AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056409


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056409.t1 MTR_4g068230 94.170 566 28 1 18 583 17 577 0.0 1087
MS.gene056409.t1 MTR_4g068240 80.763 577 83 3 1 576 44 593 0.0 922
MS.gene056409.t1 MTR_4g068270 85.333 525 77 0 52 576 3 527 0.0 918
MS.gene056409.t1 MTR_5g096240 71.622 74 21 0 327 400 1 74 1.21e-28 108
MS.gene056409.t1 MTR_4g117010 70.270 74 22 0 327 400 1 74 4.30e-26 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 145 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTTTGTGCTTCTAATA+TGG 0.174686 4.1:+33797687 None:intergenic
GAGAGCATTGGTAAGGTTTC+GGG 0.190923 4.1:-33796345 MS.gene056409:CDS
GTCCTTACAAATTGAATTTC+AGG 0.203917 4.1:-33799102 MS.gene056409:CDS
CTTTGATGATCCAAACAATT+TGG 0.249297 4.1:+33797660 None:intergenic
CTCTCGTATTTCCCATATTC+TGG 0.251716 4.1:+33797973 None:intergenic
TCCTCGAAATTGTCATTTAT+CGG 0.257328 4.1:-33797554 MS.gene056409:CDS
AGCATTGCACTGCCAGAATA+TGG 0.262779 4.1:-33797985 MS.gene056409:CDS
TGCTTCTAATATGGGTCCTT+GGG 0.268218 4.1:+33797696 None:intergenic
GCTTGGTTGAATACAGTATC+AGG 0.268880 4.1:+33796780 None:intergenic
GACTTGTGGTTTGGAGAGTT+TGG 0.285707 4.1:+33796859 None:intergenic
TTCCTTCCAATTCGAGTTCC+TGG 0.285931 4.1:+33797165 None:intergenic
TGGGAAGGTGAAAACCGTTT+TGG 0.293842 4.1:+33799216 None:intergenic
CTGTTAGATCAGCCCCTTGC+TGG 0.315011 4.1:+33796979 None:intergenic
TTGTCATTTATCGGCTATAT+CGG 0.328484 4.1:-33797545 MS.gene056409:CDS
AAGTCCTAGTTACCTGCTTT+TGG 0.329378 4.1:-33796841 MS.gene056409:CDS
TGGTGAACTGCTGCATTCAT+TGG 0.330055 4.1:+33797912 None:intergenic
ATCACTTATGCACTTAATCT+TGG 0.331813 4.1:-33796549 MS.gene056409:CDS
TCTGTTTGTGCTTCTAATAT+GGG 0.332552 4.1:+33797688 None:intergenic
GAAATCTTATATCGGGATTT+CGG 0.334553 4.1:-33796603 MS.gene056409:CDS
GTGCTTCTAATATGGGTCCT+TGG 0.338955 4.1:+33797695 None:intergenic
GGAGAGCATTGGTAAGGTTT+CGG 0.339213 4.1:-33796346 MS.gene056409:CDS
TGGTGGTGTCACTCCATTAC+AGG 0.339936 4.1:-33797455 MS.gene056409:intron
GGTGAACTGCTGCATTCATT+GGG 0.340579 4.1:+33797913 None:intergenic
CAGAAGAGGTTGTCAAGTTC+AGG 0.367195 4.1:+33797721 None:intergenic
ACAGGTATACCTGGAGGATA+TGG 0.369128 4.1:+33796309 None:intergenic
TGGGATCCAGGCAGCAATAA+TGG 0.370354 4.1:-33797608 MS.gene056409:CDS
ACAGAAGCAGCCAAATTGTT+TGG 0.373346 4.1:-33797670 MS.gene056409:CDS
GTCCTGAAATTCAATTTGTA+AGG 0.380572 4.1:+33799100 None:intergenic
AAGAAATTCTCCTGGTGAAC+AGG 0.381246 4.1:+33797582 None:intergenic
TCAGTAAGTACTCCGTCTTT+AGG 0.381995 4.1:+33796450 None:intergenic
TGCTATCCAGGAACTCGAAT+TGG 0.387817 4.1:-33797171 MS.gene056409:CDS
CACTTAATCTTGGAACTTGT+AGG 0.388613 4.1:-33796539 MS.gene056409:CDS
GCAGGTATTGAGTGCTATCC+AGG 0.393137 4.1:-33797183 MS.gene056409:intron
TAAAAGAAAAGTAACGATAA+AGG 0.393781 4.1:-33796367 MS.gene056409:CDS
GGTAACTAGGACTTGTGGTT+TGG 0.402917 4.1:+33796850 None:intergenic
CTAGCTCAGCCCTCCAGCAA+GGG 0.409492 4.1:-33796992 MS.gene056409:CDS
CCTTGCTGGAGGGCTGAGCT+AGG 0.410613 4.1:+33796993 None:intergenic
TTATTCCCGATAAAAGCCTT+TGG 0.411005 4.1:+33796508 None:intergenic
TTGTCGGAGGTACTACTTGT+GGG 0.411563 4.1:-33797627 MS.gene056409:CDS
GCCTCGATGACTCGACTCAT+TGG 0.419230 4.1:-33797778 MS.gene056409:CDS
GACAACTAAAGAAGAAAGTA+AGG 0.419635 4.1:+33796194 None:intergenic
CAGCACCTTCACTTCTTACA+TGG 0.424209 4.1:+33796238 None:intergenic
AAGCGGATGAAATCTTATAT+CGG 0.425695 4.1:-33796611 MS.gene056409:CDS
AGCCGCAATGGATCAATTGC+AGG 0.428507 4.1:+33796672 None:intergenic
AATAACTGAATCACCTGTAA+TGG 0.429007 4.1:+33797442 None:intergenic
ATCACTTCACCTACTTATCA+TGG 0.430365 4.1:-33797122 MS.gene056409:CDS
CTCTCAGTAATAACCTCACC+GGG 0.446512 4.1:+33796279 None:intergenic
CATTTGCTAATTTAATCGCT+TGG 0.448024 4.1:+33796763 None:intergenic
AGGCCACTCTGCTGAAGCTC+TGG 0.449434 4.1:+33797892 None:intergenic
GAATTGTTTGTGAACTCGTT+GGG 0.450040 4.1:-33796581 MS.gene056409:CDS
AGGTACTACTTGTGGGATCC+AGG 0.450761 4.1:-33797620 MS.gene056409:CDS
TTTATCAATTATTATGAGAC+CGG 0.454597 4.1:+33796150 None:intergenic
TCATCTATGCTGCACATGTC+AGG 0.461997 4.1:-33796918 MS.gene056409:CDS
TTCTCAAGCACTGAGATGCC+AGG 0.468757 4.1:+33796714 None:intergenic
GTTGAGATCTAGCAGCATCT+AGG 0.468914 4.1:+33796814 None:intergenic
ACCTCACCGGGGATCAATAC+AGG 0.471875 4.1:+33796291 None:intergenic
ATGGGAAATACGAGAGCGTT+GGG 0.472269 4.1:-33797966 MS.gene056409:CDS
GAAGCTCACGGTGCACATCT+AGG 0.481340 4.1:-33797032 MS.gene056409:CDS
AGCGGATGAAATCTTATATC+GGG 0.486805 4.1:-33796610 MS.gene056409:CDS
AGTGAAGGTGCTGATATTAG+TGG 0.488793 4.1:-33796228 MS.gene056409:CDS
