AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065205


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065205.t1 MTR_8g471160 94.416 197 11 0 1 197 1 197 3.16e-132 375
MS.gene065205.t1 MTR_8g471160 91.096 146 13 0 1 146 1 146 1.24e-89 265
MS.gene065205.t1 MTR_4g060990 33.862 189 116 4 8 191 5 189 3.39e-19 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065205.t1 AT5G10480 69.543 197 60 0 1 197 1 197 4.72e-97 286
MS.gene065205.t1 AT5G10480 66.505 206 60 1 1 197 1 206 8.28e-94 278
MS.gene065205.t1 AT5G10480 72.515 171 47 0 27 197 2 172 1.10e-87 261
MS.gene065205.t1 AT5G59770 35.503 169 107 2 5 172 1 168 2.17e-21 91.3

Find 63 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATTCTTCATGGTTTATT+TGG 0.192712 8.1:-36310408 MS.gene065205:intron
TAACTTCAATAGTGGAATTT+TGG 0.199701 8.1:-36307471 MS.gene065205:CDS
CCTTTCATGTATAGAGGAAT+AGG 0.300882 8.1:-36307365 MS.gene065205:intron
AATTTCAACTTCTGCAATCT+AGG 0.302711 8.1:-36307514 MS.gene065205:CDS
TTCGGACTTAAAGAGGCTTT+TGG 0.313571 8.1:-36309336 MS.gene065205:CDS
TTAGGTGATGGCAGCAATAT+TGG 0.347374 8.1:-36307575 MS.gene065205:CDS
TGAGGCAATGTTGCTGATAT+TGG 0.352785 8.1:+36310286 None:intergenic
ATTATTCGCTATTCTTTCTT+CGG 0.357374 8.1:-36309354 MS.gene065205:CDS
TATTGCCTTGCCATTCATAA+AGG 0.363991 8.1:-36309131 MS.gene065205:intron
TCAAACTGCTGCTATATTAG+AGG 0.378417 8.1:-36310585 MS.gene065205:intron
TTTCAAAATCCTTGTCCGTT+TGG 0.383222 8.1:-36307288 MS.gene065205:CDS
ATGGTGTTATAGATTCTTCA+TGG 0.397861 8.1:-36310417 MS.gene065205:intron
TTTGAAGACATTGAATGAAA+TGG 0.400918 8.1:-36310654 MS.gene065205:CDS
AAAATCTTTACCTTTATGAA+TGG 0.403114 8.1:+36309121 None:intergenic
AAAAGCTTTAACTTCAATAG+TGG 0.404689 8.1:-36307479 MS.gene065205:CDS
AATGAAGAGTTCCATGTATT+CGG 0.405471 8.1:+36308600 None:intergenic
CATCCTGATGCAATACTTCT+CGG 0.424986 8.1:+36308623 None:intergenic
TTCTTTCTTCGGACTTAAAG+AGG 0.440816 8.1:-36309343 MS.gene065205:CDS
TAACTAAGCAGCCTTTGCTT+TGG 0.445467 8.1:+36308379 None:intergenic
CTTTCATGTATAGAGGAATA+GGG 0.445511 8.1:-36307364 MS.gene065205:intron
GCTCGGCAGTTGCGTGGTAT+CGG 0.448854 8.1:-36307340 MS.gene065205:CDS
TTGAAGACATTGAATGAAAT+GGG 0.454135 8.1:-36310653 MS.gene065205:CDS
AATCCTTGTCCGTTTGGCTC+CGG 0.470722 8.1:-36307282 MS.gene065205:CDS
TCAGCAACATTGCCTCAGAT+TGG 0.480235 8.1:-36310280 MS.gene065205:CDS
CGGTAAAGTTGTAAAGAGAA+AGG 0.488047 8.1:+36310810 None:intergenic
CATTGCCTCAGATTGGTTCA+AGG 0.488154 8.1:-36310273 MS.gene065205:CDS
AACTTACCATCCAAATAAAA+CGG 0.489799 8.1:+36310790 None:intergenic
TTTGATGTAGTTGCAGCGGC+TGG 0.495961 8.1:-36307845 MS.gene065205:intron
TTACCTTGCAATTGTTTCGT+TGG 0.499336 8.1:-36308568 MS.gene065205:CDS
ACTTCACTGCTTATGCCTGT+TGG 0.506216 8.1:+36309166 None:intergenic
GCATCAGGATGCCGAATACA+TGG 0.506249 8.1:-36308611 MS.gene065205:CDS
CATCCGAGAAGTATTGCATC+AGG 0.510272 8.1:-36308626 MS.gene065205:CDS
CTTTACCTTTATGAATGGCA+AGG 0.511048 8.1:+36309126 None:intergenic
TGAGCTCCCTACTTATCAGC+TGG 0.511780 8.1:-36309844 MS.gene065205:CDS
AGCAGCCTTTGCTTTGGCGA+GGG 0.526129 8.1:+36308385 None:intergenic
TGATAGACCAGCTGATAAGT+AGG 0.527389 8.1:+36309837 None:intergenic
CTAAGCCACAAAAGCCATGA+TGG 0.533657 8.1:+36309306 None:intergenic
GAGCTTTGTTTGAAAGCAGA+GGG 0.535549 8.1:-36307782 MS.gene065205:CDS
TTGATTTCACAGTTAGGTGA+TGG 0.539821 8.1:-36307587 MS.gene065205:intron
AGGTCAAGTTCAGTTGGTCT+CGG 0.540033 8.1:-36307819 MS.gene065205:CDS
ACAGGCATAAGCAGTGAAGT+TGG 0.550134 8.1:-36309163 MS.gene065205:CDS
TAAGCCACAAAAGCCATGAT+GGG 0.551078 8.1:+36309307 None:intergenic
