Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23190.t1 | XP_013448409.1 | 94.8 | 134 | 7 | 0 | 1 | 134 | 152 | 285 | 6.80E-33 | 150.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23190.t1 | F4JIP6 | 64.0 | 125 | 45 | 0 | 1 | 125 | 169 | 293 | 3.5e-22 | 105.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23190.t1 | A2Q2M3 | 94.8 | 134 | 7 | 0 | 1 | 134 | 152 | 285 | 4.9e-33 | 150.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene23190 | 0.814746 | 1.32E-51 | -1.69E-46 |
| MS.gene049159 | MS.gene23190 | 0.813707 | 2.23E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene23190 | 0.837795 | 4.21E-57 | -1.69E-46 |
| MS.gene049272 | MS.gene23190 | 0.814396 | 1.57E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene23190 | 0.815406 | 9.40E-52 | -1.69E-46 |
| MS.gene049435 | MS.gene23190 | 0.816081 | 6.64E-52 | -1.69E-46 |
| MS.gene049501 | MS.gene23190 | 0.828083 | 1.09E-54 | -1.69E-46 |
| MS.gene049647 | MS.gene23190 | 0.80856 | 2.92E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene23190 | 0.807391 | 5.17E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene23190 | 0.827599 | 1.43E-54 | -1.69E-46 |
| MS.gene049873 | MS.gene23190 | 0.80516 | 1.53E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene23190 | 0.807176 | 5.74E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene23190 | 0.845588 | 3.70E-59 | -1.69E-46 |
| MS.gene050201 | MS.gene23190 | 0.800374 | 1.48E-48 | -1.69E-46 |
| MS.gene050355 | MS.gene23190 | 0.819733 | 9.95E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene23190 | 0.817651 | 2.95E-52 | -1.69E-46 |
| MS.gene050559 | MS.gene23190 | 0.827789 | 1.29E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene23190 | 0.829254 | 5.70E-55 | -1.69E-46 |
| MS.gene050562 | MS.gene23190 | 0.812337 | 4.46E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene23190 | 0.820757 | 5.79E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene23190 | 0.822705 | 2.05E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene23190 | 0.80913 | 2.20E-50 | -1.69E-46 |
| MS.gene050780 | MS.gene23190 | 0.820789 | 5.70E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene23190 | 0.812671 | 3.77E-51 | -1.69E-46 |
| MS.gene050844 | MS.gene23190 | 0.859876 | 3.05E-63 | -1.69E-46 |
| MS.gene051247 | MS.gene23190 | 0.841021 | 6.12E-58 | -1.69E-46 |
| MS.gene05125 | MS.gene23190 | 0.815253 | 1.02E-51 | -1.69E-46 |
| MS.gene051265 | MS.gene23190 | 0.808887 | 2.48E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene23190 | 0.801778 | 7.67E-49 | -1.69E-46 |
| MS.gene051388 | MS.gene23190 | 0.834466 | 2.95E-56 | -1.69E-46 |
| MS.gene051594 | MS.gene23190 | 0.816339 | 5.82E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene23190 | 0.829507 | 4.95E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene23190 | 0.803717 | 3.05E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene23190 | 0.835527 | 1.59E-56 | -1.69E-46 |
