AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06292

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06292.t1 MTR_3g098470 99.678 311 1 0 1 311 1 311 0.0 642
MS.gene06292.t1 MTR_8g096060 80.511 313 56 2 1 311 1 310 0.0 521
MS.gene06292.t1 MTR_1g031180 77.926 299 66 0 13 311 18 316 2.53e-180 500
MS.gene06292.t1 MTR_4g087460 41.695 295 154 8 29 311 16 304 3.61e-73 228
MS.gene06292.t1 MTR_8g032010 41.077 297 138 5 33 303 5 290 2.69e-69 218
MS.gene06292.t1 MTR_8g032000 41.017 295 137 5 37 305 9 292 8.94e-69 216
MS.gene06292.t1 MTR_8g031960 40.667 300 140 6 36 309 9 296 1.31e-67 213
MS.gene06292.t1 MTR_7g076660 41.522 289 144 6 37 311 9 286 1.33e-67 213
MS.gene06292.t1 MTR_7g076660 41.522 289 144 6 37 311 10 287 1.61e-67 213
MS.gene06292.t1 MTR_8g031980 39.604 303 145 6 34 310 6 296 2.97e-67 212
MS.gene06292.t1 MTR_8g031990 39.344 305 148 6 33 311 5 298 7.27e-67 211
MS.gene06292.t1 MTR_7g076655 41.522 289 144 6 37 311 9 286 6.38e-66 208
MS.gene06292.t1 MTR_8g032020 40.397 302 142 6 37 311 10 300 7.79e-66 209
MS.gene06292.t1 MTR_5g062280 40.132 304 146 6 32 311 4 295 1.95e-64 205
MS.gene06292.t1 MTR_8g031910 41.724 290 143 6 32 306 4 282 1.04e-62 200
MS.gene06292.t1 MTR_3g079320 38.079 302 148 5 31 303 7 298 1.13e-61 198
MS.gene06292.t1 MTR_8g031940 39.456 294 140 6 37 303 9 291 4.59e-61 196
MS.gene06292.t1 MTR_8g031630 38.538 301 147 9 37 311 9 297 5.44e-61 196
MS.gene06292.t1 MTR_8g031900 37.162 296 154 5 37 311 9 293 6.69e-61 196
MS.gene06292.t1 MTR_8g031610 38.667 300 147 8 37 311 7 294 8.82e-61 196
MS.gene06292.t1 MTR_8g031650 38.333 300 147 9 38 311 104 391 4.69e-59 194
MS.gene06292.t1 MTR_8g031650 39.669 121 62 4 177 292 2 116 5.73e-16 78.2
MS.gene06292.t1 MTR_7g076660 40.074 272 138 6 54 311 2 262 7.27e-59 189
MS.gene06292.t1 MTR_8g031600 38.614 303 149 7 35 311 7 298 5.38e-58 189
MS.gene06292.t1 MTR_8g031650 38.333 300 147 9 38 311 270 557 1.58e-57 194
MS.gene06292.t1 MTR_8g031650 39.298 285 133 9 37 292 9 282 6.31e-55 187
MS.gene06292.t1 MTR_7g076665 37.919 298 151 5 37 311 9 295 2.42e-56 184
MS.gene06292.t1 MTR_7g106800 37.234 282 128 7 37 311 11 250 2.11e-49 166
MS.gene06292.t1 MTR_8g031850 33.453 278 151 4 37 311 9 255 9.37e-47 158
MS.gene06292.t1 MTR_5g083430 37.245 196 111 4 116 311 1 184 3.29e-37 131
MS.gene06292.t1 MTR_8g032030 42.012 169 70 3 34 175 6 173 4.53e-35 127
MS.gene06292.t1 MTR_4g105310 29.252 294 150 11 37 308 51 308 1.71e-16 79.3
MS.gene06292.t1 MTR_8g099995 27.907 301 147 14 37 308 38 297 2.62e-14 72.8
MS.gene06292.t1 MTR_8g098415 28.669 293 146 13 37 305 32 285 2.13e-13 70.1
MS.gene06292.t1 MTR_8g098415 28.669 293 146 13 37 305 32 285 2.73e-13 69.7
MS.gene06292.t1 MTR_4g105310 29.457 258 133 9 37 287 51 266 5.36e-13 68.2
MS.gene06292.t1 MTR_3g068070 34.028 144 92 3 29 170 12 154 1.36e-12 67.0
MS.gene06292.t1 MTR_1g100305 28.425 292 148 13 37 305 32 285 1.65e-11 64.3
