Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58638.t1 | GAU22270.1 | 91.3 | 46 | 4 | 0 | 1 | 46 | 165 | 210 | 6.10E-16 | 93.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58638.t1 | Q9LVZ6 | 69.6 | 46 | 14 | 0 | 1 | 46 | 225 | 270 | 2.7e-12 | 72.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58638.t1 | A0A2Z6MG63 | 91.3 | 46 | 4 | 0 | 1 | 46 | 165 | 210 | 4.4e-16 | 93.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene58638 | 0.81744 | 3.29E-52 | -1.69E-46 |
| MS.gene049272 | MS.gene58638 | 0.815508 | 8.92E-52 | -1.69E-46 |
| MS.gene050026 | MS.gene58638 | 0.85286 | 3.50E-61 | -1.69E-46 |
| MS.gene050029 | MS.gene58638 | 0.82096 | 5.20E-53 | -1.69E-46 |
| MS.gene050043 | MS.gene58638 | 0.808412 | 3.14E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene58638 | 0.813426 | 2.57E-51 | -1.69E-46 |
| MS.gene050355 | MS.gene58638 | 0.842065 | 3.25E-58 | -1.69E-46 |
| MS.gene050799 | MS.gene58638 | 0.80249 | 5.47E-49 | -1.69E-46 |
| MS.gene051181 | MS.gene58638 | 0.804905 | 1.73E-49 | -1.69E-46 |
| MS.gene051190 | MS.gene58638 | 0.800469 | 1.42E-48 | -1.69E-46 |
| MS.gene051594 | MS.gene58638 | 0.807237 | 5.58E-50 | -1.69E-46 |
| MS.gene051710 | MS.gene58638 | 0.810974 | 8.83E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene58638 | 0.811773 | 5.92E-51 | -1.69E-46 |
| MS.gene051957 | MS.gene58638 | 0.824007 | 1.02E-53 | -1.69E-46 |
| MS.gene052208 | MS.gene58638 | 0.827653 | 1.39E-54 | -1.69E-46 |
| MS.gene052333 | MS.gene58638 | 0.812854 | 3.44E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene58638 | 0.858733 | 6.73E-63 | -1.69E-46 |
| MS.gene052582 | MS.gene58638 | 0.821006 | 5.08E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene58638 | 0.830438 | 2.94E-55 | -1.69E-46 |
| MS.gene052586 | MS.gene58638 | 0.802388 | 5.75E-49 | -1.69E-46 |
| MS.gene05265 | MS.gene58638 | 0.807961 | 3.91E-50 | -1.69E-46 |
| MS.gene052685 | MS.gene58638 | 0.816837 | 4.50E-52 | -1.69E-46 |
| MS.gene052867 | MS.gene58638 | 0.808468 | 3.05E-50 | -1.69E-46 |
| MS.gene053145 | MS.gene58638 | 0.839268 | 1.75E-57 | -1.69E-46 |
| MS.gene053166 | MS.gene58638 | 0.813416 | 2.59E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene58638 | 0.813552 | 2.42E-51 | -1.69E-46 |
| MS.gene053512 | MS.gene58638 | 0.823488 | 1.35E-53 | -1.69E-46 |
| MS.gene053592 | MS.gene58638 | 0.807464 | 4.99E-50 | -1.69E-46 |
| MS.gene053646 | MS.gene58638 | 0.803734 | 3.03E-49 | -1.69E-46 |
| MS.gene053647 | MS.gene58638 | 0.808409 | 3.14E-50 | -1.69E-46 |
| MS.gene053966 | MS.gene58638 | 0.814508 | 1.49E-51 | -1.69E-46 |
| MS.gene053974 | MS.gene58638 | 0.835936 | 1.25E-56 | -1.69E-46 |
| MS.gene05414 | MS.gene58638 | 0.819623 | 1.05E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene58638 | 0.804661 | 1.94E-49 | -1.69E-46 |