CAATGGATCAATTGCAGGAA+TGG 0.490219 4.1:+33796677 None:intergenic
GCCGATAAATGACAATTTCG+AGG 0.493005 4.1:+33797553 None:intergenic
TTGAGATCTAGCAGCATCTA+GGG 0.495500 4.1:+33796815 None:intergenic
TTAGATCAGCCCCTTGCTGG+AGG 0.497118 4.1:+33796982 None:intergenic
CCGATAAAAGCCTTTGGACA+TGG 0.500427 4.1:+33796514 None:intergenic
CCTAGCTCAGCCCTCCAGCA+AGG 0.500862 4.1:-33796993 MS.gene056409:CDS
GCATTGCACTGCCAGAATAT+GGG 0.501046 4.1:-33797984 MS.gene056409:CDS
TACATGGAGTAGATAATTGA+CGG 0.501521 4.1:+33796254 None:intergenic
TCAAAGACATGGTTTCTTGT+CGG 0.502260 4.1:-33797643 MS.gene056409:CDS
GCTCGTGATTATATCATCAA+AGG 0.513244 4.1:+33796419 None:intergenic
TCGGGTAAATCATGAGCATA+TGG 0.513396 4.1:+33797748 None:intergenic
ATGAGTCGAGTCATCGAGGC+AGG 0.515945 4.1:+33797781 None:intergenic
GTTGTCAAGTTCAGGAAGCT+CGG 0.516331 4.1:+33797729 None:intergenic
TCCGTCTTTAGGTTGCTGAA+TGG 0.517648 4.1:+33796461 None:intergenic
CTTATTTGTCCATATCCTCC+AGG 0.518004 4.1:-33796318 MS.gene056409:CDS
GATGCCAAAAGCAGGTAACT+AGG 0.520797 4.1:+33796837 None:intergenic
CTCGTGATTATATCATCAAA+GGG 0.527399 4.1:+33796420 None:intergenic
TGCTCTCTTAAACAATTCCC+TGG 0.527535 4.1:-33796732 MS.gene056409:CDS
GATTCCGTCTTATTCCTCTC+AGG 0.528052 4.1:-33799068 MS.gene056409:intron
AGGTTGCCATTATTGCTGCC+TGG 0.528356 4.1:+33797602 None:intergenic
CTGCAAATACCATGATAAGT+AGG 0.530759 4.1:+33797113 None:intergenic
GATCCATTGCGGCTTACTGT+TGG 0.532942 4.1:-33796663 MS.gene056409:CDS
CTTGTCGGAGGTACTACTTG+TGG 0.534948 4.1:-33797628 MS.gene056409:CDS
GGAATTGTTTGTGAACTCGT+TGG 0.535480 4.1:-33796582 MS.gene056409:CDS
TAGCTCAGCCCTCCAGCAAG+GGG 0.536029 4.1:-33796991 MS.gene056409:CDS
TTGTCAAGTTCAGGAAGCTC+GGG 0.537006 4.1:+33797730 None:intergenic
ATATCGGCCATGGTATTATC+CGG 0.538000 4.1:-33797529 MS.gene056409:CDS
GCATGGCCTCTGTTATGTCC+AGG 0.538975 4.1:+33797808 None:intergenic
TAGATCAGCCCCTTGCTGGA+GGG 0.546263 4.1:+33796983 None:intergenic
CTACTCCATGTAAGAAGTGA+AGG 0.546727 4.1:-33796243 MS.gene056409:CDS
GCTTTCAATGCACTAACTAA+AGG 0.546743 4.1:+33797865 None:intergenic
GGATCAATTGCAGGAATGGT+CGG 0.547650 4.1:+33796681 None:intergenic
GATTATATCATCAAAGGGTG+CGG 0.550639 4.1:+33796425 None:intergenic
ACTTAATCTTGGAACTTGTA+GGG 0.553282 4.1:-33796538 MS.gene056409:CDS
GATAAAGGAGAGCATTGGTA+AGG 0.554559 4.1:-33796352 MS.gene056409:CDS
CATCTAGGGATGCCAAAAGC+AGG 0.554864 4.1:+33796829 None:intergenic
TATGGGAAATACGAGAGCGT+TGG 0.559578 4.1:-33797967 MS.gene056409:CDS
TCTTTAGGTTGCTGAATGGA+AGG 0.572281 4.1:+33796465 None:intergenic
ATTATATCATCAAAGGGTGC+GGG 0.573064 4.1:+33796426 None:intergenic
TTGAAAGGGGACGACGAGAG+TGG 0.579236 4.1:+33799249 None:intergenic
AAACCAACAGTAAGCCGCAA+TGG 0.579462 4.1:+33796660 None:intergenic
GGAAGAATAAGAAATTCTCC+TGG 0.582632 4.1:+33797574 None:intergenic
GACAACCTCTTCTGTCCCCA+AGG 0.585276 4.1:-33797712 MS.gene056409:CDS
GGGATCAATACAGGTATACC+TGG 0.585742 4.1:+33796300 None:intergenic
TCTCTCAGTAATAACCTCAC+CGG 0.588463 4.1:+33796278 None:intergenic
AGAGCATTGGTAAGGTTTCG+GGG 0.589661 4.1:-33796344 MS.gene056409:CDS
TCCATTCAGCAACCTAAAGA+CGG 0.595343 4.1:-33796462 MS.gene056409:CDS
GGTATACCTGTATTGATCCC+CGG 0.595466 4.1:-33796297 MS.gene056409:CDS
ATAATGGCAACCTGTTCACC+AGG 0.600507 4.1:-33797592 MS.gene056409:CDS
TTCAATGCACTAACTAAAGG+AGG 0.600852 4.1:+33797868 None:intergenic
GTAACGATAAAGGAGAGCAT+TGG 0.603794 4.1:-33796357 MS.gene056409:CDS
AATGTACATAGGCACTGCAC+CGG 0.606788 4.1:+33797510 None:intergenic
TGTTTGGATCATCAAAGACA+TGG 0.608692 4.1:-33797654 MS.gene056409:CDS
GTGAACTGCTGCATTCATTG+GGG 0.608779 4.1:+33797914 None:intergenic
TTTATCGGCTATATCGGCCA+TGG 0.610715 4.1:-33797539 MS.gene056409:CDS
TTCCTGCAATTGATCCATTG+CGG 0.611741 4.1:-33796674 MS.gene056409:CDS
TAGTCAGGAACAATGTACAT+AGG 0.613406 4.1:+33797499 None:intergenic
CTGATTGTTGATGAAGCTCA+CGG 0.614046 4.1:-33797044 MS.gene056409:CDS
CTTGGTTGAATACAGTATCA+GGG 0.615374 4.1:+33796781 None:intergenic
TCTCAAGCACTGAGATGCCA+GGG 0.617988 4.1:+33796715 None:intergenic
TCATCGAGGCAGGAGCGGCA+TGG 0.619945 4.1:+33797791 None:intergenic
CTTGTAGGGACCATGTCCAA+AGG 0.621624 4.1:-33796524 MS.gene056409:CDS
ATCCAGGAACTCGAATTGGA+AGG 0.621828 4.1:-33797167 MS.gene056409:CDS
ATGTCCAGGAAAGTGAAAAG+TGG 0.622147 4.1:+33797822 None:intergenic
TGGGTCCTTGGGGACAGAAG+AGG 0.623355 4.1:+33797707 None:intergenic
TCGAGTCATCGAGGCAGGAG+CGG 0.624226 4.1:+33797786 None:intergenic
CACTTTCCTGGACATAACAG+AGG 0.631168 4.1:-33797814 MS.gene056409:CDS
ATGCACTAACTAAAGGAGGT+AGG 0.636092 4.1:+33797872 None:intergenic
TGAGCTTCATCAACAATCAG+AGG 0.639277 4.1:+33797047 None:intergenic
