AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068456


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068456.t1 MTR_1g077100 71.818 110 26 2 1 107 1 108 1.10e-45 156
MS.gene068456.t1 MTR_4g055725 36.032 247 138 4 135 380 38 265 1.38e-43 155
MS.gene068456.t1 MTR_4g117120 35.928 167 103 3 143 309 122 284 1.90e-24 105
MS.gene068456.t1 MTR_5g022570 54.118 85 36 2 25 107 193 276 9.48e-20 90.1
MS.gene068456.t1 MTR_7g056633 41.584 101 59 0 175 275 32 132 3.99e-19 84.3
MS.gene068456.t1 MTR_7g094990 30.387 181 114 4 135 309 33 207 1.08e-17 85.9
MS.gene068456.t1 MTR_8g463880 40.000 115 64 2 147 258 35 147 2.73e-17 79.3
MS.gene068456.t1 MTR_4g117940 38.889 108 63 1 172 279 72 176 6.87e-16 76.3
MS.gene068456.t1 MTR_5g063300 37.113 97 60 1 176 271 51 147 1.72e-12 65.5
MS.gene068456.t1 MTR_1g024830 47.692 65 33 1 43 107 264 327 3.28e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068456.t1 AT5G41980 43.099 355 176 6 163 507 30 368 2.99e-93 289
MS.gene068456.t1 AT1G43722 32.692 312 194 7 121 421 13 319 4.13e-42 153
MS.gene068456.t1 AT5G28730 32.328 232 126 4 175 401 24 229 1.29e-31 124
MS.gene068456.t1 AT5G35695 45.926 135 61 1 323 457 25 147 6.08e-31 119
MS.gene068456.t1 AT5G28950 46.875 96 51 0 257 352 1 96 4.40e-24 98.6
MS.gene068456.t1 AT3G30525 33.750 160 99 3 285 439 1 158 2.14e-19 85.9

Find 111 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACGACTTCTTGAATAAA+TGG 0.143416 6.3:-64851636 MS.gene068456:CDS
CTAGCACTGTTGAGAATTTC+TGG 0.157165 6.3:+64852739 None:intergenic
AACAACTCCTTTGCATTTCT+TGG 0.218146 6.3:+64851967 None:intergenic
CTTCTGTATTTAAGTATTCT+TGG 0.218368 6.3:+64852055 None:intergenic
ACCCAGGAGATGTGGATTTA+TGG 0.249166 6.3:-64853064 MS.gene068456:CDS
GACTGGTTATTCAGTAGTTT+AGG 0.261552 6.3:-64851775 MS.gene068456:CDS
CACCGACTCACGGGTGTTAA+AGG 0.267503 6.3:-64852417 MS.gene068456:CDS
ATGAAAACCTCCCGGGCATT+AGG 0.298800 6.3:+64853539 None:intergenic
ATCATTCAGACCTTGAAATA+TGG 0.304552 6.3:+64852709 None:intergenic
AATGAGAATGCAACCTGTTC+TGG 0.328101 6.3:+64851685 None:intergenic
TGAACGTAATAGAGTGATTC+AGG 0.333897 6.3:-64852872 MS.gene068456:CDS
GATGATGAGGATGGTTCTTC+AGG 0.349700 6.3:-64853830 MS.gene068456:CDS
CTATTATTTCAGGATTGTAT+AGG 0.362544 6.3:-64852593 MS.gene068456:intron
ACTGGTTATTCAGTAGTTTA+GGG 0.364419 6.3:-64851774 MS.gene068456:CDS
GCAAATTCCTGCACATGTTC+CGG 0.367277 6.3:-64852555 MS.gene068456:CDS
AAGAGGGGCCGAAAAGCTTC+TGG 0.377408 6.3:-64853737 MS.gene068456:CDS
CAAAGGAGTTGTTCAATCAT+AGG 0.383328 6.3:-64851957 MS.gene068456:CDS
GAACTCGTTGCGGCTGCTGC+TGG 0.386586 6.3:-64853135 MS.gene068456:CDS
TGCCATAAATCCACATCTCC+TGG 0.393862 6.3:+64853062 None:intergenic
CAGCTAGTGGTGGTCGGAAG+AGG 0.397609 6.3:-64853754 MS.gene068456:CDS
GCGAAATCGAGATTGATCTT+TGG 0.398795 6.3:+64852532 None:intergenic
ACCAGTCATTTCTTTCTTCA+CGG 0.401217 6.3:+64851791 None:intergenic
ATTTGTGGGAAATTCTGATC+TGG 0.404418 6.3:+64852380 None:intergenic
CTGCATCATGGCATCCACTA+TGG 0.407457 6.3:+64853709 None:intergenic
TGAAAACCTCCCGGGCATTA+GGG 0.410829 6.3:+64853540 None:intergenic
TATTTCTTCAATACCAGAAC+AGG 0.414037 6.3:-64851698 MS.gene068456:CDS
TATCACGTAACATGGCTCTT+TGG 0.418711 6.3:+64852953 None:intergenic
