AlfalfaGEDB | MS.gene065846

M. sativa cultivar XinJiangDaYe / MS.gene065846

KEGG: -
GO: -
PFAM: PF02681.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065846.t1	XP_003595876.1	95.1	283	10	1	1	283	1	279	4.60E-140	507.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065846.t1	O32107	33.6	122	68	2	88	209	28	136	1.3e-10	68.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065846.t1	G7IT34	95.1	283	10	1	1	283	1	279	3.3e-140	507.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049170	MS.gene065846	0.861345	1.10E-63	-1.69E-46
MS.gene050060	MS.gene065846	0.844894	5.70E-59	-1.69E-46
MS.gene050404	MS.gene065846	0.805883	1.08E-49	-1.69E-46
MS.gene050406	MS.gene065846	0.804405	2.20E-49	-1.69E-46
MS.gene050426	MS.gene065846	-0.834444	2.99E-56	-1.69E-46
MS.gene050529	MS.gene065846	0.823562	1.30E-53	-1.69E-46
MS.gene050642	MS.gene065846	0.827582	1.44E-54	-1.69E-46
MS.gene050670	MS.gene065846	0.820932	5.28E-53	-1.69E-46
MS.gene050971	MS.gene065846	0.835664	1.47E-56	-1.69E-46
MS.gene051525	MS.gene065846	0.806143	9.49E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065846.t1	MTR_2g062820	95.053	283	10	1	1	283	1	279	0.0	540
MS.gene065846.t1	MTR_3g085670	40.367	109	64	1	62	170	14	121	9.82e-20	84.3
MS.gene065846.t1	MTR_2g087870	36.607	112	70	1	65	176	26	136	6.03e-18	79.7
MS.gene065846.t1	MTR_2g087870	40.000	100	59	1	65	164	26	124	7.87e-16	73.2
MS.gene065846.t1	MTR_7g117385	31.356	118	80	1	59	176	104	220	1.20e-13	69.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065846.t1	AT3G12685	45.570	237	70	5	46	282	35	212	5.18e-59	187
MS.gene065846.t1	AT1G24350	38.679	106	64	1	65	170	22	126	1.28e-18	80.9
MS.gene065846.t1	AT1G24350	38.679	106	64	1	65	170	22	126	1.30e-18	80.9
MS.gene065846.t1	AT1G24350	38.679	106	64	1	65	170	22	126	1.88e-18	80.5
MS.gene065846.t1	AT1G24350	38.679	106	64	1	65	170	22	126	5.21e-18	79.7
MS.gene065846.t1	AT1G24350	38.679	106	64	1	65	170	22	126	6.18e-18	80.1
MS.gene065846.t1	AT3G21610	38.318	107	65	1	64	170	32	137	9.45e-18	79.3
MS.gene065846.t1	AT1G67600	36.792	106	66	1	65	170	18	122	1.63e-16	75.5
MS.gene065846.t1	AT3G21610	41.772	79	46	0	92	170	7	85	1.50e-15	72.0
MS.gene065846.t1	AT3G61770	32.203	118	79	1	59	176	134	250	4.10e-14	71.2