AAGACATGGTTTCTTGTCGG+AGG 0.641334 4.1:-33797640 MS.gene056409:CDS
GCTTCTAATATGGGTCCTTG+GGG 0.641541 4.1:+33797697 None:intergenic
ACAACTAAAGAAGAAAGTAA+GGG 0.646717 4.1:+33796195 None:intergenic
AACAGTACAGTCTACTCACA+AGG 0.650174 4.1:-33796961 MS.gene056409:CDS
ACCTGTATTGATCCCCGGTG+AGG 0.653105 4.1:-33796292 MS.gene056409:CDS
GAGACCTGAGAGGAATAAGA+CGG 0.653253 4.1:+33799064 None:intergenic
TCACCAGAGCTTCAGCAGAG+TGG 0.657824 4.1:-33797895 MS.gene056409:CDS
AAGCAGGTAACTAGGACTTG+TGG 0.664545 4.1:+33796845 None:intergenic
GAGCATTGGTAAGGTTTCGG+GGG 0.674611 4.1:-33796343 MS.gene056409:CDS
TCCAATGAGTCGAGTCATCG+AGG 0.679421 4.1:+33797777 None:intergenic
AGAAATGAAGGAGACCTGAG+AGG 0.688557 4.1:+33799054 None:intergenic
CACTGCACCGGATAATACCA+TGG 0.689114 4.1:+33797522 None:intergenic
ATCAATACAGGTATACCTGG+AGG 0.690812 4.1:+33796303 None:intergenic
TGGGTTATCAGGTTACGAAG+CGG 0.691347 4.1:-33796628 MS.gene056409:CDS
AATGATTGGGACATCGCTGG+TGG 0.722880 4.1:-33797472 MS.gene056409:CDS
TCTCAGTAATAACCTCACCG+GGG 0.800637 4.1:+33796280 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAATTTCTAATCATAT+AGG + chr4.1:33797042-33797061 None:intergenic 10.0%
!! ATATAATTTAGTGTAATCAT+AGG - chr4.1:33796825-33796844 MS.gene056409:CDS 15.0%
!! TAGATAAAGAAAAAATATCT+AGG - chr4.1:33798553-33798572 MS.gene056409:intron 15.0%
!!! AATTTTTAATGTAGTTTAGT+TGG - chr4.1:33797094-33797113 MS.gene056409:CDS 15.0%
!!! ATTTTTAATGTAGTTTAGTT+GGG - chr4.1:33797095-33797114 MS.gene056409:CDS 15.0%
!!! CATTTTTTTCAAATTATCAT+CGG + chr4.1:33796805-33796824 None:intergenic 15.0%
!!! GTATTTAAAATAAGAAATGA+AGG + chr4.1:33796401-33796420 None:intergenic 15.0%
!! AAACACATACATATGATAAA+CGG + chr4.1:33796470-33796489 None:intergenic 20.0%
!! TAAAAGAAAAGTAACGATAA+AGG - chr4.1:33799073-33799092 MS.gene056409:CDS 20.0%
!! TATTATACACTATCACAATT+TGG - chr4.1:33798020-33798039 MS.gene056409:intron 20.0%
!!! ACAACATTTCATTTTAATTC+AGG + chr4.1:33797337-33797356 None:intergenic 20.0%
!!! TTTTTAATGTAGTTTAGTTG+GGG - chr4.1:33797096-33797115 MS.gene056409:CDS 20.0%
! AAGACTAAGGTAAAAAGATA+TGG - chr4.1:33796991-33797010 MS.gene056409:CDS 25.0%
! AATATCTAATATCATTGTCG+AGG + chr4.1:33798147-33798166 None:intergenic 25.0%
! ACAACTAAAGAAGAAAGTAA+GGG + chr4.1:33799248-33799267 None:intergenic 25.0%
! AGACTAAGGTAAAAAGATAT+GGG - chr4.1:33796992-33797011 MS.gene056409:CDS 25.0%
! AGTAAGAAAATCATGTAATC+AGG + chr4.1:33798122-33798141 None:intergenic 25.0%
! TCCTGACTATAAAAATGATT+GGG - chr4.1:33797955-33797974 MS.gene056409:CDS 25.0%
! TTCCTGACTATAAAAATGAT+TGG - chr4.1:33797954-33797973 MS.gene056409:CDS 25.0%
! TTGTGTATAATACACCAAAA+TGG + chr4.1:33797193-33797212 None:intergenic 25.0%
!! AATAAGCTGAAAACAACTTT+TGG - chr4.1:33796722-33796741 MS.gene056409:CDS 25.0%
!! ATATCTTTTTACCTTAGTCT+TGG + chr4.1:33796992-33797011 None:intergenic 25.0%
!! GTATGTGTTTCTGTATATAT+AGG - chr4.1:33796618-33796637 MS.gene056409:CDS 25.0%
!! TGGCTATATTCTCTAAAAAT+TGG - chr4.1:33798040-33798059 MS.gene056409:intron 25.0%
!!! TTTTTTTCTTTCTTTTCCTG+TGG - chr4.1:33798226-33798245 MS.gene056409:intron 25.0%
AAGCGGATGAAATCTTATAT+CGG - chr4.1:33798829-33798848 MS.gene056409:intron 30.0%
AATAACTGAATCACCTGTAA+TGG + chr4.1:33798001-33798020 None:intergenic 30.0%
AATAGCTTATGTACACGTTT+GGG - chr4.1:33796428-33796447 MS.gene056409:CDS 30.0%
ACTTAATCTTGGAACTTGTA+GGG - chr4.1:33798902-33798921 MS.gene056409:intron 30.0%
ATCACTTATGCACTTAATCT+TGG - chr4.1:33798891-33798910 MS.gene056409:intron 30.0%
CTCGTGATTATATCATCAAA+GGG + chr4.1:33799023-33799042 None:intergenic 30.0%
GAAAGAGAACAACATTAGAT+AGG + chr4.1:33798197-33798216 None:intergenic 30.0%
GAAATCTTATATCGGGATTT+CGG - chr4.1:33798837-33798856 MS.gene056409:intron 30.0%
GACAACTAAAGAAGAAAGTA+AGG + chr4.1:33799249-33799268 None:intergenic 30.0%
GTATAATACACCAAAATGGT+CGG + chr4.1:33797189-33797208 None:intergenic 30.0%
GTCCTGAAATTCAATTTGTA+AGG + chr4.1:33796343-33796362 None:intergenic 30.0%
GTCCTTACAAATTGAATTTC+AGG - chr4.1:33796338-33796357 MS.gene056409:CDS 30.0%
GTTAGCACTTACTGAAAAAT+GGG + chr4.1:33796246-33796265 None:intergenic 30.0%
TAATAGCTTATGTACACGTT+TGG - chr4.1:33796427-33796446 MS.gene056409:CDS 30.0%
TACATGGAGTAGATAATTGA+CGG + chr4.1:33799189-33799208 None:intergenic 30.0%
TCAATCCCAAAAATCCAAAA+CGG - chr4.1:33796210-33796229 MS.gene056409:CDS 30.0%
TCTGTTTGTGCTTCTAATAT+GGG + chr4.1:33797755-33797774 None:intergenic 30.0%
TTCTGTTTGTGCTTCTAATA+TGG + chr4.1:33797756-33797775 None:intergenic 30.0%
TTTCAAATTATCATCGGTGT+TGG + chr4.1:33796799-33796818 None:intergenic 30.0%
! AGAAGAAGAAAGAGATTTTG+TGG + chr4.1:33796268-33796287 None:intergenic 30.0%
