Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068456.t1 | XP_024642082.1 | 89.9 | 513 | 18 | 1 | 1 | 513 | 1 | 479 | 5.10E-254 | 886.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068456.t1 | Q17QR8 | 25.5 | 231 | 150 | 6 | 234 | 458 | 96 | 310 | 8.2e-11 | 70.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068456.t1 | A0A396HHR3 | 89.9 | 513 | 18 | 1 | 1 | 513 | 1 | 479 | 3.7e-254 | 886.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049435 | MS.gene068456 | 0.817429 | 3.31E-52 | -1.69E-46 |
MS.gene049666 | MS.gene068456 | 0.82201 | 2.98E-53 | -1.69E-46 |
MS.gene049824 | MS.gene068456 | 0.804821 | 1.80E-49 | -1.69E-46 |
MS.gene049825 | MS.gene068456 | 0.801797 | 7.60E-49 | -1.69E-46 |
MS.gene049850 | MS.gene068456 | 0.803559 | 3.29E-49 | -1.69E-46 |
MS.gene049873 | MS.gene068456 | 0.801461 | 8.91E-49 | -1.69E-46 |
MS.gene050442 | MS.gene068456 | 0.8046 | 2.00E-49 | -1.69E-46 |
MS.gene051247 | MS.gene068456 | 0.802035 | 6.79E-49 | -1.69E-46 |
MS.gene051265 | MS.gene068456 | 0.809297 | 2.03E-50 | -1.69E-46 |
MS.gene051594 | MS.gene068456 | 0.821827 | 3.28E-53 | -1.69E-46 |
MS.gene051719 | MS.gene068456 | 0.814345 | 1.61E-51 | -1.69E-46 |
MS.gene051720 | MS.gene068456 | 0.802098 | 6.59E-49 | -1.69E-46 |
MS.gene051744 | MS.gene068456 | 0.810479 | 1.13E-50 | -1.69E-46 |
MS.gene052020 | MS.gene068456 | 0.80116 | 1.03E-48 | -1.69E-46 |
MS.gene052190 | MS.gene068456 | 0.813684 | 2.26E-51 | -1.69E-46 |
MS.gene052582 | MS.gene068456 | 0.827505 | 1.51E-54 | -1.69E-46 |
MS.gene052584 | MS.gene068456 | 0.829714 | 4.41E-55 | -1.69E-46 |
MS.gene052867 | MS.gene068456 | 0.801183 | 1.02E-48 | -1.69E-46 |
MS.gene053054 | MS.gene068456 | -0.824557 | 7.57E-54 | -1.69E-46 |
MS.gene053226 | MS.gene068456 | 0.846296 | 2.37E-59 | -1.69E-46 |
MS.gene05365 | MS.gene068456 | 0.805715 | 1.17E-49 | -1.69E-46 |
MS.gene053966 | MS.gene068456 | 0.807196 | 5.69E-50 | -1.69E-46 |
MS.gene054291 | MS.gene068456 | -0.83428 | 3.28E-56 | -1.69E-46 |
MS.gene054775 | MS.gene068456 | 0.811192 | 7.92E-51 | -1.69E-46 |
MS.gene055166 | MS.gene068456 | 0.800542 | 1.37E-48 | -1.69E-46 |
MS.gene055357 | MS.gene068456 | 0.812805 | 3.52E-51 | -1.69E-46 |
MS.gene055778 | MS.gene068456 | 0.837393 | 5.34E-57 | -1.69E-46 |
MS.gene055818 | MS.gene068456 | 0.815282 | 1.00E-51 | -1.69E-46 |
MS.gene056050 | MS.gene068456 | 0.80132 | 9.52E-49 | -1.69E-46 |
MS.gene056173 | MS.gene068456 | 0.800739 | 1.25E-48 | -1.69E-46 |
MS.gene056174 | MS.gene068456 | 0.804101 | 2.54E-49 | -1.69E-46 |
MS.gene056366 | MS.gene068456 | 0.819706 | 1.01E-52 | -1.69E-46 |
MS.gene057060 | MS.gene068456 | 0.83543 | 1.69E-56 | -1.69E-46 |
MS.gene057314 | MS.gene068456 | 0.846981 | 1.54E-59 | -1.69E-46 |
MS.gene057414 | MS.gene068456 | 0.801117 | 1.05E-48 | -1.69E-46 |
MS.gene057915 | MS.gene068456 | 0.824234 | 9.01E-54 | -1.69E-46 |
MS.gene058625 | MS.gene068456 | 0.811008 | 8.68E-51 | -1.69E-46 |
MS.gene058829 | MS.gene068456 | 0.818894 | 1.54E-52 | -1.69E-46 |
MS.gene059084 | MS.gene068456 | 0.808799 | 2.59E-50 | -1.69E-46 |
MS.gene05954 | MS.gene068456 | 0.816168 | 6.36E-52 | -1.69E-46 |
MS.gene059584 | MS.gene068456 | 0.808156 | 3.56E-50 | -1.69E-46 |
MS.gene060429 | MS.gene068456 | 0.805101 | 1.57E-49 | -1.69E-46 |
MS.gene060521 | MS.gene068456 | 0.812122 | 4.97E-51 | -1.69E-46 |
MS.gene060553 | MS.gene068456 | 0.820772 | 5.75E-53 | -1.69E-46 |
MS.gene060634 | MS.gene068456 | -0.81871 | 1.70E-52 | -1.69E-46 |
MS.gene060781 | MS.gene068456 | 0.804029 | 2.63E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068456.t1 | MTR_1g077100 | 71.818 | 110 | 26 | 2 | 1 | 107 | 1 | 108 | 1.10e-45 | 156 |
MS.gene068456.t1 | MTR_4g055725 | 36.032 | 247 | 138 | 4 | 135 | 380 | 38 | 265 | 1.38e-43 | 155 |