AGGAACATCAACTACAACTC+CGG 0.559146 8.1:+36307263 None:intergenic
ACTACAACTCCGGAGCCAAA+CGG 0.562226 8.1:+36307273 None:intergenic
TCTGCAATCTAGGCAATCCA+TGG 0.564052 8.1:-36307504 MS.gene065205:CDS
TTTGAAAGCAGAGGGAATGT+TGG 0.564507 8.1:-36307774 MS.gene065205:intron
CTGCAATCTAGGCAATCCAT+GGG 0.583236 8.1:-36307503 MS.gene065205:CDS
AAGCAGCCTTTGCTTTGGCG+AGG 0.584431 8.1:+36308384 None:intergenic
GTAGTTGCAGCGGCTGGTGT+AGG 0.585814 8.1:-36307839 MS.gene065205:intron
TGAGCTTTGTTTGAAAGCAG+AGG 0.587518 8.1:-36307783 MS.gene065205:CDS
TAGGGTGCTCGGCAGTTGCG+TGG 0.589377 8.1:-36307346 MS.gene065205:CDS
GATAGACCAGCTGATAAGTA+GGG 0.589970 8.1:+36309838 None:intergenic
GTATAGAGGAATAGGGTGCT+CGG 0.591503 8.1:-36307357 MS.gene065205:intron
TGGTGTAGGTCAAGTTCAGT+TGG 0.592979 8.1:-36307825 MS.gene065205:CDS
GAAAGCCCTCGCCAAAGCAA+AGG 0.599576 8.1:-36308390 MS.gene065205:CDS
ACTCCGGAGCCAAACGGACA+AGG 0.605372 8.1:+36307279 None:intergenic
TTGCCAACGAAACAATTGCA+AGG 0.649609 8.1:+36308565 None:intergenic
AACAGCCTTGAACCAATCTG+AGG 0.659969 8.1:+36310268 None:intergenic
AGCATGTACGAGTACAAGTG+CGG 0.671048 8.1:+36308425 None:intergenic
AAGCCACAAAAGCCATGATG+GGG 0.673030 8.1:+36309308 None:intergenic
TGCAATCTAGGCAATCCATG+GGG 0.750384 8.1:-36307502 MS.gene065205:CDS
ACTCGTACATGCTTGCACAG+AGG 0.776747 8.1:-36308415 MS.gene065205:CDS
TATCAGCTGGTCTATCACCG+AGG 0.779454 8.1:-36309831 MS.gene065205:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACAAAAATCAGAAAA+TGG + chr8.1:36307787-36307806 None:intergenic 15.0%
!! AAAATTGCAAATTTGAATTT+AGG + chr8.1:36307984-36308003 None:intergenic 15.0%
!! AAATTGCAAATTTGAATTTA+GGG + chr8.1:36307983-36308002 None:intergenic 15.0%
!! AATTCTTCTAATTTACAATT+TGG - chr8.1:36307955-36307974 MS.gene065205:intron 15.0%
!! GATAGAAAAAATTCATAAAT+TGG + chr8.1:36307387-36307406 None:intergenic 15.0%
!! TGTAAATTAGAAGAATTAAA+GGG + chr8.1:36307952-36307971 None:intergenic 15.0%
!! TTGTAAATTAGAAGAATTAA+AGG + chr8.1:36307953-36307972 None:intergenic 15.0%
!!! TAAATTCAAATTTGCAATTT+TGG - chr8.1:36307983-36308002 MS.gene065205:intron 15.0%
!!! TAATTTTAATTATTTCAAGC+TGG - chr8.1:36310393-36310412 MS.gene065205:intron 15.0%
!!! TTTCACTAATTTATGTATTT+TGG - chr8.1:36307926-36307945 MS.gene065205:intron 15.0%
!!! TTTTGATAATTTAGTAATTG+AGG - chr8.1:36308060-36308079 MS.gene065205:intron 15.0%
!! AAAATCTTTACCTTTATGAA+TGG + chr8.1:36309001-36309020 None:intergenic 20.0%
!! AATCATACATTAACAAGATA+AGG + chr8.1:36309945-36309964 None:intergenic 20.0%
!! AATCATAGATTTAGAAACAA+AGG - chr8.1:36308101-36308120 MS.gene065205:intron 20.0%
!! AATTGCAAATTTGAATTTAG+GGG + chr8.1:36307982-36308001 None:intergenic 20.0%
!! AATTGTGAATGATACAAAAT+AGG - chr8.1:36308130-36308149 MS.gene065205:intron 20.0%
!! ATCATAGATTTAGAAACAAA+GGG - chr8.1:36308102-36308121 MS.gene065205:intron 20.0%
!! ATTCAGAGAAAATAAACAAA+AGG + chr8.1:36307604-36307623 None:intergenic 20.0%
!! ATTGAACAAAACAAACAAAT+TGG + chr8.1:36308376-36308395 None:intergenic 20.0%
!! CTTTATAGCATAAAATTGAA+AGG + chr8.1:36310008-36310027 None:intergenic 20.0%
!! TGTATGATTAAAATACAACA+TGG - chr8.1:36309956-36309975 MS.gene065205:intron 20.0%
!! TTATCTTGTTAATGTATCTA+GGG - chr8.1:36309876-36309895 MS.gene065205:intron 20.0%
!! TTCAGAGAAAATAAACAAAA+GGG + chr8.1:36307603-36307622 None:intergenic 20.0%
!! TTTATCTTGTTAATGTATCT+AGG - chr8.1:36309909-36309928 MS.gene065205:intron 20.0%
!!! AATTTCTTCATTGTGTTTTT+TGG - chr8.1:36307663-36307682 MS.gene065205:intron 20.0%
!!! AGTTTAAGTTAATTGTTCAA+TGG + chr8.1:36310177-36310196 None:intergenic 20.0%
