AlfalfaGEDB | MS.gene063657

M. sativa cultivar XinJiangDaYe / MS.gene063657

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF20431.1

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063657.t1	XP_024640905.1	95.2	442	21	0	1	442	150	591	7.10E-204	719.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063657.t1	Q0WVU0	53.6	405	166	3	3	407	133	515	1.3e-92	341.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063657.t1	A0A396HR55	95.2	442	21	0	1	442	150	591	5.1e-204	719.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene063657	0.826877	2.13E-54	-1.69E-46
MS.gene049255	MS.gene063657	0.801422	9.07E-49	-1.69E-46
MS.gene049435	MS.gene063657	0.803933	2.75E-49	-1.69E-46
MS.gene049501	MS.gene063657	0.801375	9.28E-49	-1.69E-46
MS.gene049821	MS.gene063657	0.860112	2.59E-63	-1.69E-46
MS.gene049850	MS.gene063657	0.809455	1.88E-50	-1.69E-46
MS.gene050020	MS.gene063657	0.845427	4.09E-59	-1.69E-46
MS.gene050303	MS.gene063657	0.812368	4.39E-51	-1.69E-46
MS.gene050689	MS.gene063657	0.801975	6.99E-49	-1.69E-46
MS.gene050807	MS.gene063657	0.841259	5.30E-58	-1.69E-46

Showing 1 to 10 of 58 entries

Previous1 2 3 4 5 6Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene00289	MS.gene063657	PPI
MS.gene004548	MS.gene063657	PPI
MS.gene030147	MS.gene063657	PPI
MS.gene060086	MS.gene063657	PPI
MS.gene063657	MS.gene026156	PPI
MS.gene064155	MS.gene063657	PPI
MS.gene26794	MS.gene063657	PPI
MS.gene33304	MS.gene063657	PPI
MS.gene52398	MS.gene063657	PPI
MS.gene59279	MS.gene063657	PPI

Showing 1 to 10 of 15 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063657.t1	MTR_5g022740	94.091	440	26	0	1	440	150	589	0.0	853
MS.gene063657.t1	MTR_5g022740	25.403	248	166	5	89	324	106	346	3.27e-15	78.2
MS.gene063657.t1	MTR_4g024860	35.443	395	230	2	7	401	278	647	6.93e-80	267
MS.gene063657.t1	MTR_4g024860	24.907	269	180	4	53	305	192	454	6.22e-21	96.3
MS.gene063657.t1	MTR_4g024860	25.455	275	147	11	53	326	121	338	2.66e-11	66.2
MS.gene063657.t1	MTR_3g052720	33.333	441	265	3	1	437	321	736	7.90e-78	262
MS.gene063657.t1	MTR_3g052720	28.667	300	168	3	6	261	163	460	1.94e-29	122
MS.gene063657.t1	MTR_7g093900	33.412	422	247	4	1	417	258	650	1.73e-75	248
MS.gene063657.t1	MTR_7g093900	27.547	265	179	4	53	305	178	441	2.12e-22	100
MS.gene063657.t1	MTR_7g093900	23.344	317	209	6	68	383	92	375	5.61e-22	99.4

Showing 1 to 10 of 807 entries

Previous1 2 3 4 5…81Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063657.t1	AT3G51320	50.617	405	178	3	3	407	133	515	3.08e-147	430
MS.gene063657.t1	AT3G51320	26.289	194	132	2	89	271	87	280	2.45e-13	72.4
MS.gene063657.t1	AT3G62890	34.679	421	245	4	7	421	81	477	1.61e-82	265
MS.gene063657.t1	AT5G48910	35.780	436	241	5	2	423	142	552	9.51e-81	262
MS.gene063657.t1	AT5G48910	21.595	301	161	8	69	321	74	347	2.11e-16	82.0
MS.gene063657.t1	AT4G37380	34.917	421	239	5	7	421	145	536	1.77e-78	256
MS.gene063657.t1	AT4G37380	31.765	170	100	3	104	261	114	279	3.53e-13	72.0
MS.gene063657.t1	AT2G22410	32.927	410	250	3	1	410	270	654	2.86e-76	251
MS.gene063657.t1	AT2G22410	28.135	327	186	4	7	322	175	463	1.87e-30	124
MS.gene063657.t1	AT2G22410	25.778	225	143	4	84	305	117	320	3.27e-15	78.6