| MS.gene051935 | MS.gene23190 | 0.805774 | 1.13E-49 | -1.69E-46 |
| MS.gene051957 | MS.gene23190 | 0.835129 | 2.01E-56 | -1.69E-46 |
| MS.gene052020 | MS.gene23190 | 0.809151 | 2.18E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene23190 | 0.813586 | 2.37E-51 | -1.69E-46 |
| MS.gene052208 | MS.gene23190 | 0.814075 | 1.85E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene23190 | 0.806982 | 6.31E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene23190 | 0.819275 | 1.26E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene23190 | 0.852188 | 5.44E-61 | -1.69E-46 |
| MS.gene052582 | MS.gene23190 | 0.803242 | 3.83E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene23190 | 0.811858 | 5.67E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene23190 | 0.822672 | 2.09E-53 | -1.69E-46 |
| MS.gene052773 | MS.gene23190 | 0.84015 | 1.03E-57 | -1.69E-46 |
| MS.gene052863 | MS.gene23190 | 0.854719 | 1.02E-61 | -1.69E-46 |
| MS.gene052896 | MS.gene23190 | 0.818424 | 1.97E-52 | -1.69E-46 |
| MS.gene053145 | MS.gene23190 | 0.805834 | 1.10E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene23190 | 0.822094 | 2.85E-53 | -1.69E-46 |
| MS.gene053201 | MS.gene23190 | 0.809003 | 2.34E-50 | -1.69E-46 |
| MS.gene053221 | MS.gene23190 | 0.813217 | 2.86E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene23190 | 0.826911 | 2.09E-54 | -1.69E-46 |
| MS.gene053599 | MS.gene23190 | 0.819096 | 1.39E-52 | -1.69E-46 |
| MS.gene053883 | MS.gene23190 | 0.803621 | 3.19E-49 | -1.69E-46 |
| MS.gene053900 | MS.gene23190 | 0.812302 | 4.54E-51 | -1.69E-46 |
| MS.gene053966 | MS.gene23190 | 0.828128 | 1.07E-54 | -1.69E-46 |
| MS.gene053967 | MS.gene23190 | 0.808682 | 2.75E-50 | -1.69E-46 |
| MS.gene053998 | MS.gene23190 | 0.832374 | 9.80E-56 | -1.69E-46 |
| MS.gene05414 | MS.gene23190 | 0.821496 | 3.92E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene23190 | 0.834196 | 3.45E-56 | -1.69E-46 |
| MS.gene054236 | MS.gene23190 | 0.835725 | 1.42E-56 | -1.69E-46 |
| MS.gene05423 | MS.gene23190 | 0.822045 | 2.92E-53 | -1.69E-46 |
| MS.gene054467 | MS.gene23190 | 0.818825 | 1.60E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene23190 | 0.826973 | 2.02E-54 | -1.69E-46 |
| MS.gene054472 | MS.gene23190 | 0.83166 | 1.47E-55 | -1.69E-46 |
| MS.gene054651 | MS.gene23190 | 0.842421 | 2.61E-58 | -1.69E-46 |
| MS.gene05468 | MS.gene23190 | 0.821316 | 4.31E-53 | -1.69E-46 |
| MS.gene054775 | MS.gene23190 | 0.817155 | 3.82E-52 | -1.69E-46 |
| MS.gene055227 | MS.gene23190 | 0.824719 | 6.93E-54 | -1.69E-46 |