! CAACAATCAGAGGAATTTTA+CGG + chr4.1:33798386-33798405 None:intergenic 30.0%
! CATTTGCTAATTTAATCGCT+TGG + chr4.1:33798680-33798699 None:intergenic 30.0%
! CTTTGATGATCCAAACAATT+TGG + chr4.1:33797783-33797802 None:intergenic 30.0%
! TCCTCGAAATTGTCATTTAT+CGG - chr4.1:33797886-33797905 MS.gene056409:CDS 30.0%
! TCCTTTTCTGTTTATTTGCA+GGG - chr4.1:33796313-33796332 MS.gene056409:CDS 30.0%
! TTCCTTTTCTGTTTATTTGC+AGG - chr4.1:33796312-33796331 MS.gene056409:CDS 30.0%
! TTGTCATTTATCGGCTATAT+CGG - chr4.1:33797895-33797914 MS.gene056409:CDS 30.0%
!! GAAAACCGTTTTGGATTTTT+GGG + chr4.1:33796218-33796237 None:intergenic 30.0%
!! TCCCAATCATTTTTATAGTC+AGG + chr4.1:33797959-33797978 None:intergenic 30.0%
!! TGAAAACCGTTTTGGATTTT+TGG + chr4.1:33796219-33796238 None:intergenic 30.0%
!!! TTGGATTTTTGGGATTGAAA+GGG + chr4.1:33796208-33796227 None:intergenic 30.0%
!!! TTTGGATTTTTGGGATTGAA+AGG + chr4.1:33796209-33796228 None:intergenic 30.0%
ACACTATCCTTCATTGCAAT+GGG - chr4.1:33797387-33797406 MS.gene056409:intron 35.0%
ACTTGCAAAAAATGCATCTC+TGG + chr4.1:33799054-33799073 None:intergenic 35.0%
AGCCTCTTGTGTAAAAAACA+GGG + chr4.1:33797221-33797240 None:intergenic 35.0%
AGCGGATGAAATCTTATATC+GGG - chr4.1:33798830-33798849 MS.gene056409:intron 35.0%
ATCACTTCACCTACTTATCA+TGG - chr4.1:33798318-33798337 MS.gene056409:intron 35.0%
ATGGGCGTAAAATTGATCTT+TGG - chr4.1:33797010-33797029 MS.gene056409:CDS 35.0%
ATTGCAATGAAGGATAGTGT+AGG + chr4.1:33797387-33797406 None:intergenic 35.0%
CACTTAATCTTGGAACTTGT+AGG - chr4.1:33798901-33798920 MS.gene056409:intron 35.0%
CGATGTACATAAAAAACAGC+CGG - chr4.1:33799271-33799290 MS.gene056409:CDS 35.0%
CTAAATTAGCCCACCTAAAT+TGG + chr4.1:33796583-33796602 None:intergenic 35.0%
CTGCAAATACCATGATAAGT+AGG + chr4.1:33798330-33798349 None:intergenic 35.0%
CTTGCAAAAAATGCATCTCT+GGG + chr4.1:33799053-33799072 None:intergenic 35.0%
CTTGGTTGAATACAGTATCA+GGG + chr4.1:33798662-33798681 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG + chr4.1:33797216-33797235 None:intergenic 35.0%
GAATTGTTTGTGAACTCGTT+GGG - chr4.1:33798859-33798878 MS.gene056409:intron 35.0%
GATTATATCATCAAAGGGTG+CGG + chr4.1:33799018-33799037 None:intergenic 35.0%
GCTCGTGATTATATCATCAA+AGG + chr4.1:33799024-33799043 None:intergenic 35.0%
GCTTTCAATGCACTAACTAA+AGG + chr4.1:33797578-33797597 None:intergenic 35.0%
GGAAGAATAAGAAATTCTCC+TGG + chr4.1:33797869-33797888 None:intergenic 35.0%
GGTTAGCACTTACTGAAAAA+TGG + chr4.1:33796247-33796266 None:intergenic 35.0%
TACACTATCCTTCATTGCAA+TGG - chr4.1:33797386-33797405 MS.gene056409:intron 35.0%
TAGCTAATCTTATTACCCGA+GGG + chr4.1:33797312-33797331 None:intergenic 35.0%
TAGTCAGGAACAATGTACAT+AGG + chr4.1:33797944-33797963 None:intergenic 35.0%
TCAAAGACATGGTTTCTTGT+CGG - chr4.1:33797797-33797816 MS.gene056409:CDS 35.0%
TCATAATGAGGCAGTACTAA+TGG + chr4.1:33797364-33797383 None:intergenic 35.0%
TCCCTGCAAATAAACAGAAA+AGG + chr4.1:33796317-33796336 None:intergenic 35.0%
TGTTTGGATCATCAAAGACA+TGG - chr4.1:33797786-33797805 MS.gene056409:CDS 35.0%
TTATTCCCGATAAAAGCCTT+TGG + chr4.1:33798935-33798954 None:intergenic 35.0%
TTCAATGCACTAACTAAAGG+AGG + chr4.1:33797575-33797594 None:intergenic 35.0%
TTGCAAAAAATGCATCTCTG+GGG + chr4.1:33799052-33799071 None:intergenic 35.0%
! ATTATATCATCAAAGGGTGC+GGG + chr4.1:33799017-33799036 None:intergenic 35.0%
! GGGGTAATAAGATTAGCTAA+GGG - chr4.1:33797115-33797134 MS.gene056409:CDS 35.0%
! GGGTAATAAGATTAGCTAAG+GGG - chr4.1:33797116-33797135 MS.gene056409:CDS 35.0%
! TGGGGTAATAAGATTAGCTA+AGG - chr4.1:33797114-33797133 MS.gene056409:CDS 35.0%
! TTTCTTTCTTTTCCTGTGGT+TGG - chr4.1:33798230-33798249 MS.gene056409:intron 35.0%
!! ATGTGTTTTTGTAACCCAGT+TGG - chr4.1:33796482-33796501 MS.gene056409:CDS 35.0%
!! GCTGTTTTCATAAGCTATTC+TGG - chr4.1:33796687-33796706 MS.gene056409:CDS 35.0%
!! TGTGTTTTTGTAACCCAGTT+GGG - chr4.1:33796483-33796502 MS.gene056409:CDS 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG - chr4.1:33797216-33797235 MS.gene056409:intron 35.0%
!!! TGGATTTTTGGGATTGAAAG+GGG + chr4.1:33796207-33796226 None:intergenic 35.0%
AAAAATGATTGGGACATCGC+TGG - chr4.1:33797965-33797984 MS.gene056409:CDS 40.0%
AACAGTACAGTCTACTCACA+AGG - chr4.1:33798479-33798498 MS.gene056409:intron 40.0%
AAGAAATTCTCCTGGTGAAC+AGG + chr4.1:33797861-33797880 None:intergenic 40.0%
ACAGAAGCAGCCAAATTGTT+TGG - chr4.1:33797770-33797789 MS.gene056409:CDS 40.0%
ACGTTCTAACGAAGACTGTT+TGG + chr4.1:33796969-33796988 None:intergenic 40.0%
AGCTAATCTTATTACCCGAG+GGG + chr4.1:33797311-33797330 None:intergenic 40.0%