MS.gene06292.t1 MTR_8g442750 29.932 147 96 2 33 172 15 161 5.59e-11 62.8
MS.gene06292.t1 MTR_7g071680 31.034 174 110 4 10 177 6 175 6.53e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06292.t1 AT5G51030 69.968 313 92 1 1 311 2 314 4.85e-173 482
MS.gene06292.t1 AT5G61830 67.089 316 99 3 1 311 1 316 8.45e-158 443
MS.gene06292.t1 AT5G61830 67.089 316 99 3 1 311 1 316 8.45e-158 443
MS.gene06292.t1 AT3G59710 42.756 283 151 5 23 303 7 280 2.60e-77 238
MS.gene06292.t1 AT3G59710 41.554 296 161 6 11 303 23 309 4.75e-76 236
MS.gene06292.t1 AT3G59710 42.199 282 152 5 24 303 18 290 1.14e-74 231
MS.gene06292.t1 AT3G61220 41.414 297 140 6 37 310 9 294 9.61e-67 211
MS.gene06292.t1 AT3G61220 41.414 297 140 6 37 310 16 301 1.41e-66 211
MS.gene06292.t1 AT3G61220 41.414 297 140 6 37 310 40 325 3.11e-66 211
MS.gene06292.t1 AT2G24190 40.741 297 142 6 37 310 9 294 1.94e-65 207
MS.gene06292.t1 AT2G24190 40.741 297 142 6 37 310 14 299 2.50e-65 207
MS.gene06292.t1 AT1G01800 39.535 301 146 7 36 311 6 295 1.56e-64 205
MS.gene06292.t1 AT1G01800 39.891 183 99 3 129 311 89 260 2.07e-37 134
MS.gene06292.t1 AT4G23420 30.375 293 142 11 37 305 49 303 3.92e-16 78.2
MS.gene06292.t1 AT4G23420 30.375 293 142 11 37 305 32 286 8.24e-16 77.0
MS.gene06292.t1 AT4G23420 30.375 293 142 11 37 305 32 286 8.24e-16 77.0
MS.gene06292.t1 AT5G50130 30.180 222 126 7 25 221 27 244 1.87e-15 75.1
MS.gene06292.t1 AT5G50130 26.984 315 159 11 25 310 27 299 1.92e-15 76.3
MS.gene06292.t1 AT5G50130 30.317 221 126 7 25 221 27 243 2.83e-15 74.7
MS.gene06292.t1 AT2G37540 27.211 294 149 11 37 305 36 289 2.98e-15 75.5
MS.gene06292.t1 AT5G50130 30.180 222 126 7 25 221 27 244 3.11e-15 75.5
MS.gene06292.t1 AT5G50130 30.317 221 126 7 25 221 27 243 3.85e-15 75.1
MS.gene06292.t1 AT5G50130 27.575 301 147 11 39 310 8 266 1.61e-13 70.5
MS.gene06292.t1 AT5G50130 27.667 300 147 11 39 310 8 265 2.14e-13 70.1
MS.gene06292.t1 AT5G50130 31.250 208 114 7 39 221 8 211 2.91e-13 69.3
MS.gene06292.t1 AT5G50130 31.401 207 114 7 39 221 8 210 3.69e-13 68.9
MS.gene06292.t1 AT4G23420 31.064 235 133 10 37 248 32 260 1.72e-12 67.0
MS.gene06292.t1 AT4G23420 31.064 235 131 9 37 248 32 258 6.22e-12 65.1
MS.gene06292.t1 AT1G64590 27.703 296 154 12 37 308 37 296 1.98e-11 64.3
MS.gene06292.t1 AT4G20760 28.834 163 100 4 33 179 42 204 6.66e-11 62.4
MS.gene06292.t1 AT4G20760 28.834 163 100 4 33 179 62 224 6.99e-11 62.8
MS.gene06292.t1 AT4G23430 27.682 289 145 11 37 305 32 276 9.26e-11 62.4

Find 71 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATTGAAACAAATTATTA+TGG 0.185787 3.1:+78063271 MS.gene06292:CDS
TCACGTTTGGGTCGTCTAAA+TGG 0.278823 3.1:+78063370 MS.gene06292:CDS
GAAACTATTGCCGTGGTTAC+TGG 0.305445 3.1:+78062839 MS.gene06292:CDS
GAAGATGGAAGTTGGAAAAC+AGG 0.313685 3.1:+78064112 MS.gene06292:CDS
TGTTAATGTGAGTTCACGTT+TGG 0.336548 3.1:+78063357 MS.gene06292:CDS