!!! ATTAGATAATCTTGTTTATC+AGG - chr8.1:36309431-36309450 MS.gene065205:intron 20.0%
!!! ATTGATTTGATATGTTTTTC+AGG - chr8.1:36309470-36309489 MS.gene065205:intron 20.0%
!!! ATTGATTTTTTATCAAACAC+AGG - chr8.1:36309782-36309801 MS.gene065205:intron 20.0%
!!! ATTTCTTCATTGTGTTTTTT+GGG - chr8.1:36307664-36307683 MS.gene065205:intron 20.0%
!!! TGTTTCTAAATCTATGATTT+TGG + chr8.1:36308100-36308119 None:intergenic 20.0%
!!! TTGTTTTTTGAATTGATGAA+GGG - chr8.1:36307798-36307817 MS.gene065205:CDS 20.0%
!!! TTTGTTTTTTGAATTGATGA+AGG - chr8.1:36307797-36307816 MS.gene065205:CDS 20.0%
!!! TTTTGTATCATTCACAATTT+TGG + chr8.1:36308129-36308148 None:intergenic 20.0%
!!! TTTTTTTTGATTTCACAGTT+AGG - chr8.1:36310526-36310545 MS.gene065205:intron 20.0%
! AAATCAGACAATTTGAGAAA+TGG + chr8.1:36308012-36308031 None:intergenic 25.0%
! AACATTAAGCATTTAAGCAA+AGG + chr8.1:36307745-36307764 None:intergenic 25.0%
! AACTTACCATCCAAATAAAA+CGG + chr8.1:36307332-36307351 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+TGG + chr8.1:36309145-36309164 None:intergenic 25.0%
! AATCAGACAATTTGAGAAAT+GGG + chr8.1:36308011-36308030 None:intergenic 25.0%
! AATGATGAAATTCAATCAGT+TGG + chr8.1:36309661-36309680 None:intergenic 25.0%
! ACACGAAATGGTAAAATAAA+TGG + chr8.1:36308551-36308570 None:intergenic 25.0%
! ATGACACAACAGAAAATAAA+AGG + chr8.1:36308177-36308196 None:intergenic 25.0%
! ATTATAAACAACACATCACA+AGG + chr8.1:36309336-36309355 None:intergenic 25.0%
! ATTATTCGCTATTCTTTCTT+CGG - chr8.1:36308765-36308784 MS.gene065205:intron 25.0%
! CAAATCAATAACATGAAATC+AGG + chr8.1:36309459-36309478 None:intergenic 25.0%
! CCTGCATAAATTTGAAAAAA+TGG + chr8.1:36307425-36307444 None:intergenic 25.0%
! CTTATCTTGTTAATGTATCT+AGG - chr8.1:36309875-36309894 MS.gene065205:intron 25.0%
! GAAAATAAACGTTGGAAATA+GGG + chr8.1:36309625-36309644 None:intergenic 25.0%
! TAGATTCTTCATGGTTTATT+TGG - chr8.1:36307711-36307730 MS.gene065205:intron 25.0%
! TCATAGATTTAGAAACAAAG+GGG - chr8.1:36308103-36308122 MS.gene065205:intron 25.0%
! TTAAAGATTCTAAACCTGTT+TGG + chr8.1:36309303-36309322 None:intergenic 25.0%
! TTGAAGACATTGAATGAAAT+GGG - chr8.1:36307466-36307485 MS.gene065205:CDS 25.0%
! TTTGAAGACATTGAATGAAA+TGG - chr8.1:36307465-36307484 MS.gene065205:CDS 25.0%
!! AAAAGCTTTAACTTCAATAG+TGG - chr8.1:36310640-36310659 MS.gene065205:CDS 25.0%
!! AATGTCTTCGAATTTTATTG+TGG - chr8.1:36307621-36307640 MS.gene065205:intron 25.0%
!! ACTATAATGCTAAACCTTTT+TGG - chr8.1:36308592-36308611 MS.gene065205:CDS 25.0%
!! ACTTTCTTTTCAACTTTTCT+TGG + chr8.1:36308473-36308492 None:intergenic 25.0%
!! ATGTCTTCGAATTTTATTGT+GGG - chr8.1:36307622-36307641 MS.gene065205:intron 25.0%
!! CTTTCTTTTCAACTTTTCTT+GGG + chr8.1:36308472-36308491 None:intergenic 25.0%
!!! CCATTTTTTCAAATTTATGC+AGG - chr8.1:36307422-36307441 MS.gene065205:intron 25.0%
!!! GTTGTTTTCATAAGCTATTT+TGG + chr8.1:36309180-36309199 None:intergenic 25.0%
!!! TAACTTCAATAGTGGAATTT+TGG - chr8.1:36310648-36310667 MS.gene065205:CDS 25.0%
!!! TACAACTTTACCGTTTTATT+TGG - chr8.1:36307319-36307338 MS.gene065205:CDS 25.0%
!!! TGTGTTGTTTATAATCAGAA+AGG - chr8.1:36309341-36309360 MS.gene065205:CDS 25.0%
AAATTGGAGTAACATGTAGA+TGG + chr8.1:36308360-36308379 None:intergenic 30.0%
AACTTAAACTGCCAAGTTTA+TGG - chr8.1:36310187-36310206 MS.gene065205:intron 30.0%
AATGAAGAGTTCCATGTATT+CGG + chr8.1:36309522-36309541 None:intergenic 30.0%
AATGTTGGGAAAATAAACGT+TGG + chr8.1:36309633-36309652 None:intergenic 30.0%
AATTTCAACTTCTGCAATCT+AGG - chr8.1:36310605-36310624 MS.gene065205:CDS 30.0%
ACACAATTTCAAACACGAAA+TGG + chr8.1:36308563-36308582 None:intergenic 30.0%