MS.gene068456.t1 | MTR_4g117120 | 35.928 | 167 | 103 | 3 | 143 | 309 | 122 | 284 | 1.90e-24 | 105 |
MS.gene068456.t1 | MTR_5g022570 | 54.118 | 85 | 36 | 2 | 25 | 107 | 193 | 276 | 9.48e-20 | 90.1 |
MS.gene068456.t1 | MTR_7g056633 | 41.584 | 101 | 59 | 0 | 175 | 275 | 32 | 132 | 3.99e-19 | 84.3 |
MS.gene068456.t1 | MTR_7g094990 | 30.387 | 181 | 114 | 4 | 135 | 309 | 33 | 207 | 1.08e-17 | 85.9 |
MS.gene068456.t1 | MTR_8g463880 | 40.000 | 115 | 64 | 2 | 147 | 258 | 35 | 147 | 2.73e-17 | 79.3 |
MS.gene068456.t1 | MTR_4g117940 | 38.889 | 108 | 63 | 1 | 172 | 279 | 72 | 176 | 6.87e-16 | 76.3 |
MS.gene068456.t1 | MTR_5g063300 | 37.113 | 97 | 60 | 1 | 176 | 271 | 51 | 147 | 1.72e-12 | 65.5 |
MS.gene068456.t1 | MTR_1g024830 | 47.692 | 65 | 33 | 1 | 43 | 107 | 264 | 327 | 3.28e-12 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068456.t1 | AT5G41980 | 43.099 | 355 | 176 | 6 | 163 | 507 | 30 | 368 | 2.99e-93 | 289 |
MS.gene068456.t1 | AT1G43722 | 32.692 | 312 | 194 | 7 | 121 | 421 | 13 | 319 | 4.13e-42 | 153 |
MS.gene068456.t1 | AT5G28730 | 32.328 | 232 | 126 | 4 | 175 | 401 | 24 | 229 | 1.29e-31 | 124 |
MS.gene068456.t1 | AT5G35695 | 45.926 | 135 | 61 | 1 | 323 | 457 | 25 | 147 | 6.08e-31 | 119 |
MS.gene068456.t1 | AT5G28950 | 46.875 | 96 | 51 | 0 | 257 | 352 | 1 | 96 | 4.40e-24 | 98.6 |
MS.gene068456.t1 | AT3G30525 | 33.750 | 160 | 99 | 3 | 285 | 439 | 1 | 158 | 2.14e-19 | 85.9 |
Find 111 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGACGACTTCTTGAATAAA+TGG | 0.143416 | 6.3:-64851636 | MS.gene068456:CDS |
CTAGCACTGTTGAGAATTTC+TGG | 0.157165 | 6.3:+64852739 | None:intergenic |
AACAACTCCTTTGCATTTCT+TGG | 0.218146 | 6.3:+64851967 | None:intergenic |
CTTCTGTATTTAAGTATTCT+TGG | 0.218368 | 6.3:+64852055 | None:intergenic |
ACCCAGGAGATGTGGATTTA+TGG | 0.249166 | 6.3:-64853064 | MS.gene068456:CDS |
GACTGGTTATTCAGTAGTTT+AGG | 0.261552 | 6.3:-64851775 | MS.gene068456:CDS |
CACCGACTCACGGGTGTTAA+AGG | 0.267503 | 6.3:-64852417 | MS.gene068456:CDS |
ATGAAAACCTCCCGGGCATT+AGG | 0.298800 | 6.3:+64853539 | None:intergenic |
ATCATTCAGACCTTGAAATA+TGG | 0.304552 | 6.3:+64852709 | None:intergenic |
AATGAGAATGCAACCTGTTC+TGG | 0.328101 | 6.3:+64851685 | None:intergenic |
TGAACGTAATAGAGTGATTC+AGG | 0.333897 | 6.3:-64852872 | MS.gene068456:CDS |
GATGATGAGGATGGTTCTTC+AGG | 0.349700 | 6.3:-64853830 | MS.gene068456:CDS |
CTATTATTTCAGGATTGTAT+AGG | 0.362544 | 6.3:-64852593 | MS.gene068456:intron |
ACTGGTTATTCAGTAGTTTA+GGG | 0.364419 | 6.3:-64851774 | MS.gene068456:CDS |
GCAAATTCCTGCACATGTTC+CGG | 0.367277 | 6.3:-64852555 | MS.gene068456:CDS |
AAGAGGGGCCGAAAAGCTTC+TGG | 0.377408 | 6.3:-64853737 | MS.gene068456:CDS |
CAAAGGAGTTGTTCAATCAT+AGG | 0.383328 | 6.3:-64851957 | MS.gene068456:CDS |
GAACTCGTTGCGGCTGCTGC+TGG | 0.386586 | 6.3:-64853135 | MS.gene068456:CDS |
TGCCATAAATCCACATCTCC+TGG | 0.393862 | 6.3:+64853062 | None:intergenic |
CAGCTAGTGGTGGTCGGAAG+AGG | 0.397609 | 6.3:-64853754 | MS.gene068456:CDS |
GCGAAATCGAGATTGATCTT+TGG | 0.398795 | 6.3:+64852532 | None:intergenic |
ACCAGTCATTTCTTTCTTCA+CGG | 0.401217 | 6.3:+64851791 | None:intergenic |
ATTTGTGGGAAATTCTGATC+TGG | 0.404418 | 6.3:+64852380 | None:intergenic |
CTGCATCATGGCATCCACTA+TGG | 0.407457 | 6.3:+64853709 | None:intergenic |
TGAAAACCTCCCGGGCATTA+GGG | 0.410829 | 6.3:+64853540 | None:intergenic |
TATTTCTTCAATACCAGAAC+AGG | 0.414037 | 6.3:-64851698 | MS.gene068456:CDS |
TATCACGTAACATGGCTCTT+TGG | 0.418711 | 6.3:+64852953 | None:intergenic |
TACCAACCTTATGAGTTTAG+AGG | 0.421610 | 6.3:-64852003 | MS.gene068456:CDS |
TGACGACTTCTTGAATAAAT+GGG | 0.432370 | 6.3:-64851635 | MS.gene068456:CDS |
TGAGGAGCAAGTTTCATGAT+TGG | 0.432849 | 6.3:+64851877 | None:intergenic |