ATATGGTGGTCTAGATATTC+TGG 0.337491 3.1:+78063063 MS.gene06292:CDS
GTTCCTGATCAAGAGATTAC+AGG 0.348866 3.1:+78064349 MS.gene06292:CDS
AACCTCTGGTGATCAGAATA+AGG 0.350644 3.1:-78062500 None:intergenic
GTTGAACAAGGGGCTGATAC+TGG 0.370186 3.1:+78064310 MS.gene06292:CDS
ACTGGTGGAAACCGAGGAAT+TGG 0.387985 3.1:+78062857 MS.gene06292:CDS
AAGGGGCTGATACTGGAGTT+TGG 0.401013 3.1:+78064317 MS.gene06292:CDS
TAATACTTACACAAGGTATA+TGG 0.404526 3.1:+78064183 MS.gene06292:CDS
AATAAGGAATGGTTCTCAAA+AGG 0.409576 3.1:-78062484 None:intergenic
GTATTGAAACAAATTATTAT+GGG 0.416441 3.1:+78063272 MS.gene06292:CDS
TACATTAATTGTTACTGTCC+TGG 0.416925 3.1:+78064244 MS.gene06292:CDS
AATAGAAAATGAGGAGTTGA+GGG 0.424375 3.1:+78064015 MS.gene06292:CDS
TGGGTGAAAACTGCTCTAAC+AGG 0.426724 3.1:+78064268 MS.gene06292:CDS
GGTCTTGCAAGAAGGTGGTT+TGG 0.437244 3.1:+78062967 MS.gene06292:CDS
AACCACGGCAATAGTTTCCT+TGG 0.438839 3.1:-78062834 None:intergenic
CATAGCTTCAATCATTCTCT+TGG 0.438910 3.1:-78063296 None:intergenic
TTTCTACAACAAGTAGAAGA+TGG 0.445780 3.1:+78064097 MS.gene06292:CDS
GTTAATGTGAGTTCACGTTT+GGG 0.446917 3.1:+78063358 MS.gene06292:CDS
TATTTATAGGTAAATAATGC+TGG 0.447071 3.1:+78063199 MS.gene06292:intron
TTCCCTGTAATCTCTTGATC+AGG 0.452132 3.1:-78064352 None:intergenic
ATAAGGAATGGTTCTCAAAA+GGG 0.455119 3.1:-78062483 None:intergenic
TTGATGAAGCCATCTGCTGC+TGG 0.468286 3.1:+78063325 MS.gene06292:CDS
GAATAGAAAATGAGGAGTTG+AGG 0.479987 3.1:+78064014 MS.gene06292:CDS
GAGTGGTTGAAAGAAGAATA+TGG 0.483507 3.1:+78063046 MS.gene06292:CDS
TGGCAAAGAAGCTCTCTGAT+AGG 0.485202 3.1:+78064203 MS.gene06292:CDS
AACAAGTAGAAGATGGAAGT+TGG 0.488568 3.1:+78064104 MS.gene06292:CDS
AAATCTCAAAACCAATTCCT+CGG 0.493628 3.1:-78062868 None:intergenic
ACTGCTCTAACAGGTTATGC+AGG 0.511056 3.1:+78064277 MS.gene06292:CDS
GAATAGTCAGTAAATGTTTG+AGG 0.522157 3.1:-78064142 None:intergenic
TATATAAAGGTGGTGGTCCA+AGG 0.527053 3.1:+78062817 MS.gene06292:intron
TAATTGTTACTGTCCTGGTT+GGG 0.532693 3.1:+78064249 MS.gene06292:CDS
TTAATTGTTACTGTCCTGGT+TGG 0.540425 3.1:+78064248 MS.gene06292:CDS
GTTACAGAGAATAGAAAATG+AGG 0.541317 3.1:+78064006 MS.gene06292:intron
TAATCTCTTGATCAGGAACA+AGG 0.543992 3.1:-78064345 None:intergenic
GCAGCAGATGGCTTCATCAA+AGG 0.554615 3.1:-78063322 None:intergenic
TCAAGACAACTTGCAGATCA+CGG 0.573554 3.1:+78062890 MS.gene06292:CDS
ATCAAGGTCTTGCAAGAAGG+TGG 0.574693 3.1:+78062962 MS.gene06292:CDS
TCAATCAAGGTCTTGCAAGA+AGG 0.574992 3.1:+78062959 MS.gene06292:CDS
TGCTGGTGTTAATTCCAACA+TGG 0.582462 3.1:+78063216 MS.gene06292:CDS
TTCCTGATCAAGAGATTACA+GGG 0.585333 3.1:+78064350 MS.gene06292:CDS
TTCCTTATTCTGATCACCAG+AGG 0.589818 3.1:+78062498 MS.gene06292:CDS
TGTCGGTGTTGAATCAATCA+AGG 0.590040 3.1:+78062946 MS.gene06292:CDS
GGAAGTGTTACAGTTGAACA+AGG 0.606460 3.1:+78064298 MS.gene06292:CDS
GATGGAAGTTGGAAAACAGG+AGG 0.608453 3.1:+78064115 MS.gene06292:CDS
ATGGAAGTTGGAAAACAGGA+GGG 0.612855 3.1:+78064116 MS.gene06292:CDS