AGCTAATCATAAATCAGTCA+TGG + chr8.1:36309396-36309415 None:intergenic 30.0%
AGTAATTGAGGACCAAAATT+GGG - chr8.1:36308072-36308091 MS.gene065205:intron 30.0%
ATATCATGAAAAACTTGCCT+CGG + chr8.1:36308308-36308327 None:intergenic 30.0%
ATCAGACAATTTGAGAAATG+GGG + chr8.1:36308010-36308029 None:intergenic 30.0%
ATTTAGCTGTTTATCCAAAC+AGG - chr8.1:36309286-36309305 MS.gene065205:intron 30.0%
CTCATAGTTTATGACATTCA+AGG + chr8.1:36308666-36308685 None:intergenic 30.0%
CTTTCATGTATAGAGGAATA+GGG - chr8.1:36310755-36310774 MS.gene065205:intron 30.0%
GCAAGCTGCAATAAAAATAT+TGG + chr8.1:36308522-36308541 None:intergenic 30.0%
GGAAAATAAACGTTGGAAAT+AGG + chr8.1:36309626-36309645 None:intergenic 30.0%
GTTATTCCTTTCATGTATAG+AGG - chr8.1:36310748-36310767 MS.gene065205:intron 30.0%
GTTTGCAGTGCAAAATAATT+TGG - chr8.1:36310087-36310106 MS.gene065205:intron 30.0%
TAGTAATTGAGGACCAAAAT+TGG - chr8.1:36308071-36308090 MS.gene065205:intron 30.0%
TATATATACATGTCATGTCC+TGG - chr8.1:36309810-36309829 MS.gene065205:intron 30.0%
TGAATTTCATCATTCTATGC+AGG - chr8.1:36309667-36309686 MS.gene065205:intron 30.0%
TGATTAAGAAATTCAAGCTG+CGG - chr8.1:36310724-36310743 MS.gene065205:intron 30.0%
TGTGAATGATACAAAATAGG+AGG - chr8.1:36308133-36308152 MS.gene065205:intron 30.0%
TTATGACATTCAAGGATTGT+TGG + chr8.1:36308658-36308677 None:intergenic 30.0%
! ACTTTGGATTGTCTCATTTT+AGG - chr8.1:36309053-36309072 MS.gene065205:intron 30.0%
! ATAATCAGAAAGGTGCAATA+AGG - chr8.1:36309351-36309370 MS.gene065205:CDS 30.0%
! TTCGTGTTTGAAATTGTGTA+TGG - chr8.1:36308564-36308583 MS.gene065205:CDS 30.0%
!! AAGCTATTTTGGAGAGTTTA+TGG + chr8.1:36309169-36309188 None:intergenic 30.0%
!! AATTACCTTTAAGACCTGTT+TGG - chr8.1:36309030-36309049 MS.gene065205:intron 30.0%
!! ATGGTGTTATAGATTCTTCA+TGG - chr8.1:36307702-36307721 MS.gene065205:intron 30.0%
!! TCTGTTGTGTCATTTAATTC+AGG - chr8.1:36308184-36308203 MS.gene065205:intron 30.0%
!!! ACTTTACCGTTTTATTTGGA+TGG - chr8.1:36307323-36307342 MS.gene065205:CDS 30.0%
!!! TCTCATTTTAGGTTATCTAC+TGG - chr8.1:36309064-36309083 MS.gene065205:intron 30.0%
!!! TTCATTGTGTTTTTTGGGTA+TGG - chr8.1:36307669-36307688 MS.gene065205:intron 30.0%
!!! TTCTTAGTTTTGTATCCAAC+AGG - chr8.1:36308938-36308957 MS.gene065205:intron 30.0%
!!! TTGTGTTTTTAGAGATTCCT+TGG - chr8.1:36310803-36310822 MS.gene065205:CDS 30.0%
AAAGTCCAAACAGGTCTTAA+AGG + chr8.1:36309038-36309057 None:intergenic 35.0%
AACTCTTGTGTCTCATTAAG+AGG - chr8.1:36310043-36310062 MS.gene065205:intron 35.0%
AATCAGTTGGAGCATAATGT+TGG + chr8.1:36309648-36309667 None:intergenic 35.0%
AATGAAACGCTAAGCCAAAA+AGG + chr8.1:36308609-36308628 None:intergenic 35.0%
AGAATGTGCTATATCTGCAA+AGG + chr8.1:36308922-36308941 None:intergenic 35.0%
ATCAGTTGGAGCATAATGTT+GGG + chr8.1:36309647-36309666 None:intergenic 35.0%
CCTATTCCTCTATACATGAA+AGG + chr8.1:36310757-36310776 None:intergenic 35.0%
CCTTTCATGTATAGAGGAAT+AGG - chr8.1:36310754-36310773 MS.gene065205:intron 35.0%
CGGTAAAGTTGTAAAGAGAA+AGG + chr8.1:36307312-36307331 None:intergenic 35.0%
CTTTACCTTTATGAATGGCA+AGG + chr8.1:36308996-36309015 None:intergenic 35.0%
GAGTCCTGAATATCAATTTG+TGG - chr8.1:36310209-36310228 MS.gene065205:intron 35.0%
GTAATTGAGGACCAAAATTG+GGG - chr8.1:36308073-36308092 MS.gene065205:intron 35.0%
GTGTATTTAGGAGTTGTATG+TGG - chr8.1:36310369-36310388 MS.gene065205:intron 35.0%
TATTCAGGACTCCATAAACT+TGG + chr8.1:36310201-36310220 None:intergenic 35.0%
TATTGCCTTGCCATTCATAA+AGG - chr8.1:36308988-36309007 MS.gene065205:intron 35.0%
TCAAACTGCTGCTATATTAG+AGG - chr8.1:36307534-36307553 MS.gene065205:CDS 35.0%