TCAGGAGCGGTTTCAGCACT+CGG | 0.439358 | 6.3:-64852854 | MS.gene068456:CDS |
AACGAACCTTGAGGAATTTG+TGG | 0.440004 | 6.3:+64852365 | None:intergenic |
TCAATACATTATTAAAATGC+CGG | 0.441701 | 6.3:+64852818 | None:intergenic |
GAAGAAATAAATTGAACATC+GGG | 0.447295 | 6.3:+64851712 | None:intergenic |
AGCTAGTGGTGGTCGGAAGA+GGG | 0.455554 | 6.3:-64853753 | MS.gene068456:CDS |
GCCATGTTACGTGATACTTC+TGG | 0.460394 | 6.3:-64852946 | MS.gene068456:CDS |
TCACTCTATTACGTTCACTA+TGG | 0.463287 | 6.3:+64852878 | None:intergenic |
GGGTGATATTGACATGGAAT+TGG | 0.463892 | 6.3:-64853166 | MS.gene068456:CDS |
TCTGGTGATGTTGTATCCTC+AGG | 0.466979 | 6.3:+64852757 | None:intergenic |
GAGGAGCAAGTTTCATGATT+GGG | 0.469428 | 6.3:+64851878 | None:intergenic |
TGAACATCGGGAAGTTCGTC+AGG | 0.474711 | 6.3:+64851724 | None:intergenic |
CTCTTCCGACCACCACTAGC+TGG | 0.483214 | 6.3:+64853755 | None:intergenic |
TCTTTGGCCGGAACATGTGC+AGG | 0.489674 | 6.3:+64852548 | None:intergenic |
ATCTGAGAAATACTATCTTA+AGG | 0.491213 | 6.3:-64851927 | MS.gene068456:CDS |
GAGGATGGTTCTTCAGGCTC+AGG | 0.500473 | 6.3:-64853824 | MS.gene068456:CDS |
ACGAACCTTGAGGAATTTGT+GGG | 0.504423 | 6.3:+64852366 | None:intergenic |
TTGAGAATCACCCTAATGCC+CGG | 0.506051 | 6.3:-64853550 | MS.gene068456:CDS |
TGACATGGAATTGGATGAGA+TGG | 0.507251 | 6.3:-64853157 | MS.gene068456:CDS |
GATGCAAGGTCTTGATGAAA+GGG | 0.513593 | 6.3:-64853597 | MS.gene068456:CDS |
TTTGTGGGAAATTCTGATCT+GGG | 0.513968 | 6.3:+64852381 | None:intergenic |
TTAGCACCTCTAAACTCATA+AGG | 0.519230 | 6.3:+64851997 | None:intergenic |
TGGTACCGAACCCCTTGAAA+AGG | 0.519547 | 6.3:+64852021 | None:intergenic |
TCTCGATTTCGCAATAAGAA+AGG | 0.526197 | 6.3:-64852521 | MS.gene068456:CDS |
CACGTAACATGGCTCTTTGG+CGG | 0.527673 | 6.3:+64852956 | None:intergenic |
ACTCCTTTGCATTTCTTGGT+AGG | 0.527692 | 6.3:+64851971 | None:intergenic |
TACAGATACACCAATCAGCA+TGG | 0.529586 | 6.3:-64853187 | MS.gene068456:CDS |
AGATGCAAGGTCTTGATGAA+AGG | 0.540422 | 6.3:-64853598 | MS.gene068456:CDS |
AATTCTGATCTGGGTCATCA+AGG | 0.542424 | 6.3:+64852390 | None:intergenic |
AAGGTTCTGTCACCGACTCA+CGG | 0.543196 | 6.3:-64852427 | MS.gene068456:CDS |
AATCGAGATTGATCTTTGGC+CGG | 0.545496 | 6.3:+64852536 | None:intergenic |
GATTGTATAGGAGTAATTGA+TGG | 0.547687 | 6.3:-64852581 | MS.gene068456:CDS |
TCAATATCACCCATGCTGAT+TGG | 0.548167 | 6.3:+64853177 | None:intergenic |
AGGTTCTGTCACCGACTCAC+GGG | 0.562802 | 6.3:-64852426 | MS.gene068456:CDS |
CAAGCTAGTGTTCCAGCTAG+TGG | 0.563625 | 6.3:-64853767 | MS.gene068456:CDS |
GGTTTATCACCCAGGAGATG+TGG | 0.563874 | 6.3:-64853072 | MS.gene068456:CDS |
GCCATAAATCCACATCTCCT+GGG | 0.566505 | 6.3:+64853063 | None:intergenic |
AGCAGCTGCTATCTGCATCA+TGG | 0.570810 | 6.3:+64853697 | None:intergenic |
AGCTTCTGGTGATGCCATAG+TGG | 0.573165 | 6.3:-64853723 | MS.gene068456:CDS |
CAAGAATACTTAAATACAGA+AGG | 0.573953 | 6.3:-64852054 | MS.gene068456:CDS |
AATAGAGATGAAAACCTCCC+GGG | 0.577351 | 6.3:+64853532 | None:intergenic |
TGAAGAAATAAATTGAACAT+CGG | 0.577543 | 6.3:+64851711 | None:intergenic |
AAGCAAGTGCATCAATGTGT+TGG | 0.578048 | 6.3:-64853624 | MS.gene068456:CDS |
CAGGAGCGGTTTCAGCACTC+GGG | 0.579751 | 6.3:-64852853 | MS.gene068456:CDS |
GTGACAGAACCTTCCCAACC+AGG | 0.582402 | 6.3:+64852437 | None:intergenic |
AAATGCAATTATGAAGAATG+AGG | 0.583203 | 6.3:-64853660 | MS.gene068456:CDS |
CTTCCCGTGGTTTATCACCC+AGG | 0.584887 | 6.3:-64853080 | MS.gene068456:CDS |
GCTAGTGGTGGTCGGAAGAG+GGG | 0.585645 | 6.3:-64853752 | MS.gene068456:CDS |
ATGGCTTTCGATGATGAGGA+TGG | 0.589950 | 6.3:-64853839 | MS.gene068456:CDS |
CAGCATGGGTGATATTGACA+TGG | 0.591176 | 6.3:-64853172 | MS.gene068456:CDS |
TGAGAATCACCCTAATGCCC+GGG | 0.591855 | 6.3:-64853549 | MS.gene068456:CDS |