GCTGGTGTTAATTCCAACAT+GGG 0.616735 3.1:+78063217 MS.gene06292:CDS
ACTATTGCCGTGGTTACTGG+TGG 0.620364 3.1:+78062842 MS.gene06292:CDS
ATGAAGCCATCTGCTGCTGG+TGG 0.625719 3.1:+78063328 MS.gene06292:CDS
ATATATCAAGTTGATGACAA+TGG 0.627304 3.1:-78062994 None:intergenic
ATACGACCACCAGCAGCAGA+TGG 0.629788 3.1:-78063334 None:intergenic
CTGGTGATCAGAATAAGGAA+TGG 0.631585 3.1:-78062495 None:intergenic
AAGTGTTACAGTTGAACAAG+GGG 0.633975 3.1:+78064300 MS.gene06292:CDS
GTCCAAGGAAACTATTGCCG+TGG 0.637747 3.1:+78062832 MS.gene06292:CDS
TGATGTGGAATCTCTTTCAG+AGG 0.642229 3.1:+78064048 MS.gene06292:CDS
GAGGGAGAAACTGAGTGATG+TGG 0.647729 3.1:+78064033 MS.gene06292:CDS
AAGCTCTCTGATAGGCCAGA+GGG 0.648245 3.1:+78064211 MS.gene06292:CDS
TCGGTTTCCACCAGTAACCA+CGG 0.650998 3.1:-78062849 None:intergenic
TGAGTTATCAGATCCCATGT+TGG 0.651992 3.1:-78063230 None:intergenic
ACATCAAGAGATGCTAGTGT+CGG 0.652928 3.1:+78062929 MS.gene06292:CDS
GTGGTTACTGGTGGAAACCG+AGG 0.666460 3.1:+78062851 MS.gene06292:CDS
GAAGTGTTACAGTTGAACAA+GGG 0.666525 3.1:+78064299 MS.gene06292:CDS
GAAGCTCTCTGATAGGCCAG+AGG 0.680052 3.1:+78064210 MS.gene06292:CDS
GAAGTTGGAAAACAGGAGGG+TGG 0.681062 3.1:+78064119 MS.gene06292:CDS
AATCTCTTGATCAGGAACAA+GGG 0.687916 3.1:-78064344 None:intergenic
CTGTCAATGAATTTGCTGAG+TGG 0.698650 3.1:+78063029 MS.gene06292:CDS
TTGCAGTTAATACTTACACA+AGG 0.716694 3.1:+78064176 MS.gene06292:CDS
TGGTTGAAAGAAGAATATGG+TGG 0.790075 3.1:+78063049 MS.gene06292:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAAATCATGATTTTAA+CGG - chr3.1:78062786-78062805 None:intergenic 10.0%
!! ATTGTTAAATACTATGATAT+GGG - chr3.1:78063814-78063833 None:intergenic 15.0%
!! GTATTGAAACAAATTATTAT+GGG + chr3.1:78063272-78063291 MS.gene06292:CDS 15.0%
!! TGTATTGAAACAAATTATTA+TGG + chr3.1:78063271-78063290 MS.gene06292:CDS 15.0%
!! TTGAACAATAAAAGAATTAT+AGG - chr3.1:78062548-78062567 None:intergenic 15.0%
!!! AATGACATTTTATAGTTTTA+GGG + chr3.1:78063859-78063878 MS.gene06292:intron 15.0%
!!! GCTATAATTTTGTTATTTAT+AGG + chr3.1:78063186-78063205 MS.gene06292:intron 15.0%
!!! TATAATTATCAATTGTTTCT+TGG + chr3.1:78063164-78063183 MS.gene06292:intron 15.0%
!! CATATCATAGTATTTAACAA+TGG + chr3.1:78063813-78063832 MS.gene06292:intron 20.0%
!! CATTGTTAAATACTATGATA+TGG - chr3.1:78063815-78063834 None:intergenic 20.0%
!! TATGTTACCTTTCTATATAA+AGG + chr3.1:78062804-78062823 MS.gene06292:intron 20.0%
!! TATTTATAGGTAAATAATGC+TGG + chr3.1:78063199-78063218 MS.gene06292:intron 20.0%
!!! GAATGACATTTTATAGTTTT+AGG + chr3.1:78063858-78063877 MS.gene06292:intron 20.0%
!!! TTAATTTGACTAAGAAACTT+AGG - chr3.1:78063723-78063742 None:intergenic 20.0%
!!! TTCGACTTAATTTTGTTTAT+AGG + chr3.1:78063123-78063142 MS.gene06292:intron 20.0%
! ATATATTTCCCAATTAGCAA+GGG + chr3.1:78063882-78063901 MS.gene06292:intron 25.0%
! ATGAGATACCTAAATTTCAT+AGG - chr3.1:78063634-78063653 None:intergenic 25.0%
! ATGTTCATATGATAATCAGA+AGG - chr3.1:78062596-78062615 None:intergenic 25.0%
