Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064917.t1 | XP_003598266.2 | 90.2 | 327 | 24 | 1 | 1 | 319 | 17 | 343 | 1.90E-159 | 572 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064917.t1 | Q8N5I4 | 32.7 | 269 | 152 | 11 | 61 | 317 | 38 | 289 | 5.2e-25 | 116.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064917.t1 | G7J0B2 | 90.2 | 327 | 24 | 1 | 1 | 319 | 17 | 343 | 1.4e-159 | 572.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064917 | MS.gene061158 | PPI |
| MS.gene064917 | MS.gene006264 | PPI |
| MS.gene064917 | MS.gene061157 | PPI |
| MS.gene064917 | MS.gene34137 | PPI |
| MS.gene064917 | MS.gene49121 | PPI |
| MS.gene064917 | MS.gene55839 | PPI |
| MS.gene064917 | MS.gene34138 | PPI |
| MS.gene064917 | MS.gene34141 | PPI |
| MS.gene064917 | MS.gene006265 | PPI |
| MS.gene064917 | MS.gene40431 | PPI |
| MS.gene064917 | MS.gene95938 | PPI |
| MS.gene064917 | MS.gene20199 | PPI |
| MS.gene064917 | MS.gene037994 | PPI |
| MS.gene064917 | MS.gene34140 | PPI |
| MS.gene064917 | MS.gene061155 | PPI |
| MS.gene064917 | MS.gene24053 | PPI |
| MS.gene064917 | MS.gene058995 | PPI |
| MS.gene064917 | MS.gene006262 | PPI |
| MS.gene064917 | MS.gene49118 | PPI |
| MS.gene064917 | MS.gene035607 | PPI |
| MS.gene064917 | MS.gene061154 | PPI |
| MS.gene064917 | MS.gene57782 | PPI |
| MS.gene064917 | MS.gene05158 | PPI |
| MS.gene064917 | MS.gene012538 | PPI |
| MS.gene064917 | MS.gene49120 | PPI |
| MS.gene064917 | MS.gene061893 | PPI |
| MS.gene064917 | MS.gene06120 | PPI |
| MS.gene064917 | MS.gene42492 | PPI |
| MS.gene006263 | MS.gene064917 | PPI |
| MS.gene064917 | MS.gene49117 | PPI |
| MS.gene064917 | MS.gene048973 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064917.t1 | MTR_3g009190 | 90.214 | 327 | 24 | 1 | 1 | 319 | 17 | 343 | 0.0 | 587 |
| MS.gene064917.t1 | MTR_3g009190 | 90.741 | 324 | 22 | 1 | 4 | 319 | 2 | 325 | 0.0 | 587 |
| MS.gene064917.t1 | MTR_6g453040 | 88.779 | 303 | 26 | 1 | 25 | 319 | 1 | 303 | 0.0 | 540 |
| MS.gene064917.t1 | MTR_3g091070 | 83.168 | 303 | 25 | 2 | 25 | 319 | 1 | 285 | 1.04e-178 | 498 |
| MS.gene064917.t1 | MTR_6g453040 | 85.563 | 284 | 29 | 2 | 4 | 279 | 2 | 281 | 1.81e-171 | 479 |
| MS.gene064917.t1 | MTR_3g009190 | 87.786 | 262 | 24 | 1 | 66 | 319 | 63 | 324 | 8.38e-160 | 452 |
| MS.gene064917.t1 | MTR_6g453040 | 89.388 | 245 | 25 | 1 | 4 | 247 | 2 | 246 | 2.51e-155 | 436 |
| MS.gene064917.t1 | MTR_3g009200 | 73.596 | 178 | 27 | 4 | 104 | 270 | 2 | 170 | 7.86e-83 | 250 |
| MS.gene064917.t1 | MTR_6g453030 | 87.013 | 77 | 10 | 0 | 94 | 170 | 1 | 77 | 3.16e-41 | 139 |
| MS.gene064917.t1 | MTR_3g077410 | 29.630 | 270 | 173 | 8 | 55 | 317 | 28 | 287 | 2.34e-23 | 99.4 |
| MS.gene064917.t1 | MTR_4g105310 | 27.376 | 263 | 174 | 7 | 62 | 317 | 46 | 298 | 4.18e-21 | 93.2 |
| MS.gene064917.t1 | MTR_8g099995 | 30.638 | 235 | 146 | 6 | 67 | 292 | 38 | 264 | 1.18e-20 | 91.7 |
| MS.gene064917.t1 | MTR_4g105310 | 28.507 | 221 | 143 | 7 | 62 | 275 | 46 | 258 | 6.58e-18 | 82.8 |
| MS.gene064917.t1 | MTR_6g041980 | 28.507 | 221 | 140 | 8 | 14 | 225 | 13 | 224 | 3.31e-17 | 80.9 |
| MS.gene064917.t1 | MTR_7g099850 | 27.444 | 266 | 160 | 8 | 67 | 317 | 37 | 284 | 3.82e-17 | 81.6 |
| MS.gene064917.t1 | MTR_6g041980 | 25.806 | 310 | 195 | 12 | 14 | 312 | 13 | 298 | 1.10e-16 | 80.5 |
| MS.gene064917.t1 | MTR_1g068970 | 28.205 | 234 | 145 | 6 | 67 | 289 | 37 | 258 | 2.59e-16 | 79.0 |
| MS.gene064917.t1 | MTR_8g098415 | 29.323 | 266 | 156 | 7 | 66 | 317 | 31 | 278 | 7.76e-15 | 74.7 |