TCTTCCTAGATACATACATG+CGG + chr8.1:36309849-36309868 None:intergenic 35.0%
TTACCTTGCAATTGTTTCGT+TGG - chr8.1:36309551-36309570 MS.gene065205:intron 35.0%
TTCTTTCTTCGGACTTAAAG+AGG - chr8.1:36308776-36308795 MS.gene065205:intron 35.0%
TTGAAATTTGTGTTCACCTC+AGG + chr8.1:36307905-36307924 None:intergenic 35.0%
TTGATTTCACAGTTAGGTGA+TGG - chr8.1:36310532-36310551 MS.gene065205:intron 35.0%
TTTCAAAATCCTTGTCCGTT+TGG - chr8.1:36310831-36310850 MS.gene065205:CDS 35.0%
! AACTTTTCTTGGGAAAACGT+AGG + chr8.1:36308462-36308481 None:intergenic 35.0%
! GAAAGGTAGAGTCTTTTCAT+AGG + chr8.1:36307295-36307314 None:intergenic 35.0%
! GAAATTGCCTTTTCAGTAAC+AGG - chr8.1:36310464-36310483 MS.gene065205:intron 35.0%
! TTATGATTAGCTCTCTCTAC+TGG - chr8.1:36309404-36309423 MS.gene065205:intron 35.0%
! TTTAAGACCTGTTTGGACTT+TGG - chr8.1:36309037-36309056 MS.gene065205:intron 35.0%
! TTTAGCAGGACTGGTATTTA+TGG - chr8.1:36310436-36310455 MS.gene065205:intron 35.0%
!! ATAGTGGAATTTTGGTAGCA+AGG - chr8.1:36310656-36310675 MS.gene065205:CDS 35.0%
!! ATGATTTTGGTCCCCAATTT+TGG + chr8.1:36308087-36308106 None:intergenic 35.0%
!! GCTGCTATATTAGAGGTATT+TGG - chr8.1:36307541-36307560 MS.gene065205:CDS 35.0%
!!! AACCTTTTCTAGCTGATTTG+AGG - chr8.1:36310693-36310712 MS.gene065205:intron 35.0%
!!! AGGATTTTGAAATACGACCA+AGG + chr8.1:36310823-36310842 None:intergenic 35.0%
!!! TTCAAGGCTGTTTTTGGTAT+GGG - chr8.1:36307862-36307881 MS.gene065205:intron 35.0%
AAGTACTACGTAACAGACAC+TGG + chr8.1:36308421-36308440 None:intergenic 40.0%
AGACAATCCAAAGTCCAAAC+AGG + chr8.1:36309047-36309066 None:intergenic 40.0%
AGCAGTTTGAGCAAAAAGCA+AGG + chr8.1:36307524-36307543 None:intergenic 40.0%
CATCCTGATGCAATACTTCT+CGG + chr8.1:36309499-36309518 None:intergenic 40.0%
CCAGCCACAAATTGATATTC+AGG + chr8.1:36310216-36310235 None:intergenic 40.0%
CCTGAATATCAATTTGTGGC+TGG - chr8.1:36310213-36310232 MS.gene065205:intron 40.0%
CTCCTCAAATCAGCTAGAAA+AGG + chr8.1:36310698-36310717 None:intergenic 40.0%
GATAGACCAGCTGATAAGTA+GGG + chr8.1:36308284-36308303 None:intergenic 40.0%
GCAGTTTGAGCAAAAAGCAA+GGG + chr8.1:36307523-36307542 None:intergenic 40.0%
GGGAATGTTGGTGTGTATTT+AGG - chr8.1:36310357-36310376 MS.gene065205:intron 40.0%
TAACTAAGCAGCCTTTGCTT+TGG + chr8.1:36309743-36309762 None:intergenic 40.0%
TAAGCCACAAAAGCCATGAT+GGG + chr8.1:36308815-36308834 None:intergenic 40.0%
TATTTCAAGCTGGCAACAAC+CGG - chr8.1:36310403-36310422 MS.gene065205:intron 40.0%
TGAGGCAATGTTGCTGATAT+TGG + chr8.1:36307836-36307855 None:intergenic 40.0%
TGATAGACCAGCTGATAAGT+AGG + chr8.1:36308285-36308304 None:intergenic 40.0%
TTGCCAACGAAACAATTGCA+AGG + chr8.1:36309557-36309576 None:intergenic 40.0%
TTTGAAAGCAGAGGGAATGT+TGG - chr8.1:36310345-36310364 MS.gene065205:intron 40.0%
! CTTTTGGATTTTCCCCATCA+TGG - chr8.1:36308799-36308818 MS.gene065205:intron 40.0%
! GAAGTTAAAGCTTTTCCCCA+TGG + chr8.1:36310635-36310654 None:intergenic 40.0%
! GTCATGTCCTGGTTTGAAAT+TGG - chr8.1:36309821-36309840 MS.gene065205:intron 40.0%
! TTAGGTGATGGCAGCAATAT+TGG - chr8.1:36310544-36310563 MS.gene065205:intron 40.0%
! TTCGGACTTAAAGAGGCTTT+TGG - chr8.1:36308783-36308802 MS.gene065205:intron 40.0%
!! GAGCTTTGTTTGAAAGCAGA+GGG - chr8.1:36310337-36310356 MS.gene065205:intron 40.0%
!! GATTGGTTCAAGGCTGTTTT+TGG - chr8.1:36307856-36307875 MS.gene065205:intron 40.0%
!! TGAGCTTTGTTTGAAAGCAG+AGG - chr8.1:36310336-36310355 MS.gene065205:intron 40.0%
!!! GTTCAAGGCTGTTTTTGGTA+TGG - chr8.1:36307861-36307880 MS.gene065205:intron 40.0%
!!! TCAAGGCTGTTTTTGGTATG+GGG - chr8.1:36307863-36307882 MS.gene065205:intron 40.0%