! CATCATTGAAATTGTATGTT+TGG - chr3.1:78063917-78063936 None:intergenic 25.0%
! GACTGGATTGAAATATATAT+GGG - chr3.1:78062686-78062705 None:intergenic 25.0%
! TAATACTTACACAAGGTATA+TGG + chr3.1:78064183-78064202 MS.gene06292:CDS 25.0%
! TAATGAGCTTATATTGATGT+AGG + chr3.1:78063747-78063766 MS.gene06292:intron 25.0%
! TACATCAATATAAGCTCATT+AGG - chr3.1:78063748-78063767 None:intergenic 25.0%
! TATAAGATCAAATTAACCTC+TGG - chr3.1:78062517-78062536 None:intergenic 25.0%
! TATGAAATTTAGGTATCTCA+TGG + chr3.1:78063633-78063652 MS.gene06292:intron 25.0%
! TTAATCTGCCTATGAAATTT+AGG + chr3.1:78063623-78063642 MS.gene06292:intron 25.0%
!!! AAGTCGAATTTCACATTTTT+TGG - chr3.1:78063111-78063130 None:intergenic 25.0%
!!! ATATATCAAGTTGATGACAA+TGG - chr3.1:78062997-78063016 None:intergenic 25.0%
AAATCTCAAAACCAATTCCT+CGG - chr3.1:78062871-78062890 None:intergenic 30.0%
AATAAGGAATGGTTCTCAAA+AGG - chr3.1:78062487-78062506 None:intergenic 30.0%
AATAGAAAATGAGGAGTTGA+GGG + chr3.1:78064015-78064034 MS.gene06292:CDS 30.0%
ATAAGGAATGGTTCTCAAAA+GGG - chr3.1:78062486-78062505 None:intergenic 30.0%
GAATAGTCAGTAAATGTTTG+AGG - chr3.1:78064145-78064164 None:intergenic 30.0%
GATATATTTCCCAATTAGCA+AGG + chr3.1:78063881-78063900 MS.gene06292:intron 30.0%
GGACTGGATTGAAATATATA+TGG - chr3.1:78062687-78062706 None:intergenic 30.0%
GTTACAGAGAATAGAAAATG+AGG + chr3.1:78064006-78064025 MS.gene06292:intron 30.0%
GTTACCTTTCTATATAAAGG+TGG + chr3.1:78062807-78062826 MS.gene06292:intron 30.0%
TACATTAATTGTTACTGTCC+TGG + chr3.1:78064244-78064263 MS.gene06292:CDS 30.0%
TGTCATTCAAAATGATTCCT+CGG - chr3.1:78063846-78063865 None:intergenic 30.0%
TTCATAGGCAGATTAATCTA+CGG - chr3.1:78063619-78063638 None:intergenic 30.0%
TTGCAGTTAATACTTACACA+AGG + chr3.1:78064176-78064195 MS.gene06292:CDS 30.0%
TTTCTACAACAAGTAGAAGA+TGG + chr3.1:78064097-78064116 MS.gene06292:CDS 30.0%
AACAAGTAGAAGATGGAAGT+TGG + chr3.1:78064104-78064123 MS.gene06292:CDS 35.0%
AAGTGTTACAGTTGAACAAG+GGG + chr3.1:78064300-78064319 MS.gene06292:CDS 35.0%
AATACTATGATATGGGCATG+TGG - chr3.1:78063807-78063826 None:intergenic 35.0%
AATCTCTTGATCAGGAACAA+GGG - chr3.1:78064347-78064366 None:intergenic 35.0%
ACCACCACCTTTATATAGAA+AGG - chr3.1:78062814-78062833 None:intergenic 35.0%
ACCTTTCTATATAAAGGTGG+TGG + chr3.1:78062810-78062829 MS.gene06292:intron 35.0%
ATATGGTGGTCTAGATATTC+TGG + chr3.1:78063063-78063082 MS.gene06292:CDS 35.0%
CAAATAGTCCCTTGCTAATT+GGG - chr3.1:78063893-78063912 None:intergenic 35.0%
CATAGCTTCAATCATTCTCT+TGG - chr3.1:78063299-78063318 None:intergenic 35.0%
GAATAGAAAATGAGGAGTTG+AGG + chr3.1:78064014-78064033 MS.gene06292:CDS 35.0%
GAGTGGTTGAAAGAAGAATA+TGG + chr3.1:78063046-78063065 MS.gene06292:CDS 35.0%
GTTAATGTGAGTTCACGTTT+GGG + chr3.1:78063358-78063377 MS.gene06292:CDS 35.0%
TAATCTCTTGATCAGGAACA+AGG - chr3.1:78064348-78064367 None:intergenic 35.0%