CTGGTTATTCAGTAGTTTAG+GGG | 0.592004 | 6.3:-64851773 | MS.gene068456:CDS |
CACCTCTAAACTCATAAGGT+TGG | 0.594202 | 6.3:+64852001 | None:intergenic |
TTTATGGCAGAAGTGCTGAA+TGG | 0.597101 | 6.3:-64853048 | MS.gene068456:CDS |
TGGTTATTCAGTAGTTTAGG+GGG | 0.599818 | 6.3:-64851772 | MS.gene068456:CDS |
AATTTCCCACAAATTCCTCA+AGG | 0.601774 | 6.3:-64852371 | MS.gene068456:intron |
ACAGATACACCAATCAGCAT+GGG | 0.605365 | 6.3:-64853186 | MS.gene068456:CDS |
TGCCTTTAACACCCGTGAGT+CGG | 0.605648 | 6.3:+64852415 | None:intergenic |
TTAAGTATTCTTGGTCAACA+AGG | 0.607070 | 6.3:+64852064 | None:intergenic |
TTGTCGTGAAATGTTGCGGA+TGG | 0.607611 | 6.3:-64853013 | MS.gene068456:CDS |
TCACCTACCAAGAAATGCAA+AGG | 0.607831 | 6.3:-64851974 | MS.gene068456:CDS |
GTGTTCCAGCTAGTGGTGGT+CGG | 0.615184 | 6.3:-64853760 | MS.gene068456:CDS |
ACTCGGGTGAAACTATTAGC+CGG | 0.621199 | 6.3:-64852837 | MS.gene068456:CDS |
ATCTCCTGGGTGATAAACCA+CGG | 0.624115 | 6.3:+64853076 | None:intergenic |
ACCAGAAGTATCACGTAACA+TGG | 0.625814 | 6.3:+64852945 | None:intergenic |
GATGATGCGAACATGTTAGA+CGG | 0.630185 | 6.3:-64853800 | MS.gene068456:CDS |
GGTGATGTTGTATCCTCAGG+AGG | 0.631551 | 6.3:+64852760 | None:intergenic |
CTAACAAAACAGCCTTCCCG+TGG | 0.634429 | 6.3:-64853093 | MS.gene068456:CDS |
GTTAATGGCTTTCGATGATG+AGG | 0.645112 | 6.3:-64853843 | None:intergenic |
TCTCCTGGGTGATAAACCAC+GGG | 0.646361 | 6.3:+64853077 | None:intergenic |
GCTAGTGTTCCAGCTAGTGG+TGG | 0.652322 | 6.3:-64853764 | MS.gene068456:CDS |
CTGGGTGATAAACCACGGGA+AGG | 0.661556 | 6.3:+64853081 | None:intergenic |
GGTTATTCAGTAGTTTAGGG+GGG | 0.667813 | 6.3:-64851771 | MS.gene068456:CDS |
GGATGAGATGGAACTCGTTG+CGG | 0.671380 | 6.3:-64853145 | MS.gene068456:CDS |
GTAATAGAGTGATTCAGGAG+CGG | 0.681046 | 6.3:-64852867 | MS.gene068456:CDS |
TCTTGAATAAATGGGACGAG+TGG | 0.681165 | 6.3:-64851627 | MS.gene068456:CDS |
CATGTATTTCAGAAGCTGTG+TGG | 0.686088 | 6.3:-64852985 | MS.gene068456:CDS |
GCCGTGAAGAAAGAAATGAC+TGG | 0.693527 | 6.3:-64851792 | MS.gene068456:CDS |
TGAGTCTGAAAAGAATACTG+AGG | 0.711551 | 6.3:+64851859 | None:intergenic |
GAATCACCCTAATGCCCGGG+AGG | 0.714237 | 6.3:-64853546 | MS.gene068456:intron |
AGTCATTTCTTTCTTCACGG+CGG | 0.739854 | 6.3:+64851794 | None:intergenic |
AATGTGTTGGATGAGATGCA+AGG | 0.778166 | 6.3:-64853611 | MS.gene068456:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATATAAATTGATTAACA+TGG | + | chr6.3:64852140-64852159 | None:intergenic | 10.0% |
!! | AAATATAAATTGATTAACAT+GGG | + | chr6.3:64852139-64852158 | None:intergenic | 10.0% |
!! | AACTATTAATTTATTTCCTT+TGG | - | chr6.3:64853353-64853372 | MS.gene068456:intron | 15.0% |
!! | CTTAAAAGATCATACTAATA+TGG | + | chr6.3:64852796-64852815 | None:intergenic | 20.0% |
!! | GAAAAATGAATATAAACTGA+AGG | + | chr6.3:64853007-64853026 | None:intergenic | 20.0% |
!! | TCAATACATTATTAAAATGC+CGG | + | chr6.3:64852648-64852667 | None:intergenic | 20.0% |
!! | TGAAGAAATAAATTGAACAT+CGG | + | chr6.3:64853755-64853774 | None:intergenic | 20.0% |
!!! | TAGATTTTATCCATATTTCA+AGG | - | chr6.3:64852744-64852763 | MS.gene068456:CDS | 20.0% |
! | AAATGCAATTATGAAGAATG+AGG | - | chr6.3:64851803-64851822 | MS.gene068456:CDS | 25.0% |
! | ACAATCCTGAAATAATAGTA+GGG | + | chr6.3:64852868-64852887 | None:intergenic | 25.0% |
! | ATCTGAGAAATACTATCTTA+AGG | - | chr6.3:64853536-64853555 | MS.gene068456:intron | 25.0% |
! | CAAGAATACTTAAATACAGA+AGG | - | chr6.3:64853409-64853428 | MS.gene068456:intron | 25.0% |
! | CTATTATTTCAGGATTGTAT+AGG | - | chr6.3:64852870-64852889 | MS.gene068456:CDS | 25.0% |
! | CTTCTGTATTTAAGTATTCT+TGG | + | chr6.3:64853411-64853430 | None:intergenic | 25.0% |
! | GAAGAAATAAATTGAACATC+GGG | + | chr6.3:64853754-64853773 | None:intergenic | 25.0% |
