AlfalfaGEDB | MS.gene072017

M. sativa cultivar XinJiangDaYe / MS.gene072017

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF13041.9 PF17177.7

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072017.t1	XP_003593032.1	92.9	479	34	0	77	555	147	625	8.00E-112	414.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072017.t1	Q0WVV0	73.3	146	39	0	404	549	502	647	2.0e-55	218.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072017.t1	G7IPH3	92.9	479	34	0	77	555	147	625	5.8e-112	414.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051525	MS.gene072017	0.806814	6.85E-50	-1.69E-46
MS.gene052253	MS.gene072017	0.810686	1.02E-50	-1.69E-46
MS.gene053836	MS.gene072017	0.801169	1.02E-48	-1.69E-46
MS.gene057121	MS.gene072017	0.81207	5.10E-51	-1.69E-46
MS.gene05811	MS.gene072017	0.831229	1.88E-55	-1.69E-46
MS.gene05907	MS.gene072017	0.828003	1.14E-54	-1.69E-46
MS.gene05984	MS.gene072017	0.818954	1.50E-52	-1.69E-46
MS.gene060986	MS.gene072017	0.812512	4.08E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene016742	MS.gene072017	PPI
MS.gene016743	MS.gene072017	PPI
MS.gene034509	MS.gene072017	PPI
MS.gene057886	MS.gene072017	PPI
MS.gene070505	MS.gene072017	PPI
MS.gene072017	MS.gene000106	PPI
MS.gene072017	MS.gene070510	PPI
MS.gene072017	MS.gene38106	PPI
MS.gene072017	MS.gene070509	PPI
MS.gene072017	MS.gene67840	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072017.t1	MTR_2g007030	97.286	479	13	0	77	555	147	625	0.0	976
MS.gene072017.t1	MTR_2g007030	25.214	234	171	3	125	356	90	321	5.10e-13	72.0
MS.gene072017.t1	MTR_6g023775	95.890	73	3	0	4	76	90	162	9.52e-41	145
MS.gene072017.t1	MTR_3g037490	29.003	331	232	3	78	407	98	426	5.56e-40	153
MS.gene072017.t1	MTR_3g037490	24.583	240	173	2	144	379	93	328	1.08e-19	93.2
MS.gene072017.t1	MTR_5g079130	77.174	92	16	1	1	87	1	92	8.00e-40	140
MS.gene072017.t1	MTR_1g057450	89.189	74	8	0	1	74	1	74	1.09e-37	134
MS.gene072017.t1	MTR_5g090210	29.226	349	239	4	44	391	254	595	6.24e-36	143
MS.gene072017.t1	MTR_5g090210	25.836	329	243	1	80	408	390	717	3.01e-29	123
MS.gene072017.t1	MTR_5g090210	27.365	296	214	1	87	382	362	656	1.56e-28	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072017.t1	AT1G10910	67.865	473	152	0	77	549	175	647	0.0	676
MS.gene072017.t1	AT1G10910	66.829	410	136	0	77	486	175	584	0.0	590
MS.gene072017.t1	AT2G31400	27.445	317	195	1	80	361	280	596	2.32e-38	151
MS.gene072017.t1	AT2G31400	26.198	313	207	4	74	365	382	691	3.79e-28	120
MS.gene072017.t1	AT2G31400	28.195	266	170	3	142	386	271	536	8.44e-27	115
MS.gene072017.t1	AT2G31400	23.636	330	250	2	78	406	243	571	4.64e-22	101
MS.gene072017.t1	AT2G31400	27.445	317	195	1	80	361	280	596	2.32e-38	151
MS.gene072017.t1	AT2G31400	26.198	313	207	4	74	365	382	691	3.06e-28	120
MS.gene072017.t1	AT2G31400	28.195	266	170	3	142	386	271	536	7.50e-27	116
MS.gene072017.t1	AT2G31400	23.636	330	250	2	78	406	243	571	4.35e-22	101