TACCAACCTTATGAGTTTAG+AGG 0.421610 6.3:-64852003 MS.gene068456:CDS
TGACGACTTCTTGAATAAAT+GGG 0.432370 6.3:-64851635 MS.gene068456:CDS
TGAGGAGCAAGTTTCATGAT+TGG 0.432849 6.3:+64851877 None:intergenic
TCAGGAGCGGTTTCAGCACT+CGG 0.439358 6.3:-64852854 MS.gene068456:CDS
AACGAACCTTGAGGAATTTG+TGG 0.440004 6.3:+64852365 None:intergenic
TCAATACATTATTAAAATGC+CGG 0.441701 6.3:+64852818 None:intergenic
GAAGAAATAAATTGAACATC+GGG 0.447295 6.3:+64851712 None:intergenic
AGCTAGTGGTGGTCGGAAGA+GGG 0.455554 6.3:-64853753 MS.gene068456:CDS
GCCATGTTACGTGATACTTC+TGG 0.460394 6.3:-64852946 MS.gene068456:CDS
TCACTCTATTACGTTCACTA+TGG 0.463287 6.3:+64852878 None:intergenic
GGGTGATATTGACATGGAAT+TGG 0.463892 6.3:-64853166 MS.gene068456:CDS
TCTGGTGATGTTGTATCCTC+AGG 0.466979 6.3:+64852757 None:intergenic
GAGGAGCAAGTTTCATGATT+GGG 0.469428 6.3:+64851878 None:intergenic
TGAACATCGGGAAGTTCGTC+AGG 0.474711 6.3:+64851724 None:intergenic
CTCTTCCGACCACCACTAGC+TGG 0.483214 6.3:+64853755 None:intergenic
TCTTTGGCCGGAACATGTGC+AGG 0.489674 6.3:+64852548 None:intergenic
ATCTGAGAAATACTATCTTA+AGG 0.491213 6.3:-64851927 MS.gene068456:CDS
GAGGATGGTTCTTCAGGCTC+AGG 0.500473 6.3:-64853824 MS.gene068456:CDS
ACGAACCTTGAGGAATTTGT+GGG 0.504423 6.3:+64852366 None:intergenic
TTGAGAATCACCCTAATGCC+CGG 0.506051 6.3:-64853550 MS.gene068456:CDS
TGACATGGAATTGGATGAGA+TGG 0.507251 6.3:-64853157 MS.gene068456:CDS
GATGCAAGGTCTTGATGAAA+GGG 0.513593 6.3:-64853597 MS.gene068456:CDS
TTTGTGGGAAATTCTGATCT+GGG 0.513968 6.3:+64852381 None:intergenic
TTAGCACCTCTAAACTCATA+AGG 0.519230 6.3:+64851997 None:intergenic
TGGTACCGAACCCCTTGAAA+AGG 0.519547 6.3:+64852021 None:intergenic
TCTCGATTTCGCAATAAGAA+AGG 0.526197 6.3:-64852521 MS.gene068456:CDS
CACGTAACATGGCTCTTTGG+CGG 0.527673 6.3:+64852956 None:intergenic
ACTCCTTTGCATTTCTTGGT+AGG 0.527692 6.3:+64851971 None:intergenic
TACAGATACACCAATCAGCA+TGG 0.529586 6.3:-64853187 MS.gene068456:CDS
AGATGCAAGGTCTTGATGAA+AGG 0.540422 6.3:-64853598 MS.gene068456:CDS
AATTCTGATCTGGGTCATCA+AGG 0.542424 6.3:+64852390 None:intergenic
AAGGTTCTGTCACCGACTCA+CGG 0.543196 6.3:-64852427 MS.gene068456:CDS
AATCGAGATTGATCTTTGGC+CGG 0.545496 6.3:+64852536 None:intergenic
GATTGTATAGGAGTAATTGA+TGG 0.547687 6.3:-64852581 MS.gene068456:CDS
TCAATATCACCCATGCTGAT+TGG 0.548167 6.3:+64853177 None:intergenic
AGGTTCTGTCACCGACTCAC+GGG 0.562802 6.3:-64852426 MS.gene068456:CDS
CAAGCTAGTGTTCCAGCTAG+TGG 0.563625 6.3:-64853767 MS.gene068456:CDS
GGTTTATCACCCAGGAGATG+TGG 0.563874 6.3:-64853072 MS.gene068456:CDS
GCCATAAATCCACATCTCCT+GGG 0.566505 6.3:+64853063 None:intergenic
AGCAGCTGCTATCTGCATCA+TGG 0.570810 6.3:+64853697 None:intergenic
AGCTTCTGGTGATGCCATAG+TGG 0.573165 6.3:-64853723 MS.gene068456:CDS
CAAGAATACTTAAATACAGA+AGG 0.573953 6.3:-64852054 MS.gene068456:CDS
AATAGAGATGAAAACCTCCC+GGG 0.577351 6.3:+64853532 None:intergenic
TGAAGAAATAAATTGAACAT+CGG 0.577543 6.3:+64851711 None:intergenic
AAGCAAGTGCATCAATGTGT+TGG 0.578048 6.3:-64853624 MS.gene068456:CDS
CAGGAGCGGTTTCAGCACTC+GGG 0.579751 6.3:-64852853 MS.gene068456:CDS
GTGACAGAACCTTCCCAACC+AGG 0.582402 6.3:+64852437 None:intergenic
AAATGCAATTATGAAGAATG+AGG 0.583203 6.3:-64853660 MS.gene068456:CDS
CTTCCCGTGGTTTATCACCC+AGG 0.584887 6.3:-64853080 MS.gene068456:CDS
