Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065504.t1 | XP_024640034.1 | 98.1 | 208 | 4 | 0 | 1 | 208 | 1 | 208 | 1.30E-115 | 425.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065504.t1 | Q567B1 | 50.2 | 207 | 92 | 4 | 4 | 206 | 101 | 300 | 2.8e-50 | 199.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065504.t1 | B7FLQ7 | 98.1 | 208 | 4 | 0 | 1 | 208 | 1 | 208 | 9.3e-116 | 425.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene065504 | 0.801482 | 8.82E-49 | -1.69E-46 |
| MS.gene049786 | MS.gene065504 | 0.829818 | 4.16E-55 | -1.69E-46 |
| MS.gene050941 | MS.gene065504 | 0.818608 | 1.79E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene065504 | 0.808445 | 3.09E-50 | -1.69E-46 |
| MS.gene051452 | MS.gene065504 | 0.82672 | 2.32E-54 | -1.69E-46 |
| MS.gene051655 | MS.gene065504 | 0.809024 | 2.32E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene065504 | 0.810876 | 9.27E-51 | -1.69E-46 |
| MS.gene051831 | MS.gene065504 | 0.804239 | 2.38E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene065504 | 0.834078 | 3.69E-56 | -1.69E-46 |
| MS.gene052434 | MS.gene065504 | 0.840479 | 8.48E-58 | -1.69E-46 |
| MS.gene053298 | MS.gene065504 | 0.805002 | 1.65E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene065504 | 0.800967 | 1.12E-48 | -1.69E-46 |
| MS.gene05469 | MS.gene065504 | 0.809933 | 1.48E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene065504 | 0.829916 | 3.94E-55 | -1.69E-46 |
| MS.gene055313 | MS.gene065504 | 0.806791 | 6.93E-50 | -1.69E-46 |
| MS.gene055603 | MS.gene065504 | 0.834223 | 3.39E-56 | -1.69E-46 |
| MS.gene055623 | MS.gene065504 | 0.829531 | 4.89E-55 | -1.69E-46 |
| MS.gene056638 | MS.gene065504 | 0.852485 | 4.48E-61 | -1.69E-46 |
| MS.gene056699 | MS.gene065504 | 0.842287 | 2.84E-58 | -1.69E-46 |
| MS.gene056787 | MS.gene065504 | 0.823088 | 1.67E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene065504 | 0.863892 | 1.80E-64 | -1.69E-46 |
| MS.gene057026 | MS.gene065504 | 0.811901 | 5.55E-51 | -1.69E-46 |
| MS.gene057055 | MS.gene065504 | 0.813472 | 2.52E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene065504 | 0.814451 | 1.53E-51 | -1.69E-46 |
| MS.gene057360 | MS.gene065504 | 0.809026 | 2.32E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene065504 | 0.818728 | 1.68E-52 | -1.69E-46 |
| MS.gene05897 | MS.gene065504 | 0.817157 | 3.81E-52 | -1.69E-46 |
| MS.gene059283 | MS.gene065504 | 0.801042 | 1.08E-48 | -1.69E-46 |
| MS.gene059360 | MS.gene065504 | 0.82201 | 2.98E-53 | -1.69E-46 |
| MS.gene059830 | MS.gene065504 | 0.822395 | 2.42E-53 | -1.69E-46 |
| MS.gene06010 | MS.gene065504 | 0.828032 | 1.13E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene065504 | 0.811597 | 6.47E-51 | -1.69E-46 |
| MS.gene060191 | MS.gene065504 | 0.815426 | 9.30E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene065504 | 0.804573 | 2.02E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene065504 | 0.807381 | 5.20E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065504.t1 | MTR_5g092720 | 98.077 | 208 | 4 | 0 | 1 | 208 | 1 | 208 | 4.64e-156 | 430 |
| MS.gene065504.t1 | MTR_5g092720 | 97.895 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 6.28e-142 | 395 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065504.t1 | AT1G50670 | 81.250 | 208 | 39 | 0 | 1 | 208 | 1 | 208 | 2.57e-130 | 365 |