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Find 53 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGCTCTTATTCAAGCTGG+AGG	0.574041	2.2:-26894247	MS.gene065846:CDS
AAGTGGTTTCTTGGAACAAA+AGG	0.368554	2.2:+26891418	None:intergenic
AATTGTTGATGATGAAGAAA+TGG	0.414445	2.2:+26895049	None:intergenic
ACAAATGTATTAGTTAAATC+AGG	0.423899	2.2:-26891372	MS.gene065846:CDS
ACATTTGTATTAGCTTGTTG+TGG	0.534702	2.2:+26891387	None:intergenic
ACCATCAGCAACCAACTTTG+AGG	0.444572	2.2:+26891284	None:intergenic
ACCTCAAAGTTGGTTGCTGA+TGG	0.525196	2.2:-26891285	MS.gene065846:CDS
ACTGAGGTTGAAGTTGTAGC+TGG	0.595839	2.2:-26891231	MS.gene065846:CDS
AGAAACTGTTGGTCATACTG+AGG	0.680359	2.2:-26891247	MS.gene065846:CDS
AGCAAGAGAAGAAATTCTAA+AGG	0.529822	2.2:+26894991	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATTGTCCATAGTCAA+TGG	-	chr2.2:26893558-26893577	MS.gene065846:intron	30.0%
AAAATCGATCTATACGATGA+GGG	+	chr2.2:26891847-26891866	None:intergenic	30.0%
AAAGCTTAAAAGCCTTCAAT+AGG	-	chr2.2:26893288-26893307	MS.gene065846:intron	30.0%
AATATATCCTCTACGTATAC+AGG	+	chr2.2:26893374-26893393	None:intergenic	30.0%
ACGATCATACAATTCAGAAT+GGG	-	chr2.2:26893887-26893906	MS.gene065846:CDS	30.0%
AGCAAGAGAAGAAATTCTAA+AGG	+	chr2.2:26891315-26891334	None:intergenic	30.0%
AGGTTCTACAAAGAAAAGAA+TGG	-	chr2.2:26892959-26892978	MS.gene065846:intron	30.0%
AGTTTAATGGTGTGATTTAG+AGG	-	chr2.2:26894394-26894413	MS.gene065846:intron	30.0%
ATAATTACAGGGTGAACAAA+AGG	+	chr2.2:26893526-26893545	None:intergenic	30.0%
ATAGGAAACTTAGCAAATGA+AGG	-	chr2.2:26892939-26892958	MS.gene065846:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	26891182	26895143	26891182	ID=MS.gene065846
chr2.2	mRNA	26891182	26895143	26891182	ID=MS.gene065846.t1;Parent=MS.gene065846
chr2.2	exon	26894946	26895143	26894946	ID=MS.gene065846.t1.exon1;Parent=MS.gene065846.t1
chr2.2	CDS	26894946	26895143	26894946	ID=cds.MS.gene065846.t1;Parent=MS.gene065846.t1
chr2.2	exon	26894225	26894359	26894225	ID=MS.gene065846.t1.exon2;Parent=MS.gene065846.t1
chr2.2	CDS	26894225	26894359	26894225	ID=cds.MS.gene065846.t1;Parent=MS.gene065846.t1
chr2.2	exon	26894073	26894110	26894073	ID=MS.gene065846.t1.exon3;Parent=MS.gene065846.t1
chr2.2	CDS	26894073	26894110	26894073	ID=cds.MS.gene065846.t1;Parent=MS.gene065846.t1
chr2.2	exon	26893883	26893949	26893883	ID=MS.gene065846.t1.exon4;Parent=MS.gene065846.t1
chr2.2	CDS	26893883	26893949	26893883	ID=cds.MS.gene065846.t1;Parent=MS.gene065846.t1
chr2.2	exon	26891182	26891595	26891182	ID=MS.gene065846.t1.exon5;Parent=MS.gene065846.t1
chr2.2	CDS	26891182	26891595	26891182	ID=cds.MS.gene065846.t1;Parent=MS.gene065846.t1