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Find 106 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGATGGATATAAGAA+AGG	0.484818	2.4:+75669922	MS.gene072017:CDS
AAAGGTAGTTTGAAAATCCT+TGG	0.456390	2.4:-75673300	None:intergenic
AAATGCACTTGCAAATCTTT+TGG	0.309776	2.4:-75674331	None:intergenic
AACGACCTTCACTCTTCATC+TGG	0.428420	2.4:-75671462	None:intergenic
AACTACGTCATATTTGTCAA+AGG	0.592148	2.4:-75673318	None:intergenic
AAGAGAATTGCTAGCCAAAC+TGG	0.333785	2.4:+75671750	MS.gene072017:CDS
AATGGACGATGTAATTTATG+GGG	0.630965	2.4:+75671381	MS.gene072017:CDS
AGAAAGGACAATCAAGAATG+TGG	0.552216	2.4:+75669938	MS.gene072017:CDS
AGAATTACATACGGTGCTAT+AGG	0.431793	2.4:-75671088	None:intergenic
AGACCGCCATGAAACTCTTT+CGG	0.419802	2.4:+75671028	MS.gene072017:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTAGTTTGAAAATCCT+TGG	-	chr2.4:75673303-75673322	None:intergenic	30.0%
AAATGTTCAAATCTTGGACA+AGG	-	chr2.4:75673661-75673680	None:intergenic	30.0%
AACCAATAATATCTTCTCTG+AGG	-	chr2.4:75673773-75673792	None:intergenic	30.0%
AACTACGTCATATTTGTCAA+AGG	-	chr2.4:75673321-75673340	None:intergenic	30.0%
AATGCTACACTATATCCAAA+AGG	-	chr2.4:75670192-75670211	None:intergenic	30.0%
AATGGACGATGTAATTTATG+GGG	+	chr2.4:75671381-75671400	MS.gene072017:CDS	30.0%
ACAACCCTTGTTCAATTTAA+AGG	-	chr2.4:75671813-75671832	None:intergenic	30.0%
AGATATAGCAAGAGAACAAT+AGG	+	chr2.4:75674097-75674116	MS.gene072017:CDS	30.0%
AGATGCATATGTAGTATTCA+AGG	+	chr2.4:75674174-75674193	MS.gene072017:CDS	30.0%
AGTAAAAGATGGATATCCTA+AGG	+	chr2.4:75671318-75671337	MS.gene072017:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	75669859	75674944	75669859	ID=MS.gene072017
chr2.4	mRNA	75669859	75674944	75669859	ID=MS.gene072017.t1;Parent=MS.gene072017
chr2.4	exon	75669859	75670085	75669859	ID=MS.gene072017.t1.exon1;Parent=MS.gene072017.t1
chr2.4	CDS	75669859	75670085	75669859	ID=cds.MS.gene072017.t1;Parent=MS.gene072017.t1
chr2.4	exon	75671002	75671098	75671002	ID=MS.gene072017.t1.exon2;Parent=MS.gene072017.t1
chr2.4	CDS	75671002	75671098	75671002	ID=cds.MS.gene072017.t1;Parent=MS.gene072017.t1
chr2.4	exon	75671298	75671600	75671298	ID=MS.gene072017.t1.exon3;Parent=MS.gene072017.t1
chr2.4	CDS	75671298	75671600	75671298	ID=cds.MS.gene072017.t1;Parent=MS.gene072017.t1
chr2.4	exon	75671694	75671798	75671694	ID=MS.gene072017.t1.exon4;Parent=MS.gene072017.t1
chr2.4	CDS	75671694	75671798	75671694	ID=cds.MS.gene072017.t1;Parent=MS.gene072017.t1
chr2.4	exon	75671997	75672096	75671997	ID=MS.gene072017.t1.exon5;Parent=MS.gene072017.t1
chr2.4	CDS	75671997	75672096	75671997	ID=cds.MS.gene072017.t1;Parent=MS.gene072017.t1
chr2.4	exon	75673228	75673547	75673228	ID=MS.gene072017.t1.exon6;Parent=MS.gene072017.t1
chr2.4	CDS	75673228	75673547	75673228	ID=cds.MS.gene072017.t1;Parent=MS.gene072017.t1
chr2.4	exon	75674019	75674195	75674019	ID=MS.gene072017.t1.exon7;Parent=MS.gene072017.t1
chr2.4	CDS	75674019	75674195	75674019	ID=cds.MS.gene072017.t1;Parent=MS.gene072017.t1
chr2.4	exon	75674300	75674428	75674300	ID=MS.gene072017.t1.exon8;Parent=MS.gene072017.t1
chr2.4	CDS	75674300	75674428	75674300	ID=cds.MS.gene072017.t1;Parent=MS.gene072017.t1
chr2.4	exon	75674726	75674944	75674726	ID=MS.gene072017.t1.exon9;Parent=MS.gene072017.t1
chr2.4	CDS	75674726	75674944	75674726	ID=cds.MS.gene072017.t1;Parent=MS.gene072017.t1