| MS.gene065504.t1 | AT1G50670 | 81.250 | 208 | 39 | 0 | 1 | 208 | 1 | 208 | 2.57e-130 | 365 |
| MS.gene065504.t1 | AT1G50670 | 81.250 | 208 | 39 | 0 | 1 | 208 | 1 | 208 | 2.57e-130 | 365 |
Find 51 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTACAATAGGCTGAATT+TGG | 0.239304 | 5.2:+78243900 | None:intergenic |
| TCAATATTAGCAGATTATTA+TGG | 0.285688 | 5.2:-78243338 | MS.gene065504:CDS |
| TGCTCAATTCAGATATGTTA+TGG | 0.290732 | 5.2:-78244957 | MS.gene065504:intron |
| TCTGACCAATGACTCCAATT+TGG | 0.301760 | 5.2:+78242324 | None:intergenic |
| CGATGTGGGGTATGCCAAAT+TGG | 0.302440 | 5.2:-78242338 | MS.gene065504:CDS |
| CAAATTCAGCCTATTGTAAC+TGG | 0.305952 | 5.2:-78243899 | MS.gene065504:CDS |
| AAATATTCTGAAGCATTTCT+TGG | 0.308148 | 5.2:-78243927 | MS.gene065504:CDS |
| CTCAACAGGTCCAATGCTTC+TGG | 0.312074 | 5.2:+78242864 | None:intergenic |
| AACTAACCTCCCCACTTCTC+TGG | 0.356124 | 5.2:+78243867 | None:intergenic |
| ACAAATCGCATCGTGTTGTC+TGG | 0.371459 | 5.2:+78243291 | None:intergenic |
| TCAACTCAGCAGCTTTAGTT+TGG | 0.377147 | 5.2:+78244927 | None:intergenic |
| TCCTCTGGAGCTCCTTCAAC+AGG | 0.382035 | 5.2:+78242919 | None:intergenic |
| GCGGAGCACGCTCAAGCAAC+TGG | 0.402662 | 5.2:-78242036 | MS.gene065504:CDS |
| AATGCTTCAGAATATTTCTC+AGG | 0.446244 | 5.2:+78243933 | None:intergenic |
| TTTAAAGCAATCCCCTCAAC+AGG | 0.447173 | 5.2:+78242850 | None:intergenic |
| GTATGCCAAATTGGAGTCAT+TGG | 0.454845 | 5.2:-78242329 | MS.gene065504:CDS |
| AATATTCTGAAGCATTTCTT+GGG | 0.459533 | 5.2:-78243926 | MS.gene065504:CDS |
| GGTCAGATGTCTCCTGTTGA+AGG | 0.476296 | 5.2:-78242931 | MS.gene065504:intron |
| TTTGTATGGCAAATATGGTC+TGG | 0.488633 | 5.2:+78242890 | None:intergenic |
| ATGGTCTGGTCAAAATCCTC+TGG | 0.495685 | 5.2:+78242904 | None:intergenic |
| TCGTGTTGTCTGGATATCAT+AGG | 0.498959 | 5.2:+78243301 | None:intergenic |
| GTCAAGAATCCAGTTACAAT+AGG | 0.506795 | 5.2:+78243890 | None:intergenic |
| GGAAGGTAATTATTCTGAAA+GGG | 0.508302 | 5.2:-78243165 | MS.gene065504:CDS |
| AGGAAGGTAATTATTCTGAA+AGG | 0.513503 | 5.2:-78243166 | MS.gene065504:CDS |
| CAGAAGCATTGGACCTGTTG+AGG | 0.521801 | 5.2:-78242863 | MS.gene065504:CDS |
| CCCACATCGTAGAGTGAAGT+TGG | 0.523150 | 5.2:+78242352 | None:intergenic |
| ACTAACCTCCCCACTTCTCT+GGG | 0.530654 | 5.2:+78243868 | None:intergenic |
| AGAAGCATTGGACCTGTTGA+GGG | 0.539369 | 5.2:-78242862 | MS.gene065504:CDS |
| TAAAGCTGCTGAGTTGAGAC+AGG | 0.540696 | 5.2:-78244921 | MS.gene065504:intron |
| ACGATGCGATTTGTACGGTC+AGG | 0.543026 | 5.2:-78243282 | MS.gene065504:intron |
| CCAACTTCACTCTACGATGT+GGG | 0.545015 | 5.2:-78242352 | MS.gene065504:CDS |
| GATTCTTGACCCAGAGAAGT+GGG | 0.546552 | 5.2:-78243877 | MS.gene065504:CDS |
| TCCTGTTGAAGGAGCTCCAG+AGG | 0.552078 | 5.2:-78242920 | MS.gene065504:CDS |
| ATACAAAAGACCAGAAGCAT+TGG | 0.561507 | 5.2:-78242874 | MS.gene065504:CDS |
| AATTGGAGTCATTGGTCAGA+AGG | 0.571915 | 5.2:-78242321 | MS.gene065504:intron |
| GAATTGAGGACTACCTATGT+TGG | 0.572934 | 5.2:+78242815 | None:intergenic |
| TAGAGTGAAGTTGGCAGTGT+CGG | 0.574302 | 5.2:+78242361 | None:intergenic |
| GGATTCTTGACCCAGAGAAG+TGG | 0.579954 | 5.2:-78243878 | MS.gene065504:CDS |
| TGAATATATTCAGGAGGCAG+CGG | 0.588506 | 5.2:-78242055 | MS.gene065504:intron |