ATATCGGCCATGGTATTATC+CGG - chr4.1:33797911-33797930 MS.gene056409:CDS 40.0%
ATCAATACAGGTATACCTGG+AGG + chr4.1:33799140-33799159 None:intergenic 40.0%
ATGCACTAACTAAAGGAGGT+AGG + chr4.1:33797571-33797590 None:intergenic 40.0%
ATGTCCAGGAAAGTGAAAAG+TGG + chr4.1:33797621-33797640 None:intergenic 40.0%
ATTGTGGTCATCTGACTGAA+AGG + chr4.1:33797267-33797286 None:intergenic 40.0%
CAATGGATCAATTGCAGGAA+TGG + chr4.1:33798766-33798785 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG + chr4.1:33797222-33797241 None:intergenic 40.0%
CTACTCCATGTAAGAAGTGA+AGG - chr4.1:33799197-33799216 MS.gene056409:intron 40.0%
CTAGCTAATCTTATTACCCG+AGG + chr4.1:33797313-33797332 None:intergenic 40.0%
CTCTCGTATTTCCCATATTC+TGG + chr4.1:33797470-33797489 None:intergenic 40.0%
CTTATTTGTCCATATCCTCC+AGG - chr4.1:33799122-33799141 MS.gene056409:intron 40.0%
GACAAAACCCATTGCAATGA+AGG + chr4.1:33797397-33797416 None:intergenic 40.0%
GCACTTACTGAAAAATGGGA+AGG + chr4.1:33796242-33796261 None:intergenic 40.0%
GCCGATAAATGACAATTTCG+AGG + chr4.1:33797890-33797909 None:intergenic 40.0%
GCTTGGTTGAATACAGTATC+AGG + chr4.1:33798663-33798682 None:intergenic 40.0%
GGAATTGTTTGTGAACTCGT+TGG - chr4.1:33798858-33798877 MS.gene056409:intron 40.0%
GGATAGTGTAGGTCATAATG+AGG + chr4.1:33797376-33797395 None:intergenic 40.0%
TAAGCACTTGTGAGACTGTT+TGG + chr4.1:33796917-33796936 None:intergenic 40.0%
TCAGTAAGTACTCCGTCTTT+AGG + chr4.1:33798993-33799012 None:intergenic 40.0%
TCCATTCAGCAACCTAAAGA+CGG - chr4.1:33798978-33798997 MS.gene056409:intron 40.0%
TCGGGTAAATCATGAGCATA+TGG + chr4.1:33797695-33797714 None:intergenic 40.0%
TCTCTCAGTAATAACCTCAC+CGG + chr4.1:33799165-33799184 None:intergenic 40.0%
TGAGCTTCATCAACAATCAG+AGG + chr4.1:33798396-33798415 None:intergenic 40.0%
TGCAAAAAATGCATCTCTGG+GGG + chr4.1:33799051-33799070 None:intergenic 40.0%
TGCTCTCTTAAACAATTCCC+TGG - chr4.1:33798708-33798727 MS.gene056409:intron 40.0%
TGCTTCTAATATGGGTCCTT+GGG + chr4.1:33797747-33797766 None:intergenic 40.0%
TTCCTGCAATTGATCCATTG+CGG - chr4.1:33798766-33798785 MS.gene056409:intron 40.0%
TTGAGATCTAGCAGCATCTA+GGG + chr4.1:33798628-33798647 None:intergenic 40.0%
TTGGCGCAACAGTAAAATTG+TGG + chr4.1:33797283-33797302 None:intergenic 40.0%
! AAGTCCTAGTTACCTGCTTT+TGG - chr4.1:33798599-33798618 MS.gene056409:intron 40.0%
! ACAATTTTACTGTTGCGCCA+AGG - chr4.1:33797282-33797301 MS.gene056409:intron 40.0%
! CATGTCCAAAGGCTTTTATC+GGG - chr4.1:33798927-33798946 MS.gene056409:intron 40.0%
! CCATGTCCAAAGGCTTTTAT+CGG - chr4.1:33798926-33798945 MS.gene056409:intron 40.0%
! CTCGGGTAATAAGATTAGCT+AGG - chr4.1:33797311-33797330 MS.gene056409:intron 40.0%
! CTGATTGTTGATGAAGCTCA+CGG - chr4.1:33798396-33798415 MS.gene056409:intron 40.0%
! GTAACGATAAAGGAGAGCAT+TGG - chr4.1:33799083-33799102 MS.gene056409:CDS 40.0%
!! AGTGAAGGTGCTGATATTAG+TGG - chr4.1:33799212-33799231 MS.gene056409:CDS 40.0%
!! GATAAAGGAGAGCATTGGTA+AGG - chr4.1:33799088-33799107 MS.gene056409:CDS 40.0%
!! TCATTGCAATGGGTTTTGTC+AGG - chr4.1:33797397-33797416 MS.gene056409:intron 40.0%
!! TCTTTAGGTTGCTGAATGGA+AGG + chr4.1:33798978-33798997 None:intergenic 40.0%
AAACCAACAGTAAGCCGCAA+TGG + chr4.1:33798783-33798802 None:intergenic 45.0%
AAGACATGGTTTCTTGTCGG+AGG - chr4.1:33797800-33797819 MS.gene056409:CDS 45.0%
AAGCAGGTAACTAGGACTTG+TGG + chr4.1:33798598-33798617 None:intergenic 45.0%
ACAGGTATACCTGGAGGATA+TGG + chr4.1:33799134-33799153 None:intergenic 45.0%
AGAAATGAAGGAGACCTGAG+AGG + chr4.1:33796389-33796408 None:intergenic 45.0%
AGCATTGCACTGCCAGAATA+TGG - chr4.1:33797455-33797474 MS.gene056409:intron 45.0%
ATAATGGCAACCTGTTCACC+AGG - chr4.1:33797848-33797867 MS.gene056409:CDS 45.0%
ATCCAGGAACTCGAATTGGA+AGG - chr4.1:33798273-33798292 MS.gene056409:intron 45.0%
ATTCTCCCCAGTGCCAATTT+AGG - chr4.1:33796567-33796586 MS.gene056409:CDS 45.0%
CACTTTCCTGGACATAACAG+AGG - chr4.1:33797626-33797645 MS.gene056409:CDS 45.0%
CAGAAGAGGTTGTCAAGTTC+AGG + chr4.1:33797722-33797741 None:intergenic 45.0%
CAGCACCTTCACTTCTTACA+TGG + chr4.1:33799205-33799224 None:intergenic 45.0%
CCGATAAAAGCCTTTGGACA+TGG + chr4.1:33798929-33798948 None:intergenic 45.0%
CGTTAGAACGTCCAAGACTA+AGG - chr4.1:33796978-33796997 MS.gene056409:CDS 45.0%
CTCTCAGTAATAACCTCACC+GGG + chr4.1:33799164-33799183 None:intergenic 45.0%
GAGACCTGAGAGGAATAAGA+CGG + chr4.1:33796379-33796398 None:intergenic 45.0%
GAGACTGTTTGGAGAGCTTA+TGG + chr4.1:33796906-33796925 None:intergenic 45.0%
GATGCCAAAAGCAGGTAACT+AGG + chr4.1:33798606-33798625 None:intergenic 45.0%
GCATTGCACTGCCAGAATAT+GGG - chr4.1:33797456-33797475 MS.gene056409:CDS 45.0%