| MS.gene055228 | MS.gene23190 | 0.808688 | 2.74E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene23190 | 0.813029 | 3.15E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene23190 | 0.809723 | 1.64E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene23190 | 0.83163 | 1.50E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene23190 | 0.820765 | 5.77E-53 | -1.69E-46 |
| MS.gene055608 | MS.gene23190 | 0.807936 | 3.96E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene23190 | 0.800537 | 1.38E-48 | -1.69E-46 |
| MS.gene055778 | MS.gene23190 | 0.809404 | 1.92E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene23190 | 0.867605 | 1.21E-65 | -1.69E-46 |
| MS.gene055926 | MS.gene23190 | 0.823219 | 1.56E-53 | -1.69E-46 |
| MS.gene05604 | MS.gene23190 | 0.826092 | 3.28E-54 | -1.69E-46 |
| MS.gene056050 | MS.gene23190 | 0.818412 | 1.99E-52 | -1.69E-46 |
| MS.gene056162 | MS.gene23190 | 0.826958 | 2.04E-54 | -1.69E-46 |
| MS.gene056173 | MS.gene23190 | 0.819142 | 1.36E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene23190 | 0.81889 | 1.55E-52 | -1.69E-46 |
| MS.gene056366 | MS.gene23190 | 0.826588 | 2.50E-54 | -1.69E-46 |
| MS.gene056373 | MS.gene23190 | 0.824439 | 8.07E-54 | -1.69E-46 |
| MS.gene056553 | MS.gene23190 | 0.821668 | 3.57E-53 | -1.69E-46 |
| MS.gene056595 | MS.gene23190 | 0.832495 | 9.15E-56 | -1.69E-46 |
| MS.gene05690 | MS.gene23190 | 0.800813 | 1.21E-48 | -1.69E-46 |
| MS.gene057021 | MS.gene23190 | 0.801935 | 7.12E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene23190 | 0.852846 | 3.53E-61 | -1.69E-46 |
| MS.gene057060 | MS.gene23190 | 0.824375 | 8.35E-54 | -1.69E-46 |
| MS.gene057414 | MS.gene23190 | 0.81516 | 1.07E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene23190 | 0.819776 | 9.72E-53 | -1.69E-46 |
| MS.gene057693 | MS.gene23190 | 0.811873 | 5.63E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene23190 | 0.809884 | 1.52E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene23190 | 0.824425 | 8.13E-54 | -1.69E-46 |
| MS.gene058009 | MS.gene23190 | 0.805832 | 1.10E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene23190 | 0.806659 | 7.39E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene23190 | 0.831622 | 1.50E-55 | -1.69E-46 |
| MS.gene058625 | MS.gene23190 | 0.864211 | 1.43E-64 | -1.69E-46 |
| MS.gene058636 | MS.gene23190 | 0.813855 | 2.07E-51 | -1.69E-46 |
| MS.gene058829 | MS.gene23190 | 0.831825 | 1.34E-55 | -1.69E-46 |
| MS.gene058979 | MS.gene23190 | 0.838567 | 2.66E-57 | -1.69E-46 |
| MS.gene059015 | MS.gene23190 | 0.821698 | 3.52E-53 | -1.69E-46 |
| MS.gene059272 | MS.gene23190 | 0.827662 | 1.38E-54 | -1.69E-46 |
| MS.gene05954 | MS.gene23190 | 0.812404 | 4.31E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene23190 | 0.80521 | 1.49E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene23190 | 0.825781 | 3.89E-54 | -1.69E-46 |