Showing 1 to 10 of 939 entries

Previous1 2 3 4 5…94Next

Find 117 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGTTGCGTTGATAA+AGG	0.359635	5.3:-13230855	MS.gene063657:CDS
AAAGAAGGAAAATCGGTTCA+TGG	0.412967	5.3:-13230444	MS.gene063657:CDS
AAATGTGGGGCTTATTGACG+AGG	0.649002	5.3:-13229989	MS.gene063657:CDS
AACAACTTCAACGCATAACC+AGG	0.566178	5.3:+13230552	None:intergenic
AACAAGCTCAGTCCATCCTC+AGG	0.533163	5.3:+13230249	None:intergenic
AAGAACATGACAAAATTTGA+TGG	0.449209	5.3:-13229952	MS.gene063657:CDS
AAGAAGGAAAATCGGTTCAT+GGG	0.541008	5.3:-13230443	MS.gene063657:CDS
AAGCAAATGATTGATGTGTT+TGG	0.339748	5.3:-13230060	MS.gene063657:CDS
AAGTCCACAAGATTGCTTCC+GGG	0.423003	5.3:+13229706	None:intergenic
AATACCCGGAAGCAATCTTG+TGG	0.628479	5.3:-13229710	MS.gene063657:CDS

Showing 1 to 10 of 117 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGCAAATGATTGATGTGTT+TGG	-	chr5.3:13230338-13230357	MS.gene063657:CDS	30.0%
AGCAAATGATTGATGTGTTT+GGG	-	chr5.3:13230339-13230358	MS.gene063657:CDS	30.0%
ATAAAGGTAGAATGTGTCAT+GGG	-	chr5.3:13229559-13229578	MS.gene063657:CDS	30.0%
CATAAATGATAAGCAGAAAC+TGG	+	chr5.3:13230601-13230620	None:intergenic	30.0%
CCTGATGAAATAACATTCAT+TGG	-	chr5.3:13230260-13230279	MS.gene063657:CDS	30.0%
GTTGAAGTTGTTTAGAGAAA+TGG	-	chr5.3:13229857-13229876	MS.gene063657:CDS	30.0%
TGTAATGCCTGAAAAGAATT+TGG	-	chr5.3:13229779-13229798	MS.gene063657:CDS	30.0%
AGAAAGTTAGGCATAATACC+CGG	-	chr5.3:13230674-13230693	MS.gene063657:CDS	35.0%
ATCCATGTCAACAAGAAGTT+TGG	+	chr5.3:13230558-13230577	None:intergenic	35.0%
CAAATCTTCTTGCAAATGTG+GGG	-	chr5.3:13230396-13230415	MS.gene063657:CDS	35.0%

Showing 1 to 10 of 138 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	13229546	13230874	13229546	ID=MS.gene063657
chr5.3	mRNA	13229546	13230874	13229546	ID=MS.gene063657.t1;Parent=MS.gene063657
chr5.3	exon	13229546	13230874	13229546	ID=MS.gene063657.t1.exon1;Parent=MS.gene063657.t1
chr5.3	CDS	13229546	13230874	13229546	ID=cds.MS.gene063657.t1;Parent=MS.gene063657.t1