| MS.gene064917.t1 | MTR_8g098415 | 29.434 | 265 | 155 | 7 | 67 | 317 | 32 | 278 | 8.14e-15 | 74.7 |
| MS.gene064917.t1 | MTR_1g100395 | 27.138 | 269 | 156 | 9 | 67 | 317 | 32 | 278 | 8.34e-14 | 71.6 |
| MS.gene064917.t1 | MTR_1g100305 | 28.889 | 270 | 150 | 11 | 67 | 317 | 32 | 278 | 8.91e-14 | 71.6 |
| MS.gene064917.t1 | MTR_1g100335 | 27.928 | 222 | 137 | 6 | 67 | 277 | 32 | 241 | 7.57e-13 | 68.2 |
| MS.gene064917.t1 | MTR_1g100335 | 27.928 | 222 | 137 | 6 | 67 | 277 | 32 | 241 | 8.40e-13 | 68.2 |
| MS.gene064917.t1 | MTR_1g100315 | 27.948 | 229 | 134 | 7 | 66 | 279 | 31 | 243 | 1.38e-12 | 68.2 |
| MS.gene064917.t1 | MTR_6g081020 | 28.682 | 258 | 158 | 10 | 38 | 281 | 34 | 279 | 3.04e-12 | 67.4 |
| MS.gene064917.t1 | MTR_1g068970 | 27.513 | 189 | 114 | 6 | 112 | 289 | 15 | 191 | 1.01e-11 | 64.7 |
| MS.gene064917.t1 | MTR_8g098415 | 29.032 | 217 | 122 | 7 | 115 | 317 | 23 | 221 | 1.56e-11 | 64.3 |
| MS.gene064917.t1 | MTR_6g053550 | 28.390 | 236 | 129 | 9 | 66 | 281 | 39 | 254 | 4.13e-11 | 63.5 |
| MS.gene064917.t1 | MTR_6g053600 | 28.958 | 259 | 139 | 11 | 67 | 300 | 26 | 264 | 7.47e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064917.t1 | AT5G04070 | 52.381 | 315 | 142 | 1 | 7 | 313 | 1 | 315 | 5.21e-103 | 307 |
| MS.gene064917.t1 | AT5G15940 | 50.305 | 328 | 145 | 4 | 6 | 319 | 1 | 324 | 1.73e-96 | 291 |
| MS.gene064917.t1 | AT5G15940 | 50.305 | 328 | 145 | 4 | 6 | 319 | 1 | 324 | 1.73e-96 | 291 |
| MS.gene064917.t1 | AT5G15940 | 50.156 | 321 | 143 | 3 | 6 | 313 | 1 | 317 | 2.45e-96 | 289 |
| MS.gene064917.t1 | AT5G15940 | 50.459 | 327 | 144 | 4 | 7 | 319 | 1 | 323 | 4.22e-96 | 290 |
| MS.gene064917.t1 | AT2G37540 | 32.735 | 223 | 135 | 6 | 67 | 282 | 36 | 250 | 2.94e-21 | 92.0 |
| MS.gene064917.t1 | AT2G37540 | 32.870 | 216 | 130 | 6 | 67 | 275 | 36 | 243 | 7.55e-21 | 92.0 |
| MS.gene064917.t1 | AT4G24050 | 30.213 | 235 | 147 | 5 | 67 | 292 | 37 | 263 | 1.85e-20 | 90.1 |
| MS.gene064917.t1 | AT4G09750 | 29.762 | 252 | 149 | 9 | 67 | 312 | 46 | 275 | 5.88e-20 | 89.7 |
| MS.gene064917.t1 | AT4G24050 | 30.213 | 235 | 147 | 5 | 67 | 292 | 37 | 263 | 7.77e-20 | 89.4 |
| MS.gene064917.t1 | AT4G23430 | 28.679 | 265 | 158 | 7 | 66 | 317 | 31 | 277 | 1.22e-18 | 85.9 |
| MS.gene064917.t1 | AT1G64590 | 28.205 | 234 | 151 | 5 | 68 | 292 | 38 | 263 | 2.70e-18 | 85.1 |
| MS.gene064917.t1 | AT5G02540 | 31.222 | 221 | 129 | 6 | 78 | 287 | 47 | 255 | 4.13e-17 | 81.6 |
| MS.gene064917.t1 | AT4G23430 | 29.213 | 267 | 156 | 9 | 66 | 317 | 31 | 279 | 5.08e-17 | 81.3 |
| MS.gene064917.t1 | AT4G23420 | 30.180 | 222 | 124 | 9 | 67 | 273 | 32 | 237 | 7.25e-16 | 77.0 |
| MS.gene064917.t1 | AT4G23420 | 30.180 | 222 | 124 | 9 | 67 | 273 | 32 | 237 | 1.14e-15 | 76.6 |
| MS.gene064917.t1 | AT4G23420 | 28.253 | 269 | 160 | 10 | 67 | 320 | 32 | 282 | 1.41e-15 | 77.0 |
| MS.gene064917.t1 | AT4G23420 | 28.253 | 269 | 160 | 10 | 67 | 320 | 32 | 282 | 1.41e-15 | 77.0 |
| MS.gene064917.t1 | AT4G23420 | 28.253 | 269 | 160 | 10 | 67 | 320 | 49 | 299 | 1.78e-15 | 76.6 |
| MS.gene064917.t1 | AT5G50130 | 25.969 | 258 | 173 | 7 | 68 | 317 | 40 | 287 | 6.08e-15 | 75.5 |
| MS.gene064917.t1 | AT5G50130 | 25.781 | 256 | 173 | 7 | 69 | 317 | 8 | 253 | 9.64e-15 | 74.3 |
| MS.gene064917.t1 | AT5G50130 | 25.681 | 257 | 173 | 7 | 69 | 317 | 8 | 254 | 1.20e-14 | 73.9 |
| MS.gene064917.t1 | AT5G50130 | 25.738 | 237 | 151 | 6 | 68 | 292 | 40 | 263 | 1.67e-14 | 73.9 |