GCTAGTGGTGGTCGGAAGAG+GGG 0.585645 6.3:-64853752 MS.gene068456:CDS
ATGGCTTTCGATGATGAGGA+TGG 0.589950 6.3:-64853839 MS.gene068456:CDS
CAGCATGGGTGATATTGACA+TGG 0.591176 6.3:-64853172 MS.gene068456:CDS
TGAGAATCACCCTAATGCCC+GGG 0.591855 6.3:-64853549 MS.gene068456:CDS
CTGGTTATTCAGTAGTTTAG+GGG 0.592004 6.3:-64851773 MS.gene068456:CDS
CACCTCTAAACTCATAAGGT+TGG 0.594202 6.3:+64852001 None:intergenic
TTTATGGCAGAAGTGCTGAA+TGG 0.597101 6.3:-64853048 MS.gene068456:CDS
TGGTTATTCAGTAGTTTAGG+GGG 0.599818 6.3:-64851772 MS.gene068456:CDS
AATTTCCCACAAATTCCTCA+AGG 0.601774 6.3:-64852371 MS.gene068456:intron
ACAGATACACCAATCAGCAT+GGG 0.605365 6.3:-64853186 MS.gene068456:CDS
TGCCTTTAACACCCGTGAGT+CGG 0.605648 6.3:+64852415 None:intergenic
TTAAGTATTCTTGGTCAACA+AGG 0.607070 6.3:+64852064 None:intergenic
TTGTCGTGAAATGTTGCGGA+TGG 0.607611 6.3:-64853013 MS.gene068456:CDS
TCACCTACCAAGAAATGCAA+AGG 0.607831 6.3:-64851974 MS.gene068456:CDS
GTGTTCCAGCTAGTGGTGGT+CGG 0.615184 6.3:-64853760 MS.gene068456:CDS
ACTCGGGTGAAACTATTAGC+CGG 0.621199 6.3:-64852837 MS.gene068456:CDS
ATCTCCTGGGTGATAAACCA+CGG 0.624115 6.3:+64853076 None:intergenic
ACCAGAAGTATCACGTAACA+TGG 0.625814 6.3:+64852945 None:intergenic
GATGATGCGAACATGTTAGA+CGG 0.630185 6.3:-64853800 MS.gene068456:CDS
GGTGATGTTGTATCCTCAGG+AGG 0.631551 6.3:+64852760 None:intergenic
CTAACAAAACAGCCTTCCCG+TGG 0.634429 6.3:-64853093 MS.gene068456:CDS
GTTAATGGCTTTCGATGATG+AGG 0.645112 6.3:-64853843 None:intergenic
TCTCCTGGGTGATAAACCAC+GGG 0.646361 6.3:+64853077 None:intergenic
GCTAGTGTTCCAGCTAGTGG+TGG 0.652322 6.3:-64853764 MS.gene068456:CDS
CTGGGTGATAAACCACGGGA+AGG 0.661556 6.3:+64853081 None:intergenic
GGTTATTCAGTAGTTTAGGG+GGG 0.667813 6.3:-64851771 MS.gene068456:CDS
GGATGAGATGGAACTCGTTG+CGG 0.671380 6.3:-64853145 MS.gene068456:CDS
GTAATAGAGTGATTCAGGAG+CGG 0.681046 6.3:-64852867 MS.gene068456:CDS
TCTTGAATAAATGGGACGAG+TGG 0.681165 6.3:-64851627 MS.gene068456:CDS
CATGTATTTCAGAAGCTGTG+TGG 0.686088 6.3:-64852985 MS.gene068456:CDS
GCCGTGAAGAAAGAAATGAC+TGG 0.693527 6.3:-64851792 MS.gene068456:CDS
TGAGTCTGAAAAGAATACTG+AGG 0.711551 6.3:+64851859 None:intergenic
GAATCACCCTAATGCCCGGG+AGG 0.714237 6.3:-64853546 MS.gene068456:intron
AGTCATTTCTTTCTTCACGG+CGG 0.739854 6.3:+64851794 None:intergenic
AATGTGTTGGATGAGATGCA+AGG 0.778166 6.3:-64853611 MS.gene068456:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAAATTGATTAACA+TGG + chr6.3:64852140-64852159 None:intergenic 10.0%
!! AAATATAAATTGATTAACAT+GGG + chr6.3:64852139-64852158 None:intergenic 10.0%
!! AACTATTAATTTATTTCCTT+TGG - chr6.3:64853353-64853372 MS.gene068456:intron 15.0%
!! CTTAAAAGATCATACTAATA+TGG + chr6.3:64852796-64852815 None:intergenic 20.0%
!! GAAAAATGAATATAAACTGA+AGG + chr6.3:64853007-64853026 None:intergenic 20.0%
!! TCAATACATTATTAAAATGC+CGG + chr6.3:64852648-64852667 None:intergenic 20.0%
!! TGAAGAAATAAATTGAACAT+CGG + chr6.3:64853755-64853774 None:intergenic 20.0%
!!! TAGATTTTATCCATATTTCA+AGG - chr6.3:64852744-64852763 MS.gene068456:CDS 20.0%
! AAATGCAATTATGAAGAATG+AGG - chr6.3:64851803-64851822 MS.gene068456:CDS 25.0%
! ACAATCCTGAAATAATAGTA+GGG + chr6.3:64852868-64852887 None:intergenic 25.0%
! ATCTGAGAAATACTATCTTA+AGG - chr6.3:64853536-64853555 MS.gene068456:intron 25.0%