Gene Sequence

>MS.gene063657

ATGGGTTGCGTTGATAAAGGTAGAATGTGTCATGGGCAAGCTGTGAAAAATGGGGTTGATTTTGTTTTGCCGGTGGAGAATTCGTTGGTTCATATGTATGGTTCTTGCGGGGATGTGGAGGTTGCTAGGGTGATGTTTGATGGAATGGTGAGTCGGGATTTGGTTTCGTGGAACTCAATGATTGATGGGTATGTTAAAGTTGGTGACTTGAGTGCTGCACACAGGCTGTTTGATGTAATGCCTGAAAAGAATTTGGTTAATTGGAATTGTTTGATTAGTGGGTTTTTGAAGGGTAGGAATCCTGGTTATGCGTTGAAGTTGTTTAGAGAAATGGGTCGCCTGAGAATTAGAGGGAATGATAGGACTATGGTTTGTGTGGTTACGGCTTGTGGACGGTCGGGTAGACTTAAAGAAGGAAAATCGGTTCATGGGAGTATGATTAGGTTGTTTACGAGGTCAAGTTTGATTCTTGACACTGCTTTGATAGATATGTATTGTAAATGCGGGAGAGTTGAGGCGGCTAGTAAAGTTTTTGAGAGGATGAGTAGTAGGAATTTGGTTTCGTGGAATGCAATGATTTTGGGGCATTGCATCCATGGGAATCCTGAGGATGGACTGAGCTTGTTTGATTTAATGGTTGGGATGGAGAGTGTGAAAGGTGAAGTTGAGGTTGATGAAAGTCCAAGTGCAGATAGGGGTTTGGTGAGGTTACTCCCTGATGAAATAACATTCATTGGCATTCTTTGTGCGTGTGCTCGGGCGGAACTGTTGAGTGAAGGCAGGTCTTACTTTAAGCAAATGATTGATGTGTTTGGGCTGAAGCCGAATTTCGCTCATTTTTGGTGCATGGCAAATCTTCTTGCAAATGTGGGGCTTATTGACGAGGCAGAAGAATGCCTGAAGAACATGACAAAATTTGATGGGTATATCTCACAGGAGTCATTGTTATGGGCAAGTTTGCTCGGTTTGTGTCGTTTCAAGAGAGATGTGTACTTAGGGGAACAGATTGCCAAACTTCTTGTTGACATGGATCCTAAGAACCTAGCCTGTTACCAGTTTCTGCTTATCATTTATGCAGTGGCTGCTCAATGGGAGAATGTTTCAGGAGTGCAAAAACTGATGAAGGAAAGAAAGTTAGGCATAATACCCGGAAGCAATCTTGTGGACTTGAAAAATATTGTTCACAATTTCAAAGTGTCAAACAATCGGCGCGAAGGAATTGAAGCTGTAAACATAATGATGAATGAACTATCTCATAGATTTGGGTTGCCTTGTGCTGATTCTGGACAATCATCGGTGGACCAGAGAGAATTGCAAAAACCAGGATGA

Protein sequence

>MS.gene063657.t1

MGCVDKGRMCHGQAVKNGVDFVLPVENSLVHMYGSCGDVEVARVMFDGMVSRDLVSWNSMIDGYVKVGDLSAAHRLFDVMPEKNLVNWNCLISGFLKGRNPGYALKLFREMGRLRIRGNDRTMVCVVTACGRSGRLKEGKSVHGSMIRLFTRSSLILDTALIDMYCKCGRVEAASKVFERMSSRNLVSWNAMILGHCIHGNPEDGLSLFDLMVGMESVKGEVEVDESPSADRGLVRLLPDEITFIGILCACARAELLSEGRSYFKQMIDVFGLKPNFAHFWCMANLLANVGLIDEAEECLKNMTKFDGYISQESLLWASLLGLCRFKRDVYLGEQIAKLLVDMDPKNLACYQFLLIIYAVAAQWENVSGVQKLMKERKLGIIPGSNLVDLKNIVHNFKVSNNRREGIEAVNIMMNELSHRFGLPCADSGQSSVDQRELQKPG