| MS.gene064917.t1 | AT5G50130 | 25.751 | 233 | 157 | 6 | 68 | 292 | 40 | 264 | 2.01e-14 | 73.6 |
| MS.gene064917.t1 | AT5G50130 | 26.852 | 216 | 143 | 6 | 67 | 275 | 39 | 246 | 2.73e-14 | 72.4 |
| MS.gene064917.t1 | AT5G50130 | 26.728 | 217 | 143 | 6 | 67 | 275 | 39 | 247 | 2.79e-14 | 72.4 |
| MS.gene064917.t1 | AT5G50130 | 26.484 | 219 | 136 | 6 | 69 | 275 | 8 | 213 | 4.44e-14 | 72.4 |
| MS.gene064917.t1 | AT5G50130 | 26.512 | 215 | 142 | 6 | 69 | 275 | 8 | 214 | 5.38e-14 | 72.0 |
| MS.gene064917.t1 | AT4G23430 | 26.437 | 261 | 159 | 7 | 66 | 317 | 31 | 267 | 7.23e-13 | 68.9 |
| MS.gene064917.t1 | AT5G53090 | 30.952 | 252 | 149 | 10 | 37 | 278 | 33 | 269 | 7.54e-13 | 69.3 |
| MS.gene064917.t1 | AT4G11410 | 27.650 | 217 | 142 | 5 | 66 | 275 | 31 | 239 | 1.30e-12 | 67.4 |
| MS.gene064917.t1 | AT5G53100 | 32.456 | 228 | 131 | 9 | 63 | 278 | 43 | 259 | 1.35e-12 | 68.6 |
| MS.gene064917.t1 | AT4G11410 | 26.718 | 262 | 168 | 7 | 66 | 317 | 31 | 278 | 2.78e-12 | 67.4 |
| MS.gene064917.t1 | AT4G27760 | 30.973 | 226 | 133 | 10 | 63 | 277 | 56 | 269 | 5.19e-12 | 67.0 |
| MS.gene064917.t1 | AT5G54190 | 27.103 | 214 | 122 | 7 | 64 | 250 | 92 | 298 | 8.57e-12 | 66.2 |
| MS.gene064917.t1 | AT4G23430 | 26.996 | 263 | 157 | 9 | 66 | 317 | 31 | 269 | 2.93e-11 | 63.9 |
Find 0 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACTTTATTATATTTC+TGG | + | 43124:15241-15260 | MS.gene064917:intron | 10.0% |
| !! | AACATGAATAAAAATTAGAT+GGG | + | 43124:15163-15182 | MS.gene064917:intron | 15.0% |
| !! | ATAAATAAATTATACAGATC+AGG | - | 43124:13759-13778 | None:intergenic | 15.0% |
| !! | ATCACATTAATACTTTAATT+AGG | - | 43124:14675-14694 | None:intergenic | 15.0% |
| !! | CAAAAAATGAATATTAAAAG+TGG | - | 43124:15288-15307 | None:intergenic | 15.0% |
| !! | GTATAATTTATTTATGCTTT+GGG | + | 43124:13764-13783 | MS.gene064917:intron | 15.0% |
| !! | TATAATTTATTTATGCTTTG+GGG | + | 43124:13765-13784 | MS.gene064917:intron | 15.0% |
| !! | TATATTAATTATTAGCAACA+TGG | + | 43124:13325-13344 | MS.gene064917:intron | 15.0% |
| !! | TGTATAATTTATTTATGCTT+TGG | + | 43124:13763-13782 | MS.gene064917:intron | 15.0% |
| !!! | AAAGAAAATAAAAGTTGATT+TGG | - | 43124:14589-14608 | None:intergenic | 15.0% |
| !!! | ATAAAAGGATTTAAAACATA+AGG | - | 43124:12750-12769 | None:intergenic | 15.0% |
| !!! | TCTATTTTTACAAATTTCTA+TGG | + | 43124:13068-13087 | MS.gene064917:intron | 15.0% |
| !! | AAATCAAAACAATATCCATA+TGG | + | 43124:14370-14389 | MS.gene064917:CDS | 20.0% |
| !! | ATAATATAAACCAAAAAGTG+AGG | - | 43124:14193-14212 | None:intergenic | 20.0% |
| !! | GAACATGAATAAAAATTAGA+TGG | + | 43124:15162-15181 | MS.gene064917:intron | 20.0% |
| !!! | AGAAAATCAATAAGTGTTTT+GGG | - | 43124:14253-14272 | None:intergenic | 20.0% |
| !!! | CATTTTTTCAAATAGTCTTT+AGG | - | 43124:13215-13234 | None:intergenic | 20.0% |
| !!! | CTTATTGATTTTCTCTATAA+TGG | + | 43124:14259-14278 | MS.gene064917:intron | 20.0% |
| !!! | TAGGTTATTTGTTTTTGTAT+AGG | + | 43124:14646-14665 | MS.gene064917:intron | 20.0% |
| !!! | TGATGTTACATTAACAATTT+TGG | - | 43124:14135-14154 | None:intergenic | 20.0% |
| !!! | TTGATCAATTTTATTGTGAA+TGG | - | 43124:12844-12863 | None:intergenic | 20.0% |
| !!! | TTGTGTGTTTTTATAACTAT+AGG | + | 43124:14627-14646 | MS.gene064917:intron | 20.0% |
| ! | AATAATGAAATTTGCAAGAG+AGG | - | 43124:12580-12599 | None:intergenic | 25.0% |
| ! | AATTGTGTTGTAGAAAATAG+TGG | - | 43124:12784-12803 | None:intergenic | 25.0% |
| ! | ATAATGAAATTTGCAAGAGA+GGG | - | 43124:12579-12598 | None:intergenic | 25.0% |
