Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06956.t1 | XP_003598266.2 | 94.6 | 371 | 20 | 0 | 1 | 371 | 17 | 387 | 1.30E-195 | 692.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06956.t1 | Q8N5I4 | 30.9 | 307 | 181 | 11 | 61 | 358 | 38 | 322 | 4.5e-27 | 123.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06956.t1 | G7J0B2 | 94.6 | 371 | 20 | 0 | 1 | 371 | 17 | 387 | 9.6e-196 | 692.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95938 | MS.gene06956 | PPI |
| MS.gene34141 | MS.gene06956 | PPI |
| MS.gene42492 | MS.gene06956 | PPI |
| MS.gene006262 | MS.gene06956 | PPI |
| MS.gene061155 | MS.gene06956 | PPI |
| MS.gene06956 | MS.gene061154 | PPI |
| MS.gene061158 | MS.gene06956 | PPI |
| MS.gene49118 | MS.gene06956 | PPI |
| MS.gene06956 | MS.gene06120 | PPI |
| MS.gene037994 | MS.gene06956 | PPI |
| MS.gene06956 | MS.gene49117 | PPI |
| MS.gene006264 | MS.gene06956 | PPI |
| MS.gene40431 | MS.gene06956 | PPI |
| MS.gene49120 | MS.gene06956 | PPI |
| MS.gene06956 | MS.gene49121 | PPI |
| MS.gene06956 | MS.gene55839 | PPI |
| MS.gene006265 | MS.gene06956 | PPI |
| MS.gene34138 | MS.gene06956 | PPI |
| MS.gene058995 | MS.gene06956 | PPI |
| MS.gene035607 | MS.gene06956 | PPI |
| MS.gene57782 | MS.gene06956 | PPI |
| MS.gene061157 | MS.gene06956 | PPI |
| MS.gene012538 | MS.gene06956 | PPI |
| MS.gene05158 | MS.gene06956 | PPI |
| MS.gene061893 | MS.gene06956 | PPI |
| MS.gene06956 | MS.gene20199 | PPI |
| MS.gene34140 | MS.gene06956 | PPI |
| MS.gene048973 | MS.gene06956 | PPI |
| MS.gene06956 | MS.gene24053 | PPI |
| MS.gene006263 | MS.gene06956 | PPI |
| MS.gene34137 | MS.gene06956 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06956.t1 | MTR_3g009190 | 94.609 | 371 | 20 | 0 | 1 | 371 | 17 | 387 | 0.0 | 711 |
| MS.gene06956.t1 | MTR_3g009190 | 94.851 | 369 | 19 | 0 | 3 | 371 | 1 | 369 | 0.0 | 709 |
| MS.gene06956.t1 | MTR_6g453040 | 93.372 | 347 | 23 | 0 | 25 | 371 | 1 | 347 | 0.0 | 657 |
| MS.gene06956.t1 | MTR_3g091070 | 90.643 | 342 | 14 | 1 | 25 | 366 | 1 | 324 | 0.0 | 621 |
| MS.gene06956.t1 | MTR_3g009190 | 93.464 | 306 | 20 | 0 | 66 | 371 | 63 | 368 | 0.0 | 575 |
| MS.gene06956.t1 | MTR_6g453040 | 90.175 | 285 | 24 | 1 | 3 | 287 | 1 | 281 | 0.0 | 513 |
| MS.gene06956.t1 | MTR_6g453040 | 94.628 | 242 | 13 | 0 | 3 | 244 | 1 | 242 | 4.00e-165 | 462 |
| MS.gene06956.t1 | MTR_3g009200 | 79.006 | 181 | 26 | 3 | 104 | 281 | 2 | 173 | 3.00e-95 | 282 |
| MS.gene06956.t1 | MTR_6g453030 | 88.312 | 77 | 9 | 0 | 94 | 170 | 1 | 77 | 2.94e-42 | 142 |
| MS.gene06956.t1 | MTR_4g105310 | 29.605 | 304 | 191 | 7 | 62 | 359 | 46 | 332 | 2.40e-29 | 116 |
| MS.gene06956.t1 | MTR_3g077410 | 30.263 | 304 | 189 | 9 | 62 | 359 | 35 | 321 | 1.00e-27 | 111 |
| MS.gene06956.t1 | MTR_8g099995 | 29.139 | 302 | 193 | 7 | 68 | 363 | 39 | 325 | 5.57e-25 | 104 |
| MS.gene06956.t1 | MTR_8g098415 | 31.250 | 304 | 173 | 10 | 67 | 358 | 32 | 311 | 9.29e-25 | 103 |
| MS.gene06956.t1 | MTR_8g098415 | 31.169 | 308 | 170 | 11 | 67 | 359 | 32 | 312 | 1.20e-24 | 102 |
| MS.gene06956.t1 | MTR_7g099850 | 27.687 | 307 | 187 | 9 | 67 | 361 | 37 | 320 | 6.77e-24 | 100 |
| MS.gene06956.t1 | MTR_4g105310 | 30.973 | 226 | 139 | 5 | 62 | 283 | 46 | 258 | 1.13e-23 | 99.4 |
| MS.gene06956.t1 | MTR_1g068970 | 27.303 | 304 | 191 | 9 | 67 | 361 | 37 | 319 | 1.27e-22 | 97.4 |
| MS.gene06956.t1 | MTR_1g100315 | 28.525 | 305 | 182 | 10 | 67 | 359 | 32 | 312 | 5.94e-22 | 95.5 |
| MS.gene06956.t1 | MTR_1g100395 | 27.778 | 306 | 185 | 9 | 67 | 360 | 32 | 313 | 1.05e-21 | 94.7 |
| MS.gene06956.t1 | MTR_1g100305 | 29.545 | 308 | 175 | 10 | 67 | 359 | 32 | 312 | 1.38e-21 | 94.4 |
| MS.gene06956.t1 | MTR_1g100335 | 28.525 | 305 | 182 | 11 | 67 | 359 | 32 | 312 | 3.18e-20 | 90.5 |
| MS.gene06956.t1 | MTR_8g098415 | 30.859 | 256 | 141 | 10 | 115 | 358 | 23 | 254 | 1.03e-19 | 87.8 |
| MS.gene06956.t1 | MTR_6g041980 | 26.908 | 249 | 163 | 8 | 9 | 247 | 8 | 247 | 8.04e-19 | 85.5 |
| MS.gene06956.t1 | MTR_6g053550 | 28.896 | 308 | 180 | 12 | 67 | 359 | 40 | 323 | 1.02e-18 | 86.3 |
| MS.gene06956.t1 | MTR_6g041980 | 25.449 | 334 | 204 | 12 | 9 | 329 | 8 | 309 | 1.93e-18 | 85.9 |
| MS.gene06956.t1 | MTR_1g068970 | 26.172 | 256 | 165 | 8 | 112 | 361 | 15 | 252 | 1.31e-16 | 79.3 |
| MS.gene06956.t1 | MTR_1g100335 | 29.646 | 226 | 136 | 7 | 67 | 285 | 32 | 241 | 6.88e-16 | 77.4 |
| MS.gene06956.t1 | MTR_1g100335 | 29.646 | 226 | 136 | 7 | 67 | 285 | 32 | 241 | 1.24e-15 | 76.6 |
| MS.gene06956.t1 | MTR_6g081020 | 26.074 | 349 | 206 | 14 | 38 | 359 | 34 | 357 | 7.25e-15 | 75.5 |
| MS.gene06956.t1 | MTR_2g079710 | 28.701 | 331 | 201 | 11 | 55 | 359 | 75 | 396 | 2.09e-14 | 74.3 |
| MS.gene06956.t1 | MTR_8g098415 | 31.156 | 199 | 116 | 5 | 67 | 258 | 32 | 216 | 2.77e-14 | 71.6 |
| MS.gene06956.t1 | MTR_6g053600 | 28.854 | 253 | 141 | 10 | 67 | 301 | 26 | 257 | 1.87e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06956.t1 | AT5G04070 | 57.307 | 349 | 147 | 1 | 7 | 355 | 1 | 347 | 9.63e-131 | 379 |
| MS.gene06956.t1 | AT5G15940 | 55.337 | 356 | 158 | 1 | 6 | 360 | 1 | 356 | 5.47e-128 | 372 |
| MS.gene06956.t1 | AT5G15940 | 55.337 | 356 | 158 | 1 | 6 | 360 | 1 | 356 | 5.47e-128 | 372 |
| MS.gene06956.t1 | AT5G15940 | 55.493 | 355 | 157 | 1 | 7 | 360 | 1 | 355 | 1.10e-127 | 371 |