TAATTGTTACTGTCCTGGTT+GGG + chr3.1:78064249-78064268 MS.gene06292:CDS 35.0%
TCAAATAGTCCCTTGCTAAT+TGG - chr3.1:78063894-78063913 None:intergenic 35.0%
TCACTAGTTGCAATTGTTCA+TGG - chr3.1:78063680-78063699 None:intergenic 35.0%
TGGTTGAAAGAAGAATATGG+TGG + chr3.1:78063049-78063068 MS.gene06292:CDS 35.0%
TGTTAATGTGAGTTCACGTT+TGG + chr3.1:78063357-78063376 MS.gene06292:CDS 35.0%
TTAACAATGGAAAGTAACCG+AGG + chr3.1:78063826-78063845 MS.gene06292:intron 35.0%
TTAATTGTTACTGTCCTGGT+TGG + chr3.1:78064248-78064267 MS.gene06292:CDS 35.0%
TTCCTGATCAAGAGATTACA+GGG + chr3.1:78064350-78064369 MS.gene06292:CDS 35.0%
! ATGTAAATCTTTTCACCCTC+TGG - chr3.1:78064229-78064248 None:intergenic 35.0%
! GAAGTGTTACAGTTGAACAA+GGG + chr3.1:78064299-78064318 MS.gene06292:CDS 35.0%
! TAGGTATCTCATGGACTAAT+TGG + chr3.1:78063642-78063661 MS.gene06292:intron 35.0%
AACCTCTGGTGATCAGAATA+AGG - chr3.1:78062503-78062522 None:intergenic 40.0%
ACATCAAGAGATGCTAGTGT+CGG + chr3.1:78062929-78062948 MS.gene06292:CDS 40.0%
ATCCAATGACCACCAATGTA+CGG + chr3.1:78062718-78062737 MS.gene06292:intron 40.0%
ATGGAAGTTGGAAAACAGGA+GGG + chr3.1:78064116-78064135 MS.gene06292:CDS 40.0%
CATTCACACAATCCGTACAT+TGG - chr3.1:78062733-78062752 None:intergenic 40.0%
CATTCACCCAATCAACATGT+TGG + chr3.1:78062635-78062654 MS.gene06292:intron 40.0%
CTCCAACGCTAAAAGGTTAA+TGG - chr3.1:78063557-78063576 None:intergenic 40.0%
CTGGTGATCAGAATAAGGAA+TGG - chr3.1:78062498-78062517 None:intergenic 40.0%
GAAGATGGAAGTTGGAAAAC+AGG + chr3.1:78064112-78064131 MS.gene06292:CDS 40.0%
GTCATTGGATTGAGATCAAG+CGG - chr3.1:78062708-78062727 None:intergenic 40.0%
GTTCCTGATCAAGAGATTAC+AGG + chr3.1:78064349-78064368 MS.gene06292:CDS 40.0%
TCAAGACAACTTGCAGATCA+CGG + chr3.1:78062890-78062909 MS.gene06292:CDS 40.0%
TCAATCAAGGTCTTGCAAGA+AGG + chr3.1:78062959-78062978 MS.gene06292:CDS 40.0%
TCATAGTCTCCAACGCTAAA+AGG - chr3.1:78063564-78063583 None:intergenic 40.0%
TGAGTTATCAGATCCCATGT+TGG - chr3.1:78063233-78063252 None:intergenic 40.0%
TGATGTGGAATCTCTTTCAG+AGG + chr3.1:78064048-78064067 MS.gene06292:CDS 40.0%
TTCCCTGTAATCTCTTGATC+AGG - chr3.1:78064355-78064374 None:intergenic 40.0%
TTCCTTATTCTGATCACCAG+AGG + chr3.1:78062498-78062517 MS.gene06292:CDS 40.0%
! CTCCATTAACCTTTTAGCGT+TGG + chr3.1:78063552-78063571 MS.gene06292:intron 40.0%
! GCTGGTGTTAATTCCAACAT+GGG + chr3.1:78063217-78063236 MS.gene06292:CDS 40.0%
! GTACGGATTGTGTGAATGTT+TGG + chr3.1:78062735-78062754 MS.gene06292:intron 40.0%
! TATATAAAGGTGGTGGTCCA+AGG + chr3.1:78062817-78062836 MS.gene06292:intron 40.0%
! TGCTGGTGTTAATTCCAACA+TGG + chr3.1:78063216-78063235 MS.gene06292:CDS 40.0%
!! CTGTCAATGAATTTGCTGAG+TGG + chr3.1:78063029-78063048 MS.gene06292:CDS 40.0%
!! GGAAGTGTTACAGTTGAACA+AGG + chr3.1:78064298-78064317 MS.gene06292:CDS 40.0%
!! TGTCGGTGTTGAATCAATCA+AGG + chr3.1:78062946-78062965 MS.gene06292:CDS 40.0%
AACCACGGCAATAGTTTCCT+TGG - chr3.1:78062837-78062856 None:intergenic 45.0%