| ACAACACGATGCGATTTGTA+CGG | 0.591398 | 5.2:-78243287 | MS.gene065504:CDS |
| AAAAGACAACTATTATCAGA+AGG | 0.594601 | 5.2:+78245075 | None:intergenic |
| GGAAGGTGTTGTTGTGAGAA+GGG | 0.595151 | 5.2:-78245103 | MS.gene065504:CDS |
| TGGAAGGTGTTGTTGTGAGA+AGG | 0.603137 | 5.2:-78245104 | MS.gene065504:CDS |
| TATACAATCTAAATCATGGA+AGG | 0.603573 | 5.2:-78245120 | None:intergenic |
| GCCAACTTCACTCTACGATG+TGG | 0.618112 | 5.2:-78242353 | MS.gene065504:CDS |
| GAAGCATTGGACCTGTTGAG+GGG | 0.634365 | 5.2:-78242861 | MS.gene065504:CDS |
| AGGGTGATGCTGATTTATGA+TGG | 0.634654 | 5.2:-78243146 | MS.gene065504:CDS |
| CTTGACCCAGAGAAGTGGGG+AGG | 0.656264 | 5.2:-78243873 | MS.gene065504:intron |
| CAACTTCACTCTACGATGTG+GGG | 0.662033 | 5.2:-78242351 | MS.gene065504:CDS |
| ATACAGCTAAAGCATCGTAG+TGG | 0.669725 | 5.2:+78243120 | None:intergenic |
| ATTCTTGACCCAGAGAAGTG+GGG | 0.684824 | 5.2:-78243876 | MS.gene065504:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTACTTATATTTAAAAC+CGG | - | chr5.2:78242957-78242976 | MS.gene065504:intron | 10.0% |
| !! | AAACTTCAAATTATCATATA+TGG | - | chr5.2:78242774-78242793 | MS.gene065504:intron | 15.0% |
| !! | AGTAAAAATGTATATGTATT+TGG | + | chr5.2:78242945-78242964 | None:intergenic | 15.0% |
| !! | ATTCTTATTGAATCTTTATA+TGG | - | chr5.2:78244317-78244336 | MS.gene065504:intron | 15.0% |
| !!! | AATGTCATTTTTAAGTAAAT+AGG | + | chr5.2:78244899-78244918 | None:intergenic | 15.0% |
| !!! | TAAAAATATTTCACTTTTCA+AGG | + | chr5.2:78244088-78244107 | None:intergenic | 15.0% |
| !! | AAATGTGTATTCGTTATTTA+AGG | + | chr5.2:78242723-78242742 | None:intergenic | 20.0% |
| !! | AACATAAAAATGAGTTTCAA+AGG | - | chr5.2:78243636-78243655 | MS.gene065504:intron | 20.0% |
| !! | AATAGATGATTAGTAATTTC+TGG | + | chr5.2:78244032-78244051 | None:intergenic | 20.0% |
| !! | ACATAAAAATGAGTTTCAAA+GGG | - | chr5.2:78243637-78243656 | MS.gene065504:intron | 20.0% |
| !! | GTCAGAATTATAAAAATTAC+AGG | + | chr5.2:78245020-78245039 | None:intergenic | 20.0% |
| !! | TAAAGATTCAATAAGAATTG+AGG | + | chr5.2:78244315-78244334 | None:intergenic | 20.0% |
| !! | TAAATATATACCAAGTACAT+AGG | - | chr5.2:78243445-78243464 | MS.gene065504:intron | 20.0% |
| !! | TATAAAAATTACAGGTAAGT+AGG | + | chr5.2:78245012-78245031 | None:intergenic | 20.0% |
| !! | TCAATATTAGCAGATTATTA+TGG | - | chr5.2:78243775-78243794 | MS.gene065504:intron | 20.0% |
| !! | TCTAAATCATCCTAAAATTA+TGG | + | chr5.2:78243378-78243397 | None:intergenic | 20.0% |
| !!! | ATAAGGTTTCTCTTATTTTT+CGG | - | chr5.2:78244379-78244398 | MS.gene065504:intron | 20.0% |
| !!! | ATGACCAGAATTTTAAAAAT+AGG | + | chr5.2:78242385-78242404 | None:intergenic | 20.0% |
| !!! | ATTTTATTAAAGACCAACAT+AGG | - | chr5.2:78244285-78244304 | MS.gene065504:intron | 20.0% |
| !!! | ATTTTTCTGTGAATATATTC+AGG | - | chr5.2:78245049-78245068 | MS.gene065504:intron | 20.0% |
| !!! | CTATTAGTTTTTCATTAGTT+TGG | - | chr5.2:78243700-78243719 | MS.gene065504:intron | 20.0% |
| !!! | TGAACTATAGATTTAGATTT+TGG | - | chr5.2:78244482-78244501 | MS.gene065504:intron | 20.0% |
| !!! | TGACCAGAATTTTAAAAATA+GGG | + | chr5.2:78242384-78242403 | None:intergenic | 20.0% |
| !!! | TGTTATATTTTACATGCTAA+AGG | - | chr5.2:78243131-78243150 | MS.gene065504:CDS | 20.0% |