| MS.gene059789 | MS.gene23190 | 0.804585 | 2.01E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene23190 | 0.809919 | 1.49E-50 | -1.69E-46 |
| MS.gene060167 | MS.gene23190 | 0.801467 | 8.88E-49 | -1.69E-46 |
| MS.gene060312 | MS.gene23190 | 0.818197 | 2.22E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene23190 | 0.848362 | 6.43E-60 | -1.69E-46 |
| MS.gene060521 | MS.gene23190 | 0.81625 | 6.09E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene23190 | 0.819203 | 1.31E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene23190 | 0.817321 | 3.50E-52 | -1.69E-46 |
| MS.gene060781 | MS.gene23190 | 0.832666 | 8.30E-56 | -1.69E-46 |
| MS.gene061091 | MS.gene23190 | 0.804631 | 1.97E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23190.t1 | MTR_7g451810 | 97.015 | 134 | 4 | 0 | 1 | 134 | 152 | 285 | 1.06e-92 | 270 |
| MS.gene23190.t1 | MTR_7g047630 | 97.015 | 134 | 4 | 0 | 1 | 134 | 152 | 285 | 1.06e-92 | 270 |
| MS.gene23190.t1 | MTR_7g047660 | 59.701 | 67 | 20 | 2 | 66 | 132 | 76 | 135 | 4.22e-18 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23190.t1 | AT4G05210 | 80.469 | 128 | 25 | 0 | 1 | 128 | 158 | 285 | 3.34e-73 | 220 |
| MS.gene23190.t1 | AT4G05210 | 80.469 | 128 | 25 | 0 | 1 | 128 | 176 | 303 | 8.98e-73 | 220 |
| MS.gene23190.t1 | AT4G21220 | 79.200 | 125 | 26 | 0 | 1 | 125 | 169 | 293 | 1.71e-70 | 214 |
| MS.gene23190.t1 | AT4G05210 | 67.320 | 153 | 25 | 1 | 1 | 128 | 170 | 322 | 4.21e-67 | 206 |
Find 35 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGGAGAGATACATTTAT+TGG | 0.239574 | 7.2:-51816546 | MS.gene23190:CDS |
| ATTGGCCACAATGTAGTTAT+TGG | 0.252137 | 7.2:-51816414 | MS.gene23190:CDS |
| ATCACAGAACCTGGAGATTA+TGG | 0.315331 | 7.2:-51815618 | MS.gene23190:CDS |
| TGTGGACAAGTTGGGATTGC+AGG | 0.325045 | 7.2:-51816375 | MS.gene23190:CDS |
| CAGAAGCTCAATGTAATAGT+AGG | 0.355997 | 7.2:-51816965 | MS.gene23190:CDS |
| GTAGGGAACAATGTGGAAAT+TGG | 0.367733 | 7.2:-51816947 | MS.gene23190:CDS |
| GAAGATAGATAATTTAGTTC+AGG | 0.370626 | 7.2:-51816514 | MS.gene23190:intron |
| GCTGGAGAGATACATTTATT+GGG | 0.371063 | 7.2:-51816545 | MS.gene23190:CDS |
| TTGGCCACAATGTAGTTATT+GGG | 0.373724 | 7.2:-51816413 | MS.gene23190:CDS |
| TCCAGGTTCTGTGATGTCCT+TGG | 0.461823 | 7.2:+51815626 | None:intergenic |
| GTGCAAATACATGCATTGAC+AGG | 0.462960 | 7.2:-51816925 | MS.gene23190:CDS |
| ATTATGTGACGATGGGAGGA+AGG | 0.470760 | 7.2:-51816214 | MS.gene23190:CDS |
| TGTAGGTTTCTATTCACAAA+TGG | 0.471353 | 7.2:-51815456 | MS.gene23190:intron |
| ACCAAGGACATCACAGAACC+TGG | 0.502358 | 7.2:-51815627 | MS.gene23190:CDS |
| GCATGCTATGTGGACAAGTT+GGG | 0.509568 | 7.2:-51816383 | MS.gene23190:CDS |
| TGCATGCTATGTGGACAAGT+TGG | 0.510465 | 7.2:-51816384 | MS.gene23190:CDS |