GCTTCTAATATGGGTCCTTG+GGG + chr4.1:33797746-33797765 None:intergenic 45.0%
GGATCAATTGCAGGAATGGT+CGG + chr4.1:33798762-33798781 None:intergenic 45.0%
GGGATCAATACAGGTATACC+TGG + chr4.1:33799143-33799162 None:intergenic 45.0%
GGTAACTAGGACTTGTGGTT+TGG + chr4.1:33798593-33798612 None:intergenic 45.0%
GGTGAACTGCTGCATTCATT+GGG + chr4.1:33797530-33797549 None:intergenic 45.0%
GTCTTCAGACTCGACTCTTA+AGG - chr4.1:33798167-33798186 MS.gene056409:intron 45.0%
GTGAACTGCTGCATTCATTG+GGG + chr4.1:33797529-33797548 None:intergenic 45.0%
GTGCTTCTAATATGGGTCCT+TGG + chr4.1:33797748-33797767 None:intergenic 45.0%
GTTGAGATCTAGCAGCATCT+AGG + chr4.1:33798629-33798648 None:intergenic 45.0%
GTTGTCAAGTTCAGGAAGCT+CGG + chr4.1:33797714-33797733 None:intergenic 45.0%
TCATCTATGCTGCACATGTC+AGG - chr4.1:33798522-33798541 MS.gene056409:intron 45.0%
TCTCAGTAATAACCTCACCG+GGG + chr4.1:33799163-33799182 None:intergenic 45.0%
TGCTATCCAGGAACTCGAAT+TGG - chr4.1:33798269-33798288 MS.gene056409:intron 45.0%
TGGGTTATCAGGTTACGAAG+CGG - chr4.1:33798812-33798831 MS.gene056409:intron 45.0%
TGGTGAACTGCTGCATTCAT+TGG + chr4.1:33797531-33797550 None:intergenic 45.0%
TTGTCAAGTTCAGGAAGCTC+GGG + chr4.1:33797713-33797732 None:intergenic 45.0%
! AATGTACATAGGCACTGCAC+CGG + chr4.1:33797933-33797952 None:intergenic 45.0%
! GACTTGTGGTTTGGAGAGTT+TGG + chr4.1:33798584-33798603 None:intergenic 45.0%
! GATTCCGTCTTATTCCTCTC+AGG - chr4.1:33796372-33796391 MS.gene056409:CDS 45.0%
! GGTATACCTGTATTGATCCC+CGG - chr4.1:33799143-33799162 MS.gene056409:intron 45.0%
! TATGGGAAATACGAGAGCGT+TGG - chr4.1:33797473-33797492 MS.gene056409:CDS 45.0%
! TGGGAAGGTGAAAACCGTTT+TGG + chr4.1:33796227-33796246 None:intergenic 45.0%
! TGTAATCATAGGCGTCGTGT+CGG - chr4.1:33796836-33796855 MS.gene056409:CDS 45.0%
! TTCCTTCCAATTCGAGTTCC+TGG + chr4.1:33798278-33798297 None:intergenic 45.0%
! TTTATCGGCTATATCGGCCA+TGG - chr4.1:33797901-33797920 MS.gene056409:CDS 45.0%
!! AGAGCATTGGTAAGGTTTCG+GGG - chr4.1:33799096-33799115 MS.gene056409:CDS 45.0%
!! ATGGGAAATACGAGAGCGTT+GGG - chr4.1:33797474-33797493 MS.gene056409:CDS 45.0%
!! GAGAGCATTGGTAAGGTTTC+GGG - chr4.1:33799095-33799114 MS.gene056409:CDS 45.0%
!! GGAGAGCATTGGTAAGGTTT+CGG - chr4.1:33799094-33799113 MS.gene056409:CDS 45.0%
!! TCCGTCTTTAGGTTGCTGAA+TGG + chr4.1:33798982-33799001 None:intergenic 45.0%
!! TGCTCTGGTGGTATTGACTT+GGG - chr4.1:33796507-33796526 MS.gene056409:CDS 45.0%
!! TTGTCGGAGGTACTACTTGT+GGG - chr4.1:33797813-33797832 MS.gene056409:CDS 45.0%
!! TTTTGGGAGCTTGGGTTATC+AGG - chr4.1:33798801-33798820 MS.gene056409:intron 45.0%
!!! ACTGTTGGTTTTTGGGAGCT+TGG - chr4.1:33798792-33798811 MS.gene056409:intron 45.0%
!!! CTGTTGGTTTTTGGGAGCTT+GGG - chr4.1:33798793-33798812 MS.gene056409:intron 45.0%
!!! GCGGCTTACTGTTGGTTTTT+GGG - chr4.1:33798785-33798804 MS.gene056409:intron 45.0%
!!! TGCGGCTTACTGTTGGTTTT+TGG - chr4.1:33798784-33798803 MS.gene056409:intron 45.0%
AATGATTGGGACATCGCTGG+TGG - chr4.1:33797968-33797987 MS.gene056409:CDS 50.0%
AGCCCACCTAAATTGGCACT+GGG + chr4.1:33796576-33796595 None:intergenic 50.0%
AGCCGCAATGGATCAATTGC+AGG + chr4.1:33798771-33798790 None:intergenic 50.0%
AGGTACTACTTGTGGGATCC+AGG - chr4.1:33797820-33797839 MS.gene056409:CDS 50.0%
AGGTTGCCATTATTGCTGCC+TGG + chr4.1:33797841-33797860 None:intergenic 50.0%
ATACCTGCAACACCAACCAC+AGG + chr4.1:33798245-33798264 None:intergenic 50.0%
CACTGCACCGGATAATACCA+TGG + chr4.1:33797921-33797940 None:intergenic 50.0%
CATCTAGGGATGCCAAAAGC+AGG + chr4.1:33798614-33798633 None:intergenic 50.0%
CTTGTAGGGACCATGTCCAA+AGG - chr4.1:33798916-33798935 MS.gene056409:intron 50.0%
GATCCATTGCGGCTTACTGT+TGG - chr4.1:33798777-33798796 MS.gene056409:intron 50.0%
TAGCCCACCTAAATTGGCAC+TGG + chr4.1:33796577-33796596 None:intergenic 50.0%
TCAAACCTGAGACCTCGAGT+AGG + chr4.1:33796548-33796567 None:intergenic 50.0%
TCCAATGAGTCGAGTCATCG+AGG + chr4.1:33797666-33797685 None:intergenic 50.0%
TCCCCAGTGCCAATTTAGGT+GGG - chr4.1:33796571-33796590 MS.gene056409:CDS 50.0%
TGAAGCACAGACACAGACAC+CGG - chr4.1:33796751-33796770 MS.gene056409:CDS 50.0%
TGGGATCCAGGCAGCAATAA+TGG - chr4.1:33797832-33797851 MS.gene056409:CDS 50.0%
! GGCAGCATTTTCTTCAGCTG+AGG + chr4.1:33797600-33797619 None:intergenic 50.0%
! GTTGGTGTCTATGTCGTGTC+CGG + chr4.1:33796773-33796792 None:intergenic 50.0%
!! CTGCTCTGGTGGTATTGACT+TGG - chr4.1:33796506-33796525 MS.gene056409:CDS 50.0%
!! CTTGTCGGAGGTACTACTTG+TGG - chr4.1:33797812-33797831 MS.gene056409:CDS 50.0%
!! GAGCATTGGTAAGGTTTCGG+GGG - chr4.1:33799097-33799116 MS.gene056409:CDS 50.0%