! | TACAATCCTGAAATAATAGT+AGG | + | chr6.3:64852869-64852888 | None:intergenic | 25.0% |
! | TTCGTAACCAAAAACAAAAA+AGG | + | chr6.3:64852032-64852051 | None:intergenic | 25.0% |
!! | ATTTTCTCAAACGATTCAAA+TGG | + | chr6.3:64852006-64852025 | None:intergenic | 25.0% |
!!! | AAATCGTCCTTTTTTGTTTT+TGG | - | chr6.3:64852022-64852041 | MS.gene068456:CDS | 25.0% |
!!! | AGATTTGTTTTATGCATGAT+TGG | - | chr6.3:64852196-64852215 | MS.gene068456:intron | 25.0% |
!!! | CAGTTTATATTCATTTTTCC+TGG | - | chr6.3:64853008-64853027 | MS.gene068456:CDS | 25.0% |
!!! | TATATTCATTTTTCCTGGTT+GGG | - | chr6.3:64853013-64853032 | MS.gene068456:CDS | 25.0% |
!!! | TTATATTCATTTTTCCTGGT+TGG | - | chr6.3:64853012-64853031 | MS.gene068456:CDS | 25.0% |
!!! | TTTTTGTTTTTGGTTACGAA+TGG | - | chr6.3:64852032-64852051 | MS.gene068456:CDS | 25.0% |
ACTGGTTATTCAGTAGTTTA+GGG | - | chr6.3:64853689-64853708 | MS.gene068456:CDS | 30.0% | |
AGCAAAAAGAGTGATAAACA+GGG | + | chr6.3:64852823-64852842 | None:intergenic | 30.0% | |
ATCATTCAGACCTTGAAATA+TGG | + | chr6.3:64852757-64852776 | None:intergenic | 30.0% | |
GATTGTATAGGAGTAATTGA+TGG | - | chr6.3:64852882-64852901 | MS.gene068456:CDS | 30.0% | |
TAGCAAAAAGAGTGATAAAC+AGG | + | chr6.3:64852824-64852843 | None:intergenic | 30.0% | |
TATTTCTTCAATACCAGAAC+AGG | - | chr6.3:64853765-64853784 | MS.gene068456:CDS | 30.0% | |
TGAAATAATAGTAGGGAGAT+GGG | + | chr6.3:64852861-64852880 | None:intergenic | 30.0% | |
TGACGACTTCTTGAATAAAT+GGG | - | chr6.3:64853828-64853847 | MS.gene068456:CDS | 30.0% | |
TTAAGTATTCTTGGTCAACA+AGG | + | chr6.3:64853402-64853421 | None:intergenic | 30.0% | |
TTCCTATGAAACAAATCCAA+AGG | + | chr6.3:64853372-64853391 | None:intergenic | 30.0% | |
TTGACGACTTCTTGAATAAA+TGG | - | chr6.3:64853827-64853846 | MS.gene068456:CDS | 30.0% | |
! | CAAATCTAGTTTGAAAACAG+AGG | + | chr6.3:64852183-64852202 | None:intergenic | 30.0% |
! | GTTTTATGCATGATTGGAAT+TGG | - | chr6.3:64852202-64852221 | MS.gene068456:intron | 30.0% |
! | TTCCTTTGGATTTGTTTCAT+AGG | - | chr6.3:64853367-64853386 | MS.gene068456:intron | 30.0% |
!! | GCGATATTTTTAAACGTCAT+TGG | - | chr6.3:64852562-64852581 | MS.gene068456:CDS | 30.0% |
!!! | AAGGGTTTACTTTTTTGCTT+TGG | - | chr6.3:64851884-64851903 | MS.gene068456:CDS | 30.0% |
AACAACTCCTTTGCATTTCT+TGG | + | chr6.3:64853499-64853518 | None:intergenic | 35.0% | |
AATTTCCCACAAATTCCTCA+AGG | - | chr6.3:64853092-64853111 | MS.gene068456:CDS | 35.0% | |
ACCAGTCATTTCTTTCTTCA+CGG | + | chr6.3:64853675-64853694 | None:intergenic | 35.0% | |
ATAAATGCTAACGAACCTTG+AGG | + | chr6.3:64853110-64853129 | None:intergenic | 35.0% | |
ATTTGTGGGAAATTCTGATC+TGG | + | chr6.3:64853086-64853105 | None:intergenic | 35.0% | |
CAAAGGAGTTGTTCAATCAT+AGG | - | chr6.3:64853506-64853525 | MS.gene068456:intron | 35.0% | |
CAGTCTCGTTAACTATACAA+AGG | + | chr6.3:64852065-64852084 | None:intergenic | 35.0% | |
CATCTCCCTACTATTATTTC+AGG | - | chr6.3:64852860-64852879 | MS.gene068456:CDS | 35.0% | |
CATGTGAGTTTGTGTTTCAT+AGG | - | chr6.3:64853307-64853326 | MS.gene068456:intron | 35.0% | |
CTATGAAACACAAACTCACA+TGG | + | chr6.3:64853309-64853328 | None:intergenic | 35.0% | |
CTGAAATAATAGTAGGGAGA+TGG | + | chr6.3:64852862-64852881 | None:intergenic | 35.0% | |
CTGGTTATTCAGTAGTTTAG+GGG | - | chr6.3:64853690-64853709 | MS.gene068456:CDS | 35.0% | |
TAATAGAGATGAAAACCTCC+CGG | + | chr6.3:64851935-64851954 | None:intergenic | 35.0% | |
TACCAACCTTATGAGTTTAG+AGG | - | chr6.3:64853460-64853479 | MS.gene068456:intron | 35.0% | |
TACTACACAGATAACTGACA+AGG | + | chr6.3:64853160-64853179 | None:intergenic | 35.0% | |
TATAGTTAACGAGACTGCAA+AGG | - | chr6.3:64852068-64852087 | MS.gene068456:CDS | 35.0% | |