| TCCTCTAACTGCAAAACTGC+TGG | 0.516609 | 7.2:+51815420 | None:intergenic |
| TCATGTATCGATTGCATCAA+AGG | 0.517806 | 7.2:-51816177 | MS.gene23190:intron |
| ATACATGCATTGACAGGGGC+AGG | 0.537225 | 7.2:-51816919 | MS.gene23190:intron |
| AGAAGCTCAATGTAATAGTA+GGG | 0.553263 | 7.2:-51816964 | MS.gene23190:CDS |
| GGAAAGCCACCATAATCTCC+AGG | 0.557434 | 7.2:+51815609 | None:intergenic |
| TGCAAATACATGCATTGACA+GGG | 0.560693 | 7.2:-51816924 | MS.gene23190:CDS |
| GGAGATTATGTGACGATGGG+AGG | 0.576832 | 7.2:-51816218 | MS.gene23190:CDS |
| CATAGGAGATTATGTGACGA+TGG | 0.588173 | 7.2:-51816222 | MS.gene23190:CDS |
| TTATGTGACGATGGGAGGAA+GGG | 0.590326 | 7.2:-51816213 | MS.gene23190:CDS |
| AGGTTTCTATTCACAAATGG+CGG | 0.594531 | 7.2:-51815453 | MS.gene23190:CDS |
| ATAGGAGATTATGTGACGAT+GGG | 0.605328 | 7.2:-51816221 | MS.gene23190:CDS |
| CTGGAGAGATACATTTATTG+GGG | 0.609991 | 7.2:-51816544 | MS.gene23190:CDS |
| TGCGTTAAGTTGTGTAACCA+AGG | 0.629797 | 7.2:-51815643 | MS.gene23190:CDS |
| TAACATGATAAAGAAGCCAC+AGG | 0.643538 | 7.2:-51817109 | None:intergenic |
| TCTTCCCAATAACTACATTG+TGG | 0.648401 | 7.2:+51816409 | None:intergenic |
| GGGAAGAATTGCATGCTATG+TGG | 0.655876 | 7.2:-51816393 | MS.gene23190:CDS |
| ACAGAACCTGGAGATTATGG+TGG | 0.680720 | 7.2:-51815615 | MS.gene23190:CDS |
| TGTAATAGTAGGGAACAATG+TGG | 0.718516 | 7.2:-51816954 | MS.gene23190:CDS |
| GCAAATACATGCATTGACAG+GGG | 0.723551 | 7.2:-51816923 | MS.gene23190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTACTGTTTGTAAATT+GGG | - | chr7.2:51816797-51816816 | MS.gene23190:intron | 15.0% |
| !!! | TATTTTTACTGTTTGTAAAT+TGG | - | chr7.2:51816796-51816815 | MS.gene23190:intron | 15.0% |
| !! | AACTAATTATATTCACTCAT+TGG | - | chr7.2:51815944-51815963 | MS.gene23190:intron | 20.0% |
| !! | AAGAAACTTTCAACATATAT+AGG | + | chr7.2:51815466-51815485 | None:intergenic | 20.0% |
| !! | ATATCAAACTATAATGATCT+TGG | - | chr7.2:51816463-51816482 | MS.gene23190:intron | 20.0% |
| !! | ATTAGTTAGAAAATTACAAG+AGG | - | chr7.2:51815759-51815778 | MS.gene23190:intron | 20.0% |
| !! | TTAAAGATTTGAAAGACATT+GGG | - | chr7.2:51816500-51816519 | MS.gene23190:intron | 20.0% |
| !!! | ACATGTTTTTTTTTTACAAG+AGG | - | chr7.2:51816530-51816549 | MS.gene23190:CDS | 20.0% |
| !!! | GTTGTTATCTAGTAAATTTT+GGG | - | chr7.2:51816198-51816217 | MS.gene23190:CDS | 20.0% |
| !!! | TGTTGTTATCTAGTAAATTT+TGG | - | chr7.2:51816197-51816216 | MS.gene23190:CDS | 20.0% |
| ! | ATCATGAAGCTAAATAGAAA+AGG | + | chr7.2:51815648-51815667 | None:intergenic | 25.0% |
| ! | GTTAAAGATTTGAAAGACAT+TGG | - | chr7.2:51816499-51816518 | MS.gene23190:intron | 25.0% |
| ! | TATGAAAAGAGCTAAATTTC+AGG | + | chr7.2:51816576-51816595 | None:intergenic | 25.0% |
| ! | TCAATTGATCATTTGAATAG+CGG | + | chr7.2:51816747-51816766 | None:intergenic | 25.0% |