!!! TGGTTTTGATGTAGTTGCAG+CGG - chr8.1:36310270-36310289 MS.gene065205:CDS 40.0%
AAAAATGCTTCGTGCATGCC+TGG + chr8.1:36309588-36309607 None:intergenic 45.0%
AACAGCCTTGAACCAATCTG+AGG + chr8.1:36307854-36307873 None:intergenic 45.0%
AAGCCACAAAAGCCATGATG+GGG + chr8.1:36308814-36308833 None:intergenic 45.0%
ACAGGCATAAGCAGTGAAGT+TGG - chr8.1:36308956-36308975 MS.gene065205:intron 45.0%
ACTTCACTGCTTATGCCTGT+TGG + chr8.1:36308956-36308975 None:intergenic 45.0%
AGCATGTACGAGTACAAGTG+CGG + chr8.1:36309697-36309716 None:intergenic 45.0%
CTAAGCCACAAAAGCCATGA+TGG + chr8.1:36308816-36308835 None:intergenic 45.0%
CTGCAATCTAGGCAATCCAT+GGG - chr8.1:36310616-36310635 MS.gene065205:CDS 45.0%
GGATCCGCATGTATGTATCT+AGG - chr8.1:36309842-36309861 MS.gene065205:CDS 45.0%
TCAGCAACATTGCCTCAGAT+TGG - chr8.1:36307839-36307858 MS.gene065205:intron 45.0%
TCCATCACATGTGCATTGTG+AGG - chr8.1:36308032-36308051 MS.gene065205:intron 45.0%
TCTGCAATCTAGGCAATCCA+TGG - chr8.1:36310615-36310634 MS.gene065205:CDS 45.0%
TGCAATCTAGGCAATCCATG+GGG - chr8.1:36310617-36310636 MS.gene065205:CDS 45.0%
TGCGGATCCAATTTCAAACC+AGG + chr8.1:36309831-36309850 None:intergenic 45.0%
TGGTGTAGGTCAAGTTCAGT+TGG - chr8.1:36310294-36310313 MS.gene065205:CDS 45.0%
! AGGTCAAGTTCAGTTGGTCT+CGG - chr8.1:36310300-36310319 MS.gene065205:CDS 45.0%
! CATCATGGCTTTTGTGGCTT+AGG - chr8.1:36308814-36308833 MS.gene065205:intron 45.0%
! CATCTTGTGGAGTTTTCCTG+AGG - chr8.1:36307886-36307905 MS.gene065205:intron 45.0%
! CATTGCCTCAGATTGGTTCA+AGG - chr8.1:36307846-36307865 MS.gene065205:intron 45.0%
! GTATAGAGGAATAGGGTGCT+CGG - chr8.1:36310762-36310781 MS.gene065205:intron 45.0%
! TTTCCCCATCATGGCTTTTG+TGG - chr8.1:36308808-36308827 MS.gene065205:intron 45.0%
!! CATCCGAGAAGTATTGCATC+AGG - chr8.1:36309493-36309512 MS.gene065205:intron 45.0%
!! GGTGTTAACCTGTGTTGCTT+TGG - chr8.1:36310234-36310253 MS.gene065205:CDS 45.0%
!! TTTTGGTATGGGGCATCTTG+TGG - chr8.1:36307873-36307892 MS.gene065205:intron 45.0%
!!! TTAATTTTATAATTTGTTAT+AGG - chr8.1:36309225-36309244 MS.gene065205:intron 5.0%
ACAAGACGCCAAAGCAACAC+AGG + chr8.1:36310245-36310264 None:intergenic 50.0%
ACTCGTACATGCTTGCACAG+AGG - chr8.1:36309704-36309723 MS.gene065205:intron 50.0%
GCATCAGGATGCCGAATACA+TGG - chr8.1:36309508-36309527 MS.gene065205:intron 50.0%
GCCTCACAATGCACATGTGA+TGG + chr8.1:36308036-36308055 None:intergenic 50.0%
GCCTGCACCTGTTACTGAAA+AGG + chr8.1:36310474-36310493 None:intergenic 50.0%
TCGTTGGCAATCTACGTTCC+AGG - chr8.1:36309567-36309586 MS.gene065205:intron 50.0%
TGAGCTCCCTACTTATCAGC+TGG - chr8.1:36308275-36308294 MS.gene065205:intron 50.0%
TGGGTATGGCGTTGTATGCA+TGG - chr8.1:36307683-36307702 MS.gene065205:intron 50.0%
TTTGATGTAGTTGCAGCGGC+TGG - chr8.1:36310274-36310293 MS.gene065205:CDS 50.0%
! AATCCTTGTCCGTTTGGCTC+CGG - chr8.1:36310837-36310856 MS.gene065205:CDS 50.0%
! ACAGGTGCAGGCGTATTTTC+TGG - chr8.1:36310482-36310501 MS.gene065205:intron 50.0%
! GCCTTTTCAGTAACAGGTGC+AGG - chr8.1:36310470-36310489 MS.gene065205:intron 50.0%
! TATCAGCTGGTCTATCACCG+AGG - chr8.1:36308288-36308307 MS.gene065205:intron 50.0%
!! GCGTATTTTCTGGTGCAGCA+GGG - chr8.1:36310492-36310511 MS.gene065205:intron 50.0%
AAGCAGCCTTTGCTTTGGCG+AGG + chr8.1:36309738-36309757 None:intergenic 55.0%
AGCAGCCTTTGCTTTGGCGA+GGG + chr8.1:36309737-36309756 None:intergenic 55.0%
CCTGCTAAAGCCATTGCCTC+CGG + chr8.1:36310425-36310444 None:intergenic 55.0%
GAAAGCCCTCGCCAAAGCAA+AGG - chr8.1:36309729-36309748 MS.gene065205:intron 55.0%
GCTTTGGCGTCTTGTGATCG+TGG - chr8.1:36310250-36310269 MS.gene065205:CDS 55.0%