! CAAGAATACTTAAATACAGA+AGG - chr6.3:64853409-64853428 MS.gene068456:intron 25.0%
! CTATTATTTCAGGATTGTAT+AGG - chr6.3:64852870-64852889 MS.gene068456:CDS 25.0%
! CTTCTGTATTTAAGTATTCT+TGG + chr6.3:64853411-64853430 None:intergenic 25.0%
! GAAGAAATAAATTGAACATC+GGG + chr6.3:64853754-64853773 None:intergenic 25.0%
! TACAATCCTGAAATAATAGT+AGG + chr6.3:64852869-64852888 None:intergenic 25.0%
! TTCGTAACCAAAAACAAAAA+AGG + chr6.3:64852032-64852051 None:intergenic 25.0%
!! ATTTTCTCAAACGATTCAAA+TGG + chr6.3:64852006-64852025 None:intergenic 25.0%
!!! AAATCGTCCTTTTTTGTTTT+TGG - chr6.3:64852022-64852041 MS.gene068456:CDS 25.0%
!!! AGATTTGTTTTATGCATGAT+TGG - chr6.3:64852196-64852215 MS.gene068456:intron 25.0%
!!! CAGTTTATATTCATTTTTCC+TGG - chr6.3:64853008-64853027 MS.gene068456:CDS 25.0%
!!! TATATTCATTTTTCCTGGTT+GGG - chr6.3:64853013-64853032 MS.gene068456:CDS 25.0%
!!! TTATATTCATTTTTCCTGGT+TGG - chr6.3:64853012-64853031 MS.gene068456:CDS 25.0%
!!! TTTTTGTTTTTGGTTACGAA+TGG - chr6.3:64852032-64852051 MS.gene068456:CDS 25.0%
ACTGGTTATTCAGTAGTTTA+GGG - chr6.3:64853689-64853708 MS.gene068456:CDS 30.0%
AGCAAAAAGAGTGATAAACA+GGG + chr6.3:64852823-64852842 None:intergenic 30.0%
ATCATTCAGACCTTGAAATA+TGG + chr6.3:64852757-64852776 None:intergenic 30.0%
GATTGTATAGGAGTAATTGA+TGG - chr6.3:64852882-64852901 MS.gene068456:CDS 30.0%
TAGCAAAAAGAGTGATAAAC+AGG + chr6.3:64852824-64852843 None:intergenic 30.0%
TATTTCTTCAATACCAGAAC+AGG - chr6.3:64853765-64853784 MS.gene068456:CDS 30.0%
TGAAATAATAGTAGGGAGAT+GGG + chr6.3:64852861-64852880 None:intergenic 30.0%
TGACGACTTCTTGAATAAAT+GGG - chr6.3:64853828-64853847 MS.gene068456:CDS 30.0%
TTAAGTATTCTTGGTCAACA+AGG + chr6.3:64853402-64853421 None:intergenic 30.0%
TTCCTATGAAACAAATCCAA+AGG + chr6.3:64853372-64853391 None:intergenic 30.0%
TTGACGACTTCTTGAATAAA+TGG - chr6.3:64853827-64853846 MS.gene068456:CDS 30.0%
! CAAATCTAGTTTGAAAACAG+AGG + chr6.3:64852183-64852202 None:intergenic 30.0%
! GTTTTATGCATGATTGGAAT+TGG - chr6.3:64852202-64852221 MS.gene068456:intron 30.0%
! TTCCTTTGGATTTGTTTCAT+AGG - chr6.3:64853367-64853386 MS.gene068456:intron 30.0%
!! GCGATATTTTTAAACGTCAT+TGG - chr6.3:64852562-64852581 MS.gene068456:CDS 30.0%
!!! AAGGGTTTACTTTTTTGCTT+TGG - chr6.3:64851884-64851903 MS.gene068456:CDS 30.0%
AACAACTCCTTTGCATTTCT+TGG + chr6.3:64853499-64853518 None:intergenic 35.0%
AATTTCCCACAAATTCCTCA+AGG - chr6.3:64853092-64853111 MS.gene068456:CDS 35.0%
ACCAGTCATTTCTTTCTTCA+CGG + chr6.3:64853675-64853694 None:intergenic 35.0%
ATAAATGCTAACGAACCTTG+AGG + chr6.3:64853110-64853129 None:intergenic 35.0%
ATTTGTGGGAAATTCTGATC+TGG + chr6.3:64853086-64853105 None:intergenic 35.0%
CAAAGGAGTTGTTCAATCAT+AGG - chr6.3:64853506-64853525 MS.gene068456:intron 35.0%
CAGTCTCGTTAACTATACAA+AGG + chr6.3:64852065-64852084 None:intergenic 35.0%
CATCTCCCTACTATTATTTC+AGG - chr6.3:64852860-64852879 MS.gene068456:CDS 35.0%
CATGTGAGTTTGTGTTTCAT+AGG - chr6.3:64853307-64853326 MS.gene068456:intron 35.0%
CTATGAAACACAAACTCACA+TGG + chr6.3:64853309-64853328 None:intergenic 35.0%
CTGAAATAATAGTAGGGAGA+TGG + chr6.3:64852862-64852881 None:intergenic 35.0%
CTGGTTATTCAGTAGTTTAG+GGG - chr6.3:64853690-64853709 MS.gene068456:CDS 35.0%