| !! | GAAGATAGATAATTTAGTTC+AGG | - | chr7.2:51816005-51816024 | MS.gene23190:intron | 25.0% |
| AGAAGCTCAATGTAATAGTA+GGG | - | chr7.2:51815555-51815574 | MS.gene23190:intron | 30.0% | |
| ATCATGAAGATATGAGTGAA+AGG | - | chr7.2:51815713-51815732 | MS.gene23190:intron | 30.0% | |
| TGACATGCATACATGTTATT+GGG | - | chr7.2:51817005-51817024 | MS.gene23190:intron | 30.0% | |
| TGTAGGTTTCTATTCACAAA+TGG | - | chr7.2:51817063-51817082 | MS.gene23190:intron | 30.0% | |
| TTGACATGCATACATGTTAT+TGG | - | chr7.2:51817004-51817023 | MS.gene23190:intron | 30.0% | |
| !!! | AAATTTTGGGATGATACATC+TGG | - | chr7.2:51816211-51816230 | MS.gene23190:CDS | 30.0% |
| !!! | AGGTATGCTTTTGTTTTACT+TGG | - | chr7.2:51816362-51816381 | MS.gene23190:intron | 30.0% |
| ACAGAGAAAAATGTAAGCCT+CGG | + | chr7.2:51816266-51816285 | None:intergenic | 35.0% | |
| AGCTGGAGAGATACATTTAT+TGG | - | chr7.2:51815973-51815992 | MS.gene23190:intron | 35.0% | |
| AGGTTTCTATTCACAAATGG+CGG | - | chr7.2:51817066-51817085 | MS.gene23190:intron | 35.0% | |
| ATAGGAGATTATGTGACGAT+GGG | - | chr7.2:51816298-51816317 | MS.gene23190:intron | 35.0% | |
| ATGCATACATGTTATTGGGT+TGG | - | chr7.2:51817009-51817028 | MS.gene23190:intron | 35.0% | |
| ATTGGCCACAATGTAGTTAT+TGG | - | chr7.2:51816105-51816124 | MS.gene23190:intron | 35.0% | |
| CAGAAGCTCAATGTAATAGT+AGG | - | chr7.2:51815554-51815573 | MS.gene23190:intron | 35.0% | |
| CTGGAGAGATACATTTATTG+GGG | - | chr7.2:51815975-51815994 | MS.gene23190:intron | 35.0% | |
| GCTGGAGAGATACATTTATT+GGG | - | chr7.2:51815974-51815993 | MS.gene23190:intron | 35.0% | |
| TACTAAGTGCATGTTTGCTT+TGG | - | chr7.2:51816672-51816691 | MS.gene23190:intron | 35.0% | |
| TAGAAACCTACAAAGCAACA+AGG | + | chr7.2:51817055-51817074 | None:intergenic | 35.0% | |
| TAGAACTAAAGTTATTGCCG+AGG | - | chr7.2:51816246-51816265 | MS.gene23190:intron | 35.0% | |
| TCTTCCCAATAACTACATTG+TGG | + | chr7.2:51816113-51816132 | None:intergenic | 35.0% | |
| TGCATACATGTTATTGGGTT+GGG | - | chr7.2:51817010-51817029 | MS.gene23190:intron | 35.0% | |
| TGTAATAGTAGGGAACAATG+TGG | - | chr7.2:51815565-51815584 | MS.gene23190:intron | 35.0% | |
| TGTTTGTAAATTGGGTGCTT+GGG | - | chr7.2:51816805-51816824 | MS.gene23190:intron | 35.0% | |
| TTGGCCACAATGTAGTTATT+GGG | - | chr7.2:51816106-51816125 | MS.gene23190:intron | 35.0% | |
| ! | AGTTTTCATCTTCACACTCA+CGG | - | chr7.2:51816617-51816636 | MS.gene23190:intron | 35.0% |
| ! | TGCAAATACATGCATTGACA+GGG | - | chr7.2:51815595-51815614 | MS.gene23190:intron | 35.0% |
| !! | TCATGTATCGATTGCATCAA+AGG | - | chr7.2:51816342-51816361 | MS.gene23190:intron | 35.0% |
| !! | TTCTGATTAGTTCTGCAGAT+TGG | - | chr7.2:51816087-51816106 | MS.gene23190:intron | 35.0% |
| !!! | TTGTTTTACTTGGTGCATTG+AGG | - | chr7.2:51816372-51816391 | MS.gene23190:CDS | 35.0% |