| MS.gene054236 | MS.gene58638 | 0.844627 | 6.72E-59 | -1.69E-46 |
| MS.gene05423 | MS.gene58638 | 0.818478 | 1.92E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene58638 | -0.809239 | 2.09E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene58638 | 0.812241 | 4.68E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene58638 | 0.800572 | 1.35E-48 | -1.69E-46 |
| MS.gene054559 | MS.gene58638 | 0.814821 | 1.27E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene58638 | 0.845577 | 3.72E-59 | -1.69E-46 |
| MS.gene054775 | MS.gene58638 | 0.836882 | 7.21E-57 | -1.69E-46 |
| MS.gene054991 | MS.gene58638 | 0.81137 | 7.24E-51 | -1.69E-46 |
| MS.gene055166 | MS.gene58638 | 0.813872 | 2.05E-51 | -1.69E-46 |
| MS.gene055228 | MS.gene58638 | 0.811245 | 7.71E-51 | -1.69E-46 |
| MS.gene055586 | MS.gene58638 | 0.80073 | 1.26E-48 | -1.69E-46 |
| MS.gene055589 | MS.gene58638 | 0.822817 | 1.93E-53 | -1.69E-46 |
| MS.gene055778 | MS.gene58638 | 0.809151 | 2.18E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene58638 | 0.837049 | 6.53E-57 | -1.69E-46 |
| MS.gene055875 | MS.gene58638 | 0.807662 | 4.53E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene58638 | 0.812256 | 4.64E-51 | -1.69E-46 |
| MS.gene056162 | MS.gene58638 | 0.811945 | 5.43E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene58638 | 0.83058 | 2.71E-55 | -1.69E-46 |
| MS.gene056252 | MS.gene58638 | 0.801488 | 8.79E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene58638 | 0.806874 | 6.66E-50 | -1.69E-46 |
| MS.gene056854 | MS.gene58638 | 0.825421 | 4.73E-54 | -1.69E-46 |
| MS.gene05686 | MS.gene58638 | 0.817221 | 3.69E-52 | -1.69E-46 |
| MS.gene05690 | MS.gene58638 | 0.821135 | 4.74E-53 | -1.69E-46 |
| MS.gene057026 | MS.gene58638 | 0.834221 | 3.40E-56 | -1.69E-46 |
| MS.gene057208 | MS.gene58638 | 0.805342 | 1.40E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene58638 | 0.81793 | 2.55E-52 | -1.69E-46 |
| MS.gene057921 | MS.gene58638 | 0.835426 | 1.69E-56 | -1.69E-46 |
| MS.gene058037 | MS.gene58638 | 0.846108 | 2.67E-59 | -1.69E-46 |
| MS.gene058625 | MS.gene58638 | 0.848153 | 7.35E-60 | -1.69E-46 |
| MS.gene058783 | MS.gene58638 | 0.813468 | 2.52E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene58638 | 0.827104 | 1.88E-54 | -1.69E-46 |
| MS.gene059272 | MS.gene58638 | 0.852467 | 4.53E-61 | -1.69E-46 |
| MS.gene059276 | MS.gene58638 | 0.835783 | 1.37E-56 | -1.69E-46 |
| MS.gene059550 | MS.gene58638 | 0.801235 | 9.91E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene58638 | 0.817618 | 3.00E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene58638 | 0.834719 | 2.55E-56 | -1.69E-46 |
| MS.gene060167 | MS.gene58638 | 0.810644 | 1.04E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene58638 | 0.804387 | 2.21E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene58638 | 0.823485 | 1.35E-53 | -1.69E-46 |