| MS.gene06956.t1 | AT5G15940 | 54.259 | 317 | 144 | 1 | 6 | 321 | 1 | 317 | 1.23e-107 | 318 |
| MS.gene06956.t1 | AT2G37540 | 30.743 | 296 | 175 | 10 | 67 | 353 | 36 | 310 | 1.29e-25 | 105 |
| MS.gene06956.t1 | AT4G23430 | 31.126 | 302 | 177 | 9 | 67 | 358 | 32 | 312 | 2.25e-25 | 105 |
| MS.gene06956.t1 | AT4G23430 | 30.693 | 303 | 175 | 10 | 67 | 358 | 32 | 310 | 9.36e-25 | 103 |
| MS.gene06956.t1 | AT2G37540 | 33.333 | 228 | 135 | 6 | 67 | 290 | 36 | 250 | 4.33e-24 | 100 |
| MS.gene06956.t1 | AT4G24050 | 31.707 | 246 | 137 | 7 | 67 | 300 | 37 | 263 | 1.25e-23 | 99.4 |
| MS.gene06956.t1 | AT4G24050 | 31.837 | 245 | 136 | 7 | 68 | 300 | 38 | 263 | 3.93e-23 | 99.0 |
| MS.gene06956.t1 | AT5G02540 | 29.097 | 299 | 188 | 8 | 74 | 366 | 43 | 323 | 1.48e-22 | 97.4 |
| MS.gene06956.t1 | AT5G50130 | 27.946 | 297 | 191 | 8 | 69 | 359 | 8 | 287 | 1.51e-22 | 97.1 |
| MS.gene06956.t1 | AT4G23420 | 29.508 | 305 | 178 | 12 | 67 | 358 | 32 | 312 | 2.68e-22 | 96.3 |
| MS.gene06956.t1 | AT4G23420 | 29.508 | 305 | 178 | 12 | 67 | 358 | 32 | 312 | 2.68e-22 | 96.3 |
| MS.gene06956.t1 | AT4G23420 | 29.508 | 305 | 178 | 12 | 67 | 358 | 49 | 329 | 4.15e-22 | 96.3 |
| MS.gene06956.t1 | AT4G09750 | 29.520 | 271 | 153 | 10 | 67 | 329 | 46 | 286 | 5.65e-22 | 95.5 |
| MS.gene06956.t1 | AT5G50130 | 29.412 | 221 | 139 | 5 | 67 | 283 | 39 | 246 | 1.09e-21 | 93.6 |
| MS.gene06956.t1 | AT5G50130 | 28.094 | 299 | 191 | 9 | 68 | 359 | 40 | 321 | 1.22e-21 | 95.1 |
| MS.gene06956.t1 | AT5G50130 | 28.270 | 237 | 153 | 5 | 68 | 300 | 40 | 263 | 2.85e-21 | 93.6 |
| MS.gene06956.t1 | AT1G64590 | 30.962 | 239 | 146 | 6 | 68 | 300 | 38 | 263 | 2.98e-21 | 94.0 |
| MS.gene06956.t1 | AT5G50130 | 27.852 | 298 | 191 | 9 | 69 | 359 | 8 | 288 | 3.68e-21 | 93.2 |
| MS.gene06956.t1 | AT5G50130 | 29.224 | 219 | 138 | 5 | 69 | 283 | 8 | 213 | 1.24e-20 | 91.3 |
| MS.gene06956.t1 | AT5G50130 | 29.279 | 222 | 139 | 6 | 67 | 283 | 39 | 247 | 2.46e-20 | 89.7 |
| MS.gene06956.t1 | AT5G50130 | 28.151 | 238 | 153 | 6 | 68 | 300 | 40 | 264 | 6.17e-20 | 89.7 |
| MS.gene06956.t1 | AT4G23420 | 31.416 | 226 | 124 | 9 | 67 | 281 | 32 | 237 | 7.36e-20 | 88.6 |
| MS.gene06956.t1 | AT4G23420 | 32.432 | 222 | 127 | 7 | 67 | 281 | 32 | 237 | 1.45e-19 | 87.8 |
| MS.gene06956.t1 | AT4G11410 | 28.956 | 297 | 181 | 9 | 66 | 353 | 31 | 306 | 2.21e-19 | 88.2 |
| MS.gene06956.t1 | AT5G50130 | 29.091 | 220 | 138 | 6 | 69 | 283 | 8 | 214 | 3.05e-19 | 87.4 |
| MS.gene06956.t1 | AT4G23430 | 28.859 | 298 | 179 | 9 | 67 | 358 | 32 | 302 | 1.37e-18 | 85.9 |
| MS.gene06956.t1 | AT4G23430 | 28.428 | 299 | 177 | 10 | 67 | 358 | 32 | 300 | 3.98e-18 | 84.3 |
| MS.gene06956.t1 | AT5G54190 | 27.586 | 319 | 192 | 12 | 68 | 359 | 96 | 402 | 2.20e-16 | 80.5 |
| MS.gene06956.t1 | AT4G11410 | 29.412 | 221 | 139 | 5 | 67 | 283 | 32 | 239 | 2.66e-16 | 78.6 |
| MS.gene06956.t1 | AT5G53090 | 31.641 | 256 | 145 | 11 | 38 | 286 | 37 | 269 | 1.06e-15 | 78.2 |
| MS.gene06956.t1 | AT4G27760 | 31.890 | 254 | 144 | 12 | 40 | 285 | 37 | 269 | 3.53e-15 | 76.6 |
| MS.gene06956.t1 | AT5G61830 | 26.613 | 248 | 136 | 6 | 66 | 279 | 38 | 273 | 1.67e-14 | 73.9 |
| MS.gene06956.t1 | AT5G61830 | 26.613 | 248 | 136 | 6 | 66 | 279 | 38 | 273 | 1.67e-14 | 73.9 |
| MS.gene06956.t1 | AT5G53100 | 28.254 | 315 | 192 | 11 | 63 | 359 | 43 | 341 | 2.00e-14 | 74.3 |
| MS.gene06956.t1 | AT1G03630 | 27.329 | 322 | 196 | 12 | 64 | 359 | 89 | 398 | 3.19e-13 | 70.9 |
| MS.gene06956.t1 | AT1G03630 | 27.329 | 322 | 196 | 12 | 64 | 359 | 87 | 396 | 3.37e-13 | 70.9 |
| MS.gene06956.t1 | AT4G27440 | 28.814 | 236 | 140 | 7 | 68 | 284 | 92 | 318 | 2.34e-12 | 68.2 |
| MS.gene06956.t1 | AT4G27440 | 28.814 | 236 | 140 | 7 | 68 | 284 | 92 | 318 | 2.34e-12 | 68.2 |
| MS.gene06956.t1 | AT5G51030 | 26.295 | 251 | 141 | 11 | 61 | 279 | 34 | 272 | 4.22e-11 | 63.9 |
Find 83 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGTTACATTAACAATTT+TGG | 0.129013 | 3.1:+73039975 | None:intergenic |
| TTCTCATTACCAATTGTTTA+AGG | 0.132723 | 3.1:-73041661 | MS.gene06956:CDS |
| CCAAAGCTCACGAGCTAATT+TGG | 0.165614 | 3.1:+73037526 | None:intergenic |
| TTCCCTGCGGCAGTGGCTTT+TGG | 0.188298 | 3.1:-73040605 | MS.gene06956:CDS |
| GAAGGATATGTTGTTGTTAT+TGG | 0.221951 | 3.1:-73041424 | MS.gene06956:intron |
| ATGACGCAAACGGGCTTATT+AGG | 0.256187 | 3.1:+73041582 | None:intergenic |
| CCAAATTAGCTCGTGAGCTT+TGG | 0.294441 | 3.1:-73037526 | MS.gene06956:CDS |
| CCAACCTTTGATCTTTGTTA+TGG | 0.302323 | 3.1:+73040699 | None:intergenic |
| GGGAATGATCAATTTGATAA+AGG | 0.312496 | 3.1:-73041763 | MS.gene06956:CDS |
| GTTGATGAGGGAACTGTATC+TGG | 0.316956 | 3.1:-73039773 | MS.gene06956:CDS |
| ATGTAGGCAACTTCTGGCTT+GGG | 0.349440 | 3.1:-73041475 | MS.gene06956:intron |
| ACTGAAGCGCCTACGCCTAT+TGG | 0.350236 | 3.1:-73038420 | MS.gene06956:CDS |
| CAAATTAGCTCGTGAGCTTT+GGG | 0.351969 | 3.1:-73037525 | MS.gene06956:CDS |
| TACTGCATGCAAGCTTTCTA+AGG | 0.358613 | 3.1:-73041446 | MS.gene06956:CDS |
| AACAAGAGCGGCATCAATAA+TGG | 0.358851 | 3.1:+73038373 | None:intergenic |
| GCCACCCAAGACAGGCTTGC+TGG | 0.372458 | 3.1:+73038452 | None:intergenic |
| TATGTAGGCAACTTCTGGCT+TGG | 0.389201 | 3.1:-73041476 | MS.gene06956:intron |
| AGAAGCTTGGTCATAACAAA+TGG | 0.391340 | 3.1:+73040030 | None:intergenic |