ACGACCACCAACATGTTGAT+TGG - chr3.1:78062645-78062664 None:intergenic 45.0%
ACTGCTCTAACAGGTTATGC+AGG + chr3.1:78064277-78064296 MS.gene06292:CDS 45.0%
AGGCAGATTAATCTACGGTG+TGG - chr3.1:78063614-78063633 None:intergenic 45.0%
ATCAAGGTCTTGCAAGAAGG+TGG + chr3.1:78062962-78062981 MS.gene06292:CDS 45.0%
GAAACTATTGCCGTGGTTAC+TGG + chr3.1:78062839-78062858 MS.gene06292:CDS 45.0%
GATGGAAGTTGGAAAACAGG+AGG + chr3.1:78064115-78064134 MS.gene06292:CDS 45.0%
TCACACAATCCGTACATTGG+TGG - chr3.1:78062730-78062749 None:intergenic 45.0%
TCACCCAATCAACATGTTGG+TGG + chr3.1:78062638-78062657 MS.gene06292:intron 45.0%
TCACGTTTGGGTCGTCTAAA+TGG + chr3.1:78063370-78063389 MS.gene06292:CDS 45.0%
TGGCAAAGAAGCTCTCTGAT+AGG + chr3.1:78064203-78064222 MS.gene06292:CDS 45.0%
TGGGTGAAAACTGCTCTAAC+AGG + chr3.1:78064268-78064287 MS.gene06292:CDS 45.0%
! ATCCGTACATTGGTGGTCAT+TGG - chr3.1:78062723-78062742 None:intergenic 45.0%
! CGACCACCAACATGTTGATT+GGG - chr3.1:78062644-78062663 None:intergenic 45.0%
!! ACGGTGTGGTGCTATTAATG+TGG - chr3.1:78063600-78063619 None:intergenic 45.0%
!! ATCAACATGTTGGTGGTCGT+CGG + chr3.1:78062645-78062664 MS.gene06292:intron 45.0%
AAGCTCTCTGATAGGCCAGA+GGG + chr3.1:78064211-78064230 MS.gene06292:CDS 50.0%
AAGGGGCTGATACTGGAGTT+TGG + chr3.1:78064317-78064336 MS.gene06292:CDS 50.0%
ACTATTGCCGTGGTTACTGG+TGG + chr3.1:78062842-78062861 MS.gene06292:CDS 50.0%
ACTGGTGGAAACCGAGGAAT+TGG + chr3.1:78062857-78062876 MS.gene06292:CDS 50.0%
GAAGTTGGAAAACAGGAGGG+TGG + chr3.1:78064119-78064138 MS.gene06292:CDS 50.0%
GAGGGAGAAACTGAGTGATG+TGG + chr3.1:78064033-78064052 MS.gene06292:CDS 50.0%
GCAGCAGATGGCTTCATCAA+AGG - chr3.1:78063325-78063344 None:intergenic 50.0%
GGTCTTGCAAGAAGGTGGTT+TGG + chr3.1:78062967-78062986 MS.gene06292:CDS 50.0%
GTCCAAGGAAACTATTGCCG+TGG + chr3.1:78062832-78062851 MS.gene06292:CDS 50.0%
GTTGAACAAGGGGCTGATAC+TGG + chr3.1:78064310-78064329 MS.gene06292:CDS 50.0%
TCGGTTTCCACCAGTAACCA+CGG - chr3.1:78062852-78062871 None:intergenic 50.0%
TGGATTGAGATCAAGCGGAC+TGG - chr3.1:78062703-78062722 None:intergenic 50.0%
TTGATGAAGCCATCTGCTGC+TGG + chr3.1:78063325-78063344 MS.gene06292:CDS 50.0%
! AGAGCAGTTTTCACCCAACC+AGG - chr3.1:78064265-78064284 None:intergenic 50.0%
ATACGACCACCAGCAGCAGA+TGG - chr3.1:78063337-78063356 None:intergenic 55.0%
ATGAAGCCATCTGCTGCTGG+TGG + chr3.1:78063328-78063347 MS.gene06292:CDS 55.0%
GAAGCTCTCTGATAGGCCAG+AGG + chr3.1:78064210-78064229 MS.gene06292:CDS 55.0%
GTGGTTACTGGTGGAAACCG+AGG + chr3.1:78062851-78062870 MS.gene06292:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 78062434 78064408 78062434 ID=MS.gene06292
chr3.1 mRNA 78062434 78064408 78062434 ID=MS.gene06292.t1;Parent=MS.gene06292
chr3.1 exon 78062434 78062519 78062434 ID=MS.gene06292.t1.exon1;Parent=MS.gene06292.t1
chr3.1 CDS 78062434 78062519 78062434 ID=cds.MS.gene06292.t1;Parent=MS.gene06292.t1