| MS.gene061091 | MS.gene58638 | 0.817032 | 4.07E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58638.t1 | MTR_4g010120 | 91.304 | 46 | 4 | 0 | 1 | 46 | 208 | 253 | 1.06e-23 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58638.t1 | AT3G15830 | 69.565 | 46 | 14 | 0 | 1 | 46 | 225 | 270 | 3.75e-17 | 74.7 |
| MS.gene58638.t1 | AT3G15820 | 71.739 | 46 | 13 | 0 | 1 | 46 | 230 | 275 | 6.29e-17 | 74.3 |
Find 24 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCCATTACACTATTGATT+TGG | 0.346538 | 2.3:-54008060 | MS.gene58638:CDS |
| TACACTATTGATTTGGCTGT+TGG | 0.354110 | 2.3:-54008053 | MS.gene58638:CDS |
| AGAATTACAGTTGTAGTTGC+AGG | 0.356787 | 2.3:+54007736 | None:intergenic |
| ACGTTGATGGAGATCATATT+GGG | 0.370369 | 2.3:+54006717 | None:intergenic |
| TTTGCAAAGTGATACAGATC+TGG | 0.383408 | 2.3:+54006877 | None:intergenic |
| ATTGATTTGGCTGTTGGGTT+AGG | 0.392652 | 2.3:-54008047 | MS.gene58638:CDS |
| TATATATTTGACTCTTTAGC+TGG | 0.413885 | 2.3:-54008017 | MS.gene58638:intron |
| GATCTCCATCAACGTACTTC+CGG | 0.414469 | 2.3:-54006709 | MS.gene58638:CDS |
| TACGTTGATGGAGATCATAT+TGG | 0.416147 | 2.3:+54006716 | None:intergenic |
| ACACTATTGATTTGGCTGTT+GGG | 0.428713 | 2.3:-54008052 | MS.gene58638:CDS |
| GTAGTTGCAGGTAAGAAAAC+AGG | 0.434271 | 2.3:+54007748 | None:intergenic |
| TAGGGAGTGTGTTGTGTGTC+CGG | 0.469707 | 2.3:+54006690 | None:intergenic |
| TTGGCTGTTGGGTTAGGTGT+TGG | 0.480803 | 2.3:-54008041 | MS.gene58638:CDS |
| ACATAAGGAGGATGAAGAGA+TGG | 0.487913 | 2.3:-54008145 | None:intergenic |
| CATAAGGAGGATGAAGAGAT+GGG | 0.500874 | 2.3:-54008144 | None:intergenic |
| TTGCAAGCTGTGAGATTGCT+TGG | 0.504819 | 2.3:-54008089 | MS.gene58638:CDS |
| TTGCAAAGTGATACAGATCT+GGG | 0.515328 | 2.3:+54006878 | None:intergenic |
| GAGGATGAAGAGATGGGAGA+TGG | 0.518694 | 2.3:-54008138 | None:intergenic |
| CAGCCAAATCAATAGTGTAA+TGG | 0.530095 | 2.3:+54008057 | None:intergenic |
| TGAAGAGATGGGAGATGGCA+TGG | 0.534871 | 2.3:-54008133 | MS.gene58638:CDS |
| TGTGTCCGGAAGTACGTTGA+TGG | 0.546746 | 2.3:+54006704 | None:intergenic |
| GTGAGATTGCTTGGTACAAG+AGG | 0.582736 | 2.3:-54008080 | MS.gene58638:CDS |
| TAGACAAACATCTCAAGTGA+TGG | 0.600061 | 2.3:-54006830 | MS.gene58638:intron |
| CGTTGATGGAGATCATATTG+GGG | 0.666163 | 2.3:+54006718 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGTTAGAGACAAATAAA+TGG | + | chr2.3:54007453-54007472 | None:intergenic | 20.0% |
| !! | ATAGCTAAAAATAGTATCAA+TGG | - | chr2.3:54006857-54006876 | MS.gene58638:CDS | 20.0% |
| !! | TAAACATTATCATTTGTTCA+AGG | - | chr2.3:54007659-54007678 | MS.gene58638:intron | 20.0% |
| !! | TTAGTGTTTAAGTGTTTATT+AGG | - | chr2.3:54007358-54007377 | MS.gene58638:intron | 20.0% |