TTCAAGCTGGCAACAACCGG+AGG - chr8.1:36310406-36310425 MS.gene065205:intron 55.0%
!! GGCAATGGCTTTAGCAGGAC+TGG - chr8.1:36310427-36310446 MS.gene065205:intron 55.0%
!! GGCGTATTTTCTGGTGCAGC+AGG - chr8.1:36310491-36310510 MS.gene065205:intron 55.0%
ACTCCGGAGCCAAACGGACA+AGG + chr8.1:36310843-36310862 None:intergenic 60.0%
CTGGCAACAACCGGAGGCAA+TGG - chr8.1:36310412-36310431 MS.gene065205:intron 60.0%
GCTCGGCAGTTGCGTGGTAT+CGG - chr8.1:36310779-36310798 MS.gene065205:intron 60.0%
GTAGTTGCAGCGGCTGGTGT+AGG - chr8.1:36310280-36310299 MS.gene065205:CDS 60.0%
!! CCGGAGGCAATGGCTTTAGC+AGG - chr8.1:36310422-36310441 MS.gene065205:intron 60.0%
! TAGGGTGCTCGGCAGTTGCG+TGG - chr8.1:36310773-36310792 MS.gene065205:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 36307274 36310867 36307274 ID=MS.gene065205
chr8.1 mRNA 36307274 36310867 36307274 ID=MS.gene065205.t1;Parent=MS.gene065205
chr8.1 exon 36310797 36310867 36310797 ID=MS.gene065205.t1.exon1;Parent=MS.gene065205.t1
chr8.1 CDS 36310797 36310867 36310797 ID=cds.MS.gene065205.t1;Parent=MS.gene065205.t1
chr8.1 exon 36310586 36310697 36310586 ID=MS.gene065205.t1.exon2;Parent=MS.gene065205.t1
chr8.1 CDS 36310586 36310697 36310586 ID=cds.MS.gene065205.t1;Parent=MS.gene065205.t1
chr8.1 exon 36310409 36310427 36310409 ID=MS.gene065205.t1.exon3;Parent=MS.gene065205.t1
chr8.1 CDS 36310409 36310427 36310409 ID=cds.MS.gene065205.t1;Parent=MS.gene065205.t1
chr8.1 exon 36310234 36310322 36310234 ID=MS.gene065205.t1.exon4;Parent=MS.gene065205.t1
chr8.1 CDS 36310234 36310322 36310234 ID=cds.MS.gene065205.t1;Parent=MS.gene065205.t1
chr8.1 exon 36309832 36309885 36309832 ID=MS.gene065205.t1.exon5;Parent=MS.gene065205.t1
chr8.1 CDS 36309832 36309885 36309832 ID=cds.MS.gene065205.t1;Parent=MS.gene065205.t1
chr8.1 exon 36309306 36309376 36309306 ID=MS.gene065205.t1.exon6;Parent=MS.gene065205.t1
chr8.1 CDS 36309306 36309376 36309306 ID=cds.MS.gene065205.t1;Parent=MS.gene065205.t1
chr8.1 exon 36309132 36309213 36309132 ID=MS.gene065205.t1.exon7;Parent=MS.gene065205.t1
chr8.1 CDS 36309132 36309213 36309132 ID=cds.MS.gene065205.t1;Parent=MS.gene065205.t1
chr8.1 exon 36308560 36308649 36308560 ID=MS.gene065205.t1.exon8;Parent=MS.gene065205.t1
chr8.1 CDS 36308560 36308649 36308560 ID=cds.MS.gene065205.t1;Parent=MS.gene065205.t1
chr8.1 exon 36308383 36308452 36308383 ID=MS.gene065205.t1.exon9;Parent=MS.gene065205.t1
chr8.1 CDS 36308383 36308452 36308383 ID=cds.MS.gene065205.t1;Parent=MS.gene065205.t1
chr8.1 exon 36307775 36307857 36307775 ID=MS.gene065205.t1.exon10;Parent=MS.gene065205.t1
chr8.1 CDS 36307775 36307857 36307775 ID=cds.MS.gene065205.t1;Parent=MS.gene065205.t1
chr8.1 exon 36307464 36307597 36307464 ID=MS.gene065205.t1.exon11;Parent=MS.gene065205.t1
chr8.1 CDS 36307464 36307597 36307464 ID=cds.MS.gene065205.t1;Parent=MS.gene065205.t1
chr8.1 exon 36307274 36307373 36307274 ID=MS.gene065205.t1.exon12;Parent=MS.gene065205.t1
chr8.1 CDS 36307274 36307373 36307274 ID=cds.MS.gene065205.t1;Parent=MS.gene065205.t1
Gene Sequence

>MS.gene065205