| ! | ATACATGCTAGTTAAGAATT+AGG | - | 43124:14470-14489 | None:intergenic | 25.0% |
| ! | ATTGACATAATCATGAGATT+TGG | - | 43124:12921-12940 | None:intergenic | 25.0% |
| ! | CAAATACTAATAAACAATGC+CGG | + | 43124:13547-13566 | MS.gene064917:CDS | 25.0% |
| ! | TACATGCTAGTTAAGAATTA+GGG | - | 43124:14469-14488 | None:intergenic | 25.0% |
| ! | TAGACCATAACAAAGATTAA+AGG | + | 43124:13403-13422 | MS.gene064917:intron | 25.0% |
| ! | TATAAAAACACACAACACTT+GGG | - | 43124:14622-14641 | None:intergenic | 25.0% |
| ! | TTATAAAAACACACAACACT+TGG | - | 43124:14623-14642 | None:intergenic | 25.0% |
| ! | TTCTCATTACCAATTGTTTA+AGG | + | 43124:12446-12465 | MS.gene064917:CDS | 25.0% |
| !! | AAAGCTTAAATCATTTTGCA+AGG | - | 43124:15217-15236 | None:intergenic | 25.0% |
| !! | AAAGCTTTATATAATCACAG+TGG | - | 43124:12876-12895 | None:intergenic | 25.0% |
| !! | GAAAATCAATAAGTGTTTTG+GGG | - | 43124:14252-14271 | None:intergenic | 25.0% |
| !! | GAGAAAATCAATAAGTGTTT+TGG | - | 43124:14254-14273 | None:intergenic | 25.0% |
| !! | GGGAAAGATTAATTTGATAA+AGG | + | 43124:12344-12363 | MS.gene064917:CDS | 25.0% |
| !!! | AGTTCTGAACTTTGAATTAA+AGG | + | 43124:14867-14886 | MS.gene064917:intron | 25.0% |
| !!! | ATATTTCTGGTTAATAACCA+TGG | + | 43124:15254-15273 | MS.gene064917:intron | 25.0% |
| !!! | TACAATGGATGCATTTTAAT+GGG | + | 43124:13910-13929 | MS.gene064917:intron | 25.0% |
| !!! | TTAAATGTCAACTTTTGAGA+TGG | + | 43124:13810-13829 | MS.gene064917:intron | 25.0% |
| !!! | TTAACAATTTTGGAAGATAC+AGG | - | 43124:14125-14144 | None:intergenic | 25.0% |
| AAATGATTATCCTACTAGCT+CGG | - | 43124:14166-14185 | None:intergenic | 30.0% | |
| AACAATTTGTAGGAAAGTCA+TGG | - | 43124:14731-14750 | None:intergenic | 30.0% | |
| ACTAAGACAATAGACAAACA+TGG | - | 43124:13976-13995 | None:intergenic | 30.0% | |
| ACTAATATGCAGATTGATGA+GGG | + | 43124:14322-14341 | MS.gene064917:CDS | 30.0% | |
| AGTAACTGAAGAAAAGTGAT+TGG | - | 43124:14305-14324 | None:intergenic | 30.0% | |
| ATCAAACTCTTTGGCTAATT+AGG | - | 43124:14998-15017 | None:intergenic | 30.0% | |
| ATCAGTTGTAGTCATATCTA+AGG | + | 43124:15589-15608 | MS.gene064917:CDS | 30.0% | |
| ATGAGAAAATGCAACAGAAA+AGG | - | 43124:12433-12452 | None:intergenic | 30.0% | |
| ATGATCGGCACAAATTATAT+CGG | + | 43124:14053-14072 | MS.gene064917:CDS | 30.0% | |
| ATTAAGATCTTCACAATGCA+TGG | - | 43124:13362-13381 | None:intergenic | 30.0% | |
| ATTGTATCCTTAACAAGAGA+GGG | - | 43124:14911-14930 | None:intergenic | 30.0% | |
| CAGAACTATATGAGAATTAC+TGG | - | 43124:14854-14873 | None:intergenic | 30.0% | |
| CCAACCTTTAATCTTTGTTA+TGG | - | 43124:13410-13429 | None:intergenic | 30.0% | |
| CCATAACAAAGATTAAAGGT+TGG | + | 43124:13407-13426 | MS.gene064917:CDS | 30.0% | |
| GAAAGAGTGGAAAATATAGT+TGG | - | 43124:14026-14045 | None:intergenic | 30.0% | |
| GATTAATCATCTTGCATCAA+AGG | - | 43124:13938-13957 | None:intergenic | 30.0% | |
| TAATTAGCCAAAGAGTTTGA+TGG | + | 43124:14997-15016 | MS.gene064917:intron | 30.0% | |
| TACTAATATGCAGATTGATG+AGG | + | 43124:14321-14340 | MS.gene064917:CDS | 30.0% | |
| TACTCATATATCTGACCATA+TGG | - | 43124:14388-14407 | None:intergenic | 30.0% | |
| TGATGTTTCAAAAAGACTGA+AGG | + | 43124:15536-15555 | MS.gene064917:intron | 30.0% | |
| TGGTGTATGTGTCTATATAT+TGG | + | 43124:13133-13152 | MS.gene064917:intron | 30.0% | |
| TGTTATGGTCTATCAAACAA+CGG | - | 43124:13395-13414 | None:intergenic | 30.0% | |
| TTAGATATGACTACAACTGA+TGG | - | 43124:15590-15609 | None:intergenic | 30.0% | |