| AGTTAGAAACTCTGATGAGC+TGG | + | chr7.2:51815811-51815830 | None:intergenic | 40.0% | |
| ATCACAGAACCTGGAGATTA+TGG | - | chr7.2:51816901-51816920 | MS.gene23190:intron | 40.0% | |
| ATGATAAAGAAGCCACAGGT+TGG | - | chr7.2:51815414-51815433 | MS.gene23190:CDS | 40.0% | |
| CAAGACAAATTACCAACCTG+TGG | + | chr7.2:51815429-51815448 | None:intergenic | 40.0% | |
| CATAGGAGATTATGTGACGA+TGG | - | chr7.2:51816297-51816316 | MS.gene23190:intron | 40.0% | |
| CGGTGAGTATGACAAAATCA+CGG | + | chr7.2:51816727-51816746 | None:intergenic | 40.0% | |
| CTCTGTTATGTGTTCAGCAT+AGG | - | chr7.2:51816280-51816299 | MS.gene23190:intron | 40.0% | |
| CTGTTTGTAAATTGGGTGCT+TGG | - | chr7.2:51816804-51816823 | MS.gene23190:intron | 40.0% | |
| GACTAGTAGATCATTACAGC+AGG | + | chr7.2:51816934-51816953 | None:intergenic | 40.0% | |
| GTAGGGAACAATGTGGAAAT+TGG | - | chr7.2:51815572-51815591 | MS.gene23190:intron | 40.0% | |
| GTTTGTAAATTGGGTGCTTG+GGG | - | chr7.2:51816806-51816825 | MS.gene23190:intron | 40.0% | |
| TAAGTGCATGTTTGCTTTGG+TGG | - | chr7.2:51816675-51816694 | MS.gene23190:intron | 40.0% | |
| TGAGTATGACAAAATCACGG+TGG | + | chr7.2:51816724-51816743 | None:intergenic | 40.0% | |
| ! | CAAGGAAGCTGGTTTATGAA+TGG | + | chr7.2:51817037-51817056 | None:intergenic | 40.0% |
| ! | GCAAATACATGCATTGACAG+GGG | - | chr7.2:51815596-51815615 | MS.gene23190:intron | 40.0% |
| ! | GTGCAAATACATGCATTGAC+AGG | - | chr7.2:51815594-51815613 | MS.gene23190:intron | 40.0% |
| ! | TGCGTTAAGTTGTGTAACCA+AGG | - | chr7.2:51816876-51816895 | MS.gene23190:intron | 40.0% |
| !! | TTTACTTGGTGCATTGAGGA+TGG | - | chr7.2:51816376-51816395 | MS.gene23190:CDS | 40.0% |
| AAACTCTGATGAGCTGGCAT+AGG | + | chr7.2:51815805-51815824 | None:intergenic | 45.0% | |
| AATGTATCTCTCCAGCTGCA+TGG | + | chr7.2:51815970-51815989 | None:intergenic | 45.0% | |
| ACAGAACCTGGAGATTATGG+TGG | - | chr7.2:51816904-51816923 | MS.gene23190:intron | 45.0% | |
| ATTATGTGACGATGGGAGGA+AGG | - | chr7.2:51816305-51816324 | MS.gene23190:intron | 45.0% | |
| CACAACCTGTAATTCCTTGC+TGG | - | chr7.2:51816646-51816665 | MS.gene23190:intron | 45.0% | |
| CTACAAAGCAACAAGGAAGC+TGG | + | chr7.2:51817048-51817067 | None:intergenic | 45.0% | |
| GCATGCTATGTGGACAAGTT+GGG | - | chr7.2:51816136-51816155 | MS.gene23190:intron | 45.0% | |
| GGGAAGAATTGCATGCTATG+TGG | - | chr7.2:51816126-51816145 | MS.gene23190:intron | 45.0% | |
| TACAGCCAGCAAGGAATTAC+AGG | + | chr7.2:51816654-51816673 | None:intergenic | 45.0% | |
| TCCTCTAACTGCAAAACTGC+TGG | + | chr7.2:51817102-51817121 | None:intergenic | 45.0% | |
| TGCATGCTATGTGGACAAGT+TGG | - | chr7.2:51816135-51816154 | MS.gene23190:intron | 45.0% | |
| TTATGTGACGATGGGAGGAA+GGG | - | chr7.2:51816306-51816325 | MS.gene23190:intron | 45.0% | |