| ! | AAAAGACAACTATTATCAGA+AGG | + | chr5.2:78242041-78242060 | None:intergenic | 25.0% |
| ! | AAAGTCATATTTGAACATCT+AGG | - | chr5.2:78243521-78243540 | MS.gene065504:intron | 25.0% |
| ! | AACTGAAATTAGGAAAAACA+AGG | + | chr5.2:78243059-78243078 | None:intergenic | 25.0% |
| ! | AATACGTTGATATGTATGTT+TGG | - | chr5.2:78242538-78242557 | MS.gene065504:intron | 25.0% |
| ! | ACCAATTTAGTTACTGAAAT+AGG | + | chr5.2:78244972-78244991 | None:intergenic | 25.0% |
| ! | ACTGAAATTAGGAAAAACAA+GGG | + | chr5.2:78243058-78243077 | None:intergenic | 25.0% |
| ! | ATCATTAGGCAACATAAAAA+TGG | + | chr5.2:78244149-78244168 | None:intergenic | 25.0% |
| ! | CTCTATAACAGAAAATTCTT+CGG | - | chr5.2:78244939-78244958 | MS.gene065504:CDS | 25.0% |
| ! | GTTGTGTACTTCTATATATA+AGG | - | chr5.2:78244362-78244381 | MS.gene065504:intron | 25.0% |
| ! | TCCTATTTCAGTAACTAAAT+TGG | - | chr5.2:78244968-78244987 | MS.gene065504:intron | 25.0% |
| ! | TTAGTAGAAAACTAGATACA+AGG | - | chr5.2:78242313-78242332 | MS.gene065504:intron | 25.0% |
| !! | AATTTAAAACAGCCATGATT+CGG | + | chr5.2:78243284-78243303 | None:intergenic | 25.0% |
| !! | ACTTATATTTAAAACCGGAA+GGG | - | chr5.2:78242962-78242981 | MS.gene065504:intron | 25.0% |
| !! | TACTTATATTTAAAACCGGA+AGG | - | chr5.2:78242961-78242980 | MS.gene065504:intron | 25.0% |
| !!! | AAATATTCTGAAGCATTTCT+TGG | - | chr5.2:78243186-78243205 | MS.gene065504:intron | 25.0% |
| !!! | AATATTCTGAAGCATTTCTT+GGG | - | chr5.2:78243187-78243206 | MS.gene065504:intron | 25.0% |
| !!! | CACATTTGATTGTTTTTCTT+TGG | - | chr5.2:78242736-78242755 | MS.gene065504:intron | 25.0% |
| !!! | GGACTCTAAAATCATTAATT+TGG | - | chr5.2:78242563-78242582 | MS.gene065504:intron | 25.0% |
| !!! | TAAGGTTTCTCTTATTTTTC+GGG | - | chr5.2:78244380-78244399 | MS.gene065504:intron | 25.0% |
| !!! | TCTCCCTATTTTTAAAATTC+TGG | - | chr5.2:78242378-78242397 | MS.gene065504:CDS | 25.0% |
| !!! | TTAAGTACCAAAAGTTTTGT+CGG | - | chr5.2:78243593-78243612 | MS.gene065504:intron | 25.0% |
| AACTCTTCTGTTTGCAAATT+TGG | - | chr5.2:78243667-78243686 | MS.gene065504:intron | 30.0% | |
| AACTTAACAAGCATAAACGA+AGG | + | chr5.2:78242353-78242372 | None:intergenic | 30.0% | |
| AATGCTTCAGAATATTTCTC+AGG | + | chr5.2:78243183-78243202 | None:intergenic | 30.0% | |
| AGGAAGGTAATTATTCTGAA+AGG | - | chr5.2:78243947-78243966 | MS.gene065504:CDS | 30.0% | |
| ATCACATAAAGCAAAGAATC+AGG | + | chr5.2:78244831-78244850 | None:intergenic | 30.0% | |
| CAATGCATGTTATGTCAATT+TGG | - | chr5.2:78242281-78242300 | MS.gene065504:intron | 30.0% | |
| CTAATGATTACTCCTTGTAT+GGG | - | chr5.2:78244161-78244180 | MS.gene065504:intron | 30.0% | |
| GAACTGAAAATAATCAGAGA+AGG | + | chr5.2:78242820-78242839 | None:intergenic | 30.0% | |
| GCTTGACATCTACAAAATTA+AGG | - | chr5.2:78244109-78244128 | MS.gene065504:intron | 30.0% | |
| GGTATTACACAGTAATACAT+AGG | - | chr5.2:78242844-78242863 | MS.gene065504:CDS | 30.0% | |
| GTAATCAGCAAAAACAAGAA+CGG | + | chr5.2:78243920-78243939 | None:intergenic | 30.0% | |
| TGAGCAAAGAATATTACAAG+TGG | + | chr5.2:78242123-78242142 | None:intergenic | 30.0% | |
| TGCTCAATTCAGATATGTTA+TGG | - | chr5.2:78242156-78242175 | MS.gene065504:intron | 30.0% | |
| TTATCAAAAGCCAAAGTGTA+AGG | + | chr5.2:78243413-78243432 | None:intergenic | 30.0% | |
