AlfalfaGEDB | MS.gene25151

M. sativa cultivar XinJiangDaYe / MS.gene25151

KEGG: -
GO: -
PFAM: PF07011.14

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25151.t1	XP_024629113.1	98.2	114	2	0	1	114	1	114	5.20E-50	206.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25151.t1	Q570U6	70.8	113	33	0	1	113	1	113	2.1e-36	152.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25151.t1	C6ZKI2	98.2	114	2	0	1	114	1	114	3.7e-50	206.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene25151	0.820231	7.65E-53	-1.69E-46
MS.gene049159	MS.gene25151	0.820194	7.80E-53	-1.69E-46
MS.gene049254	MS.gene25151	0.881894	1.64E-70	-1.69E-46
MS.gene049272	MS.gene25151	0.826631	2.44E-54	-1.69E-46
MS.gene049378	MS.gene25151	0.823756	1.17E-53	-1.69E-46
MS.gene049404	MS.gene25151	0.815903	7.28E-52	-1.69E-46
MS.gene049419	MS.gene25151	-0.809914	1.49E-50	-1.69E-46
MS.gene049435	MS.gene25151	0.837036	6.58E-57	-1.69E-46
MS.gene049452	MS.gene25151	0.833059	6.63E-56	-1.69E-46
MS.gene049499	MS.gene25151	0.800131	1.66E-48	-1.69E-46

Showing 1 to 10 of 198 entries

Previous1 2 3 4 5…20Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25151.t1	MTR_8g020200	98.246	114	2	0	1	114	1	114	5.25e-76	220
MS.gene25151.t1	MTR_2g041310	71.053	114	33	0	1	114	1	114	6.06e-55	167
MS.gene25151.t1	MTR_4g125590	70.796	113	32	1	1	112	1	113	9.38e-54	164
MS.gene25151.t1	MTR_3g070490	46.250	80	43	0	6	85	36	115	1.41e-21	83.2

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25151.t1	AT1G17455	70.796	113	33	0	1	113	1	113	4.47e-53	162
MS.gene25151.t1	AT1G17455	70.796	113	33	0	1	113	1	113	4.47e-53	162
MS.gene25151.t1	AT1G72630	66.667	114	37	1	1	113	5	118	5.50e-49	152
MS.gene25151.t1	AT2G06255	60.870	115	38	3	1	114	1	109	4.65e-42	134
MS.gene25151.t1	AT2G29950	52.113	71	34	0	16	86	34	104	1.36e-18	75.5
MS.gene25151.t1	AT2G40080	47.143	70	37	0	16	85	22	91	1.39e-18	75.1

Showing 1 to 6 of 6 entries

Previous1Next

Find 15 sgRNAs with CRISPR-Local

Find 17 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAAGGTGATATATT+TGG	0.290272	8.4:+73221381	None:intergenic
AACTTGATCTAATTCTCTTC+TGG	0.282924	8.4:-73221704	None:intergenic
ACATTTCTACTCAGATTATC+AGG	0.344511	8.4:-73221540	None:intergenic
AGACGAAGCTTCCCGCGACT+TGG	0.462270	8.4:-73221637	None:intergenic
AGTGGAACTCTCAAATCTGA+TGG	0.488717	8.4:+73221672	MS.gene25151:CDS
CGAGTTCGTTTACCAAGTCG+CGG	0.624955	8.4:+73221625	MS.gene25151:CDS
GAATAGTAATATCAGAAGAG+TGG	0.647250	8.4:+73221581	MS.gene25151:CDS
GAATCCTAGACTCATGATTT+TGG	0.224769	8.4:-73221518	None:intergenic
GAGTTCGTTTACCAAGTCGC+GGG	0.624410	8.4:+73221626	MS.gene25151:CDS
GATAATCTGAGTAGAAATGT+TGG	0.559396	8.4:+73221543	MS.gene25151:CDS

Showing 1 to 10 of 15 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTTGATCTAATTCTCTTC+TGG	-	chr8.4:73221707-73221726	None:intergenic	30.0%
ACATTTCTACTCAGATTATC+AGG	-	chr8.4:73221543-73221562	None:intergenic	30.0%
GAATAGTAATATCAGAAGAG+TGG	+	chr8.4:73221581-73221600	MS.gene25151:CDS	30.0%
GATAATCTGAGTAGAAATGT+TGG	+	chr8.4:73221543-73221562	MS.gene25151:CDS	30.0%
GGTGATATATTTGGAGAATT+AGG	+	chr8.4:73221390-73221409	MS.gene25151:CDS	30.0%
TAAACCAAAATCATGAGTCT+AGG	+	chr8.4:73221514-73221533	MS.gene25151:CDS	30.0%
TTATCTGGTTGATTAAAAGC+CGG	-	chr8.4:73221497-73221516	None:intergenic	30.0%
AGTGGAACTCTCAAATCTGA+TGG	+	chr8.4:73221672-73221691	MS.gene25151:CDS	40.0%
TCGTCTGAAGGAGATTCAAG+TGG	+	chr8.4:73221654-73221673	MS.gene25151:CDS	45.0%
CGAGTTCGTTTACCAAGTCG+CGG	+	chr8.4:73221625-73221644	MS.gene25151:CDS	50.0%

Showing 1 to 10 of 17 entries

Previous1 2Next

Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	73221384	73221728	73221384	ID=MS.gene25151
chr8.4	mRNA	73221384	73221728	73221384	ID=MS.gene25151.t1;Parent=MS.gene25151
chr8.4	exon	73221384	73221728	73221384	ID=MS.gene25151.t1.exon1;Parent=MS.gene25151.t1
chr8.4	CDS	73221384	73221728	73221384	ID=cds.MS.gene25151.t1;Parent=MS.gene25151.t1

Gene Sequence	>MS.gene25151 ATGGAAGGTGATATATTTGGAGAATTAGGTGATACAAGTCAAGTAGATAGTAGAGTTTTACAGGTATTTCAGAAGAGCTTAGTACAAGCACAAGATATTTTGAATCAAAACCGGCTTTTAATCAACCAGATAAACCAAAATCATGAGTCTAGGATTCCTGATAATCTGAGTAGAAATGTTGGTTTGATTAAAGAGCTGAATAGTAATATCAGAAGAGTGGTTGATCTTTATGCTGATCTTTCGAGTTCGTTTACCAAGTCGCGGGAAGCTTCGTCTGAAGGAGATTCAAGTGGAACTCTCAAATCTGATGGAAAAGTTAACCAGAAGAGAATTAGATCAAGTTAA
Protein sequence	>MS.gene25151.t1 MEGDIFGELGDTSQVDSRVLQVFQKSLVQAQDILNQNRLLINQINQNHESRIPDNLSRNVGLIKELNSNIRRVVDLYADLSSSFTKSREASSEGDSSGTLKSDGKVNQKRIRSS