Gene Sequence

>MS.gene065846

ATGATGTTGTTGCAACAATCAAATTTCTGTCTCATTCCTTCTTCTCAATTTCCCTCACTCAAACAAAGAAATCCATTTCTTCATCATCAACAATTTCCATTCAGTTTTCGTAGAAAGGATAAAGCTTCTACCTTTAGAATTTCTTCTCTTGCTGCTGCTGGTTTTTTCAATGATGTCGCTCAAATTGCTCATAATAAGGTATCCCATTTTTGTATCACTTGTTTTTATGTCTCTGCAAATCTTGGGTTTTGCTCAAAATTCTGTTTTTGTTATTTGTTTTTTAAGCTAGCTATTGAGAATTCCAATTAGATGAGCACAACGTACCGACACTTTTGATCAAAGGCGTGGCCATTATATGACCGGCGCATGTCATTACATTCAATTATATGATACATGATTTTCTCAAATAATTATTGGTAACCCGGGTTGTGTTATGTGTCTGTGTCCGTGCTTCATAGGATATCATATGACCTAAACATGTTCTCAAAAACGTGTTTTAAGATGGTATTAGAGTCTATCAAATATTCGTTAGGCTACTTTTACACACTATCGGGACACTCATGTTACACGCCATATGTTTAGTCGTGGGCGTGAAGAGTGTGTTGAGAGTCCACATTGGATGAGATATAGTCTGAAAAATGTGTTTATAAGTGGGGAGACATCCCTCATCGTATAGATCGATTTTGTAGGTTTTAGTTTAGTCTAATCCAAATTTTATATTGTTTTGTTGTTTCATTTGCTGAATTGGGATTTGTGTTCTCATTTGTGATATTTTTTTGCTTAGGTTCTGATTGCAGCTGGAGTTTCAATGGCAATTGGGCAACTTTCTAAGCCATTTACTTCTGTGTTTCTGTATGGCAAAGAGTTTGATATCAAGGCTCTTATTCAAGCTGGAGGGTTCCCATCATCACACTCTTCTGTATGAACTTGAAACCCTTAACCAGTAAATCCTACTTTCATTTCATCTATGCCACTTGAATAGTGCTGTTTCACTTTTATTCTCACATAGTTGTTTAAATTTTCTTTTGGATAGGCAACAGTGGCTTGTGCAACATTACTTGGCCTTGAGAGGTAAGATAATTCAGTTATGCTGACTTAGTATGGCATTTTTCTCTGCACTCTTTTGAAAATTGCAATTTTCTTAAGAATATAATGTTTCTGTGTTATTTTTAATTGTTTATTATACAAATGCAGAGGCCTGTCAGATCCCATTTTTGGTCTTGCAGTTGTGTATGCTGGTCTGATTATGTATGATGCTCAGGTGTGATGTTCTTCTCAGATCCCATTTTTCATGTTATTTAGTTTGTGTACCCGTATCAGTCTTTTGATGTGCCCTTTTGACTATGCTAGGATTCCACTGTACTTAGACTATGTCAAACTTAATGAAGGAATCTTAGGTCAGATTAAAATTAAGAACTTCCAAGATATTGAGTATATTTGCTGTATGATTGTCTCTAATCAATGATTAAACTATTTGTGGAATTCTTACCATGGTGTTACTGTTAGTAAACAGGAAATGGTCAAACAGAAAATTTCTCATTGATCAAAGAATATTATAAGTAGCGGACTCTCACTCAACAATCAAGCTCAAATTGCAATATACACAATGTTCATTTAGAAATATATTTACAAGATGATCTAACTAGTAGTAAGTAACTACTGAGTTACATAACAATATCGTATCAAACACTCCTTTTGGTCTCATTTGTATAGGATACAACTGTATTGACCTTGTCACTTCATTAACATTTCAACCTATAGGAAACTTAGCAAATGAAGGTTCTACAAAGAAAAGAATGGATGTCACTTAGGGTTGCAAGTGGGAAAGAAATGGTTGTACGGACTTATTTATCTCAGACATGGATTATGGTGAAGATTGATTCATGTTGACGACCCTAACTAATGGAAGAATATTGTTGCTGTATTTTTAGATTACTAACTAATTCAGGTGCCAAATGACATAAAGATGGCCTGAGTCCTCAGATAAAGAAGTCTTTAAAGAGGGTTGATAGTTTGATATGATGTTACCTGCAGATAGATCTGCATCTGGTCATTTAACAACCTTTTCTTATAAAAAAGATTTGATTTCTCAATATAATGTGCTTGAAAGCTTAAAAGCCTTCAATAGGCTATCCTATTGAGCAGCCTGAAACAATCCTTACAACATAGAAATCTTATTCTAGTCATATCCTGTATACGTAGAGGATATATTGCATGTCTGCACTGACTACTATTCTTAACATTTTTTTTTTTTTTTATCTAAACTTGTCTTCCCTTTTGTTGTTTACTTCACACACAGTAATTTACTTATTTCTTGTGAAGGTTTTTAAACTTCTTGAAACCTTTTGTTCACCCTGTAATTATCCTCACTCTGACAAAACATTGTCCATAGTCAATGGCTTAAGTCTAGAAGACAACTTTTCTTTTGAGCAAATTGATATCGCAGATGAAAACTTATTGGTACTTGTGGCCTCTTTTGATTGACTTATTTGAGCTTATCTACCGACATAAGTATTCGTGAGACTATTTGGAAGGGCTTATGAAAACAGTTTATAATATACCCATAAGCCATTTTGAGCGTATCTCTATAAGTTCTTCAGGATAAACAATTTGACTTAGTTTATCATCTTTTTTTATAGAAATAGCTGATATATAAGCAGTGTTTGTAGAATCGTGAGTATGATGGTGGAATTCACGATCATAGTACGATCATACAATTCAGAATGGGATTTCTGTGCTGCAGTGCCGTTAAGGTTGTATTCTTGGGATCAGTTGAATCAGTGGCAGGATAGCAGAAATCGTGAGTCAGATCACCAAGAAAATTCCCCAATTCGGGTTTTCCGCAAAAAAAAAAAAAAAATCCTGTTTTTTAATGCTCACTGGTGCGGGTTTAGAGAAAAAGCCCATTTTTAAAATTAAAAAGAAAATGGAAACATTCCAGTTTTCTTCATTTTTGTGTTTACGACAAAAGACTGCCACTGAGCGTGTTTCTCTGTTTTCTGCAACTGCCACTGAGAGTGTTTCACCGAGGCGCCACTGTTGCTGTGCTAGTTCTTCTGTTACTTGTGCTGTGGGAGTTTCTTGTTTCTGTTATTTTTTCATGTTAATGTTAATGGCTTCAAACAGTATATTCAAACAGTGCCTCTGTATTTATGATTATGAATTTATTTATGGTTATGTTTATAAACTTATGAGTTTTTGTTTATGAACCTAGTTTAATGGTGTGATTTAGAGGCTATTTTCTTCGTCTATGATAATTTTTATGCATGTGTGTATATAGTTACGATCTATGCCGTGATCAACAAGTTAAGATCTTTCAAACCACTCCCAATCTTGCGCAGACTCTCGATTTTTAAAATATTTTACATAAATACTTATATGATAAGTATTCATGCTGTAAGTGCTTAATTAAGTTGCTTATCCGAACAAGGCCTTATTTATATTATATAAAACCTTTATCCTTTTATCATTCTGTTTCTGTTTATTGAACATGATTGTTTTGTGGGCCTGTTTGGCTTACAATGAAGACTGATTTCTGTGATTTGCAGGGTGTAAGAAGAGAAGTAGGGATTCATGCTAAGACAATCAACAAACTACTTCTCCAAATGGATGTCAACCATGTACATTCCAAATATAAAGAGGGTCTGATAAACTCTCAACCTGGATCATCCAATCCACCAAAAGCAGAAACTCAAGAAAAATCCCTTTTGTTCCAAGAAACCACTTCTTTGGAACCACAACAAGCTAATACAAATGTATTAGTTAAATCAGGAAGCATAATAAGGCAAAGTGACGAGGAGCTACAATCCTCTGATTTCTTAGAAGATGCAAAAGAAACCTCAAAGTTGGTTGCTGATGGTCTACTGCCATTAAAAGAAACTGTTGGTCATACTGAGGTTGAAGTTGTAGCTGGTGGTTTACTTGGATTTTTGGTTGGGCTGGCTGTGTATAATTTGAAGTAA

Protein sequence

>MS.gene065846.t1

MMLLQQSNFCLIPSSQFPSLKQRNPFLHHQQFPFSFRRKDKASTFRISSLAAAGFFNDVAQIAHNKVLIAAGVSMAIGQLSKPFTSVFLYGKEFDIKALIQAGGFPSSHSSATVACATLLGLERGLSDPIFGLAVVYAGLIMYDAQGVRREVGIHAKTINKLLLQMDVNHVHSKYKEGLINSQPGSSNPPKAETQEKSLLFQETTSLEPQQANTNVLVKSGSIIRQSDEELQSSDFLEDAKETSKLVADGLLPLKETVGHTEVEVVAGGLLGFLVGLAVYNLK