!! GCAGGTATTGAGTGCTATCC+AGG - chr4.1:33798257-33798276 MS.gene056409:intron 50.0%
!! GTGGTATTGACTTGGGACCT+GGG - chr4.1:33796514-33796533 MS.gene056409:CDS 50.0%
!! TATCATCGGTGTTGGCGTGT+TGG + chr4.1:33796791-33796810 None:intergenic 50.0%
!! TCTCAAGCACTGAGATGCCA+GGG + chr4.1:33798728-33798747 None:intergenic 50.0%
!! TGGTGGTGTCACTCCATTAC+AGG - chr4.1:33797985-33798004 MS.gene056409:CDS 50.0%
!! TTCTCAAGCACTGAGATGCC+AGG + chr4.1:33798729-33798748 None:intergenic 50.0%
!! TTTCCTGTGGTTGGTGTTGC+AGG - chr4.1:33798239-33798258 MS.gene056409:intron 50.0%
!!! GCTGCCACTTTTCACTTTCC+TGG - chr4.1:33797614-33797633 MS.gene056409:CDS 50.0%
AAAATGGTCGGACCCCTTCC+CGG + chr4.1:33797177-33797196 None:intergenic 55.0%
ACAAAGCTCCCGCATACGCA+GGG - chr4.1:33797150-33797169 MS.gene056409:CDS 55.0%
ACCTCACCGGGGATCAATAC+AGG + chr4.1:33799152-33799171 None:intergenic 55.0%
ATGAGTCGAGTCATCGAGGC+AGG + chr4.1:33797662-33797681 None:intergenic 55.0%
CACAGACACTCCTCAGACGT+CGG + chr4.1:33796871-33796890 None:intergenic 55.0%
CTCCCCAGTGCCAATTTAGG+TGG - chr4.1:33796570-33796589 MS.gene056409:CDS 55.0%
CTGTTAGATCAGCCCCTTGC+TGG + chr4.1:33798464-33798483 None:intergenic 55.0%
GAAGCTCACGGTGCACATCT+AGG - chr4.1:33798408-33798427 MS.gene056409:intron 55.0%
GACAACCTCTTCTGTCCCCA+AGG - chr4.1:33797728-33797747 MS.gene056409:CDS 55.0%
GCATGGCCTCTGTTATGTCC+AGG + chr4.1:33797635-33797654 None:intergenic 55.0%
GCCCACCTAAATTGGCACTG+GGG + chr4.1:33796575-33796594 None:intergenic 55.0%
GCCTCGATGACTCGACTCAT+TGG - chr4.1:33797662-33797681 MS.gene056409:CDS 55.0%
TAGATCAGCCCCTTGCTGGA+GGG + chr4.1:33798460-33798479 None:intergenic 55.0%
TATTACCCGAGGGGAAGCCT+TGG + chr4.1:33797302-33797321 None:intergenic 55.0%
TCACCAGAGCTTCAGCAGAG+TGG - chr4.1:33797545-33797564 MS.gene056409:CDS 55.0%
TTAGATCAGCCCCTTGCTGG+AGG + chr4.1:33798461-33798480 None:intergenic 55.0%
TTGAAAGGGGACGACGAGAG+TGG + chr4.1:33796194-33796213 None:intergenic 55.0%
! ACCTGTATTGATCCCCGGTG+AGG - chr4.1:33799148-33799167 MS.gene056409:intron 55.0%
! ATGCGGGAGCTTTGTGCATC+AGG + chr4.1:33797145-33797164 None:intergenic 55.0%
!! GGTGGTATTGACTTGGGACC+TGG - chr4.1:33796513-33796532 MS.gene056409:CDS 55.0%
ACCACCAGAGCAGCCCAACT+GGG + chr4.1:33796499-33796518 None:intergenic 60.0%
AGGCCACTCTGCTGAAGCTC+TGG + chr4.1:33797551-33797570 None:intergenic 60.0%
CACAAAGCTCCCGCATACGC+AGG - chr4.1:33797149-33797168 MS.gene056409:CDS 60.0%
CTAGCTCAGCCCTCCAGCAA+GGG - chr4.1:33798448-33798467 MS.gene056409:intron 60.0%
GTAACCCAGTTGGGCTGCTC+TGG - chr4.1:33796492-33796511 MS.gene056409:CDS 60.0%
GTGCTCCTACTCGAGGTCTC+AGG - chr4.1:33796540-33796559 MS.gene056409:CDS 60.0%
GTGTCGAACACCGACGTCTG+AGG - chr4.1:33796858-33796877 MS.gene056409:CDS 60.0%
TACCACCAGAGCAGCCCAAC+TGG + chr4.1:33796500-33796519 None:intergenic 60.0%
TAGCTCAGCCCTCCAGCAAG+GGG - chr4.1:33798449-33798468 MS.gene056409:intron 60.0%
TCGAGTCATCGAGGCAGGAG+CGG + chr4.1:33797657-33797676 None:intergenic 60.0%
TGGGTCCTTGGGGACAGAAG+AGG + chr4.1:33797736-33797755 None:intergenic 60.0%
! GGGAAGGGGTCCGACCATTT+TGG - chr4.1:33797176-33797195 MS.gene056409:CDS 60.0%
! TCGAGTAGGAGCACACTCCC+AGG + chr4.1:33796534-33796553 None:intergenic 60.0%
! TGGGAGTGTGCTCCTACTCG+AGG - chr4.1:33796533-33796552 MS.gene056409:CDS 60.0%
ACCCAGTTGGGCTGCTCTGG+TGG - chr4.1:33796495-33796514 MS.gene056409:CDS 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr4.1:33797162-33797181 MS.gene056409:CDS 65.0%
CCTAGCTCAGCCCTCCAGCA+AGG - chr4.1:33798447-33798466 MS.gene056409:intron 65.0%
CCTTGCTGGAGGGCTGAGCT+AGG + chr4.1:33798450-33798469 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr4.1:33797162-33797181 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr4.1:33797161-33797180 MS.gene056409:CDS 65.0%
GTTGCGCCAAGGCTTCCCCT+CGG - chr4.1:33797293-33797312 MS.gene056409:intron 65.0%
TCATCGAGGCAGGAGCGGCA+TGG + chr4.1:33797652-33797671 None:intergenic 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr4.1:33797161-33797180 None:intergenic 65.0%
TTGCGCCAAGGCTTCCCCTC+GGG - chr4.1:33797294-33797313 MS.gene056409:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG - chr4.1:33797160-33797179 MS.gene056409:CDS 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr4.1:33797156-33797175 MS.gene056409:CDS 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr4.1:33797155-33797174 MS.gene056409:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 33796161 33799301 33796161 ID=MS.gene056409
chr4.1 mRNA 33796161 33799301 33796161 ID=MS.gene056409.t1;Parent=MS.gene056409