| TGCATCAGTGTTGCAGATCC+TGG | 0.392661 | 3.1:-73038506 | MS.gene06956:intron |
| CTCAATTCAATTCTTGAGAA+TGG | 0.399695 | 3.1:-73041712 | MS.gene06956:CDS |
| TACTCATAGATCTGAGCATA+TGG | 0.415666 | 3.1:+73039722 | None:intergenic |
| AGTGCGAATCCTTAAACAAT+TGG | 0.431135 | 3.1:+73041652 | None:intergenic |
| TTCTTCAGTTACTAATATGC+AGG | 0.447497 | 3.1:-73039795 | MS.gene06956:intron |
| ATGATCGGCACAAATTATAT+CGG | 0.464816 | 3.1:-73040054 | MS.gene06956:CDS |
| ACGCCGGTGATGACGCAAAC+GGG | 0.466622 | 3.1:+73041573 | None:intergenic |
| CGCACTCAGAGGATTCCAAT+AGG | 0.477071 | 3.1:+73038405 | None:intergenic |
| AAGTTCCAGCAAGCCTGTCT+TGG | 0.478894 | 3.1:-73038457 | MS.gene06956:CDS |
| TTGTTTCCCTTATTACCAAA+GGG | 0.479422 | 3.1:+73037473 | None:intergenic |
| CACCGACAGCTTTGCCAGAT+GGG | 0.480702 | 3.1:-73039578 | MS.gene06956:CDS |
| AATCCAAAAGCCACTGCCGC+AGG | 0.480743 | 3.1:+73040602 | None:intergenic |
| TCTTGAGAATGGCGTTGCTA+TGG | 0.482908 | 3.1:-73041701 | MS.gene06956:CDS |
| ATGTTTGTTTGTACAACTCC+AGG | 0.484002 | 3.1:+73038488 | None:intergenic |
| AACGGGCTTATTAGGATAAG+TGG | 0.486333 | 3.1:+73041590 | None:intergenic |
| AGTTCCAGCAAGCCTGTCTT+GGG | 0.486423 | 3.1:-73038456 | MS.gene06956:CDS |
| TCTGATGAGATTTACCCATC+TGG | 0.490381 | 3.1:+73039564 | None:intergenic |
| ATGAGAAAATGCAACAGAAA+AGG | 0.493406 | 3.1:+73041677 | None:intergenic |
| TACGCCGGTGATGACGCAAA+CGG | 0.502981 | 3.1:+73041572 | None:intergenic |
| ATTGTTTCCCTTATTACCAA+AGG | 0.508720 | 3.1:+73037472 | None:intergenic |
| TAGCCCTCGGCTGTGACTCT+AGG | 0.508982 | 3.1:+73040520 | None:intergenic |
| ACTCTTTCTCCCAGGATGAT+CGG | 0.513630 | 3.1:-73040069 | MS.gene06956:intron |
| GGATTCCGATTTGCACTGCT+CGG | 0.516338 | 3.1:-73040584 | MS.gene06956:CDS |
| TACTAATATGCAGGTTGATG+AGG | 0.517745 | 3.1:-73039786 | MS.gene06956:CDS |
| CTGTACCGAGCAGTGCAAAT+CGG | 0.519892 | 3.1:+73040579 | None:intergenic |
| CCACCGACAGCTTTGCCAGA+TGG | 0.523592 | 3.1:-73039579 | MS.gene06956:CDS |
| CAAAGAATGCCACCCAAGAC+AGG | 0.524956 | 3.1:+73038444 | None:intergenic |
| CAGCCTGAAAAGCTTTGAGA+TGG | 0.527541 | 3.1:+73040665 | None:intergenic |
| CAGATACTAATAAACAATGC+TGG | 0.527707 | 3.1:-73040559 | MS.gene06956:CDS |
| TCAGTACTTCCCTGCGGCAG+TGG | 0.529421 | 3.1:-73040612 | MS.gene06956:CDS |
| AAGAAGTGGTAATAGAAGCT+TGG | 0.533171 | 3.1:+73040017 | None:intergenic |
| ACAAAATCGTTTCATATCCA+AGG | 0.536777 | 3.1:-73041623 | MS.gene06956:CDS |
| GAAGCTTGGTCATAACAAAT+GGG | 0.550505 | 3.1:+73040031 | None:intergenic |
| TATTGGAATCCTCTGAGTGC+GGG | 0.558043 | 3.1:-73038403 | MS.gene06956:CDS |
| AACTACATCCAATTTGCTAT+CGG | 0.558311 | 3.1:-73037501 | MS.gene06956:CDS |
| ACAGGACTGCTTTCAAGAAG+TGG | 0.566270 | 3.1:+73040003 | None:intergenic |
| GCATGCAAGCTTTCTAAGGA+AGG | 0.570982 | 3.1:-73041442 | MS.gene06956:CDS |
| ACTAATATGCAGGTTGATGA+GGG | 0.578265 | 3.1:-73039785 | MS.gene06956:CDS |
| TACCCATCTGGCAAAGCTGT+CGG | 0.582388 | 3.1:+73039576 | None:intergenic |
| ATCAGAGCAGTTGTTGTCAG+AGG | 0.583512 | 3.1:-73040812 | MS.gene06956:intron |
| AAGCCCGTTTGCGTCATCAC+CGG | 0.588542 | 3.1:-73041576 | MS.gene06956:CDS |
| ATTTGATAAAGGATTTATCA+CGG | 0.588831 | 3.1:-73041752 | MS.gene06956:CDS |
| AAAGATCAAAGGTTGGAATG+AGG | 0.601841 | 3.1:-73040692 | MS.gene06956:CDS |
| ATCCAAAAGCCACTGCCGCA+GGG | 0.603195 | 3.1:+73040603 | None:intergenic |
| ACATCATTTACTCACCGAGC+TGG | 0.604721 | 3.1:-73039958 | MS.gene06956:intron |
| TCCAGCAAGCCTGTCTTGGG+TGG | 0.609392 | 3.1:-73038453 | MS.gene06956:CDS |
| TGATTACTGATCGTAGCCCT+CGG | 0.612315 | 3.1:+73040507 | None:intergenic |
| CAGAGGATTCCAATAGGCGT+AGG | 0.613100 | 3.1:+73038411 | None:intergenic |
| ATCTCCTAGAGTCACAGCCG+AGG | 0.615116 | 3.1:-73040524 | MS.gene06956:CDS |
| CCATAACAAAGATCAAAGGT+TGG | 0.615580 | 3.1:-73040699 | MS.gene06956:CDS |
| GTTTCCCTTATTACCAAAGG+GGG | 0.615866 | 3.1:+73037475 | None:intergenic |
| AGCCTGAAAAGCTTTGAGAT+GGG | 0.618219 | 3.1:+73040666 | None:intergenic |
| TCAAGAATTGAATTGAGCAG+AGG | 0.618735 | 3.1:+73041718 | None:intergenic |
| CCATCTGGCAAAGCTGTCGG+TGG | 0.618971 | 3.1:+73039579 | None:intergenic |
| TAGACCATAACAAAGATCAA+AGG | 0.629385 | 3.1:-73040703 | MS.gene06956:CDS |
| TAATTGACTGAACTGACGAA+AGG | 0.629390 | 3.1:+73040641 | None:intergenic |
| CTATTGGAATCCTCTGAGTG+CGG | 0.632369 | 3.1:-73038404 | MS.gene06956:CDS |
| AAATGATTATCCTACCAGCT+CGG | 0.644742 | 3.1:+73039944 | None:intergenic |
| TAAGTGGAAGGTGAAGACCT+TGG | 0.645367 | 3.1:+73041606 | None:intergenic |
| ACTCACAGGCGGAACAAGAG+CGG | 0.651280 | 3.1:+73038361 | None:intergenic |
| TCTCCTAGAGTCACAGCCGA+GGG | 0.656798 | 3.1:-73040523 | MS.gene06956:CDS |
| GGAATCATTCCCGCACTCAG+AGG | 0.664247 | 3.1:+73038394 | None:intergenic |
| GGCTTATTAGGATAAGTGGA+AGG | 0.667420 | 3.1:+73041594 | None:intergenic |
| TGTTTCCCTTATTACCAAAG+GGG | 0.678642 | 3.1:+73037474 | None:intergenic |
| TAAAGTTCAGTACTTCCCTG+CGG | 0.748172 | 3.1:-73040618 | MS.gene06956:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAACCTATATTTATAAA+AGG | + | chr3.1:73040056-73040075 | None:intergenic | 10.0% |
| !! | AATAACCTATATTTATAAAA+GGG | + | chr3.1:73040055-73040074 | None:intergenic | 10.0% |
| !! | ATAAAACTTTATTATATTTC+TGG | - | chr3.1:73040650-73040669 | MS.gene06956:CDS | 10.0% |
