AlfalfaGEDB | MS.gene54858

M. sativa cultivar XinJiangDaYe / MS.gene54858

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54858.t1	KEH39262.1	91.2	331	29	0	1	331	34	364	7.00E-164	586.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54858.t1	A0A072VM96	91.2	331	29	0	1	331	35	365	5.0e-164	586.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene54858	0.817017	4.10E-52	-1.69E-46
MS.gene050156	MS.gene54858	0.843906	1.05E-58	-1.69E-46
MS.gene050750	MS.gene54858	0.824278	8.80E-54	-1.69E-46
MS.gene050953	MS.gene54858	0.812033	5.20E-51	-1.69E-46
MS.gene051147	MS.gene54858	0.811332	7.38E-51	-1.69E-46
MS.gene051190	MS.gene54858	0.81244	4.24E-51	-1.69E-46
MS.gene051924	MS.gene54858	-0.830982	2.16E-55	-1.69E-46
MS.gene051926	MS.gene54858	-0.836326	9.99E-57	-1.69E-46
MS.gene052190	MS.gene54858	0.841558	4.42E-58	-1.69E-46
MS.gene052333	MS.gene54858	0.86795	9.38E-66	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54858.t1	MTR_2g091180	91.239	331	29	0	1	331	1	331	0.0	625
MS.gene54858.t1	MTR_2g091180	91.239	331	29	0	1	331	34	364	0.0	623
MS.gene54858.t1	MTR_2g091180	91.239	331	29	0	1	331	35	365	0.0	623
MS.gene54858.t1	MTR_2g091180	89.124	331	29	1	1	331	35	358	0.0	604
MS.gene54858.t1	MTR_2g091180	88.839	224	25	0	1	224	35	258	1.03e-143	407
MS.gene54858.t1	MTR_4g079720	41.854	356	163	7	1	327	42	382	2.71e-70	224
MS.gene54858.t1	MTR_4g079720	41.292	356	159	7	1	327	42	376	2.55e-69	221
MS.gene54858.t1	MTR_5g052190	78.409	88	19	0	111	198	570	657	4.58e-35	135

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 55 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGCGGTATTCCCGTAT+TGG	0.446464	2.1:+9752714	MS.gene54858:CDS
AAAGTTCTACTCAGAAGTCA+TGG	0.568093	2.1:+9752225	MS.gene54858:CDS
AAATGGAAATGGTGATTGCG+TGG	0.672357	2.1:+9753588	MS.gene54858:CDS
AACGTTGAAATGACTTCTTA+GGG	0.471471	2.1:-9752321	None:intergenic
AACTAACTGAAGTTCGTCTC+TGG	0.466709	2.1:-9753363	None:intergenic
AAGAGCTTGCATTATTGCAT+GGG	0.541758	2.1:+9753557	MS.gene54858:CDS
ACAATCGCTGTGTCTCATCC+AGG	0.556728	2.1:+9752951	MS.gene54858:CDS
ACAATCTGCTACAGCTGCAA+AGG	0.574614	2.1:-9752659	None:intergenic
ACAGGGGTAGCACATGAAGA+TGG	0.556868	2.1:-9752262	None:intergenic
AGACAACGACTTGAAGCTCG+AGG	0.652614	2.1:+9753322	MS.gene54858:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACGTTGAAATGACTTCTTA+GGG	-	chr2.1:9752324-9752343	None:intergenic	30.0%
ACTTCGTCTAATTAAGAACA+TGG	-	chr2.1:9753120-9753139	None:intergenic	30.0%
AGAAGTTCTTGCTTAGAATT+TGG	+	chr2.1:9753074-9753093	MS.gene54858:intron	30.0%
ATGGTTTCATTATTACCTCA+TGG	+	chr2.1:9752827-9752846	MS.gene54858:intron	30.0%
ATGTTCTTAATTAGACGAAG+TGG	+	chr2.1:9753119-9753138	MS.gene54858:intron	30.0%
ATTACCAACAATAAACCATG+AGG	-	chr2.1:9752845-9752864	None:intergenic	30.0%
ATTACCTCATGGTTTATTGT+TGG	+	chr2.1:9752838-9752857	MS.gene54858:intron	30.0%
GCATGATTTGAATTAATACC+TGG	-	chr2.1:9752972-9752991	None:intergenic	30.0%
TCAAGTATGAATCATGATTC+TGG	+	chr2.1:9752391-9752410	MS.gene54858:CDS	30.0%
TCTAAGCAAGAACTTCTAAA+TGG	-	chr2.1:9753071-9753090	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	9752199	9753681	9752199	ID=MS.gene54858
chr2.1	mRNA	9752199	9753681	9752199	ID=MS.gene54858.t1;Parent=MS.gene54858
chr2.1	exon	9752199	9752799	9752199	ID=MS.gene54858.t1.exon1;Parent=MS.gene54858.t1
chr2.1	CDS	9752199	9752799	9752199	ID=cds.MS.gene54858.t1;Parent=MS.gene54858.t1
chr2.1	exon	9752904	9752972	9752904	ID=MS.gene54858.t1.exon2;Parent=MS.gene54858.t1
chr2.1	CDS	9752904	9752972	9752904	ID=cds.MS.gene54858.t1;Parent=MS.gene54858.t1
chr2.1	exon	9753276	9753418	9753276	ID=MS.gene54858.t1.exon3;Parent=MS.gene54858.t1
chr2.1	CDS	9753276	9753418	9753276	ID=cds.MS.gene54858.t1;Parent=MS.gene54858.t1
chr2.1	exon	9753499	9753681	9753499	ID=MS.gene54858.t1.exon4;Parent=MS.gene54858.t1
chr2.1	CDS	9753499	9753681	9753499	ID=cds.MS.gene54858.t1;Parent=MS.gene54858.t1