| !! | CAGCTTCCTTGTTGCTTTGT+AGG | - | chr7.2:51817046-51817065 | MS.gene23190:intron | 45.0% |
| ACCAAGGACATCACAGAACC+TGG | - | chr7.2:51816892-51816911 | MS.gene23190:intron | 50.0% | |
| GGAAAGCCACCATAATCTCC+AGG | + | chr7.2:51816913-51816932 | None:intergenic | 50.0% | |
| GGAGATTATGTGACGATGGG+AGG | - | chr7.2:51816301-51816320 | MS.gene23190:intron | 50.0% | |
| GGTGAGTTCAGCAGAATCAC+TGG | - | chr7.2:51816696-51816715 | MS.gene23190:intron | 50.0% | |
| TCCAGGTTCTGTGATGTCCT+TGG | + | chr7.2:51816896-51816915 | None:intergenic | 50.0% | |
| TCTGATTGCAACGTGCTTGC+AGG | - | chr7.2:51816843-51816862 | MS.gene23190:intron | 50.0% | |
| TGCACTTAGTACAGCCAGCA+AGG | + | chr7.2:51816663-51816682 | None:intergenic | 50.0% | |
| ! | ATACATGCATTGACAGGGGC+AGG | - | chr7.2:51815600-51815619 | MS.gene23190:intron | 50.0% |
| ! | CTTGGTGCATTGAGGATGGT+TGG | - | chr7.2:51816380-51816399 | MS.gene23190:CDS | 50.0% |
| ! | GCCAGCAGTTTTGCAGTTAG+AGG | - | chr7.2:51817098-51817117 | MS.gene23190:intron | 50.0% |
| ! | TGTGGACAAGTTGGGATTGC+AGG | - | chr7.2:51816144-51816163 | MS.gene23190:intron | 50.0% |
| TCACTCATTGGCCATGCAGC+TGG | - | chr7.2:51815956-51815975 | MS.gene23190:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 51815414 | 51817127 | 51815414 | ID=MS.gene23190 |
| chr7.2 | mRNA | 51815414 | 51817127 | 51815414 | ID=MS.gene23190.t1;Parent=MS.gene23190 |
| chr7.2 | exon | 51817110 | 51817127 | 51817110 | ID=MS.gene23190.t1.exon1;Parent=MS.gene23190.t1 |
| chr7.2 | CDS | 51817110 | 51817127 | 51817110 | ID=cds.MS.gene23190.t1;Parent=MS.gene23190.t1 |
| chr7.2 | exon | 51816920 | 51816984 | 51816920 | ID=MS.gene23190.t1.exon2;Parent=MS.gene23190.t1 |
| chr7.2 | CDS | 51816920 | 51816984 | 51816920 | ID=cds.MS.gene23190.t1;Parent=MS.gene23190.t1 |
| chr7.2 | exon | 51816515 | 51816566 | 51816515 | ID=MS.gene23190.t1.exon3;Parent=MS.gene23190.t1 |
| chr7.2 | CDS | 51816515 | 51816566 | 51816515 | ID=cds.MS.gene23190.t1;Parent=MS.gene23190.t1 |
| chr7.2 | exon | 51816366 | 51816436 | 51816366 | ID=MS.gene23190.t1.exon4;Parent=MS.gene23190.t1 |
| chr7.2 | CDS | 51816366 | 51816436 | 51816366 | ID=cds.MS.gene23190.t1;Parent=MS.gene23190.t1 |
| chr7.2 | exon | 51816178 | 51816244 | 51816178 | ID=MS.gene23190.t1.exon5;Parent=MS.gene23190.t1 |
| chr7.2 | CDS | 51816178 | 51816244 | 51816178 | ID=cds.MS.gene23190.t1;Parent=MS.gene23190.t1 |
| chr7.2 | exon | 51815605 | 51815676 | 51815605 | ID=MS.gene23190.t1.exon6;Parent=MS.gene23190.t1 |
| chr7.2 | CDS | 51815605 | 51815676 | 51815605 | ID=cds.MS.gene23190.t1;Parent=MS.gene23190.t1 |
| chr7.2 | exon | 51815414 | 51815473 | 51815414 | ID=MS.gene23190.t1.exon7;Parent=MS.gene23190.t1 |
| chr7.2 | CDS | 51815414 | 51815473 | 51815414 | ID=cds.MS.gene23190.t1;Parent=MS.gene23190.t1 |
| Gene Sequence |
| Protein sequence |