| !! | ACAAAATTCTGAATATTTAT+AGG | - | chr3.1:73040011-73040030 | MS.gene06956:CDS | 15.0% |
| !! | ATAAAAGGAATTAAAACATA+AGG | + | chr3.1:73037880-73037899 | None:intergenic | 15.0% |
| !! | ATAATATAAATCAAAAAGTG+AGG | + | chr3.1:73039317-73039336 | None:intergenic | 15.0% |
| !! | CAAAATTCTGAATATTTATA+GGG | - | chr3.1:73040012-73040031 | MS.gene06956:CDS | 15.0% |
| !! | TATATTAATTATTAGCATCA+TGG | - | chr3.1:73038450-73038469 | MS.gene06956:CDS | 15.0% |
| !!! | ATGCTAATGAAAAATTTTAT+AGG | - | chr3.1:73039951-73039970 | MS.gene06956:intron | 15.0% |
| !!! | ATTAACCCTTTTATAAATAT+AGG | - | chr3.1:73040047-73040066 | MS.gene06956:CDS | 15.0% |
| !!! | TGCTAATGAAAAATTTTATA+GGG | - | chr3.1:73039952-73039971 | MS.gene06956:intron | 15.0% |
| !! | AACATGAATAAAAATCATAC+GGG | - | chr3.1:73040572-73040591 | MS.gene06956:CDS | 20.0% |
| !! | ACAAAACTGTGAATATTTAT+AGG | + | chr3.1:73039794-73039813 | None:intergenic | 20.0% |
| !! | ATAAATAAATTATGCACATC+AGG | + | chr3.1:73038885-73038904 | None:intergenic | 20.0% |
| !! | ATCACAGTAATACATTAATT+AGG | + | chr3.1:73040095-73040114 | None:intergenic | 20.0% |
| !! | ATTAAGATATTTACGATGAA+TGG | + | chr3.1:73038487-73038506 | None:intergenic | 20.0% |
| !! | ATTTGATAAAGGATTTATCA+CGG | - | chr3.1:73037479-73037498 | MS.gene06956:CDS | 20.0% |
| !! | CAAAACTGTGAATATTTATA+GGG | + | chr3.1:73039793-73039812 | None:intergenic | 20.0% |
| !! | CAGAAAATGAATATTAAAAG+TGG | + | chr3.1:73040697-73040716 | None:intergenic | 20.0% |
| !! | CATAATTTATTTATGCTTTG+GGG | - | chr3.1:73038891-73038910 | MS.gene06956:intron | 20.0% |
| !! | CTAAAATCCTGAATTTATAA+TGG | + | chr3.1:73041364-73041383 | None:intergenic | 20.0% |
| !! | GAACATGAATAAAAATCATA+CGG | - | chr3.1:73040571-73040590 | MS.gene06956:CDS | 20.0% |
| !! | GCATAATTTATTTATGCTTT+GGG | - | chr3.1:73038890-73038909 | MS.gene06956:intron | 20.0% |
| !! | TGATTTGACAATTACTAATT+TGG | - | chr3.1:73041487-73041506 | MS.gene06956:intron | 20.0% |
| !! | TGCATAATTTATTTATGCTT+TGG | - | chr3.1:73038889-73038908 | MS.gene06956:intron | 20.0% |
| !!! | AAAAAATTCACCAACATTTT+TGG | + | chr3.1:73039885-73039904 | None:intergenic | 20.0% |
| !!! | AAAACAATGATACACTTTTT+TGG | - | chr3.1:73041270-73041289 | MS.gene06956:intron | 20.0% |
| !!! | AAACAATGATACACTTTTTT+GGG | - | chr3.1:73041271-73041290 | MS.gene06956:intron | 20.0% |
| !!! | AAAGGAAATAAAAGTTGATT+TGG | + | chr3.1:73039712-73039731 | None:intergenic | 20.0% |
| !!! | AAAGTGTGATTTTATTTTGT+AGG | + | chr3.1:73039825-73039844 | None:intergenic | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+GGG | + | chr3.1:73039824-73039843 | None:intergenic | 20.0% |
| !!! | ACATTTTCCTTAAGTATTTT+AGG | - | chr3.1:73039857-73039876 | MS.gene06956:intron | 20.0% |
| !!! | CATTTTCCTTAAGTATTTTA+GGG | - | chr3.1:73039858-73039877 | MS.gene06956:intron | 20.0% |
| !!! | CCATAATTTGATCAATTTTA+CGG | + | chr3.1:73037981-73038000 | None:intergenic | 20.0% |
| !!! | GAAAATCAATAAGTGTTTTA+TGG | + | chr3.1:73039376-73039395 | None:intergenic | 20.0% |
| !!! | TATTAACATTTTGAACTCAA+TGG | + | chr3.1:73041596-73041615 | None:intergenic | 20.0% |
| !!! | TGATGTTACATTAACAATTT+TGG | + | chr3.1:73039259-73039278 | None:intergenic | 20.0% |
| !!! | TTCTATGATTTTTTCTATGT+AGG | - | chr3.1:73037740-73037759 | MS.gene06956:intron | 20.0% |
| ! | AACAAAAATACATGCTAGTT+AGG | + | chr3.1:73039600-73039619 | None:intergenic | 25.0% |
| ! | ATCATGTTCAGTTAAAATAG+AGG | + | chr3.1:73041330-73041349 | None:intergenic | 25.0% |
| ! | ATTGACATAATCACAAGATT+TGG | + | chr3.1:73038053-73038072 | None:intergenic | 25.0% |
| ! | CAAAATTCTATCTTTATCGT+TGG | - | chr3.1:73038784-73038803 | MS.gene06956:intron | 25.0% |
| ! | CCGTAAAATTGATCAAATTA+TGG | - | chr3.1:73037978-73037997 | MS.gene06956:intron | 25.0% |
| ! | GATAAATAACATTGCATCAA+AGG | + | chr3.1:73039061-73039080 | None:intergenic | 25.0% |
| ! | GTACAGATCAATTATTCAAA+AGG | + | chr3.1:73041514-73041533 | None:intergenic | 25.0% |
| ! | GTGAATTGTTAGCATATAAA+AGG | + | chr3.1:73037895-73037914 | None:intergenic | 25.0% |
| ! | TCATGTTCAGTTAAAATAGA+GGG | + | chr3.1:73041329-73041348 | None:intergenic | 25.0% |
| ! | TCTACTTTGTCAAATTTCTA+CGG | - | chr3.1:73038204-73038223 | MS.gene06956:intron | 25.0% |
| ! | TTAATGAAATTTGCAAGAGA+AGG | + | chr3.1:73037699-73037718 | None:intergenic | 25.0% |
| ! | TTATAAAAACACACAACACT+TGG | + | chr3.1:73039749-73039768 | None:intergenic | 25.0% |
| ! | TTCTCATTACCAATTGTTTA+AGG | - | chr3.1:73037570-73037589 | MS.gene06956:CDS | 25.0% |
| !! | AAAGCTTAAAACATTTTGCA+AGG | + | chr3.1:73040626-73040645 | None:intergenic | 25.0% |
| !! | AATAATTTGTAGGAAAGTCA+TGG | + | chr3.1:73040151-73040170 | None:intergenic | 25.0% |
| !! | AGAGCTTTATATAATCACAA+TGG | + | chr3.1:73038006-73038025 | None:intergenic | 25.0% |
| !! | GCTGATGGAAAATTTTTATA+GGG | - | chr3.1:73039921-73039940 | MS.gene06956:intron | 25.0% |
| !! | TCTTTTGAACACACTATTAT+TGG | + | chr3.1:73038324-73038343 | None:intergenic | 25.0% |
| !! | TGCTGATGGAAAATTTTTAT+AGG | - | chr3.1:73039920-73039939 | MS.gene06956:intron | 25.0% |
| !!! | AAAGTGCGATTTTATTTTGT+AGG | - | chr3.1:73039980-73039999 | MS.gene06956:CDS | 25.0% |
| !!! | AAGTGCGATTTTATTTTGTA+GGG | - | chr3.1:73039981-73040000 | MS.gene06956:CDS | 25.0% |