TCACTCTATTACGTTCACTA+TGG | + | chr6.3:64852588-64852607 | None:intergenic | 35.0% | |
TCTCGATTTCGCAATAAGAA+AGG | - | chr6.3:64852942-64852961 | MS.gene068456:CDS | 35.0% | |
TGAACGTAATAGAGTGATTC+AGG | - | chr6.3:64852591-64852610 | MS.gene068456:intron | 35.0% | |
TGAGTCTGAAAAGAATACTG+AGG | + | chr6.3:64853607-64853626 | None:intergenic | 35.0% | |
TGGTTATTCAGTAGTTTAGG+GGG | - | chr6.3:64853691-64853710 | MS.gene068456:CDS | 35.0% | |
TTAGCACCTCTAAACTCATA+AGG | + | chr6.3:64853469-64853488 | None:intergenic | 35.0% | |
TTCTCAAACGATTCAAATGG+AGG | + | chr6.3:64852003-64852022 | None:intergenic | 35.0% | |
TTTGTGGGAAATTCTGATCT+GGG | + | chr6.3:64853085-64853104 | None:intergenic | 35.0% | |
! | ACTTTTGTCGTGAAATGTTG+CGG | - | chr6.3:64852446-64852465 | MS.gene068456:CDS | 35.0% |
! | AGTATTCTTTTCAGACTCAG+CGG | - | chr6.3:64853608-64853627 | MS.gene068456:CDS | 35.0% |
! | GACTGGTTATTCAGTAGTTT+AGG | - | chr6.3:64853688-64853707 | MS.gene068456:CDS | 35.0% |
! | GATTTCTTGCTCCTTTTCAA+GGG | - | chr6.3:64853431-64853450 | MS.gene068456:intron | 35.0% |
! | GTTTGAAAACAGAGGTATGT+TGG | + | chr6.3:64852175-64852194 | None:intergenic | 35.0% |
!! | ATTTCTTGCTCCTTTTCAAG+GGG | - | chr6.3:64853432-64853451 | MS.gene068456:intron | 35.0% |
AAAAGAATGCCATGGTTGCA+GGG | - | chr6.3:64851963-64851982 | MS.gene068456:CDS | 40.0% | |
AACGAACCTTGAGGAATTTG+TGG | + | chr6.3:64853101-64853120 | None:intergenic | 40.0% | |
AAGCAAGTGCATCAATGTGT+TGG | - | chr6.3:64851839-64851858 | MS.gene068456:CDS | 40.0% | |
AATAGAGATGAAAACCTCCC+GGG | + | chr6.3:64851934-64851953 | None:intergenic | 40.0% | |
AATCGAGATTGATCTTTGGC+CGG | + | chr6.3:64852930-64852949 | None:intergenic | 40.0% | |
AATGAGAATGCAACCTGTTC+TGG | + | chr6.3:64853781-64853800 | None:intergenic | 40.0% | |
AATGTGTTGGATGAGATGCA+AGG | - | chr6.3:64851852-64851871 | MS.gene068456:CDS | 40.0% | |
AATTCTGATCTGGGTCATCA+AGG | + | chr6.3:64853076-64853095 | None:intergenic | 40.0% | |
ACAGATACACCAATCAGCAT+GGG | - | chr6.3:64852277-64852296 | MS.gene068456:intron | 40.0% | |
ACGAACCTTGAGGAATTTGT+GGG | + | chr6.3:64853100-64853119 | None:intergenic | 40.0% | |
ACTCCTTTGCATTTCTTGGT+AGG | + | chr6.3:64853495-64853514 | None:intergenic | 40.0% | |
AGAGTGAGAAAAGAATGCCA+TGG | - | chr6.3:64851955-64851974 | MS.gene068456:CDS | 40.0% | |
AGATGCAAGGTCTTGATGAA+AGG | - | chr6.3:64851865-64851884 | MS.gene068456:CDS | 40.0% | |
AGCAGCTGCTTCAAAAATGA+GGG | - | chr6.3:64851779-64851798 | MS.gene068456:CDS | 40.0% | |
AGTCATTTCTTTCTTCACGG+CGG | + | chr6.3:64853672-64853691 | None:intergenic | 40.0% | |
CACCTCTAAACTCATAAGGT+TGG | + | chr6.3:64853465-64853484 | None:intergenic | 40.0% | |
CATGTATTTCAGAAGCTGTG+TGG | - | chr6.3:64852478-64852497 | MS.gene068456:CDS | 40.0% | |
CTAGCACTGTTGAGAATTTC+TGG | + | chr6.3:64852727-64852746 | None:intergenic | 40.0% | |
GAGGAGCAAGTTTCATGATT+GGG | + | chr6.3:64853588-64853607 | None:intergenic | 40.0% | |
GATGATGCGAACATGTTAGA+CGG | - | chr6.3:64851663-64851682 | MS.gene068456:CDS | 40.0% | |
GATGCAAGGTCTTGATGAAA+GGG | - | chr6.3:64851866-64851885 | MS.gene068456:CDS | 40.0% | |
GCGAAATCGAGATTGATCTT+TGG | + | chr6.3:64852934-64852953 | None:intergenic | 40.0% | |
GGGTGATATTGACATGGAAT+TGG | - | chr6.3:64852297-64852316 | MS.gene068456:intron | 40.0% | |
GGTTATTCAGTAGTTTAGGG+GGG | - | chr6.3:64853692-64853711 | MS.gene068456:CDS | 40.0% | |
GTAATAGAGTGATTCAGGAG+CGG | - | chr6.3:64852596-64852615 | MS.gene068456:intron | 40.0% | |
GTACAAACACGTTGGATCAA+AGG | - | chr6.3:64853177-64853196 | MS.gene068456:CDS | 40.0% | |
TACAGATACACCAATCAGCA+TGG | - | chr6.3:64852276-64852295 | MS.gene068456:intron | 40.0% | |
TAGCAGCTGCTTCAAAAATG+AGG | - | chr6.3:64851778-64851797 | MS.gene068456:CDS | 40.0% | |
