64164251 | None:intergenic | 30.0% | |
| TTACAATTACCTACATGGTA+TGG | + | chr1.2:64163823-64163842 | MS.gene07407:intron | 30.0% | |
| ! | ATATGTAGGACTTGTTTGAA+AGG | + | chr1.2:64163384-64163403 | MS.gene07407:intron | 30.0% |
| ! | CATTTTTGCTAATGAGTAGT+GGG | + | chr1.2:64163346-64163365 | MS.gene07407:intron | 30.0% |
| ! | GAATTTTCTGTGTTTACGAT+AGG | + | chr1.2:64163845-64163864 | MS.gene07407:intron | 30.0% |
| !! | GTTGTGAGTTTCTAGATTTT+GGG | + | chr1.2:64163420-64163439 | MS.gene07407:intron | 30.0% |
| !! | TGTTGTGAGTTTCTAGATTT+TGG | + | chr1.2:64163419-64163438 | MS.gene07407:intron | 30.0% |
| !!! | TTTTTTGTTCCTAGCTCTAA+GGG | - | chr1.2:64163479-64163498 | None:intergenic | 30.0% |
| AAACACCGGAAAAACTTACA+CGG | - | chr1.2:64163719-64163738 | None:intergenic | 35.0% | |
| ACCATAATGAAACACAGGTT+TGG | + | chr1.2:64163586-64163605 | MS.gene07407:intron | 35.0% | |
| ACCATCAACTTCTTTGTCAT+TGG | - | chr1.2:64164635-64164654 | None:intergenic | 35.0% | |
| AGGCAGGTTTACAAATGAAA+CGG | + | chr1.2:64164554-64164573 | MS.gene07407:CDS | 35.0% | |
| ATTGATGTTGAACCTGCAAT+AGG | - | chr1.2:64163001-64163020 | None:intergenic | 35.0% | |
| CAATACCTAAAGAACATGAG+GGG | - | chr1.2:64164484-64164503 | None:intergenic | 35.0% | |
| CAGAAAATTCCATACCATGT+AGG | - | chr1.2:64163835-64163854 | None:intergenic | 35.0% | |
| CATTTGGGTATACTTTATGG+TGG | + | chr1.2:64163128-64163147 | MS.gene07407:intron | 35.0% | |
| CCAATACCTAAAGAACATGA+GGG | - | chr1.2:64164485-64164504 | None:intergenic | 35.0% | |
| CTGATTTCTGTTCTCAGTAT+GGG | + | chr1.2:64163877-64163896 | MS.gene07407:intron | 35.0% | |
| GGCCATAATTCCATAGTAAA+AGG | + | chr1.2:64164178-64164197 | MS.gene07407:intron | 35.0% | |
| GGGGAAATTAGTGATAATTG+TGG | + | chr1.2:64164435-64164454 | MS.gene07407:intron | 35.0% | |
| GGTTTACAAATGAAACGGAA+AGG | + | chr1.2:64164559-64164578 | MS.gene07407:CDS | 35.0% | |
| TCAACTTCTTTGTCATTGGA+TGG | - | chr1.2:64164631-64164650 | None:intergenic | 35.0% | |
| TCCAAACCTGTGTTTCATTA+TGG | - | chr1.2:64163590-64163609 | None:intergenic | 35.0% | |
| TCCAATGACAAAGAAGTTGA+TGG | + | chr1.2:64164631-64164650 | MS.gene07407:CDS | 35.0% | |
| TTACAAATGAAACGGAAAGG+TGG | + | chr1.2:64164562-64164581 | MS.gene07407:CDS | 35.0% | |
| TTACAACAACCCGGTAAAAT+GGG | - | chr1.2:64162922-64162941 | None:intergenic | 35.0% | |
| TTGAATAAAAGACTCTCCAC+AGG | - | chr1.2:64164535-64164554 | None:intergenic | 35.0% | |
| ! | GCATTTTTGCTAATGAGTAG+TGG | + | chr1.2:64163345-64163364 | MS.gene07407:intron | 35.0% |