| !!! | AGTGTTGTGTGTTTTTATAA+AGG | - | chr3.1:73039749-73039768 | MS.gene06956:CDS | 25.0% |
| !!! | AGTTCTGAACTTTCAATTAA+AGG | - | chr3.1:73040287-73040306 | MS.gene06956:intron | 25.0% |
| !!! | ATAAGCGTACATTTTTTTTC+AGG | - | chr3.1:73041613-73041632 | MS.gene06956:CDS | 25.0% |
| !!! | ATATTTCTGGTTAATAACCA+TGG | - | chr3.1:73040663-73040682 | MS.gene06956:CDS | 25.0% |
| !!! | CTTATTGATTTTCTCTACAA+TGG | - | chr3.1:73039383-73039402 | MS.gene06956:intron | 25.0% |
| !!! | GTGTTGTGTGTTTTTATAAA+GGG | - | chr3.1:73039750-73039769 | MS.gene06956:CDS | 25.0% |
| !!! | GTTGGTGAATTTTTTTTACA+GGG | - | chr3.1:73039890-73039909 | MS.gene06956:intron | 25.0% |
| !!! | TAAGCGTACATTTTTTTTCA+GGG | - | chr3.1:73041614-73041633 | MS.gene06956:CDS | 25.0% |
| !!! | TATTTCTGGTTAATAACCAT+GGG | - | chr3.1:73040664-73040683 | MS.gene06956:CDS | 25.0% |
| !!! | TGTTGGTGAATTTTTTTTAC+AGG | - | chr3.1:73039889-73039908 | MS.gene06956:intron | 25.0% |
| !!! | TTAAATGTCAACTTTTGAGA+TGG | - | chr3.1:73038933-73038952 | MS.gene06956:intron | 25.0% |
| !!! | TTAACAATTTTGGAAGATAC+AGG | + | chr3.1:73039249-73039268 | None:intergenic | 25.0% |
| AAACCCAAAGTTACTCTTAT+TGG | + | chr3.1:73040522-73040541 | None:intergenic | 30.0% | |
| ACAAAATCGTTTCATATCCA+AGG | - | chr3.1:73037608-73037627 | MS.gene06956:intron | 30.0% | |
| AGTGTGTTCAAAAGACTATT+TGG | - | chr3.1:73038329-73038348 | MS.gene06956:intron | 30.0% | |
| ATAAAGAATAAGCTCGCAAT+TGG | + | chr3.1:73041428-73041447 | None:intergenic | 30.0% | |
| ATACATGCTAGTTAGGAATT+AGG | + | chr3.1:73039593-73039612 | None:intergenic | 30.0% | |
| ATACTTAAGGAAAATGTCAC+AGG | + | chr3.1:73039854-73039873 | None:intergenic | 30.0% | |
| ATCATGTTCTTTCCATTGTT+TGG | - | chr3.1:73038505-73038524 | MS.gene06956:intron | 30.0% | |
| ATGAGAAAATGCAACAGAAA+AGG | + | chr3.1:73037557-73037576 | None:intergenic | 30.0% | |
| ATGATCGGCACAAATTATAT+CGG | - | chr3.1:73039177-73039196 | MS.gene06956:intron | 30.0% | |
| ATTCATCTTGAACTAACACA+AGG | - | chr3.1:73041020-73041039 | MS.gene06956:intron | 30.0% | |
| ATTGTTTCCCTTATTACCAA+AGG | + | chr3.1:73041762-73041781 | None:intergenic | 30.0% | |
| CAGAACTATATGAGAATTAC+AGG | + | chr3.1:73040274-73040293 | None:intergenic | 30.0% | |
| CAGATACTAATAAACAATGC+TGG | - | chr3.1:73038672-73038691 | MS.gene06956:intron | 30.0% | |
| CTATATGAGAATTACAGGTT+TGG | + | chr3.1:73040269-73040288 | None:intergenic | 30.0% | |
| CTCAATTCAATTCTTGAGAA+TGG | - | chr3.1:73037519-73037538 | MS.gene06956:CDS | 30.0% | |
| GAAAGAGTGGAAAATATAGT+TGG | + | chr3.1:73039150-73039169 | None:intergenic | 30.0% | |
| GGATTTCACTCAGAATTAAA+TGG | + | chr3.1:73037932-73037951 | None:intergenic | 30.0% | |
| GGGAATGATCAATTTGATAA+AGG | - | chr3.1:73037468-73037487 | MS.gene06956:CDS | 30.0% | |
| TAAAGAATAAGCTCGCAATT+GGG | + | chr3.1:73041427-73041446 | None:intergenic | 30.0% | |
| TACATGCTAGTTAGGAATTA+GGG | + | chr3.1:73039592-73039611 | None:intergenic | 30.0% | |
| TACTTAAGGAAAATGTCACA+GGG | + | chr3.1:73039853-73039872 | None:intergenic | 30.0% | |
| TAGACCATAACAAAGATCAA+AGG | - | chr3.1:73038528-73038547 | MS.gene06956:intron | 30.0% | |
| TTATTATCCAACGAGTTTGA+AGG | - | chr3.1:73040417-73040436 | MS.gene06956:intron | 30.0% | |
| TTCAAACTCGTTGGATAATA+AGG | + | chr3.1:73040418-73040437 | None:intergenic | 30.0% | |
| TTCTTCAGTTACTAATATGC+AGG | - | chr3.1:73039436-73039455 | MS.gene06956:intron | 30.0% | |
| TTGTTTCCCTTATTACCAAA+GGG | + | chr3.1:73041761-73041780 | None:intergenic | 30.0% | |
| TTTGGTCCCTAAAATACTTA+AGG | + | chr3.1:73039867-73039886 | None:intergenic | 30.0% | |
| ! | ACCTTTTATTGTGTTATGCA+AGG | + | chr3.1:73038830-73038849 | None:intergenic | 30.0% |
| ! | CACATTGGATGCATTTTTAT+GGG | - | chr3.1:73039033-73039052 | MS.gene06956:intron | 30.0% |
| ! | CTTGGGAAACAATAATTTGT+AGG | + | chr3.1:73040161-73040180 | None:intergenic | 30.0% |
| ! | GAAGGATATGTTGTTGTTAT+TGG | - | chr3.1:73037807-73037826 | MS.gene06956:intron | 30.0% |
| !! | AACTACATCCAATTTGCTAT+CGG | - | chr3.1:73041730-73041749 | MS.gene06956:CDS | 30.0% |
| !! | ATTTTAGGGACCAAAAATGT+TGG | - | chr3.1:73039872-73039891 | MS.gene06956:intron | 30.0% |
| !!! | ATTTTTTTTCAGGGAACATC+AGG | - | chr3.1:73041623-73041642 | MS.gene06956:CDS | 30.0% |
| AAAGATCAAAGGTTGGAATG+AGG | - | chr3.1:73038539-73038558 | MS.gene06956:intron | 35.0% | |
| AAATGATTATCCTACCAGCT+CGG | + | chr3.1:73039290-73039309 | None:intergenic | 35.0% | |
| AAGAAGTGGTAATAGAAGCT+TGG | + | chr3.1:73039217-73039236 | None:intergenic | 35.0% | |
| ACAACACTTGGAAAAAAGGA+TGG | + | chr3.1:73039737-73039756 | None:intergenic | 35.0% | |
| ACACACAACACTTGGAAAAA+AGG | + | chr3.1:73039741-73039760 | None:intergenic | 35.0% | |
| ACTTTCTATTAGTGCATGTC+TGG | + | chr3.1:73038088-73038107 | None:intergenic | 35.0% | |
| AGAAGCTTGGTCATAACAAA+TGG | + | chr3.1:73039204-73039223 | None:intergenic | 35.0% | |
| AGACATGCACTAATAGAAAG+TGG | - | chr3.1:73038087-73038106 | MS.gene06956:intron | 35.0% | |
| AGCACCAATAAGAGTAACTT+TGG | - | chr3.1:73040515-73040534 | MS.gene06956:CDS | 35.0% | |
| AGTGCGAATCCTTAAACAAT+TGG | + | chr3.1:73037582-73037601 | None:intergenic | 35.0% | |
| ATGTTTGTTTGTACAACTCC+AGG | + | chr3.1:73040746-73040765 | None:intergenic | 35.0% | |
| CAATCCATAACAGGAATCTT+AGG | + | chr3.1:73038386-73038405 | None:intergenic | 35.0% | |