TAATAGAGATGAAAACCTCC+CGG + chr6.3:64851935-64851954 None:intergenic 35.0%
TACCAACCTTATGAGTTTAG+AGG - chr6.3:64853460-64853479 MS.gene068456:intron 35.0%
TACTACACAGATAACTGACA+AGG + chr6.3:64853160-64853179 None:intergenic 35.0%
TATAGTTAACGAGACTGCAA+AGG - chr6.3:64852068-64852087 MS.gene068456:CDS 35.0%
TCACTCTATTACGTTCACTA+TGG + chr6.3:64852588-64852607 None:intergenic 35.0%
TCTCGATTTCGCAATAAGAA+AGG - chr6.3:64852942-64852961 MS.gene068456:CDS 35.0%
TGAACGTAATAGAGTGATTC+AGG - chr6.3:64852591-64852610 MS.gene068456:intron 35.0%
TGAGTCTGAAAAGAATACTG+AGG + chr6.3:64853607-64853626 None:intergenic 35.0%
TGGTTATTCAGTAGTTTAGG+GGG - chr6.3:64853691-64853710 MS.gene068456:CDS 35.0%
TTAGCACCTCTAAACTCATA+AGG + chr6.3:64853469-64853488 None:intergenic 35.0%
TTCTCAAACGATTCAAATGG+AGG + chr6.3:64852003-64852022 None:intergenic 35.0%
TTTGTGGGAAATTCTGATCT+GGG + chr6.3:64853085-64853104 None:intergenic 35.0%
! ACTTTTGTCGTGAAATGTTG+CGG - chr6.3:64852446-64852465 MS.gene068456:CDS 35.0%
! AGTATTCTTTTCAGACTCAG+CGG - chr6.3:64853608-64853627 MS.gene068456:CDS 35.0%
! GACTGGTTATTCAGTAGTTT+AGG - chr6.3:64853688-64853707 MS.gene068456:CDS 35.0%
! GATTTCTTGCTCCTTTTCAA+GGG - chr6.3:64853431-64853450 MS.gene068456:intron 35.0%
! GTTTGAAAACAGAGGTATGT+TGG + chr6.3:64852175-64852194 None:intergenic 35.0%
!! ATTTCTTGCTCCTTTTCAAG+GGG - chr6.3:64853432-64853451 MS.gene068456:intron 35.0%
AAAAGAATGCCATGGTTGCA+GGG - chr6.3:64851963-64851982 MS.gene068456:CDS 40.0%
AACGAACCTTGAGGAATTTG+TGG + chr6.3:64853101-64853120 None:intergenic 40.0%
AAGCAAGTGCATCAATGTGT+TGG - chr6.3:64851839-64851858 MS.gene068456:CDS 40.0%
AATAGAGATGAAAACCTCCC+GGG + chr6.3:64851934-64851953 None:intergenic 40.0%
AATCGAGATTGATCTTTGGC+CGG + chr6.3:64852930-64852949 None:intergenic 40.0%
AATGAGAATGCAACCTGTTC+TGG + chr6.3:64853781-64853800 None:intergenic 40.0%
AATGTGTTGGATGAGATGCA+AGG - chr6.3:64851852-64851871 MS.gene068456:CDS 40.0%
AATTCTGATCTGGGTCATCA+AGG + chr6.3:64853076-64853095 None:intergenic 40.0%
ACAGATACACCAATCAGCAT+GGG - chr6.3:64852277-64852296 MS.gene068456:intron 40.0%
ACGAACCTTGAGGAATTTGT+GGG + chr6.3:64853100-64853119 None:intergenic 40.0%
ACTCCTTTGCATTTCTTGGT+AGG + chr6.3:64853495-64853514 None:intergenic 40.0%
AGAGTGAGAAAAGAATGCCA+TGG - chr6.3:64851955-64851974 MS.gene068456:CDS 40.0%
AGATGCAAGGTCTTGATGAA+AGG - chr6.3:64851865-64851884 MS.gene068456:CDS 40.0%
AGCAGCTGCTTCAAAAATGA+GGG - chr6.3:64851779-64851798 MS.gene068456:CDS 40.0%
AGTCATTTCTTTCTTCACGG+CGG + chr6.3:64853672-64853691 None:intergenic 40.0%
CACCTCTAAACTCATAAGGT+TGG + chr6.3:64853465-64853484 None:intergenic 40.0%
CATGTATTTCAGAAGCTGTG+TGG - chr6.3:64852478-64852497 MS.gene068456:CDS 40.0%
CTAGCACTGTTGAGAATTTC+TGG + chr6.3:64852727-64852746 None:intergenic 40.0%
GAGGAGCAAGTTTCATGATT+GGG + chr6.3:64853588-64853607 None:intergenic 40.0%
GATGATGCGAACATGTTAGA+CGG - chr6.3:64851663-64851682 MS.gene068456:CDS 40.0%
GATGCAAGGTCTTGATGAAA+GGG - chr6.3:64851866-64851885 MS.gene068456:CDS 40.0%
GCGAAATCGAGATTGATCTT+TGG + chr6.3:64852934-64852953 None:intergenic 40.0%
GGGTGATATTGACATGGAAT+TGG - chr6.3:64852297-64852316 MS.gene068456:intron 40.0%