| ! | GGGATAAACACGTTTTCTTA+TGG | + | chr1.2:64163323-64163342 | MS.gene07407:intron | 35.0% |
| ! | TGTGGAGAGTCTTTTATTCA+AGG | + | chr1.2:64164534-64164553 | MS.gene07407:CDS | 35.0% |
| ! | TTGTTCCGTGTAAGTTTTTC+CGG | + | chr1.2:64163711-64163730 | MS.gene07407:intron | 35.0% |
| !! | TTTAGGTATTGGCTTTCTGT+TGG | + | chr1.2:64164493-64164512 | MS.gene07407:intron | 35.0% |
| !!! | GTTTTTTGTTCCTAGCTCTA+AGG | - | chr1.2:64163480-64163499 | None:intergenic | 35.0% |
| AGTATTCGATTAGCGAGACT+TGG | + | chr1.2:64162884-64162903 | MS.gene07407:CDS | 40.0% | |
| CCATACTGAGAACAGAAATC+AGG | - | chr1.2:64163879-64163898 | None:intergenic | 40.0% | |
| CCCTCATGTTCTTTAGGTAT+TGG | + | chr1.2:64164482-64164501 | MS.gene07407:intron | 40.0% | |
| CCTGATTTCTGTTCTCAGTA+TGG | + | chr1.2:64163876-64163895 | MS.gene07407:intron | 40.0% | |
| CGATCGTTATCTCTTGTTAG+TGG | + | chr1.2:64163614-64163633 | MS.gene07407:intron | 40.0% | |
| CTAGAAAGTGACCTGATAGA+GGG | + | chr1.2:64164084-64164103 | MS.gene07407:intron | 40.0% | |
| GATAGCAAATGTGCAAGAGA+CGG | + | chr1.2:64162944-64162963 | MS.gene07407:CDS | 40.0% | |
| GCCAATACCTAAAGAACATG+AGG | - | chr1.2:64164486-64164505 | None:intergenic | 40.0% | |
| GGAATTATGGCCAACAGTTT+GGG | - | chr1.2:64164170-64164189 | None:intergenic | 40.0% | |
| GGCAGATTGACATAGGTTAT+AGG | - | chr1.2:64163764-64163783 | None:intergenic | 40.0% | |
| GGTTACTACAATCCTATTGC+AGG | + | chr1.2:64162986-64163005 | MS.gene07407:CDS | 40.0% | |
| GTGATAATTGTGGGGATCAT+TGG | + | chr1.2:64164445-64164464 | MS.gene07407:intron | 40.0% | |
| GTTACAACAACCCGGTAAAA+TGG | - | chr1.2:64162923-64162942 | None:intergenic | 40.0% | |
| TAGAAAGTGACCTGATAGAG+GGG | + | chr1.2:64164085-64164104 | MS.gene07407:intron | 40.0% | |
| TGCTATCAGTTACAACAACC+CGG | - | chr1.2:64162931-64162950 | None:intergenic | 40.0% | |
| TGGAATTATGGCCAACAGTT+TGG | - | chr1.2:64164171-64164190 | None:intergenic | 40.0% | |
| TTTAGCTATCCCTTAGAGCT+AGG | + | chr1.2:64163467-64163486 | MS.gene07407:intron | 40.0% | |
| ! | GAGAGTCTTTTATTCAAGGC+AGG | + | chr1.2:64164538-64164557 | MS.gene07407:CDS | 40.0% |
| ! | TATACCAGTTTGGGATGAGA+AGG | + | chr1.2:64164255-64164274 | MS.gene07407:intron | 40.0% |
| !! | AAACGGATTGAAGTCACTTG+AGG | + | chr1.2:64163992-64164011 | MS.gene07407:intron | 40.0% |
| AACATGAGGGGAGGTTAAGA+TGG | - | chr1.2:64164472-64164491 | None:intergenic | 45.0% | |
| AACCTCCCCTCATGTTCTTT+AGG | + | chr1.2:64164476-64164495 | MS.gene07407:intron | 45.0% | |