ATGGCTGCTTCTGTTTCACCTATGAAAAGACTCTACCTTTCTCTTTACAACTTTACCGTTTTATTTGGATGGTAAGTTAATTCTCACTCATTCATTCATTCACTTGCTCACCAATTTATGAATTTTTTCTATCATTGTAATTTTAGATCCATTTTTTCAAATTTATGCAGGCTACAAGTTCTATTTCTTGTTTTGAAGACATTGAATGAAATGGGTCATCAACATGTTTACTCTGTTGTTGAAAAGCCCTTGCTTTTTGCTCAAACTGCTGCTATATTAGAGGTATTTGGTTCTAAAAGTTTTGATTTTTATCACTTTTTTAGACACCCTTTTGTTTATTTTCTCTGAATGTCTTCGAATTTTATTGTGGGTATATTTTGTTTATCTAAAATTTCTTCATTGTGTTTTTTGGGTATGGCGTTGTATGCATGGTGTTATAGATTCTTCATGGTTTATTTGGTGAGTAATCCTTTGCTTAAATGCTTAATGTTGATATAATTTGATATTTTGCCATTTTCTGATTTTTGTTTTTTGAATTGATGAAGGGATTGTGAAGTCTCCAATATCAGCAACATTGCCTCAGATTGGTTCAAGGCTGTTTTTGGTATGGGGCATCTTGTGGAGTTTTCCTGAGGTGAACACAAATTTCAATTTTCACTAATTTATGTATTTTGGCCCTTTAATTCTTCTAATTTACAATTTGGTCCCCTAAATTCAAATTTGCAATTTTGGTCCCCATTTCTCAAATTGTCTGATTTTCCATCACATGTGCATTGTGAGGCTGAATTTTGATAATTTAGTAATTGAGGACCAAAATTGGGGACCAAAATCATAGATTTAGAAACAAAGGGGCCAAAATTGTGAATGATACAAAATAGGAGGACTGAAACTATATTTAAGCCTTTTATTTTCTGTTGTGTCATTTAATTCAGGATTTTGTCATATTCTGTTATTGAAAATTTAGCACATCTTTGAATGACAGACTCAGACTCATTTTCTTGTGAGCTCCCTACTTATCAGCTGGTCTATCACCGAGGCAAGTTTTTCATGATATTGTTTTCTTGCTCACATTCAGCACTCACACCATCTACATGTTACTCCAATTTGTTTGTTTTGTTCAATATTAGCTGAAATAAATAAGTTGCCAGTGTCTGTTACGTAGTACTTATTAATCAAGTAACACTTCCTACGTTTTCCCAAGAAAAGTTGAAAAGAAAGTATTGATGAGAATTAACACTAAATTTTCCAATATTTTTATTGCAGCTTGCGCTTAACCATTTATTTTACCATTTCGTGTTTGAAATTGTGTATGGATTGAACTATAATGCTAAACCTTTTTGGCTTAGCGTTTCATTTTTGCTCTGTAATTTTTCTTTTGTTTCCAACAATCCTTGAATGTCATAAACTATGAGTGAAGTCACTGATTGAAAATGCAAGAAAAGCTTTAGTGAAGATCAATAGTTATAATCTTCTTTATTGTTATAATTTCAGATTATTCGCTATTCTTTCTTCGGACTTAAAGAGGCTTTTGGATTTTCCCCATCATGGCTTTTGTGGCTTAGGTATGAAATTTGAGTGTAAAGTCTTCTTCATGAAGTGTAGTATTGATAAATATTATTTTGCTCTTATATTGACTACAAATTTTCCTTTGCAGATATAGCACATTCTTAGTTTTGTATCCAACAGGCATAAGCAGTGAAGTTGGTTTGATTTATATTGCCTTGCCATTCATAAAGGTAAAGATTTTGAACATCAAAATTACCTTTAAGACCTGTTTGGACTTTGGATTGTCTCATTTTAGGTTATCTACTGGCATAAGCACTTGTGATATTATTTGAGAGAGCTTGTGTAAATAGCATATGATATGTCCATAAGTTGTTTTCAGCTTATTTCCATAAACTCTCCAAAATAGCTTATGAAAACAACTTACAGCTTCAGAAAATAGTTTCACTTAATTTTATAATTTGTTATAGGAGTAGCTTATACATAAGCGCTTATGCTATAAATGCTTAATTTAGCTGTTTATCCAAACAGGTTTAGAATCTTTAAAATATCTAAACCTTGTGATGTGTTGTTTATAATCAGAAAGGTGCAATAAGGAGAATCGTTGCTTGTTAGTCCATGACTGATTTATGATTAGCTCTCTCTACTGGATCTATTAGATAATCTTGTTTATCAGGAACCTGATTTCATGTTATTGATTTGATATGTTTTTCAGGCATCCGAGAAGTATTGCATCAGGATGCCGAATACATGGAACTCTTCATTCGATTACTTTTACCTTGCAATTGTTTCGTTGGCAATCTACGTTCCAGGCATGCACGAAGCATTTTTCTTACTACTATATTCCCTATTTCCAACGTTTATTTTCCCAACATTATGCTCCAACTGATTGAATTTCATCATTCTATGCAGGTAGTCCGCACTTGTACTCGTACATGCTTGCACAGAGGAAGAAAGCCCTCGCCAAAGCAAAGGCTGCTTAGTTAAACATCATTAGTATTTTTCATTGATTTTTTATCAAACACAGGATATGTATATATACATGTCATGTCCTGGTTTGAAATTGGATCCGCATGTATGTATCTAGGAAGAAAATTGCTTATCTTGTTAATGTATCTAGGGAAAAAATTTGTTTATCTTGTTAATGTATCTAGGAAAAACAATTCCTTATCTTGTTAATGTATGATTAAAATACAACATGGCAGATATATATGATCTGTTATTTTGTCCTTTCAATTTTATGCTATAAAGCAACTTTCTATAGTTAACTCTTGTGTCTCATTAAGAGGCAACATGAAACACAGTTCATTGTTTGCAGTGCAAAATAATTTGGCAAAGAAATAACATTAGCAACTAAAAGTGCGTGAAATGAAATAAGTATAAATTTGATGCGAAAACCATTGAACAATTAACTTAAACTGCCAAGTTTATGGAGTCCTGAATATCAATTTGTGGCTGGTGTTAACCTGTGTTGCTTTGGCGTCTTGTGATCGTGGTTTTGATGTAGTTGCAGCGGCTGGTGTAGGTCAAGTTCAGTTGGTCTCGGCTAAATACAAAGTTGAGCTTTGTTTGAAAGCAGAGGGAATGTTGGTGTGTATTTAGGAGTTGTATGTGGTTAATTTTAATTATTTCAAGCTGGCAACAACCGGAGGCAATGGCTTTAGCAGGACTGGTATTTATGGCATTTGAAATTGCCTTTTCAGTAACAGGTGCAGGCGTATTTTCTGGTGCAGCAGGGATTTTCTTTCATTTTTTTTGATTTCACAGTTAGGTGATGGCAGCAATATTGGTACTGCAATTTCATGCTGCTTTCATCTTTGCGTGTTAAAATTTCAACTTCTGCAATCTAGGCAATCCATGGGGAAAAGCTTTAACTTCAATAGTGGAATTTTGGTAGCAAGGTGCATTGATCTGAGAACCTTTTCTAGCTGATTTGAGGAGCACAATTGATTAAGAAATTCAAGCTGCGGTGTTATTCCTTTCATGTATAGAGGAATAGGGTGCTCGGCAGTTGCGTGGTATCGGATTGTGTTTTTAGAGATTCCTTGGTCGTATTTCAAAATCCTTGTCCGTTTGGCTCCGGAGTTGTAG

Protein sequence

>MS.gene065205.t1

MAASVSPMKRLYLSLYNFTVLFGWLQVLFLVLKTLNEMGHQHVYSVVEKPLLFAQTAAILEILHGLFGIVKSPISATLPQIGSRLFLVWGILWSFPETQTHFLVSSLLISWSITEIIRYSFFGLKEAFGFSPSWLLWLRYSTFLVLYPTGISSEVGLIYIALPFIKASEKYCIRMPNTWNSSFDYFYLAIVSLAIYVVRTCTRTCLHRGRKPSPKQRLLIAAAGVGQVQLVSAKYKVELCLKAEGMLLGDGSNIGTAISCCFHLCVLKFQLLQSRQSMGKSFNFNSGILVARGIGCSAVAWYRIVFLEIPWSYFKILVRLAPEL