chr4.1 exon 33799209 33799301 33799209 ID=MS.gene056409.t1.exon1;Parent=MS.gene056409.t1
chr4.1 CDS 33799209 33799301 33799209 ID=cds.MS.gene056409.t1;Parent=MS.gene056409.t1
chr4.1 exon 33799069 33799128 33799069 ID=MS.gene056409.t1.exon2;Parent=MS.gene056409.t1
chr4.1 CDS 33799069 33799128 33799069 ID=cds.MS.gene056409.t1;Parent=MS.gene056409.t1
chr4.1 exon 33797456 33798013 33797456 ID=MS.gene056409.t1.exon3;Parent=MS.gene056409.t1
chr4.1 CDS 33797456 33798013 33797456 ID=cds.MS.gene056409.t1;Parent=MS.gene056409.t1
chr4.1 exon 33796161 33797201 33796161 ID=MS.gene056409.t1.exon4;Parent=MS.gene056409.t1
chr4.1 CDS 33796161 33797201 33796161 ID=cds.MS.gene056409.t1;Parent=MS.gene056409.t1
Gene Sequence

>MS.gene056409

ATGGTGTATATTTCGTTCTCACTATTACTTCCACTCTCGTCGTCCCCTTTCAATCCCAAAAATCCAAAACGGTTTTCACCTTCCCATTTTTCAGTAAGTGCTAACCACAAAATCTCTTTCTTCTTCTGTTTCTAACTTCACACTTCTCATTTTCCTTTTCTGTTTATTTGCAGGGACGTCCTTACAAATTGAATTTCAGGACTTCATTGACGATTCCGTCTTATTCCTCTCAGGTCTCCTTCATTTCTTATTTTAAATACTAATAATAATAGCTTATGTACACGTTTGGGTAAACTATTTAATTAACCGTTTATCATATGTATGTGTTTTTGTAACCCAGTTGGGCTGCTCTGGTGGTATTGACTTGGGACCTGGGAGTGTGCTCCTACTCGAGGTCTCAGGTTTGATTCTCCCCAGTGCCAATTTAGGTGGGCTAATTTAGCTTCTTCAAAAAAATGTATGTGTTTCTGTATATATAGGCTATTTCTAAAACAAAAAAGATAAACTATTTTCATATAAGCTATAAGCTGTTTTCATAAGCTATTCTGGAGAGCTTACTGAAATAAGCTGAAAACAACTTTTGGACATGATGAAGCACAGACACAGACACCGGACACGACATAGACACCAACACGCCAACACCGATGATAATTTGAAAAAAATGATATAATTTAGTGTAATCATAGGCGTCGTGTCGGTGTCGAACACCGACGTCTGAGGAGTGTCTGTGCTTCATTTGTTTCCATAAGCTCTCCAAACAGTCTCACAAGTGCTTATGTCGAAAGATAAGCTTAAATAAGTCAATCCAAACAGTCTTCGTTAGAACGTCCAAGACTAAGGTAAAAAGATATGGGCGTAAAATTGATCTTTGGTGCAGTCCTATATGATTAGAAATTTATATACACTTTGTTTACACTATAATGTATATGTTATAATTTTTAATGTAGTTTAGTTGGGGTAATAAGATTAGCTAAGGGGTAGCCTGATGCACAAAGCTCCCGCATACGCAGGGTCCGGGAAGGGGTCCGACCATTTTGGTGTATTATACACAACCTTACCCTGTTTTTTACACAAGAGGCTGTTTCTAAGACTTGTACTCGTGACCTTTCAGTCAGATGACCACAATTTTACTGTTGCGCCAAGGCTTCCCCTCGGGTAATAAGATTAGCTAGGCCTGAATTAAAATGAAATGTTGTTTATCCATTAGTACTGCCTCATTATGACCTACACTATCCTTCATTGCAATGGGTTTTGTCAGGCAGTAACAATTCTTTAAATTATTTTACAGCAAAGAAGCATTGCACTGCCAGAATATGGGAAATACGAGAGCGTTGGGACAGTGAGCACTGAATCAATCACAAACAACCCCAATGAATGCAGCAGTTCACCAGAGCTTCAGCAGAGTGGCCTACCTCCTTTAGTTAGTGCATTGAAAGCCTCAGCTGAAGAAAATGCTGCCACTTTTCACTTTCCTGGACATAACAGAGGCCATGCCGCTCCTGCCTCGATGACTCGACTCATTGGAAGAAGACCATATGCTCATGATTTACCCGAGCTTCCTGAACTTGACAACCTCTTCTGTCCCCAAGGACCCATATTAGAAGCACAAACAGAAGCAGCCAAATTGTTTGGATCATCAAAGACATGGTTTCTTGTCGGAGGTACTACTTGTGGGATCCAGGCAGCAATAATGGCAACCTGTTCACCAGGAGAATTTCTTATTCTTCCTCGAAATTGTCATTTATCGGCTATATCGGCCATGGTATTATCCGGTGCAGTGCCTATGTACATTGTTCCTGACTATAAAAATGATTGGGACATCGCTGGTGGTGTCACTCCATTACAGGTGATTCAGTTATTATTATACACTATCACAATTTGGCTATATTCTCTAAAAATTGGTGATAAAAGAAATTGACATGTTAGCGTCGCAGTTATTATACACAAGATGAGTTTTTCCTGATTACATGATTTTCTTACTGTCCTCGACAATGATATTAGATATTGTCTTCAGACTCGACTCTTAAGGTAATCCTATCTAATGTTGTTCTCTTTCTCTTGTTTTTTTTTTTCTTTCTTTTCCTGTGGTTGGTGTTGCAGGTATTGAGTGCTATCCAGGAACTCGAATTGGAAGGAAAAAAAGCAGCAGCAGTTTTCATCACTTCACCTACTTATCATGGTATTTGCAGTAACTTGAGCGACATTTCTGAGTTGTGTCATTACCGTAAAATTCCTCTGATTGTTGATGAAGCTCACGGTGCACATCTAGGATTTCATTCTGAACTGCCTAGCTCAGCCCTCCAGCAAGGGGCTGATCTAACAGTACAGTCTACTCACAAGGTTCTTTGCTCTCTTACTCAGTCATCTATGCTGCACATGTCAGGTGACATTGTAGATAAAGAAAAAATATCTAGGTGTCTCCAAACTCTCCAAACCACAAGTCCTAGTTACCTGCTTTTGGCATCCCTAGATGCTGCTAGATCTCAACTTAGTGAAAGCCCTGATACTGTATTCAACCAAGCGATTAAATTAGCAAATGAAGCAAAGTGCTCTCTTAAACAATTCCCTGGCATCTCAGTGCTTGAGAATTCAAGCTTTCCGACCATTCCTGCAATTGATCCATTGCGGCTTACTGTTGGTTTTTGGGAGCTTGGGTTATCAGGTTACGAAGCGGATGAAATCTTATATCGGGATTTCGGAATTGTTTGTGAACTCGTTGGGAATAAATCTATCACTTATGCACTTAATCTTGGAACTTGTAGGGACCATGTCCAAAGGCTTTTATCGGGAATAAAGCATCTAGCTGCAACATATCCTTCCATTCAGCAACCTAAAGACGGAGTACTTACTGAACCCGCACCCTTTGATGATATAATCACGAGCTTGACCCCCAGAGATGCATTTTTTGCAAGTAAAAGAAAAGTAACGATAAAGGAGAGCATTGGTAAGGTTTCGGGGGAGCTTATTTGTCCATATCCTCCAGGTATACCTGTATTGATCCCCGGTGAGGTTATTACTGAGAGAGCCGTCAATTATCTACTCCATGTAAGAAGTGAAGGTGCTGATATTAGTGGAGCATCTGATCCCTTACTTTCTTCTTTAGTTGTCTGCGATGTACATAAAAAACAGCCGGTCTCATAA

Protein sequence

>MS.gene056409.t1

MVYISFSLLLPLSSSPFNPKNPKRFSPSHFSGRPYKLNFRTSLTIPSYSSQQRSIALPEYGKYESVGTVSTESITNNPNECSSSPELQQSGLPPLVSALKASAEENAATFHFPGHNRGHAAPASMTRLIGRRPYAHDLPELPELDNLFCPQGPILEAQTEAAKLFGSSKTWFLVGGTTCGIQAAIMATCSPGEFLILPRNCHLSAISAMVLSGAVPMYIVPDYKNDWDIAGGVTPLQVLSAIQELELEGKKAAAVFITSPTYHGICSNLSDISELCHYRKIPLIVDEAHGAHLGFHSELPSSALQQGADLTVQSTHKVLCSLTQSSMLHMSGDIVDKEKISRCLQTLQTTSPSYLLLASLDAARSQLSESPDTVFNQAIKLANEAKCSLKQFPGISVLENSSFPTIPAIDPLRLTVGFWELGLSGYEADEILYRDFGIVCELVGNKSITYALNLGTCRDHVQRLLSGIKHLAATYPSIQQPKDGVLTEPAPFDDIITSLTPRDAFFASKRKVTIKESIGKVSGELICPYPPGIPVLIPGEVITERAVNYLLHVRSEGADISGASDPLLSSLVVCDVHKKQPVS