TATCACGTAACATGGCTCTT+TGG | + | chr6.3:64852513-64852532 | None:intergenic | 40.0% | |
TCAATATCACCCATGCTGAT+TGG | + | chr6.3:64852289-64852308 | None:intergenic | 40.0% | |
TCACCTACCAAGAAATGCAA+AGG | - | chr6.3:64853489-64853508 | MS.gene068456:intron | 40.0% | |
TCTGTGTAGTACAAACACGT+TGG | - | chr6.3:64853169-64853188 | MS.gene068456:CDS | 40.0% | |
TCTTGAATAAATGGGACGAG+TGG | - | chr6.3:64853836-64853855 | MS.gene068456:CDS | 40.0% | |
TGACATGGAATTGGATGAGA+TGG | - | chr6.3:64852306-64852325 | MS.gene068456:intron | 40.0% | |
TGAGGAGCAAGTTTCATGAT+TGG | + | chr6.3:64853589-64853608 | None:intergenic | 40.0% | |
! | CAAAATTTTCCCTGCAACCA+TGG | + | chr6.3:64851975-64851994 | None:intergenic | 40.0% |
! | GGATTTCTTGCTCCTTTTCA+AGG | - | chr6.3:64853430-64853449 | MS.gene068456:intron | 40.0% |
! | GTATTCTTTTCAGACTCAGC+GGG | - | chr6.3:64853609-64853628 | MS.gene068456:CDS | 40.0% |
! | TGAATTTTTGCAACCTCCTG+AGG | - | chr6.3:64852690-64852709 | MS.gene068456:intron | 40.0% |
!! | ACCAGAAGTATCACGTAACA+TGG | + | chr6.3:64852521-64852540 | None:intergenic | 40.0% |
!! | TTCATTTTTCCTGGTTGGGA+AGG | - | chr6.3:64853017-64853036 | MS.gene068456:CDS | 40.0% |
!! | TTTATGGCAGAAGTGCTGAA+TGG | - | chr6.3:64852415-64852434 | MS.gene068456:CDS | 40.0% |
!!! | CTGCAAGCACATTTTGAGAT+AGG | + | chr6.3:64852971-64852990 | None:intergenic | 40.0% |
ACCCAGGAGATGTGGATTTA+TGG | - | chr6.3:64852399-64852418 | MS.gene068456:CDS | 45.0% | |
ACTCGGGTGAAACTATTAGC+CGG | - | chr6.3:64852626-64852645 | MS.gene068456:intron | 45.0% | |
ATCTCCTGGGTGATAAACCA+CGG | + | chr6.3:64852390-64852409 | None:intergenic | 45.0% | |
ATGGCTTTCGATGATGAGGA+TGG | - | chr6.3:64851624-64851643 | MS.gene068456:CDS | 45.0% | |
CAGCATGGGTGATATTGACA+TGG | - | chr6.3:64852291-64852310 | MS.gene068456:intron | 45.0% | |
GAAAAGAATGCCATGGTTGC+AGG | - | chr6.3:64851962-64851981 | MS.gene068456:CDS | 45.0% | |
GATGATGAGGATGGTTCTTC+AGG | - | chr6.3:64851633-64851652 | MS.gene068456:CDS | 45.0% | |
GCAAATTCCTGCACATGTTC+CGG | - | chr6.3:64852908-64852927 | MS.gene068456:CDS | 45.0% | |
GCCATAAATCCACATCTCCT+GGG | + | chr6.3:64852403-64852422 | None:intergenic | 45.0% | |
GCCATGTTACGTGATACTTC+TGG | - | chr6.3:64852517-64852536 | MS.gene068456:CDS | 45.0% | |
GCCGTGAAGAAAGAAATGAC+TGG | - | chr6.3:64853671-64853690 | MS.gene068456:CDS | 45.0% | |
TAGTTTAGGGGGGACATTTG+TGG | - | chr6.3:64853702-64853721 | MS.gene068456:CDS | 45.0% | |
TGCCATAAATCCACATCTCC+TGG | + | chr6.3:64852404-64852423 | None:intergenic | 45.0% | |
TTGAGAATCACCCTAATGCC+CGG | - | chr6.3:64851913-64851932 | MS.gene068456:CDS | 45.0% | |
TTGTCGTGAAATGTTGCGGA+TGG | - | chr6.3:64852450-64852469 | MS.gene068456:CDS | 45.0% | |
! | TCTGGTGATGTTGTATCCTC+AGG | + | chr6.3:64852709-64852728 | None:intergenic | 45.0% |
! | TGGCATCACCAGAAGCTTTT+CGG | + | chr6.3:64851737-64851756 | None:intergenic | 45.0% |
!! | TTGCTCCTTTTCAAGGGGTT+CGG | - | chr6.3:64853437-64853456 | MS.gene068456:intron | 45.0% |
AGCAGCTGCTATCTGCATCA+TGG | + | chr6.3:64851769-64851788 | None:intergenic | 50.0% | |
ATGAAAACCTCCCGGGCATT+AGG | + | chr6.3:64851927-64851946 | None:intergenic | 50.0% | |
CAAGCTAGTGTTCCAGCTAG+TGG | - | chr6.3:64851696-64851715 | MS.gene068456:CDS | 50.0% | |
CACGTAACATGGCTCTTTGG+CGG | + | chr6.3:64852510-64852529 | None:intergenic | 50.0% | |
CTAACAAAACAGCCTTCCCG+TGG | - | chr6.3:64852370-64852389 | MS.gene068456:intron | 50.0% | |
CTGCATCATGGCATCCACTA+TGG | + | chr6.3:64851757-64851776 | None:intergenic | 50.0% | |
GGATGAGATGGAACTCGTTG+CGG | - | chr6.3:64852318-64852337 | MS.gene068456:intron | 50.0% | |
GGTGATGTTGTATCCTCAGG+AGG | + | chr6.3:64852706-64852725 | None:intergenic | 50.0% | |