| ! | AAAATTTTTGTCTCCCAACA+AGG | + | 43124:14943-14962 | MS.gene064917:intron | 30.0% |
| ! | CATTTTTCCATCAAACTCTT+TGG | - | 43124:15007-15026 | None:intergenic | 30.0% |
| ! | CTATATGAGAATTACTGGTT+TGG | - | 43124:14849-14868 | None:intergenic | 30.0% |
| ! | GAAGGATATGTTGTTGTTAT+TGG | + | 43124:12679-12698 | MS.gene064917:CDS | 30.0% |
| ! | GTACAATGGATGCATTTTAA+TGG | + | 43124:13909-13928 | MS.gene064917:intron | 30.0% |
| ! | GTGGATTGTTAGCATATAAA+AGG | - | 43124:12765-12784 | None:intergenic | 30.0% |
| ! | TTTAGGACACACTCTATTAT+TGG | - | 43124:13198-13217 | None:intergenic | 30.0% |
| !! | AGAAGCATTTGTATGTACAA+TGG | + | 43124:13895-13914 | MS.gene064917:intron | 30.0% |
| !! | GGTGTTATTTATGCAACAAT+AGG | - | 43124:15092-15111 | None:intergenic | 30.0% |
| !! | TCATTTTAGTCCTCACTTTT+TGG | + | 43124:14180-14199 | MS.gene064917:intron | 30.0% |
| !! | TTATTTATGCTTTGGGGATA+TGG | + | 43124:13771-13790 | MS.gene064917:intron | 30.0% |
| !!! | CTATCATTTTTTTCCTGTGT+AGG | + | 43124:12612-12631 | MS.gene064917:intron | 30.0% |
| AAACCCAAAGTCACTCTTAT+TGG | - | 43124:15113-15132 | None:intergenic | 35.0% | |
| AACACCAATAAGAGTGACTT+TGG | + | 43124:15106-15125 | MS.gene064917:intron | 35.0% | |
| AACCACTAACACAGAAGATT+AGG | - | 43124:13635-13654 | None:intergenic | 35.0% | |
| AATTAGGTAGTTGTAGCTTC+AGG | - | 43124:14982-15001 | None:intergenic | 35.0% | |
| ACAAAATCATATCCTACCCA+AGG | + | 43124:12484-12503 | MS.gene064917:CDS | 35.0% | |
| ACAAGACACTATGTTCTGAT+TGG | - | 43124:14812-14831 | None:intergenic | 35.0% | |
| ACACCAATAAGAGTGACTTT+GGG | + | 43124:15107-15126 | MS.gene064917:intron | 35.0% | |
| ACCCTTTATTGTGTTATGCA+AGG | - | 43124:13704-13723 | None:intergenic | 35.0% | |
| ACTTTCTATTAGTGCATGTC+TGG | - | 43124:12956-12975 | None:intergenic | 35.0% | |
| AGACATGCACTAATAGAAAG+TGG | + | 43124:12955-12974 | MS.gene064917:intron | 35.0% | |
| AGAGCGAATCCTTAAACAAT+TGG | - | 43124:12458-12477 | None:intergenic | 35.0% | |
| AGTGATTGGAAAGGTTCTAT+AGG | - | 43124:14291-14310 | None:intergenic | 35.0% | |
| AGTTGTGCAGAAAAGAACTT+GGG | - | 43124:14758-14777 | None:intergenic | 35.0% | |
| ATGGTAATAAGTAAGTGCGT+TGG | - | 43124:15571-15590 | None:intergenic | 35.0% | |
| ATGTTTGTTTGTACAACTCC+AGG | - | 43124:15337-15356 | None:intergenic | 35.0% | |
| ATTAGGTAGTTGTAGCTTCA+GGG | - | 43124:14981-15000 | None:intergenic | 35.0% | |
| CATTGTATCCTTAACAAGAG+AGG | - | 43124:14912-14931 | None:intergenic | 35.0% | |
| CTCGATTCAATTCTTGAGAA+TGG | + | 43124:12395-12414 | MS.gene064917:CDS | 35.0% | |
| CTGAAGAAAAGTGATTGGAA+AGG | - | 43124:14300-14319 | None:intergenic | 35.0% | |
| CTTGGGAAACAACAATTTGT+AGG | - | 43124:14741-14760 | None:intergenic | 35.0% | |
| GAAGCATGGTCATAACAAAT+GGG | - | 43124:14079-14098 | None:intergenic | 35.0% | |
| GACAGTAAAACCAAAAGAGT+AGG | - | 43124:14227-14246 | None:intergenic | 35.0% | |
| GCCTTGCATAACACAATAAA+GGG | + | 43124:13700-13719 | MS.gene064917:intron | 35.0% | |
| GCTTTATATAATCACAGTGG+CGG | - | 43124:12873-12892 | None:intergenic | 35.0% | |
| TAAAAGTGGAGTAGAAACCA+TGG | - | 43124:15274-15293 | None:intergenic | 35.0% | |
| TAGAAGTGGTAATAGAAGCA+TGG | - | 43124:14093-14112 | None:intergenic | 35.0% | |
| TATCAGTTCCATAAAGTTCC+CGG | - | 43124:13859-13878 | None:intergenic | 35.0% | |
| TGCCTTGCATAACACAATAA+AGG | + | 43124:13699-13718 | MS.gene064917:intron | 35.0% | |
| TTCCTAATCTTCTGTGTTAG+TGG | + | 43124:13630-13649 | MS.gene064917:intron | 35.0% | |