Gene Sequence

>MS.gene54858

ATGCAGATTGTCGGAGAAAGTGTTGGAAAGTTCTACTCAGAAGTCATGGAAGATTTACTTCCTCCATCTTCATGTGCTACCCCTGTATTGCCTATAGGTCAATATGCTAATGCTACTGCTATCCCTAAGAAGTCATTTCAACGTTCCAAGAAAAGAATGGTAAAGGCTAATACCAAGCGATCAACCGAGCACTCAAGTATGAATCATGATTCTGGCAATTCTATCAAAAAGAATACTTTTATTTGGCGTGCAAAACAACATGTTCGGAGTGCAGATATTAAATTGAATATTAGCAGTGATGAAAATCTACAAAATACGAAGATTCCTGCACCGAAGACAGCCAGTGAAGTCGCTCGATCAAAAACAGATGGATGCGGTTCATCACAATCATGTGAACTCTCCAATGTAAATGAAAATCATGAGGCTACTGTTTCAAAGACTGCTTCTGCAGAAGTAACAACCTTTGCAGCTGTAGCAGATTGTTGCAATGAAACTGAAAAAGCAAGTACTGAACAAAACCGCGGTATTCCCGTATTGGTTGATTCAGCTGAAGAGAAAAATATGAGTTCTATCTCAAGTGACATACTTGAAGATGCACATGGTTTGTATCTTTGTGTCTCTTGGACATATGGTTTCATTATTACCTCATGGTTTATTGTTGGTAATTTTTTGTTTCTGATAATCGTTGCATAACTTTTCTTGTAGGGTTTTCTATGGTCAAAGCTATGCAGCCTGAAGATTGTTCTCATAGTACAATCGCTGTGTCTCATCCAGGTATTAATTCAAATCATGCTGAAGTACTAATTGAATTTAGGTAACATTTTTCAAATCAATATGAAGTGCTTTCTCAATTTAAGTATTATAACCCACCATTTAGAAGTTCTTGCTTAGAATTTGGAGAAAATGTTTTCTGTACTGCCATGTTCTTAATTAGACGAAGTGGAATCTGTTTTTTTGTTAAACAACTAAACTGTTTTTAGTATAATATGCAGATATAAACTTTAGTTTATTCATGCCCCTAAAATTGTCTCAATACACATAACAATATTCATTTTAACCCTGATTGGAATGTTATAGCAAATATTGATGCTTCTATAGACCAAGATGATAAAACCACGAGACAAGACAACGACTTGAAGCTCGAGGAAGTTTGTGTCATGGTTACCAGAGACGAACTTCAGTTAGTTCCCAAGGCAACGGTTAATACAAAGAAGAGAGAGGTAAACACTCATTCCCCTTTTCTATTTTTTATGCACGTTGTTAAACTTAAAGTAATTTTTTCTTTATTTCTCGTTTGAAGAAAAAGTGGCTGCAACCCTTTTCTTTGTATAAGAAATCTACAAGGAAGCAAGAGTATGAAGAGCTTGCATTATTGCATGGGAACAATGAAAATGGAAATGGTGATTGCGTGGAGAGTTTATGTCCAACTTCGCAGGATGATGTCTCTGAACCCGAATGGGAACTTCTCTGTATACCACGGTGA

Protein sequence

>MS.gene54858.t1

MQIVGESVGKFYSEVMEDLLPPSSCATPVLPIGQYANATAIPKKSFQRSKKRMVKANTKRSTEHSSMNHDSGNSIKKNTFIWRAKQHVRSADIKLNISSDENLQNTKIPAPKTASEVARSKTDGCGSSQSCELSNVNENHEATVSKTASAEVTTFAAVADCCNETEKASTEQNRGIPVLVDSAEEKNMSSISSDILEDAHGFSMVKAMQPEDCSHSTIAVSHPANIDASIDQDDKTTRQDNDLKLEEVCVMVTRDELQLVPKATVNTKKREKKWLQPFSLYKKSTRKQEYEELALLHGNNENGNGDCVESLCPTSQDDVSEPEWELLCIPR