| GCTAGAAAGTGACCTGATAG+AGG | + | chr1.2:64164083-64164102 | MS.gene07407:intron | 45.0% | |
| GGCAAGAACATCGAAGTTGT+TGG | + | chr1.2:64162965-64162984 | MS.gene07407:CDS | 45.0% | |
| TACCTAAAGAACATGAGGGG+AGG | - | chr1.2:64164481-64164500 | None:intergenic | 45.0% | |
| ! | CACACACAACCCATTTTACC+GGG | + | chr1.2:64162910-64162929 | MS.gene07407:CDS | 45.0% |
| ! | GCACACACAACCCATTTTAC+CGG | + | chr1.2:64162909-64162928 | MS.gene07407:CDS | 45.0% |
| !!! | GTAATTTTAAAAAAATTAAA+TGG | - | chr1.2:64163785-64163804 | None:intergenic | 5.0% |
| TAAAACCAGGCCCCTCTATC+AGG | - | chr1.2:64164098-64164117 | None:intergenic | 50.0% | |
| TGCTCAACCTTCAGAACCTG+TGG | + | chr1.2:64164516-64164535 | MS.gene07407:CDS | 50.0% | |
| TTGGATGGCTGCTCTTCGTT+CGG | - | chr1.2:64164616-64164635 | None:intergenic | 50.0% | |
| ! | ACCAGTTTGGGATGAGAAGG+AGG | + | chr1.2:64164258-64164277 | MS.gene07407:intron | 50.0% |
| ! | AGACTCTCCACAGGTTCTGA+AGG | - | chr1.2:64164526-64164545 | None:intergenic | 50.0% |
| ! | CCAGTTTGGGATGAGAAGGA+GGG | + | chr1.2:64164259-64164278 | MS.gene07407:intron | 50.0% |
| ! | CTTCGTTCGGGGTATCAACA+GGG | - | chr1.2:64164603-64164622 | None:intergenic | 50.0% |
| ! | TCTTCGTTCGGGGTATCAAC+AGG | - | chr1.2:64164604-64164623 | None:intergenic | 50.0% |
| !! | AAACGGAAAGGTGGACTGTC+TGG | + | chr1.2:64164571-64164590 | MS.gene07407:CDS | 50.0% |
| CCCTCCTTCTCATCCCAAAC+TGG | - | chr1.2:64164262-64164281 | None:intergenic | 55.0% | |
| TGGATGGCTGCTCTTCGTTC+GGG | - | chr1.2:64164615-64164634 | None:intergenic | 55.0% | |
| AGTGACCTGATAGAGGGGCC+TGG | + | chr1.2:64164090-64164109 | MS.gene07407:intron | 60.0% | |
| GGATGGCTGCTCTTCGTTCG+GGG | - | chr1.2:64164614-64164633 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 64162875 | 64164678 | 64162875 | ID=MS.gene07407 |
| chr1.2 | mRNA | 64162875 | 64164678 | 64162875 | ID=MS.gene07407.t1;Parent=MS.gene07407 |
| chr1.2 | exon | 64162875 | 64163007 | 64162875 | ID=MS.gene07407.t1.exon1;Parent=MS.gene07407.t1 |
| chr1.2 | CDS | 64162875 | 64163007 | 64162875 | ID=cds.MS.gene07407.t1;Parent=MS.gene07407.t1 |
| chr1.2 | exon | 64164337 | 64164382 | 64164337 | ID=MS.gene07407.t1.exon2;Parent=MS.gene07407.t1 |
| chr1.2 | CDS | 64164337 | 64164382 | 64164337 | ID=cds.MS.gene07407.t1;Parent=MS.gene07407.t1 |
| chr1.2 | exon | 64164498 | 64164678 | 64164498 | ID=MS.gene07407.t1.exon3;Parent=MS.gene07407.t1 |
| chr1.2 | CDS | 64164498 | 64164678 | 64164498 | ID=cds.MS.gene07407.t1;Parent=MS.gene07407.t1 |
| Gene Sequence |
| Protein sequence |