| CCAACCTTTGATCTTTGTTA+TGG | + | chr3.1:73038535-73038554 | None:intergenic | 35.0% | |
| CCATAACAAAGATCAAAGGT+TGG | - | chr3.1:73038532-73038551 | MS.gene06956:intron | 35.0% | |
| CGTCTCTCCATTATAAATTC+AGG | - | chr3.1:73041354-73041373 | MS.gene06956:intron | 35.0% | |
| CTCTCTTGTTAAGGATACAA+CGG | - | chr3.1:73040330-73040349 | MS.gene06956:intron | 35.0% | |
| CTCTTAGTTTCACAAGTTTG+AGG | - | chr3.1:73041385-73041404 | MS.gene06956:intron | 35.0% | |
| CTCTTATGAAAACTCACTTG+TGG | - | chr3.1:73040467-73040486 | MS.gene06956:intron | 35.0% | |
| CTTACCTAAGATTCCTGTTA+TGG | - | chr3.1:73038379-73038398 | MS.gene06956:CDS | 35.0% | |
| GAAGAAAAAAGAACTTACGC+CGG | + | chr3.1:73037677-73037696 | None:intergenic | 35.0% | |
| GAAGCTTGGTCATAACAAAT+GGG | + | chr3.1:73039203-73039222 | None:intergenic | 35.0% | |
| GCACCAATAAGAGTAACTTT+GGG | - | chr3.1:73040516-73040535 | MS.gene06956:CDS | 35.0% | |
| GCCTTGCATAACACAATAAA+AGG | - | chr3.1:73038826-73038845 | MS.gene06956:intron | 35.0% | |
| GTAAGAAATATCAGTGATCG+AGG | + | chr3.1:73041547-73041566 | None:intergenic | 35.0% | |
| GTTGTATCCTTAACAAGAGA+GGG | + | chr3.1:73040331-73040350 | None:intergenic | 35.0% | |
| TAATTGACTGAACTGACGAA+AGG | + | chr3.1:73038593-73038612 | None:intergenic | 35.0% | |
| TACTCATAGATCTGAGCATA+TGG | + | chr3.1:73039512-73039531 | None:intergenic | 35.0% | |
| TATCAGTTCCATAAAGTTCC+TGG | + | chr3.1:73038982-73039001 | None:intergenic | 35.0% | |
| TCAAGAATTGAATTGAGCAG+AGG | + | chr3.1:73037516-73037535 | None:intergenic | 35.0% | |
| TCTGGTGTATGTGTCTATAT+TGG | - | chr3.1:73038259-73038278 | MS.gene06956:intron | 35.0% | |
| TGATGTTTCAAAGTGACTGA+AGG | - | chr3.1:73040945-73040964 | MS.gene06956:intron | 35.0% | |
| TGTTATGGTCTACCAAACAA+TGG | + | chr3.1:73038520-73038539 | None:intergenic | 35.0% | |
| TGTTTCCCTTATTACCAAAG+GGG | + | chr3.1:73041760-73041779 | None:intergenic | 35.0% | |
| TTCAAGATGAATTACCGACA+CGG | + | chr3.1:73041012-73041031 | None:intergenic | 35.0% | |
| TTGGAAAAAAGGATGGCAAA+AGG | + | chr3.1:73039730-73039749 | None:intergenic | 35.0% | |
| TTTAGCAGTACAAAAACACG+AGG | + | chr3.1:73041213-73041232 | None:intergenic | 35.0% | |
| ! | CATTTTTCCTTCAAACTCGT+TGG | + | chr3.1:73040427-73040446 | None:intergenic | 35.0% |
| ! | GCACATTGGATGCATTTTTA+TGG | - | chr3.1:73039032-73039051 | MS.gene06956:intron | 35.0% |
| ! | TTTTCTATGTAGGCAACTTC+TGG | - | chr3.1:73037750-73037769 | MS.gene06956:intron | 35.0% |
| !! | AATTAGTCTTGAGTCTTGAC+TGG | - | chr3.1:73041568-73041587 | MS.gene06956:intron | 35.0% |
| !! | ACTAATATGCAGGTTGATGA+GGG | - | chr3.1:73039446-73039465 | MS.gene06956:intron | 35.0% |
| !! | ACTGCTAAAAAAGTACTCAC+AGG | + | chr3.1:73040887-73040906 | None:intergenic | 35.0% |
| !! | AGAAGCATTTGTATGCACAT+TGG | - | chr3.1:73039018-73039037 | MS.gene06956:intron | 35.0% |
| !! | TACTAATATGCAGGTTGATG+AGG | - | chr3.1:73039445-73039464 | MS.gene06956:intron | 35.0% |
| !!! | ACATCAGGAGCTTACTTTTT+TGG | - | chr3.1:73041638-73041657 | MS.gene06956:CDS | 35.0% |
| !!! | ATCAGGAGCTTACTTTTTTG+GGG | - | chr3.1:73041640-73041659 | MS.gene06956:CDS | 35.0% |
| !!! | CATCAGGAGCTTACTTTTTT+GGG | - | chr3.1:73041639-73041658 | MS.gene06956:CDS | 35.0% |
| AACAAGAGCGGCATCAATAA+TGG | + | chr3.1:73040861-73040880 | None:intergenic | 40.0% | |
| AATAAGGTAGCTGTAGCTTC+AGG | + | chr3.1:73040402-73040421 | None:intergenic | 40.0% | |
| ACAATCTTTGTCTCCCAACA+AGG | - | chr3.1:73040363-73040382 | MS.gene06956:intron | 40.0% | |
| AGAGCTTGAGAAGGTTCTAT+AGG | + | chr3.1:73039415-73039434 | None:intergenic | 40.0% | |
| ATAAGGTAGCTGTAGCTTCA+GGG | + | chr3.1:73040401-73040420 | None:intergenic | 40.0% | |
| ATTTGCATGACATGATCACC+AGG | - | chr3.1:73038961-73038980 | MS.gene06956:intron | 40.0% | |
| CAAATTAGCTCGTGAGCTTT+GGG | - | chr3.1:73041706-73041725 | MS.gene06956:CDS | 40.0% | |
| CATGATCACCAGGAACTTTA+TGG | - | chr3.1:73038971-73038990 | MS.gene06956:intron | 40.0% | |
| CGTAGGCTAGGTTATTTAGT+GGG | - | chr3.1:73038292-73038311 | MS.gene06956:intron | 40.0% | |
| CGTTGTATCCTTAACAAGAG+AGG | + | chr3.1:73040332-73040351 | None:intergenic | 40.0% | |
| CTCAGACAGTTAGACAAACA+TGG | + | chr3.1:73039099-73039118 | None:intergenic | 40.0% | |
| CTGAAGAAAAGAGCTTGAGA+AGG | + | chr3.1:73039424-73039443 | None:intergenic | 40.0% | |
| CTTCTAATCTTCTGTGCTTG+TGG | - | chr3.1:73038757-73038776 | MS.gene06956:intron | 40.0% | |
| CTTTAGTGTTGTGTTGTGTC+TGG | - | chr3.1:73038241-73038260 | MS.gene06956:intron | 40.0% | |
| GACAGTAAAACCCAAAGAGT+AGG | + | chr3.1:73039351-73039370 | None:intergenic | 40.0% | |
| GGCTTATTAGGATAAGTGGA+AGG | + | chr3.1:73037640-73037659 | None:intergenic | 40.0% | |
| GGTTGTGCAGAAAAGAACTT+GGG | + | chr3.1:73040178-73040197 | None:intergenic | 40.0% | |
| GTCTAGTGATCCTACTCTTT+GGG | - | chr3.1:73039338-73039357 | MS.gene06956:intron | 40.0% | |
| GTTTCCCTTATTACCAAAGG+GGG | + | chr3.1:73041759-73041778 | None:intergenic | 40.0% | |
| TAAAAGTGGAGTAGAACCCA+TGG | + | chr3.1:73040683-73040702 | None:intergenic | 40.0% | |
| TAAAGTTCAGTACTTCCCTG+CGG | - | chr3.1:73038613-73038632 | MS.gene06956:intron | 40.0% | |
| TACAGGGACTAAAATGCTGA+TGG | - | chr3.1:73039906-73039925 | MS.gene06956:intron | 40.0% | |