| !! | TTTCTATAACAGATTTAGTT+TGG | - | chr2.3:54007405-54007424 | MS.gene58638:intron | 20.0% |
| !!! | ATTGTTTGTGCTTTTTAAAT+TGG | - | chr2.3:54007326-54007345 | MS.gene58638:intron | 20.0% |
| ! | AAAAAAGGTAACTAAACCTT+GGG | - | chr2.3:54007966-54007985 | MS.gene58638:intron | 25.0% |
| ! | AAATATTAAAGCAGTAGTGT+AGG | + | chr2.3:54008028-54008047 | None:intergenic | 25.0% |
| ! | GTTATAGAAAATATTCCCAA+AGG | + | chr2.3:54007395-54007414 | None:intergenic | 25.0% |
| ! | TAAACCAAATTATGCGAATT+AGG | + | chr2.3:54007701-54007720 | None:intergenic | 25.0% |
| ! | TATAGGCTATAGTTTATTAG+AGG | - | chr2.3:54007298-54007317 | MS.gene58638:intron | 25.0% |
| ! | TATATATTTGACTCTTTAGC+TGG | - | chr2.3:54006806-54006825 | MS.gene58638:intron | 25.0% |
| ! | TTCACTAAAAAAGATTGCAA+AGG | + | chr2.3:54007130-54007149 | None:intergenic | 25.0% |
| !! | GATCTTTTTAAACTCTCAAA+TGG | + | chr2.3:54007536-54007555 | None:intergenic | 25.0% |
| !! | GCATACTTAATTTGATGTTA+GGG | - | chr2.3:54007205-54007224 | MS.gene58638:intron | 25.0% |
| !! | TTAAAAAGCACAAACAATGT+TGG | + | chr2.3:54007324-54007343 | None:intergenic | 25.0% |
| AAAACTGCTACTGTTATGAT+GGG | - | chr2.3:54007037-54007056 | MS.gene58638:intron | 30.0% | |
| AAAAGGGAAACATACCAATA+AGG | - | chr2.3:54006930-54006949 | MS.gene58638:intron | 30.0% | |
| ATAAATAGGACAAATCCACT+TGG | + | chr2.3:54007580-54007599 | None:intergenic | 30.0% | |
| ATTTGGTTGCATGAACAATT+TGG | - | chr2.3:54006897-54006916 | MS.gene58638:CDS | 30.0% | |
| CAAAAAAGGTAACTAAACCT+TGG | - | chr2.3:54007965-54007984 | MS.gene58638:intron | 30.0% | |
| GTTTATGCTCAAATATGTAC+AGG | - | chr2.3:54007183-54007202 | MS.gene58638:intron | 30.0% | |
| TAAATAGGACAAATCCACTT+GGG | + | chr2.3:54007579-54007598 | None:intergenic | 30.0% | |
| TACACCTAATTCGCATAATT+TGG | - | chr2.3:54007694-54007713 | MS.gene58638:intron | 30.0% | |
| TCTGTATCACTTTGCAAAAA+AGG | - | chr2.3:54007951-54007970 | MS.gene58638:intron | 30.0% | |
| TGCTTGTCTATTATCCTTAT+TGG | + | chr2.3:54006947-54006966 | None:intergenic | 30.0% | |
| TTTCTATGATTCTCCAGTTT+AGG | + | chr2.3:54007621-54007640 | None:intergenic | 30.0% | |
| TTTGGTTGCATGAACAATTT+GGG | - | chr2.3:54006898-54006917 | MS.gene58638:CDS | 30.0% | |
| ! | AGTGAAGTCTTGTATAAATC+AGG | - | chr2.3:54007144-54007163 | MS.gene58638:intron | 30.0% |
| ! | GGCATACTTAATTTGATGTT+AGG | - | chr2.3:54007204-54007223 | MS.gene58638:intron | 30.0% |
| ! | TTAATTTGATGTTAGGGTTG+TGG | - | chr2.3:54007211-54007230 | MS.gene58638:intron | 30.0% |
| ! | TTATTGGTATGTTTCCCTTT+TGG | + | chr2.3:54006931-54006950 | None:intergenic | 30.0% |
| !! | ATGTTGACATTTGCTATTAG+TGG | - | chr2.3:54007253-54007272 | MS.gene58638:intron | 30.0% |
| !! | TGTTGACATTTGCTATTAGT+GGG | - | chr2.3:54007254-54007273 | MS.gene58638:intron | 30.0% |