| TTCCTAATTTCAGTTCTCTT+TGG | - | chr5.2:78243064-78243083 | MS.gene065504:intron | 30.0% | |
| TTTCTGTGAATATATTCAGG+AGG | - | chr5.2:78245052-78245071 | MS.gene065504:intron | 30.0% | |
| TTTGCTTTATGTGATATGCA+TGG | - | chr5.2:78244836-78244855 | MS.gene065504:intron | 30.0% | |
| ! | AAACACTTTTACTAGCACAA+TGG | + | chr5.2:78244583-78244602 | None:intergenic | 30.0% |
| ! | AGTTGTCTTTTTAATGCAGT+TGG | - | chr5.2:78242050-78242069 | MS.gene065504:intron | 30.0% |
| ! | ATTTTCTACTCAACCTAGTT+TGG | - | chr5.2:78244633-78244652 | MS.gene065504:intron | 30.0% |
| ! | CTTATATTTAAAACCGGAAG+GGG | - | chr5.2:78242963-78242982 | MS.gene065504:intron | 30.0% |
| ! | GGAAGGTAATTATTCTGAAA+GGG | - | chr5.2:78243948-78243967 | MS.gene065504:CDS | 30.0% |
| ! | GTTGTCTTTTTAATGCAGTT+GGG | - | chr5.2:78242051-78242070 | MS.gene065504:intron | 30.0% |
| !! | AATATTTCACTTTTCAAGGC+AGG | + | chr5.2:78244084-78244103 | None:intergenic | 30.0% |
| !! | ATTGATTTTCTCTCACACTT+CGG | - | chr5.2:78244049-78244068 | MS.gene065504:intron | 30.0% |
| !! | ATTGTGCTAGTAAAAGTGTT+TGG | - | chr5.2:78244582-78244601 | MS.gene065504:intron | 30.0% |
| !! | TTTTGCTGATTACTTTTGAC+AGG | - | chr5.2:78243927-78243946 | MS.gene065504:CDS | 30.0% |
| AAGCAAAGAATCAGGTACTT+AGG | + | chr5.2:78244823-78244842 | None:intergenic | 35.0% | |
| ATTTGGTACTAGAACACCAT+GGG | + | chr5.2:78242928-78242947 | None:intergenic | 35.0% | |
| CAAATTCAGCCTATTGTAAC+TGG | - | chr5.2:78243214-78243233 | MS.gene065504:intron | 35.0% | |
| CACCAAAGAGAACTGAAATT+AGG | + | chr5.2:78243069-78243088 | None:intergenic | 35.0% | |
| CAGTTACAATAGGCTGAATT+TGG | + | chr5.2:78243216-78243235 | None:intergenic | 35.0% | |
| CCAACTTGGTTAAATGTACT+TGG | - | chr5.2:78242451-78242470 | MS.gene065504:intron | 35.0% | |
| CCAAGTACATTTAACCAAGT+TGG | + | chr5.2:78242454-78242473 | None:intergenic | 35.0% | |
| CCATACAAGGAGTAATCATT+AGG | + | chr5.2:78244163-78244182 | None:intergenic | 35.0% | |
| CCTAATGATTACTCCTTGTA+TGG | - | chr5.2:78244160-78244179 | MS.gene065504:intron | 35.0% | |
| CTAATGTACTCCTATGTACT+TGG | + | chr5.2:78243458-78243477 | None:intergenic | 35.0% | |
| CTATGAGAATCCTTACACTT+TGG | - | chr5.2:78243400-78243419 | MS.gene065504:intron | 35.0% | |
| CTATGGATATGCAAAGTGAA+TGG | - | chr5.2:78242228-78242247 | MS.gene065504:intron | 35.0% | |
| CTCAAGATGATAACCAAACT+AGG | + | chr5.2:78244649-78244668 | None:intergenic | 35.0% | |
| GTATTACTGTGTAATACCTC+AGG | + | chr5.2:78242842-78242861 | None:intergenic | 35.0% | |
| GTCAAGAATCCAGTTACAAT+AGG | + | chr5.2:78243226-78243245 | None:intergenic | 35.0% | |
| GTCATATTTGAACATCTAGG+AGG | - | chr5.2:78243524-78243543 | MS.gene065504:intron | 35.0% | |
| TACTGGAAGCAGAATTAATC+CGG | + | chr5.2:78244680-78244699 | None:intergenic | 35.0% | |
| TAGTTACTGAAATAGGAACG+TGG | + | chr5.2:78244965-78244984 | None:intergenic | 35.0% | |
| TATTTGGTACTAGAACACCA+TGG | + | chr5.2:78242929-78242948 | None:intergenic | 35.0% | |
| TTCAGATGTTGTATCCAACT+TGG | - | chr5.2:78242437-78242456 | MS.gene065504:intron | 35.0% | |
| TTTGTATGGCAAATATGGTC+TGG | + | chr5.2:78244226-78244245 | None:intergenic | 35.0% | |
| ! | ATACAAAAGACCAGAAGCAT+TGG | - | chr5.2:78244239-78244258 | MS.gene065504:intron | 35.0% |
| ! | CAGGTGATTTTTCTTTGCTA+TGG | - | chr5.2:78242211-78242230 | MS.gene065504:intron | 35.0% |