GGTTATTCAGTAGTTTAGGG+GGG - chr6.3:64853692-64853711 MS.gene068456:CDS 40.0%
GTAATAGAGTGATTCAGGAG+CGG - chr6.3:64852596-64852615 MS.gene068456:intron 40.0%
GTACAAACACGTTGGATCAA+AGG - chr6.3:64853177-64853196 MS.gene068456:CDS 40.0%
TACAGATACACCAATCAGCA+TGG - chr6.3:64852276-64852295 MS.gene068456:intron 40.0%
TAGCAGCTGCTTCAAAAATG+AGG - chr6.3:64851778-64851797 MS.gene068456:CDS 40.0%
TATCACGTAACATGGCTCTT+TGG + chr6.3:64852513-64852532 None:intergenic 40.0%
TCAATATCACCCATGCTGAT+TGG + chr6.3:64852289-64852308 None:intergenic 40.0%
TCACCTACCAAGAAATGCAA+AGG - chr6.3:64853489-64853508 MS.gene068456:intron 40.0%
TCTGTGTAGTACAAACACGT+TGG - chr6.3:64853169-64853188 MS.gene068456:CDS 40.0%
TCTTGAATAAATGGGACGAG+TGG - chr6.3:64853836-64853855 MS.gene068456:CDS 40.0%
TGACATGGAATTGGATGAGA+TGG - chr6.3:64852306-64852325 MS.gene068456:intron 40.0%
TGAGGAGCAAGTTTCATGAT+TGG + chr6.3:64853589-64853608 None:intergenic 40.0%
! CAAAATTTTCCCTGCAACCA+TGG + chr6.3:64851975-64851994 None:intergenic 40.0%
! GGATTTCTTGCTCCTTTTCA+AGG - chr6.3:64853430-64853449 MS.gene068456:intron 40.0%
! GTATTCTTTTCAGACTCAGC+GGG - chr6.3:64853609-64853628 MS.gene068456:CDS 40.0%
! TGAATTTTTGCAACCTCCTG+AGG - chr6.3:64852690-64852709 MS.gene068456:intron 40.0%
!! ACCAGAAGTATCACGTAACA+TGG + chr6.3:64852521-64852540 None:intergenic 40.0%
!! TTCATTTTTCCTGGTTGGGA+AGG - chr6.3:64853017-64853036 MS.gene068456:CDS 40.0%
!! TTTATGGCAGAAGTGCTGAA+TGG - chr6.3:64852415-64852434 MS.gene068456:CDS 40.0%
!!! CTGCAAGCACATTTTGAGAT+AGG + chr6.3:64852971-64852990 None:intergenic 40.0%
ACCCAGGAGATGTGGATTTA+TGG - chr6.3:64852399-64852418 MS.gene068456:CDS 45.0%
ACTCGGGTGAAACTATTAGC+CGG - chr6.3:64852626-64852645 MS.gene068456:intron 45.0%
ATCTCCTGGGTGATAAACCA+CGG + chr6.3:64852390-64852409 None:intergenic 45.0%
ATGGCTTTCGATGATGAGGA+TGG - chr6.3:64851624-64851643 MS.gene068456:CDS 45.0%
CAGCATGGGTGATATTGACA+TGG - chr6.3:64852291-64852310 MS.gene068456:intron 45.0%
GAAAAGAATGCCATGGTTGC+AGG - chr6.3:64851962-64851981 MS.gene068456:CDS 45.0%
GATGATGAGGATGGTTCTTC+AGG - chr6.3:64851633-64851652 MS.gene068456:CDS 45.0%
GCAAATTCCTGCACATGTTC+CGG - chr6.3:64852908-64852927 MS.gene068456:CDS 45.0%
GCCATAAATCCACATCTCCT+GGG + chr6.3:64852403-64852422 None:intergenic 45.0%
GCCATGTTACGTGATACTTC+TGG - chr6.3:64852517-64852536 MS.gene068456:CDS 45.0%
GCCGTGAAGAAAGAAATGAC+TGG - chr6.3:64853671-64853690 MS.gene068456:CDS 45.0%
TAGTTTAGGGGGGACATTTG+TGG - chr6.3:64853702-64853721 MS.gene068456:CDS 45.0%
TGCCATAAATCCACATCTCC+TGG + chr6.3:64852404-64852423 None:intergenic 45.0%
TTGAGAATCACCCTAATGCC+CGG - chr6.3:64851913-64851932 MS.gene068456:CDS 45.0%
TTGTCGTGAAATGTTGCGGA+TGG - chr6.3:64852450-64852469 MS.gene068456:CDS 45.0%
! TCTGGTGATGTTGTATCCTC+AGG + chr6.3:64852709-64852728 None:intergenic 45.0%
! TGGCATCACCAGAAGCTTTT+CGG + chr6.3:64851737-64851756 None:intergenic 45.0%
!! TTGCTCCTTTTCAAGGGGTT+CGG - chr6.3:64853437-64853456 MS.gene068456:intron 45.0%
AGCAGCTGCTATCTGCATCA+TGG + chr6.3:64851769-64851788 None:intergenic 50.0%
ATGAAAACCTCCCGGGCATT+AGG + chr6.3:64851927-64851946 None:intergenic 50.0%
CAAGCTAGTGTTCCAGCTAG+TGG - chr6.3:64851696-64851715 MS.gene068456:CDS 50.0%
CACGTAACATGGCTCTTTGG+CGG + chr6.3:64852510-64852529 None:intergenic 50.0%