| AAACTGCTACTGTTATGATG+GGG | - | chr2.3:54007038-54007057 | MS.gene58638:intron | 35.0% | |
| ACAATGTGTGTATGTTTGGA+TGG | - | chr2.3:54006968-54006987 | MS.gene58638:intron | 35.0% | |
| AGAATTACAGTTGTAGTTGC+AGG | + | chr2.3:54007090-54007109 | None:intergenic | 35.0% | |
| CAAAACTGCTACTGTTATGA+TGG | - | chr2.3:54007036-54007055 | MS.gene58638:intron | 35.0% | |
| CAATGTGTGTATGTTTGGAT+GGG | - | chr2.3:54006969-54006988 | MS.gene58638:intron | 35.0% | |
| CAGCCAAATCAATAGTGTAA+TGG | + | chr2.3:54006769-54006788 | None:intergenic | 35.0% | |
| TAGACAAACATCTCAAGTGA+TGG | - | chr2.3:54007993-54008012 | MS.gene58638:intron | 35.0% | |
| TCATGCAACCAAATCATGTT+TGG | + | chr2.3:54006891-54006910 | None:intergenic | 35.0% | |
| TCATTCCTCCAAACATGATT+TGG | - | chr2.3:54006880-54006899 | MS.gene58638:CDS | 35.0% | |
| TTGCAAAGTGATACAGATCT+GGG | + | chr2.3:54007948-54007967 | None:intergenic | 35.0% | |
| TTTGCAAAGTGATACAGATC+TGG | + | chr2.3:54007949-54007968 | None:intergenic | 35.0% | |
| ! | ACGTTGATGGAGATCATATT+GGG | + | chr2.3:54008109-54008128 | None:intergenic | 35.0% |
| ! | AGGCCATTACACTATTGATT+TGG | - | chr2.3:54006763-54006782 | MS.gene58638:intron | 35.0% |
| ! | GATGTTTGTCTATTTTCCCA+AGG | + | chr2.3:54007985-54008004 | None:intergenic | 35.0% |
| ! | TACGTTGATGGAGATCATAT+TGG | + | chr2.3:54008110-54008129 | None:intergenic | 35.0% |
| !! | ACACTATTGATTTGGCTGTT+GGG | - | chr2.3:54006771-54006790 | MS.gene58638:intron | 35.0% |
| !! | ATAGTGTTGGCACTTACTAT+AGG | - | chr2.3:54007281-54007300 | MS.gene58638:intron | 35.0% |
| !! | TACACTATTGATTTGGCTGT+TGG | - | chr2.3:54006770-54006789 | MS.gene58638:intron | 35.0% |
| !!! | TAGGCTGCTATTTTTCCTTT+GGG | - | chr2.3:54007377-54007396 | MS.gene58638:intron | 35.0% |
| !!! | TTAGGCTGCTATTTTTCCTT+TGG | - | chr2.3:54007376-54007395 | MS.gene58638:intron | 35.0% |
| AAAATAGCATGACTTCGCAC+AGG | + | chr2.3:54007853-54007872 | None:intergenic | 40.0% | |
| ATTAGTGGGACGTATAGTGT+TGG | - | chr2.3:54007268-54007287 | MS.gene58638:intron | 40.0% | |
| GAAGGTGGTGTGTGATAAAT+AGG | + | chr2.3:54007594-54007613 | None:intergenic | 40.0% | |
| GCAGACAATGTGTGTATGTT+TGG | - | chr2.3:54006964-54006983 | MS.gene58638:intron | 40.0% | |
| GTAGTTGCAGGTAAGAAAAC+AGG | + | chr2.3:54007078-54007097 | None:intergenic | 40.0% | |
| GTTAGGGTTGTGGAAAGATT+TGG | - | chr2.3:54007221-54007240 | MS.gene58638:intron | 40.0% | |
| TGCAACCAAATCATGTTTGG+AGG | + | chr2.3:54006888-54006907 | None:intergenic | 40.0% | |
| ! | AATTTGGGACTCTAGCCAAA+AGG | - | chr2.3:54006913-54006932 | MS.gene58638:CDS | 40.0% |
| ! | ATTTGGGACTCTAGCCAAAA+GGG | - | chr2.3:54006914-54006933 | MS.gene58638:CDS | 40.0% |
| ! | CGTTGATGGAGATCATATTG+GGG | + | chr2.3:54008108-54008127 | None:intergenic | 40.0% |
| !! | ATTGATTTGGCTGTTGGGTT+AGG | - | chr2.3:54006776-54006795 | MS.gene58638:intron | 40.0% |