| ! | CGGTGTTCTACCATAATTTT+AGG | - | chr5.2:78243365-78243384 | MS.gene065504:intron | 35.0% |
| ! | CTGATTATTTTCAGTTCCTG+AGG | - | chr5.2:78242823-78242842 | MS.gene065504:intron | 35.0% |
| ! | GGTCTTTTGTATGGCAAATA+TGG | + | chr5.2:78244231-78244250 | None:intergenic | 35.0% |
| ! | GTTTTTCTTTGGCAAAAGCT+TGG | - | chr5.2:78242747-78242766 | MS.gene065504:intron | 35.0% |
| ! | TTCAGAACCGACAAAACTTT+TGG | + | chr5.2:78243603-78243622 | None:intergenic | 35.0% |
| ! | TTGATTTTCTCTCACACTTC+GGG | - | chr5.2:78244050-78244069 | MS.gene065504:intron | 35.0% |
| ! | TTTAAGACTTACCAGCGAAT+CGG | - | chr5.2:78243023-78243042 | MS.gene065504:intron | 35.0% |
| !! | AATGCTTCTGGTCTTTTGTA+TGG | + | chr5.2:78244240-78244259 | None:intergenic | 35.0% |
| !! | CAAGTTAGAACTGCTACTTT+CGG | - | chr5.2:78243345-78243364 | MS.gene065504:CDS | 35.0% |
| !!! | TTTTCGGGTGTGTGTATTTA+AGG | - | chr5.2:78244395-78244414 | MS.gene065504:intron | 35.0% |
| !!! | TTTTGTCGGTTCTGAATTTG+TGG | - | chr5.2:78243607-78243626 | MS.gene065504:intron | 35.0% |
| AACGGAAAGGTTCAGTTACT+AGG | + | chr5.2:78243902-78243921 | None:intergenic | 40.0% | |
| AAGTGTTTGGTTGTCTTGCA+TGG | - | chr5.2:78244595-78244614 | MS.gene065504:intron | 40.0% | |
| AATCATTTGTACCAAGCTGG+GGG | + | chr5.2:78242100-78242119 | None:intergenic | 40.0% | |
| AATTGGAGTCATTGGTCAGA+AGG | - | chr5.2:78244792-78244811 | MS.gene065504:intron | 40.0% | |
| ACAACACGATGCGATTTGTA+CGG | - | chr5.2:78243826-78243845 | MS.gene065504:intron | 40.0% | |
| ACGGAAAGGTTCAGTTACTA+GGG | + | chr5.2:78243901-78243920 | None:intergenic | 40.0% | |
| AGGGTCCAAAATATTAGCAC+TGG | + | chr5.2:78244709-78244728 | None:intergenic | 40.0% | |
| ATGTATGTTGTCAGCTGTGA+AGG | - | chr5.2:78244546-78244565 | MS.gene065504:intron | 40.0% | |
| CAGCAAAAACAAGAACGGAA+AGG | + | chr5.2:78243915-78243934 | None:intergenic | 40.0% | |
| CCAAAAAGAAATACCCCTTC+CGG | + | chr5.2:78242979-78242998 | None:intergenic | 40.0% | |
| CGTTGATATGTATGTTTGGC+TGG | - | chr5.2:78242542-78242561 | MS.gene065504:intron | 40.0% | |
| GAAGCTATATTCCGTTGTGA+AGG | - | chr5.2:78243739-78243758 | MS.gene065504:intron | 40.0% | |
| GAATCATTTGTACCAAGCTG+GGG | + | chr5.2:78242101-78242120 | None:intergenic | 40.0% | |
| GAATTGAGGACTACCTATGT+TGG | + | chr5.2:78244301-78244320 | None:intergenic | 40.0% | |
| GACTTATGTCTTCCGAATCA+TGG | - | chr5.2:78243269-78243288 | MS.gene065504:intron | 40.0% | |
| GGAATCATTTGTACCAAGCT+GGG | + | chr5.2:78242102-78242121 | None:intergenic | 40.0% | |
| GTATGCCAAATTGGAGTCAT+TGG | - | chr5.2:78244784-78244803 | MS.gene065504:intron | 40.0% | |
| TCGTGTTGTCTGGATATCAT+AGG | + | chr5.2:78243815-78243834 | None:intergenic | 40.0% | |
| TCTGACCAATGACTCCAATT+TGG | + | chr5.2:78244792-78244811 | None:intergenic | 40.0% | |
| TGAATATATTCAGGAGGCAG+CGG | - | chr5.2:78245058-78245077 | MS.gene065504:intron | 40.0% | |
| TGGAATCATTTGTACCAAGC+TGG | + | chr5.2:78242103-78242122 | None:intergenic | 40.0% | |
| TTTGGTACTAGAACACCATG+GGG | + | chr5.2:78242927-78242946 | None:intergenic | 40.0% | |
| ! | ATCATCTTGAGTTGCATCTC+CGG | - | chr5.2:78244658-78244677 | MS.gene065504:intron | 40.0% |
| ! | CCAAAATATTAGCACTGGAG+AGG | + | chr5.2:78244704-78244723 | None:intergenic | 40.0% |