CTAACAAAACAGCCTTCCCG+TGG - chr6.3:64852370-64852389 MS.gene068456:intron 50.0%
CTGCATCATGGCATCCACTA+TGG + chr6.3:64851757-64851776 None:intergenic 50.0%
GGATGAGATGGAACTCGTTG+CGG - chr6.3:64852318-64852337 MS.gene068456:intron 50.0%
GGTGATGTTGTATCCTCAGG+AGG + chr6.3:64852706-64852725 None:intergenic 50.0%
GGTTTATCACCCAGGAGATG+TGG - chr6.3:64852391-64852410 MS.gene068456:CDS 50.0%
TCTCCTGGGTGATAAACCAC+GGG + chr6.3:64852389-64852408 None:intergenic 50.0%
TGAAAACCTCCCGGGCATTA+GGG + chr6.3:64851926-64851945 None:intergenic 50.0%
TGAACATCGGGAAGTTCGTC+AGG + chr6.3:64853742-64853761 None:intergenic 50.0%
TGAGAATCACCCTAATGCCC+GGG - chr6.3:64851914-64851933 MS.gene068456:CDS 50.0%
TGCCTTTAACACCCGTGAGT+CGG + chr6.3:64853051-64853070 None:intergenic 50.0%
! AGCTTCTGGTGATGCCATAG+TGG - chr6.3:64851740-64851759 MS.gene068456:CDS 50.0%
! TGGTACCGAACCCCTTGAAA+AGG + chr6.3:64853445-64853464 None:intergenic 50.0%
!! AAGGTTCTGTCACCGACTCA+CGG - chr6.3:64853036-64853055 MS.gene068456:CDS 50.0%
AAGAGGGGCCGAAAAGCTTC+TGG - chr6.3:64851726-64851745 MS.gene068456:CDS 55.0%
AGCTAGTGGTGGTCGGAAGA+GGG - chr6.3:64851710-64851729 MS.gene068456:CDS 55.0%
CTGGGTGATAAACCACGGGA+AGG + chr6.3:64852385-64852404 None:intergenic 55.0%
CTTCCCGTGGTTTATCACCC+AGG - chr6.3:64852383-64852402 MS.gene068456:CDS 55.0%
GAGGATGGTTCTTCAGGCTC+AGG - chr6.3:64851639-64851658 MS.gene068456:CDS 55.0%
GCTAGTGTTCCAGCTAGTGG+TGG - chr6.3:64851699-64851718 MS.gene068456:CDS 55.0%
GTGACAGAACCTTCCCAACC+AGG + chr6.3:64853029-64853048 None:intergenic 55.0%
GTGTTCCAGCTAGTGGTGGT+CGG - chr6.3:64851703-64851722 MS.gene068456:CDS 55.0%
TCAGGAGCGGTTTCAGCACT+CGG - chr6.3:64852609-64852628 MS.gene068456:intron 55.0%
TCTTTGGCCGGAACATGTGC+AGG + chr6.3:64852918-64852937 None:intergenic 55.0%
! CGTTGGATCAAAGGCGTGTC+TGG - chr6.3:64853186-64853205 MS.gene068456:CDS 55.0%
!! AGGTTCTGTCACCGACTCAC+GGG - chr6.3:64853037-64853056 MS.gene068456:CDS 55.0%
!! CACCGACTCACGGGTGTTAA+AGG - chr6.3:64853046-64853065 MS.gene068456:CDS 55.0%
CAGCTAGTGGTGGTCGGAAG+AGG - chr6.3:64851709-64851728 MS.gene068456:CDS 60.0%
CAGGAGCGGTTTCAGCACTC+GGG - chr6.3:64852610-64852629 MS.gene068456:intron 60.0%
CTCTTCCGACCACCACTAGC+TGG + chr6.3:64851711-64851730 None:intergenic 60.0%
GAATCACCCTAATGCCCGGG+AGG - chr6.3:64851917-64851936 MS.gene068456:CDS 60.0%
GCTAGTGGTGGTCGGAAGAG+GGG - chr6.3:64851711-64851730 MS.gene068456:CDS 60.0%
!! CGTGTCAGTGTCGACCGTGT+CGG + chr6.3:64853215-64853234 None:intergenic 60.0%
GAACTCGTTGCGGCTGCTGC+TGG - chr6.3:64852328-64852347 MS.gene068456:intron 65.0%
! GGCGTGTCTGGCTTCCGACA+CGG - chr6.3:64853198-64853217 MS.gene068456:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 64851624 64853861 64851624 ID=MS.gene068456
chr6.3 mRNA 64851624 64853861 64851624 ID=MS.gene068456.t1;Parent=MS.gene068456
chr6.3 exon 64853547 64853861 64853547 ID=MS.gene068456.t1.exon1;Parent=MS.gene068456.t1
chr6.3 CDS 64853547 64853861 64853547 ID=cds.MS.gene068456.t1;Parent=MS.gene068456.t1
chr6.3 exon 64852720 64853241 64852720 ID=MS.gene068456.t1.exon2;Parent=MS.gene068456.t1
chr6.3 CDS 64852720 64853241 64852720 ID=cds.MS.gene068456.t1;Parent=MS.gene068456.t1