| !! | TATTGGGGAAGTGCTAGAAA+AGG | + | chr2.3:54008093-54008112 | None:intergenic | 40.0% |
| CCACTTGGGTAACAACTTTG+AGG | + | chr2.3:54007565-54007584 | None:intergenic | 45.0% | |
| CCTCAAAGTTGTTACCCAAG+TGG | - | chr2.3:54007562-54007581 | MS.gene58638:intron | 45.0% | |
| GATCTCCATCAACGTACTTC+CGG | - | chr2.3:54008114-54008133 | MS.gene58638:CDS | 45.0% | |
| GTGAGATTGCTTGGTACAAG+AGG | - | chr2.3:54006743-54006762 | MS.gene58638:intron | 45.0% | |
| TGTGTGTATGTTTGGATGGG+AGG | - | chr2.3:54006972-54006991 | MS.gene58638:intron | 45.0% | |
| TTCTCCAGTTTAGGCACAGA+AGG | + | chr2.3:54007612-54007631 | None:intergenic | 45.0% | |
| TTGCAAGCTGTGAGATTGCT+TGG | - | chr2.3:54006734-54006753 | MS.gene58638:intron | 45.0% | |
| ! | AGGTGATTTTGTCGACGACA+TGG | - | chr2.3:54006992-54007011 | MS.gene58638:intron | 45.0% |
| ! | GGTAACAACTTTGAGGACTC+AGG | + | chr2.3:54007558-54007577 | None:intergenic | 45.0% |
| ! | TGATTTTGTCGACGACATGG+TGG | - | chr2.3:54006995-54007014 | MS.gene58638:intron | 45.0% |
| !! | TCTTAAAAAAAAAAAAAAAA+AGG | + | chr2.3:54007731-54007750 | None:intergenic | 5.0% |
| !!! | TTTTATATCATAATTTTTTT+TGG | - | chr2.3:54007775-54007794 | MS.gene58638:intron | 5.0% |
| ACCACCTTCTGTGCCTAAAC+TGG | - | chr2.3:54007605-54007624 | MS.gene58638:intron | 50.0% | |
| TCCAGTTTAGGCACAGAAGG+TGG | + | chr2.3:54007609-54007628 | None:intergenic | 50.0% | |
| TGAAGAGATGGGAGATGGCA+TGG | - | chr2.3:54006690-54006709 | MS.gene58638:CDS | 50.0% | |
| ! | TAGGGAGTGTGTTGTGTGTC+CGG | + | chr2.3:54008136-54008155 | None:intergenic | 50.0% |
| ! | TGTGTCCGGAAGTACGTTGA+TGG | + | chr2.3:54008122-54008141 | None:intergenic | 50.0% |
| ! | TTGGCTGTTGGGTTAGGTGT+TGG | - | chr2.3:54006782-54006801 | MS.gene58638:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 54006689 | 54008156 | 54006689 | ID=MS.gene58638 |
| chr2.3 | mRNA | 54006689 | 54008156 | 54006689 | ID=MS.gene58638.t1;Parent=MS.gene58638 |
| chr2.3 | exon | 54008018 | 54008156 | 54008018 | ID=MS.gene58638.t1.exon1;Parent=MS.gene58638.t1 |
| chr2.3 | CDS | 54008018 | 54008156 | 54008018 | ID=cds.MS.gene58638.t1;Parent=MS.gene58638.t1 |
| chr2.3 | exon | 54007744 | 54007772 | 54007744 | ID=MS.gene58638.t1.exon2;Parent=MS.gene58638.t1 |
| chr2.3 | CDS | 54007744 | 54007772 | 54007744 | ID=cds.MS.gene58638.t1;Parent=MS.gene58638.t1 |
| chr2.3 | exon | 54006831 | 54006935 | 54006831 | ID=MS.gene58638.t1.exon3;Parent=MS.gene58638.t1 |
| chr2.3 | CDS | 54006831 | 54006935 | 54006831 | ID=cds.MS.gene58638.t1;Parent=MS.gene58638.t1 |
| chr2.3 | exon | 54006689 | 54006745 | 54006689 | ID=MS.gene58638.t1.exon4;Parent=MS.gene58638.t1 |
| chr2.3 | CDS | 54006689 | 54006745 | 54006689 | ID=cds.MS.gene58638.t1;Parent=MS.gene58638.t1 |
| Gene Sequence |
| Protein sequence |