| ! | CCTCTCCAGTGCTAATATTT+TGG | - | chr5.2:78244701-78244720 | MS.gene065504:intron | 40.0% |
| ! | TCAACTCAGCAGCTTTAGTT+TGG | + | chr5.2:78242189-78242208 | None:intergenic | 40.0% |
| ! | TTTAAAGCAATCCCCTCAAC+AGG | + | chr5.2:78244266-78244285 | None:intergenic | 40.0% |
| !! | AGGGTGATGCTGATTTATGA+TGG | - | chr5.2:78243967-78243986 | MS.gene065504:intron | 40.0% |
| !! | ATACAGCTAAAGCATCGTAG+TGG | + | chr5.2:78243996-78244015 | None:intergenic | 40.0% |
| !! | GCTGATTACTTTTGACAGGA+AGG | - | chr5.2:78243931-78243950 | MS.gene065504:CDS | 40.0% |
| !! | TATTTTGGACCCTCATTCTC+AGG | - | chr5.2:78244716-78244735 | MS.gene065504:intron | 40.0% |
| !! | TGGGGGTGCTATAAAGAAAA+AGG | + | chr5.2:78242083-78242102 | None:intergenic | 40.0% |
| ACAAATCGCATCGTGTTGTC+TGG | + | chr5.2:78243825-78243844 | None:intergenic | 45.0% | |
| AGTCCTGAAATTGTGCGTGT+AGG | - | chr5.2:78244873-78244892 | MS.gene065504:intron | 45.0% | |
| ATCTCCGTTTCCTGAGAATG+AGG | + | chr5.2:78244729-78244748 | None:intergenic | 45.0% | |
| ATGGTCTGGTCAAAATCCTC+TGG | + | chr5.2:78244212-78244231 | None:intergenic | 45.0% | |
| ATTCTTGACCCAGAGAAGTG+GGG | - | chr5.2:78243237-78243256 | MS.gene065504:intron | 45.0% | |
| CAACTTCACTCTACGATGTG+GGG | - | chr5.2:78244762-78244781 | MS.gene065504:intron | 45.0% | |
| CCAACTTCACTCTACGATGT+GGG | - | chr5.2:78244761-78244780 | MS.gene065504:intron | 45.0% | |
| GATTCTTGACCCAGAGAAGT+GGG | - | chr5.2:78243236-78243255 | MS.gene065504:intron | 45.0% | |
| GTTCAATCGCACCTTCACAA+CGG | + | chr5.2:78243753-78243772 | None:intergenic | 45.0% | |
| TAGAGTGAAGTTGGCAGTGT+CGG | + | chr5.2:78244755-78244774 | None:intergenic | 45.0% | |
| TCTCCGTTTCCTGAGAATGA+GGG | + | chr5.2:78244728-78244747 | None:intergenic | 45.0% | |
| TCTGCAACAGTCAGTTGTTG+TGG | - | chr5.2:78243561-78243580 | MS.gene065504:intron | 45.0% | |
| TTGGTACTAGAACACCATGG+GGG | + | chr5.2:78242926-78242945 | None:intergenic | 45.0% | |
| ! | ATTAGCACTGGAGAGGATAC+TGG | + | chr5.2:78244697-78244716 | None:intergenic | 45.0% |
| ! | GGATTAAAGTTCCGATTCGC+TGG | + | chr5.2:78243037-78243056 | None:intergenic | 45.0% |
| ! | TAAAGCTGCTGAGTTGAGAC+AGG | - | chr5.2:78242192-78242211 | MS.gene065504:intron | 45.0% |
| !! | AGAAGCATTGGACCTGTTGA+GGG | - | chr5.2:78244251-78244270 | MS.gene065504:intron | 45.0% |
| !! | GGAAGGTGTTGTTGTGAGAA+GGG | - | chr5.2:78242010-78242029 | MS.gene065504:CDS | 45.0% |
| !! | GGGGTTGATGGATGATAGTT+AGG | + | chr5.2:78242907-78242926 | None:intergenic | 45.0% |
| !! | TGGAAGGTGTTGTTGTGAGA+AGG | - | chr5.2:78242009-78242028 | MS.gene065504:CDS | 45.0% |
| !!! | CCGGAAGGGGTATTTCTTTT+TGG | - | chr5.2:78242976-78242995 | MS.gene065504:intron | 45.0% |
| !! | TAAATTATAAAATTGTTTAT+AGG | - | chr5.2:78243298-78243317 | MS.gene065504:CDS | 5.0% |
| AACTAACCTCCCCACTTCTC+TGG | + | chr5.2:78243249-78243268 | None:intergenic | 50.0% | |
| ACGATGCGATTTGTACGGTC+AGG | - | chr5.2:78243831-78243850 | MS.gene065504:intron | 50.0% | |
| ACTAACCTCCCCACTTCTCT+GGG | + | chr5.2:78243248-78243267 | None:intergenic | 50.0% | |
| AGGCCTACACGCACAATTTC+AGG | + | chr5.2:78244879-78244898 | None:intergenic | 50.0% | |
| CCCACATCGTAGAGTGAAGT+TGG | + | chr5.2:78244764-78244783 | None:intergenic | 50.0% | |
| CGATGTGGGGTATGCCAAAT+TGG | - | chr5.2:78244775-78244794 | MS.gene065504:intron | 50.0% | |