chr3.1 exon 78062826 78063084 78062826 ID=MS.gene06292.t1.exon2;Parent=MS.gene06292.t1
chr3.1 CDS 78062826 78063084 78062826 ID=cds.MS.gene06292.t1;Parent=MS.gene06292.t1
chr3.1 exon 78063208 78063402 78063208 ID=MS.gene06292.t1.exon3;Parent=MS.gene06292.t1
chr3.1 CDS 78063208 78063402 78063208 ID=cds.MS.gene06292.t1;Parent=MS.gene06292.t1
chr3.1 exon 78064013 78064408 78064013 ID=MS.gene06292.t1.exon4;Parent=MS.gene06292.t1
chr3.1 CDS 78064013 78064408 78064013 ID=cds.MS.gene06292.t1;Parent=MS.gene06292.t1
Gene Sequence

>MS.gene06292

ATGGGTCACAAAGAAAAATCACGAAAAGATAAGAGATTGCAAGAGATATCCCTTTTGAGAACCATTCCTTATTCTGATCACCAGAGGTTAATTTGATCTTATAGATATATACCTATAATTCTTTTATTGTTCAATAATATTAACTTTTAGTTAGTTTTTCCTTCTGATTATCATATGAACATATGATTGTTAAATTCGATGCATTCACCCAATCAACATGTTGGTGGTCGTCGGATCAAGATTGAATAACCCATATATATTTCAATCCAGTCCGCTTGATCTCAATCCAATGACCACCAATGTACGGATTGTGTGAATGTTTGGATCGTTGATTGCAACAAATTAAAATCCGTTAAAATCATGATTTTAATATGTTACCTTTCTATATAAAGGTGGTGGTCCAAGGAAACTATTGCCGTGGTTACTGGTGGAAACCGAGGAATTGGTTTTGAGATTTCAAGACAACTTGCAGATCACGGAGTTACTGTTGTGTTGACATCAAGAGATGCTAGTGTCGGTGTTGAATCAATCAAGGTCTTGCAAGAAGGTGGTTTGGACGTCCATTGTCATCAACTTGATATATTAGATTCTTCATCTGTCAATGAATTTGCTGAGTGGTTGAAAGAAGAATATGGTGGTCTAGATATTCTGGTAAGTTTCTAAAATGTAATTAGCCAAAAAATGTGAAATTCGACTTAATTTTGTTTATAGGTGTTAGCGTTGTTAATTTTATAATTATCAATTGTTTCTTGGCTATAATTTTGTTATTTATAGGTAAATAATGCTGGTGTTAATTCCAACATGGGATCTGATAACTCAGTTGAAAATGCTCGTAAGTGTATTGAAACAAATTATTATGGGACCAAGAGAATGATTGAAGCTATGATTCCTTTGATGAAGCCATCTGCTGCTGGTGGTCGTATTGTTAATGTGAGTTCACGTTTGGGTCGTCTAAATGGCAAACGAAATGTAAGCAAACAATCTAATTGTTTCACTGAGTAATTTCTATTCTTGTAACTTGCAATACACTTTTTGCTCTCAAAATTGTATGCATAATTGCATATAGTATGATTTTTGCAAATTTATAAATATAAATTTATATAAAATTAGAATAGTATCTCCATTAACCTTTTAGCGTTGGAGACTATGATATGACGCGTTAACCACATTAATAGCACCACACCGTAGATTAATCTGCCTATGAAATTTAGGTATCTCATGGACTAATTGGTTAGTAATTAGTCCATGAACAATTGCAACTAGTGACAAATTTGTTTTTAACATAACCTAAGTTTCTTAGTCAAATTAATTCCTAATGAGCTTATATTGATGTAGGATTAACGTGTAATGTGACATGTTCAATTAATATGCCACATGCCCATATCATAGTATTTAACAATGGAAAGTAACCGAGGAATCATTTTGAATGACATTTTATAGTTTTAGGGATATATTTCCCAATTAGCAAGGGACTATTTGACCAAACATACAATTTCAATGATGAATTTGTCTGTATACTCTTGATTCTCAAATTACGCGAAATGCAAAACTGATTAACTGTAACTTGATTGTGTTACAGAGAATAGAAAATGAGGAGTTGAGGGAGAAACTGAGTGATGTGGAATCTCTTTCAGAGGAACTAATTGATGAAACTATAAATAATTTTCTACAACAAGTAGAAGATGGAAGTTGGAAAACAGGAGGGTGGCCTCAAACATTTACTGACTATTCAGTATCAAAGCTTGCAGTTAATACTTACACAAGGTATATGGCAAAGAAGCTCTCTGATAGGCCAGAGGGTGAAAAGATTTACATTAATTGTTACTGTCCTGGTTGGGTGAAAACTGCTCTAACAGGTTATGCAGGAAGTGTTACAGTTGAACAAGGGGCTGATACTGGAGTTTGGATTGCCCTTGTTCCTGATCAAGAGATTACAGGGAAGTTTTTTGCTGAAAGAAGAGAGATTAACTTTTAA
Protein sequence

>MS.gene06292.t1

MGHKEKSRKDKRLQEISLLRTIPYSDHQRWWSKETIAVVTGGNRGIGFEISRQLADHGVTVVLTSRDASVGVESIKVLQEGGLDVHCHQLDILDSSSVNEFAEWLKEEYGGLDILVNNAGVNSNMGSDNSVENARKCIETNYYGTKRMIEAMIPLMKPSAAGGRIVNVSSRLGRLNGKRNRIENEELREKLSDVESLSEELIDETINNFLQQVEDGSWKTGGWPQTFTDYSVSKLAVNTYTRYMAKKLSDRPEGEKIYINCYCPGWVKTALTGYAGSVTVEQGADTGVWIALVPDQEITGKFFAERREINF