| TTGTATCCTTAACAAGAGAG+GGG | - | 43124:14910-14929 | None:intergenic | 35.0% | |
| ! | AGAAGCATGGTCATAACAAA+TGG | - | 43124:14080-14099 | None:intergenic | 35.0% |
| ! | TTCTTTTCTGCACAACTCAT+TGG | + | 43124:14761-14780 | MS.gene064917:intron | 35.0% |
| !! | ACTGCTAAAAAAGTACTCAC+AGG | - | 43124:15478-15497 | None:intergenic | 35.0% |
| !!! | AACTCATTGGCTCTTACTTT+TGG | + | 43124:14774-14793 | MS.gene064917:intron | 35.0% |
| AGTAAGAGCGGCATCAATAA+TGG | - | 43124:15452-15471 | None:intergenic | 40.0% | |
| ATCAGAGCAATTGTTGTCAG+AGG | + | 43124:13295-13314 | MS.gene064917:CDS | 40.0% | |
| ATTGATGAGGGAACTGTATC+TGG | + | 43124:14334-14353 | MS.gene064917:CDS | 40.0% | |
| ATTTGCATGACATGATCACC+GGG | + | 43124:13838-13857 | MS.gene064917:intron | 40.0% | |
| CAATCCATACCAGGAATCTT+AGG | - | 43124:13262-13281 | None:intergenic | 40.0% | |
| CACACAACACTTGGGAAAAA+TGG | - | 43124:14614-14633 | None:intergenic | 40.0% | |
| CGTGGTCTAGGTTATTTAGT+GGG | + | 43124:13166-13185 | MS.gene064917:intron | 40.0% | |
| CTTACCTAAGATTCCTGGTA+TGG | + | 43124:13255-13274 | MS.gene064917:intron | 40.0% | |
| GAGTTGTGCAGAAAAGAACT+TGG | - | 43124:14759-14778 | None:intergenic | 40.0% | |
| GATTTGCATGACATGATCAC+CGG | + | 43124:13837-13856 | MS.gene064917:intron | 40.0% | |
| GCATTCTTACCTAAGATTCC+TGG | + | 43124:13250-13269 | MS.gene064917:intron | 40.0% | |
| TACTGCATGCAAGCTTTCTA+AGG | + | 43124:12657-12676 | MS.gene064917:CDS | 40.0% | |
| TAGTCACAACTCACATGTGT+CGG | - | 43124:13035-13054 | None:intergenic | 40.0% | |
| TCAAGAATTGAATCGAGCAG+AGG | - | 43124:12392-12411 | None:intergenic | 40.0% | |
| TCTGATGAGATTTACCCATC+TGG | - | 43124:14547-14566 | None:intergenic | 40.0% | |
| TTAGGTAGTTGTAGCTTCAG+GGG | - | 43124:14980-14999 | None:intergenic | 40.0% | |
| TTAGTGCATGTCTGGATTGA+TGG | - | 43124:12948-12967 | None:intergenic | 40.0% | |
| TTGATGAGGGAACTGTATCT+GGG | + | 43124:14335-14354 | MS.gene064917:CDS | 40.0% | |
| TTGTGTTGTGTCTGGTGTAT+TGG | + | 43124:13113-13132 | MS.gene064917:intron | 40.0% | |
| TTTCAGTGTTGTGTTGTGTC+TGG | + | 43124:13105-13124 | MS.gene064917:intron | 40.0% | |
| TTTCTATGGTGTCTATGCGT+CGG | + | 43124:13082-13101 | MS.gene064917:intron | 40.0% | |
| ! | AACGGGCTTATTAGGAAAAG+TGG | - | 43124:12520-12539 | None:intergenic | 40.0% |
| ! | ATAATTTGTGCCGATCATCC+TGG | - | 43124:14051-14070 | None:intergenic | 40.0% |
| ! | GTCTAGTGATCCTACTCTTT+TGG | + | 43124:14214-14233 | MS.gene064917:intron | 40.0% |
| ! | TAATTGACTCAACCGACGAA+AGG | - | 43124:13468-13487 | None:intergenic | 40.0% |
| ! | TAATTTGTGCCGATCATCCT+GGG | - | 43124:14050-14069 | None:intergenic | 40.0% |
| ! | TATATTGGTGCTTCATTGCG+TGG | + | 43124:13148-13167 | MS.gene064917:intron | 40.0% |
| ! | TATTTTCCACTCTTTCTCCC+AGG | + | 43124:14030-14049 | MS.gene064917:intron | 40.0% |
| ! | TTTTCCTGTGTAGGCAACAT+CGG | + | 43124:12621-12640 | MS.gene064917:intron | 40.0% |
| !! | GCTAAAAAAGTACTCACAGG+CGG | - | 43124:15475-15494 | None:intergenic | 40.0% |
| AAAGTGGACGATGAAGACCT+TGG | - | 43124:12504-12523 | None:intergenic | 45.0% | |
| AAGTGGACGATGAAGACCTT+GGG | - | 43124:12503-12522 | None:intergenic | 45.0% | |
| AATCCAAAAGCCATTGCTGC+AGG | - | 43124:13507-13526 | None:intergenic | 45.0% | |
| ACTCTTTCTCCCAGGATGAT+CGG | + | 43124:14038-14057 | MS.gene064917:intron | 45.0% | |
| AGGGGATGTTGCAAGTATTC+CGG | - | 43124:13569-13588 | None:intergenic | 45.0% | |
| AGTGCGTGTTTGACATGTGT+TGG | + | 43124:13006-13025 | MS.gene064917:intron | 45.0% | |
| ATCCAAAAGCCATTGCTGCA+GGG | - | 43124:13506-13525 | None:intergenic | 45.0% | |