GGTTTATCACCCAGGAGATG+TGG | - | chr6.3:64852391-64852410 | MS.gene068456:CDS | 50.0% | |
TCTCCTGGGTGATAAACCAC+GGG | + | chr6.3:64852389-64852408 | None:intergenic | 50.0% | |
TGAAAACCTCCCGGGCATTA+GGG | + | chr6.3:64851926-64851945 | None:intergenic | 50.0% | |
TGAACATCGGGAAGTTCGTC+AGG | + | chr6.3:64853742-64853761 | None:intergenic | 50.0% | |
TGAGAATCACCCTAATGCCC+GGG | - | chr6.3:64851914-64851933 | MS.gene068456:CDS | 50.0% | |
TGCCTTTAACACCCGTGAGT+CGG | + | chr6.3:64853051-64853070 | None:intergenic | 50.0% | |
! | AGCTTCTGGTGATGCCATAG+TGG | - | chr6.3:64851740-64851759 | MS.gene068456:CDS | 50.0% |
! | TGGTACCGAACCCCTTGAAA+AGG | + | chr6.3:64853445-64853464 | None:intergenic | 50.0% |
!! | AAGGTTCTGTCACCGACTCA+CGG | - | chr6.3:64853036-64853055 | MS.gene068456:CDS | 50.0% |
AAGAGGGGCCGAAAAGCTTC+TGG | - | chr6.3:64851726-64851745 | MS.gene068456:CDS | 55.0% | |
AGCTAGTGGTGGTCGGAAGA+GGG | - | chr6.3:64851710-64851729 | MS.gene068456:CDS | 55.0% | |
CTGGGTGATAAACCACGGGA+AGG | + | chr6.3:64852385-64852404 | None:intergenic | 55.0% | |
CTTCCCGTGGTTTATCACCC+AGG | - | chr6.3:64852383-64852402 | MS.gene068456:CDS | 55.0% | |
GAGGATGGTTCTTCAGGCTC+AGG | - | chr6.3:64851639-64851658 | MS.gene068456:CDS | 55.0% | |
GCTAGTGTTCCAGCTAGTGG+TGG | - | chr6.3:64851699-64851718 | MS.gene068456:CDS | 55.0% | |
GTGACAGAACCTTCCCAACC+AGG | + | chr6.3:64853029-64853048 | None:intergenic | 55.0% | |
GTGTTCCAGCTAGTGGTGGT+CGG | - | chr6.3:64851703-64851722 | MS.gene068456:CDS | 55.0% | |
TCAGGAGCGGTTTCAGCACT+CGG | - | chr6.3:64852609-64852628 | MS.gene068456:intron | 55.0% | |
TCTTTGGCCGGAACATGTGC+AGG | + | chr6.3:64852918-64852937 | None:intergenic | 55.0% | |
! | CGTTGGATCAAAGGCGTGTC+TGG | - | chr6.3:64853186-64853205 | MS.gene068456:CDS | 55.0% |
!! | AGGTTCTGTCACCGACTCAC+GGG | - | chr6.3:64853037-64853056 | MS.gene068456:CDS | 55.0% |
!! | CACCGACTCACGGGTGTTAA+AGG | - | chr6.3:64853046-64853065 | MS.gene068456:CDS | 55.0% |
CAGCTAGTGGTGGTCGGAAG+AGG | - | chr6.3:64851709-64851728 | MS.gene068456:CDS | 60.0% | |
CAGGAGCGGTTTCAGCACTC+GGG | - | chr6.3:64852610-64852629 | MS.gene068456:intron | 60.0% | |
CTCTTCCGACCACCACTAGC+TGG | + | chr6.3:64851711-64851730 | None:intergenic | 60.0% | |
GAATCACCCTAATGCCCGGG+AGG | - | chr6.3:64851917-64851936 | MS.gene068456:CDS | 60.0% | |
GCTAGTGGTGGTCGGAAGAG+GGG | - | chr6.3:64851711-64851730 | MS.gene068456:CDS | 60.0% | |
!! | CGTGTCAGTGTCGACCGTGT+CGG | + | chr6.3:64853215-64853234 | None:intergenic | 60.0% |
GAACTCGTTGCGGCTGCTGC+TGG | - | chr6.3:64852328-64852347 | MS.gene068456:intron | 65.0% | |
! | GGCGTGTCTGGCTTCCGACA+CGG | - | chr6.3:64853198-64853217 | MS.gene068456:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 64851624 | 64853861 | 64851624 | ID=MS.gene068456 |
chr6.3 | mRNA | 64851624 | 64853861 | 64851624 | ID=MS.gene068456.t1;Parent=MS.gene068456 |
chr6.3 | exon | 64853547 | 64853861 | 64853547 | ID=MS.gene068456.t1.exon1;Parent=MS.gene068456.t1 |
chr6.3 | CDS | 64853547 | 64853861 | 64853547 | ID=cds.MS.gene068456.t1;Parent=MS.gene068456.t1 |
chr6.3 | exon | 64852720 | 64853241 | 64852720 | ID=MS.gene068456.t1.exon2;Parent=MS.gene068456.t1 |
chr6.3 | CDS | 64852720 | 64853241 | 64852720 | ID=cds.MS.gene068456.t1;Parent=MS.gene068456.t1 |
chr6.3 | exon | 64852372 | 64852603 | 64852372 | ID=MS.gene068456.t1.exon3;Parent=MS.gene068456.t1 |
chr6.3 | CDS | 64852372 | 64852603 | 64852372 | ID=cds.MS.gene068456.t1;Parent=MS.gene068456.t1 |
chr6.3 | exon | 64851624 | 64852096 | 64851624 | ID=MS.gene068456.t1.exon4;Parent=MS.gene068456.t1 |
chr6.3 | CDS | 64851624 | 64852096 | 64851624 | ID=cds.MS.gene068456.t1;Parent=MS.gene068456.t1 |
Gene Sequence |
Protein sequence |