| CTATCATCCATCAACCCCCA+TGG | - | chr5.2:78242909-78242928 | MS.gene065504:CDS | 50.0% | |
| CTCAACAGGTCCAATGCTTC+TGG | + | chr5.2:78244252-78244271 | None:intergenic | 50.0% | |
| GCCAACTTCACTCTACGATG+TGG | - | chr5.2:78244760-78244779 | MS.gene065504:intron | 50.0% | |
| GGACCCTCATTCTCAGGAAA+CGG | - | chr5.2:78244722-78244741 | MS.gene065504:intron | 50.0% | |
| GGAGACATCTGACCCATACA+AGG | + | chr5.2:78244176-78244195 | None:intergenic | 50.0% | |
| GGATTCTTGACCCAGAGAAG+TGG | - | chr5.2:78243235-78243254 | MS.gene065504:intron | 50.0% | |
| GGTCAGATGTCTCCTGTTGA+AGG | - | chr5.2:78244182-78244201 | MS.gene065504:intron | 50.0% | |
| TAGAACACCATGGGGGTTGA+TGG | + | chr5.2:78242919-78242938 | None:intergenic | 50.0% | |
| TCTTTATAGCACCCCCAGCT+TGG | - | chr5.2:78242086-78242105 | MS.gene065504:intron | 50.0% | |
| !! | CAGAAGCATTGGACCTGTTG+AGG | - | chr5.2:78244250-78244269 | MS.gene065504:intron | 50.0% |
| !! | GAAGCATTGGACCTGTTGAG+GGG | - | chr5.2:78244252-78244271 | MS.gene065504:intron | 50.0% |
| TCCTGTTGAAGGAGCTCCAG+AGG | - | chr5.2:78244193-78244212 | MS.gene065504:intron | 55.0% | |
| !! | TCCTCTGGAGCTCCTTCAAC+AGG | + | chr5.2:78244197-78244216 | None:intergenic | 55.0% |
| CTTGACCCAGAGAAGTGGGG+AGG | - | chr5.2:78243240-78243259 | MS.gene065504:intron | 60.0% | |
| GCGGAGCACGCTCAAGCAAC+TGG | - | chr5.2:78245077-78245096 | MS.gene065504:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 78242008 | 78245127 | 78242008 | ID=MS.gene065504 |
| chr5.2 | mRNA | 78242008 | 78245127 | 78242008 | ID=MS.gene065504.t1;Parent=MS.gene065504 |
| chr5.2 | exon | 78245063 | 78245127 | 78245063 | ID=MS.gene065504.t1.exon1;Parent=MS.gene065504.t1 |
| chr5.2 | CDS | 78245063 | 78245127 | 78245063 | ID=cds.MS.gene065504.t1;Parent=MS.gene065504.t1 |
| chr5.2 | exon | 78244922 | 78244967 | 78244922 | ID=MS.gene065504.t1.exon2;Parent=MS.gene065504.t1 |
| chr5.2 | CDS | 78244922 | 78244967 | 78244922 | ID=cds.MS.gene065504.t1;Parent=MS.gene065504.t1 |
| chr5.2 | exon | 78243874 | 78243982 | 78243874 | ID=MS.gene065504.t1.exon3;Parent=MS.gene065504.t1 |
| chr5.2 | CDS | 78243874 | 78243982 | 78243874 | ID=cds.MS.gene065504.t1;Parent=MS.gene065504.t1 |
| chr5.2 | exon | 78243283 | 78243374 | 78243283 | ID=MS.gene065504.t1.exon4;Parent=MS.gene065504.t1 |
| chr5.2 | CDS | 78243283 | 78243374 | 78243283 | ID=cds.MS.gene065504.t1;Parent=MS.gene065504.t1 |
| chr5.2 | exon | 78243124 | 78243186 | 78243124 | ID=MS.gene065504.t1.exon5;Parent=MS.gene065504.t1 |
| chr5.2 | CDS | 78243124 | 78243186 | 78243124 | ID=cds.MS.gene065504.t1;Parent=MS.gene065504.t1 |
| chr5.2 | exon | 78242829 | 78242947 | 78242829 | ID=MS.gene065504.t1.exon6;Parent=MS.gene065504.t1 |
| chr5.2 | CDS | 78242829 | 78242947 | 78242829 | ID=cds.MS.gene065504.t1;Parent=MS.gene065504.t1 |
| chr5.2 | exon | 78242322 | 78242397 | 78242322 | ID=MS.gene065504.t1.exon7;Parent=MS.gene065504.t1 |
| chr5.2 | CDS | 78242322 | 78242397 | 78242322 | ID=cds.MS.gene065504.t1;Parent=MS.gene065504.t1 |
| chr5.2 | exon | 78242008 | 78242064 | 78242008 | ID=MS.gene065504.t1.exon8;Parent=MS.gene065504.t1 |
| chr5.2 | CDS | 78242008 | 78242064 | 78242008 | ID=cds.MS.gene065504.t1;Parent=MS.gene065504.t1 |
| Gene Sequence |
| Protein sequence |