| TACTGCATGCAAGCTTTCTA+AGG | - | chr3.1:73037785-73037804 | MS.gene06956:intron | 40.0% | |
| TATGCATCCCTCTCTTGTTA+AGG | - | chr3.1:73040321-73040340 | MS.gene06956:intron | 40.0% | |
| TCTGATGAGATTTACCCATC+TGG | + | chr3.1:73039670-73039689 | None:intergenic | 40.0% | |
| TGTCTAGTGATCCTACTCTT+TGG | - | chr3.1:73039337-73039356 | MS.gene06956:intron | 40.0% | |
| TTAGTGCATGTCTGGATTGA+TGG | + | chr3.1:73038080-73038099 | None:intergenic | 40.0% | |
| ! | AACGGGCTTATTAGGATAAG+TGG | + | chr3.1:73037644-73037663 | None:intergenic | 40.0% |
| ! | ATAATTTGTGCCGATCATCC+TGG | + | chr3.1:73039175-73039194 | None:intergenic | 40.0% |
| ! | ATATTGGTGCTTCATTGCGT+AGG | - | chr3.1:73038275-73038294 | MS.gene06956:intron | 40.0% |
| ! | CTGTTATGGATTGATGCAGT+GGG | - | chr3.1:73038393-73038412 | MS.gene06956:CDS | 40.0% |
| ! | TAATTTGTGCCGATCATCCT+GGG | + | chr3.1:73039174-73039193 | None:intergenic | 40.0% |
| ! | TATTTTCCACTCTTTCTCCC+AGG | - | chr3.1:73039154-73039173 | MS.gene06956:intron | 40.0% |
| !! | ACAAGGCATTGTCTTCAGAT+TGG | + | chr3.1:73040232-73040251 | None:intergenic | 40.0% |
| !! | AGCCTGAAAAGCTTTGAGAT+GGG | + | chr3.1:73038568-73038587 | None:intergenic | 40.0% |
| !! | GCTAAAAAAGTACTCACAGG+CGG | + | chr3.1:73040884-73040903 | None:intergenic | 40.0% |
| !!! | TCAGGAGCTTACTTTTTTGG+GGG | - | chr3.1:73041641-73041660 | MS.gene06956:CDS | 40.0% |
| AATGCGTGTTTGACACGTGT+TGG | - | chr3.1:73038138-73038157 | MS.gene06956:intron | 45.0% | |
| ACAGGACTGCTTTCAAGAAG+TGG | + | chr3.1:73039231-73039250 | None:intergenic | 45.0% | |
| ACATCATTTACTCACCGAGC+TGG | - | chr3.1:73039273-73039292 | MS.gene06956:intron | 45.0% | |
| ACTCTTTCTCCCAGGATGAT+CGG | - | chr3.1:73039162-73039181 | MS.gene06956:intron | 45.0% | |
| AGATAGTGTTGCAACTCGCA+AGG | - | chr3.1:73040543-73040562 | MS.gene06956:CDS | 45.0% | |
| AGATGAATTACCGACACGGA+AGG | + | chr3.1:73041008-73041027 | None:intergenic | 45.0% | |
| ATCAGAGCAGTTGTTGTCAG+AGG | - | chr3.1:73038419-73038438 | MS.gene06956:CDS | 45.0% | |
| ATCATTTCGTCTGACTGTGC+TGG | + | chr3.1:73041102-73041121 | None:intergenic | 45.0% | |
| ATTACCGACACGGAAGGATA+AGG | + | chr3.1:73041002-73041021 | None:intergenic | 45.0% | |
| CCAAAGCTCACGAGCTAATT+TGG | + | chr3.1:73041708-73041727 | None:intergenic | 45.0% | |
| CCAAATTAGCTCGTGAGCTT+TGG | - | chr3.1:73041705-73041724 | MS.gene06956:CDS | 45.0% | |
| CCACTGCATCAATCCATAAC+AGG | + | chr3.1:73038395-73038414 | None:intergenic | 45.0% | |
| CGAAGCATGCACTTAGAAAG+TGG | + | chr3.1:73037953-73037972 | None:intergenic | 45.0% | |
| CTATTGGAATCCTCTGAGTG+CGG | - | chr3.1:73040827-73040846 | MS.gene06956:intron | 45.0% | |
| GCGTAGGCTAGGTTATTTAG+TGG | - | chr3.1:73038291-73038310 | MS.gene06956:intron | 45.0% | |
| GGGTTGTGCAGAAAAGAACT+TGG | + | chr3.1:73040179-73040198 | None:intergenic | 45.0% | |
| TAAGGTAGCTGTAGCTTCAG+GGG | + | chr3.1:73040400-73040419 | None:intergenic | 45.0% | |
| TAAGTGGAAGGTGAAGACCT+TGG | + | chr3.1:73037628-73037647 | None:intergenic | 45.0% | |
| TATTGGAATCCTCTGAGTGC+GGG | - | chr3.1:73040828-73040847 | MS.gene06956:intron | 45.0% | |
| TCTTGAGAATGGCGTTGCTA+TGG | - | chr3.1:73037530-73037549 | MS.gene06956:CDS | 45.0% | |
| TGATTACTGATCGTAGCCCT+CGG | + | chr3.1:73038727-73038746 | None:intergenic | 45.0% | |
| TGGCATGAGATCAACAGACA+AGG | + | chr3.1:73040249-73040268 | None:intergenic | 45.0% | |
| ! | ATGACGCAAACGGGCTTATT+AGG | + | chr3.1:73037652-73037671 | None:intergenic | 45.0% |
| ! | CCTGTTATGGATTGATGCAG+TGG | - | chr3.1:73038392-73038411 | MS.gene06956:CDS | 45.0% |
| ! | GCATGCAAGCTTTCTAAGGA+AGG | - | chr3.1:73037789-73037808 | MS.gene06956:intron | 45.0% |
| ! | GTTGATGAGGGAACTGTATC+TGG | - | chr3.1:73039458-73039477 | MS.gene06956:intron | 45.0% |
| ! | TATGTAGGCAACTTCTGGCT+TGG | - | chr3.1:73037755-73037774 | MS.gene06956:intron | 45.0% |
| ! | TTCTTTTCTGCACAACCCGT+GGG | - | chr3.1:73040181-73040200 | MS.gene06956:intron | 45.0% |
| !! | ATGTAGGCAACTTCTGGCTT+GGG | - | chr3.1:73037756-73037775 | MS.gene06956:intron | 45.0% |
| !! | CAGCCTGAAAAGCTTTGAGA+TGG | + | chr3.1:73038569-73038588 | None:intergenic | 45.0% |
| !! | TGCTTTGGGGATGCAGTAAT+AGG | - | chr3.1:73038904-73038923 | MS.gene06956:intron | 45.0% |
| !!! | CAGGAGCTTACTTTTTTGGG+GGG | - | chr3.1:73041642-73041661 | MS.gene06956:CDS | 45.0% |
| !!! | GCTTACTTTTTTGGGGGGAA+AGG | - | chr3.1:73041647-73041666 | MS.gene06956:CDS | 45.0% |
| AAGTTCCAGCAAGCCTGTCT+TGG | - | chr3.1:73040774-73040793 | MS.gene06956:intron | 50.0% | |
| AGTTCCAGCAAGCCTGTCTT+GGG | - | chr3.1:73040775-73040794 | MS.gene06956:intron | 50.0% | |
| CAAAGAATGCCACCCAAGAC+AGG | + | chr3.1:73040790-73040809 | None:intergenic | 50.0% | |
| CAGAGGATTCCAATAGGCGT+AGG | + | chr3.1:73040823-73040842 | None:intergenic | 50.0% | |
| CATTTACTCACCGAGCTGGT+AGG | - | chr3.1:73039277-73039296 | MS.gene06956:intron | 50.0% | |
| CGCACTCAGAGGATTCCAAT+AGG | + | chr3.1:73040829-73040848 | None:intergenic | 50.0% | |
| CTGTACCGAGCAGTGCAAAT+CGG | + | chr3.1:73038655-73038674 | None:intergenic | 50.0% | |
| GATCATCCTGGGAGAAAGAG+TGG | + | chr3.1:73039163-73039182 | None:intergenic | 50.0% | |
| GATGCCTTATCCTTCCGTGT+CGG | - | chr3.1:73040995-73041014 | MS.gene06956:intron | 50.0% | |
| TACCCATCTGGCAAAGCTGT+CGG | + | chr3.1:73039658-73039677 | None:intergenic | 50.0% | |