chr6.3 exon 64852372 64852603 64852372 ID=MS.gene068456.t1.exon3;Parent=MS.gene068456.t1
chr6.3 CDS 64852372 64852603 64852372 ID=cds.MS.gene068456.t1;Parent=MS.gene068456.t1
chr6.3 exon 64851624 64852096 64851624 ID=MS.gene068456.t1.exon4;Parent=MS.gene068456.t1
chr6.3 CDS 64851624 64852096 64851624 ID=cds.MS.gene068456.t1;Parent=MS.gene068456.t1
Gene Sequence

>MS.gene068456

ATGGCTTTCGATGATGAGGATGGTTCTTCAGGCTCAGGAGATGATGCGAACATGTTAGACGGACACAAGCGTCAAGCTAGTGTTCCAGCTAGTGGTGGTCGGAAGAGGGGCCGAAAAGCTTCTGGTGATGCCATAGTGGATGCCATGATGCAGATAGCAGCTGCTTCAAAAATGAGGGCAAATGCAATTATGAAGAATGAGGACAAATTTTCAATAAGCAAGTGCATCAATGTGTTGGATGAGATGCAAGGTCTTGATGAAAGGGTTTACTTTTTTGCTTTGGATTTGTTTGAGAATCACCCTAATGCCCGGGAGGTTTTCATCTCTATTAAGAGTGAGAAAAGAATGCCATGGTTGCAGGGAAAATTTTGTGTTTCCTCCATTTGAATCGTTTGAGAAAATCGTCCTTTTTTGTTTTTGGTTACGAATGGTCTCATACCTTTGTATAGTTAACGAGACTGCAAAGGAATGATGTTAGTTACTATATAACTAATTCGATTTTGTGCTCAAAGCCCATGTTAATCAATTTATATTTTGAATTTCTAATGCCAACATACCTCTGTTTTCAAACTAGATTTGTTTTATGCATGATTGGAATTGGAATGCTTTATATCAACTAGATATATCAGAAAGAAGTTTTGAAGTTTATTTTTACAGATACACCAATCAGCATGGGTGATATTGACATGGAATTGGATGAGATGGAACTCGTTGCGGCTGCTGCTGGATACTATTATTATAGCTCTCTAACAAAACAGCCTTCCCGTGGTTTATCACCCAGGAGATGTGGATTTATGGCAGAAGTGCTGAATGGACACGATGACTTTTGTCGTGAAATGTTGCGGATGGACAGACATGTATTTCAGAAGCTGTGTGGCATTTTCCGCCAAAGAGCCATGTTACGTGATACTTCTGGTGTAATGATAGAAGAGCAGTTAGCGATATTTTTAAACGTCATTGGCCATAGTGAACGTAATAGAGTGATTCAGGAGCGGTTTCAGCACTCGGGTGAAACTATTAGCCGGCATTTTAATAATGTATTGAAAGCTATTAAATCACTATCGCGTGAATTTTTGCAACCTCCTGAGGATACAACATCACCAGAAATTCTCAACAGTGCTAGATTTTATCCATATTTCAAGGTCTGAATGATCTTTTAGCTACTTCTTCCATATTAGTATGATCTTTTAAGTTTTCCCTGTTTATCACTCTTTTTGCTACTTTACTGACTTTTCCCATCTCCCTACTATTATTTCAGGATTGTATAGGAGTAATTGATGGTATGCAAATTCCTGCACATGTTCCGGCCAAAGATCAATCTCGATTTCGCAATAAGAAAGGCATCCTATCTCAAAATGTGCTTGCAGCTTGCACATTTGACCTTCAGTTTATATTCATTTTTCCTGGTTGGGAAGGTTCTGTCACCGACTCACGGGTGTTAAAGGCAGTCCTTGATGACCCAGATCAGAATTTCCCACAAATTCCTCAAGGTTCGTTAGCATTTATGACTGTGATCTTGATTTCATTATCTGTCCTTGTCAGTTATCTGTGTAGTACAAACACGTTGGATCAAAGGCGTGTCTGGCTTCCGACACGGTCGACACTGACACGTGTATTACATTCAATTAATTAATTTTCTCAAATCATTATCAATATTCACTTGTCAATGTCGTGTTCAGTGTCCATGTGAGTTTGTGTTTCATAGGTTGTTACGCATTGCATTAAAAATAACTATTAATTTATTTCCTTTGGATTTGTTTCATAGGAAAGTATTACCTTGTTGACCAAGAATACTTAAATACAGAAGGATTTCTTGCTCCTTTTCAAGGGGTTCGGTACCAACCTTATGAGTTTAGAGGTGCTAATCACCTACCAAGAAATGCAAAGGAGTTGTTCAATCATAGGCATTGCTATCTGAGAAATACTATCTTAAGGTCATTTAATGTGTTGAAAACTAGATTCCCAATCATGAAACTTGCTCCTCAGTATTCTTTTCAGACTCAGCGGGATATAGTCATAGCTGCATGTGTTTTGCATAATTTCATCCGCCGTGAAGAAAGAAATGACTGGTTATTCAGTAGTTTAGGGGGGACATTTGTGGATGAACAATCAGATCCTGACGAACTTCCCGATGTTCAATTTATTTCTTCAATACCAGAACAGGTTGCATTCTCATTACGTGAATCAGTTTCTGCATCTATGTTTGACGACTTCTTGAATAAATGGGACGAGTGGTGA

Protein sequence

>MS.gene068456.t1

MAFDDEDGSSGSGDDANMLDGHKRQASVPASGGRKRGRKASGDAIVDAMMQIAAASKMRANAIMKNEDKFSISKCINVLDEMQGLDERVYFFALDLFENHPNAREIYQKEVLKFIFTDTPISMGDIDMELDEMELVAAAAGYYYYSSLTKQPSRGLSPRRCGFMAEVLNGHDDFCREMLRMDRHVFQKLCGIFRQRAMLRDTSGVMIEEQLAIFLNVIGHSERNRVIQERFQHSGETISRHFNNVLKAIKSLSREFLQPPEDTTSPEILNSARFYPYFKDCIGVIDGMQIPAHVPAKDQSRFRNKKGILSQNVLAACTFDLQFIFIFPGWEGSVTDSRVLKAVLDDPDQNFPQIPQGKYYLVDQEYLNTEGFLAPFQGVRYQPYEFRGANHLPRNAKELFNHRHCYLRNTILRSFNVLKTRFPIMKLAPQYSFQTQRDIVIAACVLHNFIRREERNDWLFSSLGGTFVDEQSDPDELPDVQFISSIPEQVAFSLRESVSASMFDDFLNKWDEW