| CATGATCACCGGGAACTTTA+TGG | + | 43124:13848-13867 | MS.gene064917:intron | 45.0% | |
| CTATTGGAATCCTCTGACTG+CGG | + | 43124:15418-15437 | MS.gene064917:CDS | 45.0% | |
| GAAACTCACTTGTGCACTTG+TGG | + | 43124:15056-15075 | MS.gene064917:intron | 45.0% | |
| GCGTGGTCTAGGTTATTTAG+TGG | + | 43124:13165-13184 | MS.gene064917:intron | 45.0% | |
| TATTCAGGCTGACCTTTCGT+CGG | + | 43124:13453-13472 | MS.gene064917:CDS | 45.0% | |
| TATTGGAATCCTCTGACTGC+GGG | + | 43124:15419-15438 | MS.gene064917:CDS | 45.0% | |
| TCTTGAGAATGGCGTTGCTT+TGG | + | 43124:12406-12425 | MS.gene064917:CDS | 45.0% | |
| TGCGAGCAGATACACTCTTA+TGG | + | 43124:15034-15053 | MS.gene064917:intron | 45.0% | |
| TTGTACCGAGCAGTGCAAAT+CGG | - | 43124:13530-13549 | None:intergenic | 45.0% | |
| TTTCCTGTGTAGGCAACATC+GGG | + | 43124:12622-12641 | MS.gene064917:intron | 45.0% | |
| ! | ACAGGACTGCTTTCTAGAAG+TGG | - | 43124:14107-14126 | None:intergenic | 45.0% |
| ! | ATGACGCAAACGGGCTTATT+AGG | - | 43124:12528-12547 | None:intergenic | 45.0% |
| ! | CTGGTATGGATTGATGCAGT+GGG | + | 43124:13269-13288 | MS.gene064917:intron | 45.0% |
| ! | GCATGCAAGCTTTCTAAGGA+AGG | + | 43124:12661-12680 | MS.gene064917:CDS | 45.0% |
| ! | GGAAGCATGCACTTAGAAAG+TGG | - | 43124:12823-12842 | None:intergenic | 45.0% |
| ! | TACACCTGTGATGACGCAAA+CGG | - | 43124:12538-12557 | None:intergenic | 45.0% |
| !! | AGCCTGAATAGCTTTGAGGT+GGG | - | 43124:13443-13462 | None:intergenic | 45.0% |
| AAGTTCCAGCAAGCCTGTCT+TGG | + | 43124:15365-15384 | MS.gene064917:CDS | 50.0% | |
| ACTCACTTGTGCACTTGTGG+TGG | + | 43124:15059-15078 | MS.gene064917:intron | 50.0% | |
| AGCCTTCAGCTGTGACTCTA+GGG | - | 43124:13588-13607 | None:intergenic | 50.0% | |
| AGTTCCAGCAAGCCTGTCTT+GGG | + | 43124:15366-15385 | MS.gene064917:CDS | 50.0% | |
| CAAAGAATGCCACCCAAGAC+AGG | - | 43124:15381-15400 | None:intergenic | 50.0% | |
| CATCTACTCACCGAGCTAGT+AGG | + | 43124:14153-14172 | MS.gene064917:intron | 50.0% | |
| CCACTGCATCAATCCATACC+AGG | - | 43124:13271-13290 | None:intergenic | 50.0% | |
| CGCAGTCAGAGGATTCCAAT+AGG | - | 43124:15420-15439 | None:intergenic | 50.0% | |
| CTCACTTGTGCACTTGTGGT+GGG | + | 43124:15060-15079 | MS.gene064917:intron | 50.0% | |
| GATCATCCTGGGAGAAAGAG+TGG | - | 43124:14039-14058 | None:intergenic | 50.0% | |
| TACCCATCTGGCAAAGCTGT+CGG | - | 43124:14535-14554 | None:intergenic | 50.0% | |
| TACGCACCCCTCTCTTGTTA+AGG | + | 43124:14901-14920 | MS.gene064917:intron | 50.0% | |
| TAGCCTTCAGCTGTGACTCT+AGG | - | 43124:13589-13608 | None:intergenic | 50.0% | |
| TCACTTGTGCACTTGTGGTG+GGG | + | 43124:15061-15080 | MS.gene064917:intron | 50.0% | |
| TCAGTACTTCCCTGCAGCAA+TGG | + | 43124:13494-13513 | MS.gene064917:CDS | 50.0% | |
| TGCAAGGCAAAGCATGAGCA+TGG | - | 43124:13688-13707 | None:intergenic | 50.0% | |
| TGCATCAGTGTTGCAGATCC+TGG | + | 43124:15316-15335 | MS.gene064917:intron | 50.0% | |
| TGCCCACCTCAAAGCTATTC+AGG | + | 43124:13438-13457 | MS.gene064917:CDS | 50.0% | |
| ! | ACACCTGTGATGACGCAAAC+GGG | - | 43124:12537-12556 | None:intergenic | 50.0% |
| ! | ACTGAAGCGTCTACGCCTAT+TGG | + | 43124:15402-15421 | MS.gene064917:CDS | 50.0% |
| ! | AGCGAGTGTTGTGATTCGCA+AGG | + | 43124:15134-15153 | MS.gene064917:intron | 50.0% |
| ! | CCTGGTATGGATTGATGCAG+TGG | + | 43124:13268-13287 | MS.gene064917:intron | 50.0% |
| ! | GGAGGAGTATGCTCCTTGTT+GGG | - | 43124:14959-14978 | None:intergenic | 50.0% |
| ! | GGATTCCGATTTGCACTGCT+CGG | + | 43124:13522-13541 | MS.gene064917:CDS | 50.0% |