| TGCATCAGTGTTGCAGATCC+TGG | - | chr3.1:73040725-73040744 | MS.gene06956:intron | 50.0% | |
| TTGCCAAAAGCAAGAGCCCA+CGG | + | chr3.1:73040200-73040219 | None:intergenic | 50.0% | |
| ! | ACACGGAAGGATAAGGCATC+AGG | + | chr3.1:73040995-73041014 | None:intergenic | 50.0% |
| ! | CGCCCATCTCAAAGCTTTTC+AGG | - | chr3.1:73038563-73038582 | MS.gene06956:intron | 50.0% |
| ! | GCGACCCCCTTTGGTAATAA+GGG | - | chr3.1:73041752-73041771 | MS.gene06956:CDS | 50.0% |
| ! | GGATTCCGATTTGCACTGCT+CGG | - | chr3.1:73038647-73038666 | MS.gene06956:intron | 50.0% |
| ! | GTTCTTTTCTGCACAACCCG+TGG | - | chr3.1:73040180-73040199 | MS.gene06956:intron | 50.0% |
| AAGCCCGTTTGCGTCATCAC+CGG | - | chr3.1:73037655-73037674 | MS.gene06956:intron | 55.0% | |
| AATCCAAAAGCCACTGCCGC+AGG | + | chr3.1:73038632-73038651 | None:intergenic | 55.0% | |
| ACTCACAGGCGGAACAAGAG+CGG | + | chr3.1:73040873-73040892 | None:intergenic | 55.0% | |
| ATCCAAAAGCCACTGCCGCA+GGG | + | chr3.1:73038631-73038650 | None:intergenic | 55.0% | |
| ATCTCCTAGAGTCACAGCCG+AGG | - | chr3.1:73038707-73038726 | MS.gene06956:intron | 55.0% | |
| CACCGACAGCTTTGCCAGAT+GGG | - | chr3.1:73039653-73039672 | MS.gene06956:intron | 55.0% | |
| GGAATCATTCCCGCACTCAG+AGG | + | chr3.1:73040840-73040859 | None:intergenic | 55.0% | |
| GGCGGAGTATGCTCCTTGTT+GGG | + | chr3.1:73040379-73040398 | None:intergenic | 55.0% | |
| GGTGCTTCATTGCGTAGGCT+AGG | - | chr3.1:73038280-73038299 | MS.gene06956:intron | 55.0% | |
| TCTCCTAGAGTCACAGCCGA+GGG | - | chr3.1:73038708-73038727 | MS.gene06956:intron | 55.0% | |
| TGCCAAAAGCAAGAGCCCAC+GGG | + | chr3.1:73040199-73040218 | None:intergenic | 55.0% | |
| ! | AACCCGTGGGCTCTTGCTTT+TGG | - | chr3.1:73040194-73040213 | MS.gene06956:intron | 55.0% |
| ! | ACTGAAGCGCCTACGCCTAT+TGG | - | chr3.1:73040811-73040830 | MS.gene06956:intron | 55.0% |
| ! | GGCGACCCCCTTTGGTAATA+AGG | - | chr3.1:73041751-73041770 | MS.gene06956:CDS | 55.0% |
| ! | TACGCCGGTGATGACGCAAA+CGG | + | chr3.1:73037662-73037681 | None:intergenic | 55.0% |
| !! | GTGCTGGTTTGTGTGTGTGC+AGG | + | chr3.1:73041086-73041105 | None:intergenic | 55.0% |
| CCACCGACAGCTTTGCCAGA+TGG | - | chr3.1:73039652-73039671 | MS.gene06956:intron | 60.0% | |
| CCATCTGGCAAAGCTGTCGG+TGG | + | chr3.1:73039655-73039674 | None:intergenic | 60.0% | |
| GGGCGGAGTATGCTCCTTGT+TGG | + | chr3.1:73040380-73040399 | None:intergenic | 60.0% | |
| GGGGGTCGCCGATAGCAAAT+TGG | + | chr3.1:73041741-73041760 | None:intergenic | 60.0% | |
| GGTAGCTGTAGCTTCAGGGG+CGG | + | chr3.1:73040397-73040416 | None:intergenic | 60.0% | |
| TAGCCCTCGGCTGTGACTCT+AGG | + | chr3.1:73038714-73038733 | None:intergenic | 60.0% | |
| TCAGTACTTCCCTGCGGCAG+TGG | - | chr3.1:73038619-73038638 | MS.gene06956:intron | 60.0% | |
| TCCAGCAAGCCTGTCTTGGG+TGG | - | chr3.1:73040778-73040797 | MS.gene06956:intron | 60.0% | |
| TTGCTATCGGCGACCCCCTT+TGG | - | chr3.1:73041743-73041762 | MS.gene06956:CDS | 60.0% | |
| ! | ACGCCGGTGATGACGCAAAC+GGG | + | chr3.1:73037661-73037680 | None:intergenic | 60.0% |
| ! | TTCCCTGCGGCAGTGGCTTT+TGG | - | chr3.1:73038626-73038645 | MS.gene06956:intron | 60.0% |
| GCCACCCAAGACAGGCTTGC+TGG | + | chr3.1:73040782-73040801 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 73037466 | 73041787 | 73037466 | ID=MS.gene06956 |
| chr3.1 | mRNA | 73037466 | 73041787 | 73037466 | ID=MS.gene06956.t1;Parent=MS.gene06956 |
| chr3.1 | exon | 73041575 | 73041787 | 73041575 | ID=MS.gene06956.t1.exon1;Parent=MS.gene06956.t1 |
| chr3.1 | CDS | 73041575 | 73041787 | 73041575 | ID=cds.MS.gene06956.t1;Parent=MS.gene06956.t1 |
| chr3.1 | exon | 73041425 | 73041491 | 73041425 | ID=MS.gene06956.t1.exon2;Parent=MS.gene06956.t1 |
| chr3.1 | CDS | 73041425 | 73041491 | 73041425 | ID=cds.MS.gene06956.t1;Parent=MS.gene06956.t1 |
| chr3.1 | exon | 73040813 | 73040841 | 73040813 | ID=MS.gene06956.t1.exon3;Parent=MS.gene06956.t1 |
| chr3.1 | CDS | 73040813 | 73040841 | 73040813 | ID=cds.MS.gene06956.t1;Parent=MS.gene06956.t1 |
| chr3.1 | exon | 73040514 | 73040722 | 73040514 | ID=MS.gene06956.t1.exon4;Parent=MS.gene06956.t1 |
| chr3.1 | CDS | 73040514 | 73040722 | 73040514 | ID=cds.MS.gene06956.t1;Parent=MS.gene06956.t1 |
| chr3.1 | exon | 73039959 | 73040077 | 73039959 | ID=MS.gene06956.t1.exon5;Parent=MS.gene06956.t1 |
| chr3.1 | CDS | 73039959 | 73040077 | 73039959 | ID=cds.MS.gene06956.t1;Parent=MS.gene06956.t1 |
| chr3.1 | exon | 73039714 | 73039809 | 73039714 | ID=MS.gene06956.t1.exon6;Parent=MS.gene06956.t1 |
| chr3.1 | CDS | 73039714 | 73039809 | 73039714 | ID=cds.MS.gene06956.t1;Parent=MS.gene06956.t1 |
| chr3.1 | exon | 73039554 | 73039629 | 73039554 | ID=MS.gene06956.t1.exon7;Parent=MS.gene06956.t1 |
| chr3.1 | CDS | 73039554 | 73039629 | 73039554 | ID=cds.MS.gene06956.t1;Parent=MS.gene06956.t1 |
| chr3.1 | exon | 73038367 | 73038520 | 73038367 | ID=MS.gene06956.t1.exon8;Parent=MS.gene06956.t1 |
| chr3.1 | CDS | 73038367 | 73038520 | 73038367 | ID=cds.MS.gene06956.t1;Parent=MS.gene06956.t1 |
| chr3.1 | exon | 73037466 | 73037618 | 73037466 | ID=MS.gene06956.t1.exon9;Parent=MS.gene06956.t1 |
| chr3.1 | CDS | 73037466 | 73037618 | 73037466 | ID=cds.MS.gene06956.t1;Parent=MS.gene06956.t1 |
| Gene Sequence |
| Protein sequence |