| ! | GGTCAGCCTGAATAGCTTTG+AGG | - | 43124:13447-13466 | None:intergenic | 50.0% |
| ! | TTCCCTGCAGCAATGGCTTT+TGG | + | 43124:13501-13520 | MS.gene064917:CDS | 50.0% |
| !! | CAGCCTGAATAGCTTTGAGG+TGG | - | 43124:13444-13463 | None:intergenic | 50.0% |
| AAGCCCGATGTTGCCTACAC+AGG | - | 43124:12628-12647 | None:intergenic | 55.0% | |
| AAGCCCGTTTGCGTCATCAC+AGG | + | 43124:12531-12550 | MS.gene064917:CDS | 55.0% | |
| ACTCACAGGCGGAGTAAGAG+CGG | - | 43124:15464-15483 | None:intergenic | 55.0% | |
| CACCGACAGCTTTGCCAGAT+GGG | + | 43124:14530-14549 | MS.gene064917:CDS | 55.0% | |
| GCCTTCAGCTGTGACTCTAG+GGG | - | 43124:13587-13606 | None:intergenic | 55.0% | |
| GGACGATGAAGACCTTGGGT+AGG | - | 43124:12499-12518 | None:intergenic | 55.0% | |
| GGTAGTTGTAGCTTCAGGGG+AGG | - | 43124:14977-14996 | None:intergenic | 55.0% | |
| GGTGCTTCATTGCGTGGTCT+AGG | + | 43124:13154-13173 | MS.gene064917:intron | 55.0% | |
| TCCCCTAGAGTCACAGCTGA+AGG | + | 43124:13583-13602 | MS.gene064917:CDS | 55.0% | |
| TGTGTAGGCAACATCGGGCT+TGG | + | 43124:12627-12646 | MS.gene064917:intron | 55.0% | |
| ! | GGGAGGAGTATGCTCCTTGT+TGG | - | 43124:14960-14979 | None:intergenic | 55.0% |
| CCACCGACAGCTTTGCCAGA+TGG | + | 43124:14529-14548 | MS.gene064917:CDS | 60.0% | |
| CCATCTGGCAAAGCTGTCGG+TGG | - | 43124:14532-14551 | None:intergenic | 60.0% | |
| GGAATCGTTCCCGCAGTCAG+AGG | - | 43124:15431-15450 | None:intergenic | 60.0% | |
| TCCAGCAAGCCTGTCTTGGG+TGG | + | 43124:15369-15388 | MS.gene064917:CDS | 60.0% | |
| GCCACCCAAGACAGGCTTGC+TGG | - | 43124:15373-15392 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43124 | gene | 12342 | 15664 | 12342 | ID=MS.gene064917 |
| 43124 | mRNA | 12342 | 15664 | 12342 | ID=MS.gene064917.t1;Parent=MS.gene064917 |
| 43124 | exon | 12342 | 12554 | 12342 | ID=MS.gene064917.t1.exon1;Parent=MS.gene064917.t1 |
| 43124 | CDS | 12342 | 12554 | 12342 | ID=cds.MS.gene064917.t1;Parent=MS.gene064917.t1 |
| 43124 | exon | 12634 | 12700 | 12634 | ID=MS.gene064917.t1.exon2;Parent=MS.gene064917.t1 |
| 43124 | CDS | 12634 | 12700 | 12634 | ID=cds.MS.gene064917.t1;Parent=MS.gene064917.t1 |
| 43124 | exon | 13288 | 13316 | 13288 | ID=MS.gene064917.t1.exon3;Parent=MS.gene064917.t1 |
| 43124 | CDS | 13288 | 13316 | 13288 | ID=cds.MS.gene064917.t1;Parent=MS.gene064917.t1 |
| 43124 | exon | 13406 | 13614 | 13406 | ID=MS.gene064917.t1.exon4;Parent=MS.gene064917.t1 |
| 43124 | CDS | 13406 | 13614 | 13406 | ID=cds.MS.gene064917.t1;Parent=MS.gene064917.t1 |
| 43124 | exon | 14052 | 14170 | 14052 | ID=MS.gene064917.t1.exon5;Parent=MS.gene064917.t1 |
| 43124 | CDS | 14052 | 14170 | 14052 | ID=cds.MS.gene064917.t1;Parent=MS.gene064917.t1 |
| 43124 | exon | 14320 | 14391 | 14320 | ID=MS.gene064917.t1.exon6;Parent=MS.gene064917.t1 |
| 43124 | CDS | 14320 | 14391 | 14320 | ID=cds.MS.gene064917.t1;Parent=MS.gene064917.t1 |
| 43124 | exon | 14501 | 14576 | 14501 | ID=MS.gene064917.t1.exon7;Parent=MS.gene064917.t1 |
| 43124 | CDS | 14501 | 14576 | 14501 | ID=cds.MS.gene064917.t1;Parent=MS.gene064917.t1 |
| 43124 | exon | 15324 | 15477 | 15324 | ID=MS.gene064917.t1.exon8;Parent=MS.gene064917.t1 |
| 43124 | CDS | 15324 | 15477 | 15324 | ID=cds.MS.gene064917.t1;Parent=MS.gene064917.t1 |
| 43124 | exon | 15551 | 15664 | 15551 | ID=MS.gene064917.t1.exon9;Parent=MS.gene064917.t1 |
| 43124 | CDS | 15551 | 15664 | 15551 | ID=cds.MS.gene064917.t1;Parent=MS.gene064917.t1 |
| Gene Sequence |
| Protein sequence |