Gene Sequence

>MS.gene072017

ATGGATCCAAAAAGGGTAGAAGATTTGGTTTATGTGCATACTAATCTTCGACTCTTGTCAAGGAAAGAAGATGGATATAAGAAAGGACAATCAAGAATGTGGGACATTAGTGGAGATGCGCATGAATCGCTTGATGGTGTTGGAATTGAGTTAGCAGAGTTGTCTTTGGATGAACCGGATTTGGAAGCTGTTTTGTATCTTGATGATGGGAATGGAGGAGAGGAGATGTAAACGTTAGTTACTTGTTAGTGTTAACTCTTAGTACTGATGTGTTCTTTTTTGGATATAGTGCTTCTTTTTTGGATCGATATAGTATAGCACTAACAAGTTCCTTTTGGATATAGTGTAGCATTGATGTATAGCGCTCTTTTTGGTATATATTGCGTATGTAATTGACTAATGATCACTCTCTTAATCGTCAATATTATTTATATTTATGTTAATGTGCTACGAGTCTGGTTTCTTGTGTTTGTTAATATATTTGCATATTAAAAAATTGGTTATAATTATATTGTAAATTTAGTTATATAATTTTTTTATTAACGTATCCCAGCCGTATCGTATCTTGATTTTTGAAATTTTTCCGTATCGACGTATCGGTGCAGTATCGTATCCGTATCGTATCTCGTATCCGGGCTTCACAGCTTAAGATTAATTTTTAGATATTTTTAAAAGAGCAAAAACTATTTTGTGTTTGTTTACTGCATTGACAATCACTTTTAAAAGAAAATTAGTTATCACTTATCAAAAATGATTATCTAGAGCAGCTACTCAAAACAACTTCTCATATTAAGCAGTTTTTAGATTTATTTTTCAGATTCTATTTTTTTTTAAATATATGTTACAAACGGACGGAAACTTCTAAAAGTGATAATTTGATTTTAAAAAAGTGAATTTCCACAACAAAAGTTGTAACAAAGGGGCCTCAAAACATTCATACCAAACTCATTTACCATGACTATTGTATTTGCTGCAGCTTTTTTTATGGATGCAAGAGAACAAGAAGCTTGATGTATATTCTTATTCCCATTACATAAAGTTCATGGCCAATAAACTTGATGCTTCCACGATGCTAAAACTGTACAACGACATTCAAGATGAATCGGCCAAGGACAATGTCTATGTATGTAATTCTGTTCTCAGTTGTCTAATCAAGAAAGGCAAGTTTGAGACCGCCATGAAACTCTTTCGGCAGATGAAACATGATGGTCTAGTTCCGGATCTTGTTACCTATAGCACCGTATGTAATTCTTTCCTCCACTGTTTTTGTTCTCTGGTCATTTATACAAATTGAAGCAAAAACTTATAGTTTCTGTCTGATTTTGTTTTCTACTTATATATAACATTCACTTTTTATTTTATTTTTGTATGCACAACTAAATATTTGACTTTGGGATTCAATTATTTATTGCGATCTAATTTTTTGTTCTCATCACCAGCTTATTGCAGGTTGCGTTAAAGTAAAAGATGGATATCCTAAGGCATTGGAGCTAATTCAGGAACTGCAAGACAATAAACTGCGAATGGACGATGTAATTTATGGGGCAATTCTGGCAGTTTGTGCTTCTAATGGTAAATGGGAAGAAGCAGAATACTATTTTAACCAGATGAAGAGTGAAGGTCGTTCACCAAATGTTTACCACTATAGCTCTTTGCTCAATGCTTACTCAGCATGTGGAGACTTCACAAAAGCTGATGCACTGATTCAAGATATGGAATCTGAAGGGTTAGTACCAAACAAGGTTTGTTTTACTTAACTTTCTACAAAATTTAAGACAATTTGTGATGAGTAGTATATCATGCACGTGGCTCAGCAGCTTTATATATAATTGCAGGTCATTTTGACAACCTTGCTGAAGGTATATGTCAGAGGAGGTTTATTTGAGAAGTCAAGAGAATTGCTAGCCAAACTGGAATCCTTGGGCTATGCTCAAGATGAGGTAATTGGTAACCTTTAAATTGAACAAGGGTTGTTTGGCTTTTCTGTATCTGAAACATTATAAAATCATTTCATAGCATTATTCATTCTATGTTAATGCCTAAAGTTTATATCAAATTATAATTATACGTCTTTCTTTTAGCCTTTTCTGTCTTCTCTTTTTTACTGTCTTATTTGACTAATTTGGATCTTTATACAGATGCCATACTGTGTATTGATGGATGGCCTAGCTAAGGCAGGACAAACGCATGAAGCCAAAATAATTTTTGATGAAATGATGAAAAAACATGTCAAGTCTGGTAAGTTGTCATTTGTAGTTTCCCACTACTTTGTCCATTAGGTATATAATACCACCGCAAAAATCTTTATGCAGCACCTAAAGTTTTATGTAAATTTGATCCTCTTGGCATGATTTCAGAGCTTTAATGAGTCATGACTAATTGGTTTGAAGTTCAATTCTTCGCTCCTATATTTTTCATGGTTAAGTTGAATTTTTGCAAACGGTCAATGAGCATGTGCATTGTCTATACTCGGAGGCCGGAGCCAAAGACTCTCGTGTGCAAGATGAAGGCCAGCCTATGGTTTCAATAGCGCACTAAATAGCGCACTATAGTGGAATAACGTAGCAGCGGTAGGGCTTGGCGTGACGCCATCTCCCCACAACCCTCCTTCATCAGTGGCGGTTGTGGCGGTCGGAAATTGCGGCAATTCCACTATCCACTATAGCAGTCTAGACTCACTACAGTTATGACTAAAGGAGATGAGGAATTGGAGGTGGAAGAACAATAGTTTGAATCAAGTGATGAACAAGATGATATTGATGTGGTGGAACTTAGAAGTGAAGATGAGGAAGACGCAGATGTGGAAGCATGATTTTGATTAGTTTTAGAACTTGATTTTGTCATTTTGACGGGAAGTCATTTTAAATACAACGTCAGTTTGATTACATTTAGAACTTATTTTGATGGGAAATGACAAAGTTAATTATAACTATTAAGTATGATTGCCACATTTTGAGTATTTTTGTATGTTATTGAAATTTATGTTTACTTTATACATTGTTTTTTAGTCTTCACAATTTTGGTCATCCCTCTATCCTCTAGCTGTTAGAGACATAGCCATTATTGGCCCTCCACTCCTCTTATCAGCTTAAGCTTTTAGAAAGCTGTCTTGAATAGCTTATGTAATGGAGGTGAATAAGAGTTCTGCAAATATGGTCACATGTTATCCTCATGTTCCTATATTTGTTCCATTGTTTGAATTTCTGCAAGAATCTGTATTGTTGGAGCTGATAATAGATATATCATATCATAATAACTTTTAATTGAGCTTTTTGTTTGTTTTTATTATACGAAGCTTTAGTTCTAGTAACTCTCCAAGTTGGGATATTTAACACGGTAGTAATTTACAAATTTAATTCACACATGCAGATGGCTATGCACACAGTATTATAATATCAGCATTTTGCCGAGCCAAGCTTTTTCAGGAGGCAAAGCAGTTGGCCAAGGATTTTCAAACTACCTTTGACAAATATGACGTAGTTATAATGAATTCAATGCTCTGTGCTTTCTGCAGAGCAGGTGAAATGGAAAGTGTGATGGAAACTCTAAGAAAGATGGATGAATTGGCAATCAGTCCTGATTACAATACCTTCAATATTCTAATCAAATACTTCTGTAGGAAAAACATGTATCTATTAGCTTATCGAACCATGTTGGACATGCATAGTAAAGGCTATCAACCAGCGGAGGTACGCTGTTTTATTGTCGTGCTGATATTGAACTTGTTTTCTGCAGTATGTAACTGTAATACGTCCTTTTAGTTTTATGATTTGTAATATATGGCAACATTTGTTTGCATCCTTGTCCAAGATTTGAACATTTTCATAATATAGATCCTTGTGAATGTCTTGTAATTTCTACATTTATATATCCTTCTGCATATTATTTGATTCATTGTTTTATTATCCTTTCCTCAGAGAAGATATTATTGGTTTTCTTTTAGTGAGCCGTTTACAATCTTACTTGAGTTAAAAGGTTACATTCCTGAAGAAAAGACCATTAAAAGAGTGATATAGTGAAAAAGATTATAAATGTGAAGTTTCACTTGATTTAAAACCGAGAATGCTTCATTTAATAAAGTTTGCTGTGATTTTTTTCTATCTATGATTATCAGTTTATTGACCAAGTAAAAGTTCTAATATGTTCCTCTCTTTTTGTAGGAGCTCTGTTCTTCTTTAATATACCACCTTGGTCAGGAAAATGCTTATTCAGAGGCATTTTCTCTTTACAATATGCTGAGATATAGCAAGAGAACAATAGGCAAGGCACTTCATGAGAAGATTCTGCGTATTCTCCTAGCAGGAAAGCTTTTGAAAGATGCATATGTAGTATTCAAGGTATTATTCTCCTAGCAGTAATTTTTATTTTTATTTAGAAATATATAAATCTTATTTTCTTCTCGTAGCGTTGTGGTTCATCTGATGAATCTGACCGTATTCAGGATAATGCAACATCTATATCTGGCCCCACTACCAAAAGATTTGCAAGTGCATTTATGAAGTCAGGTAACATCAACTTGATCAATGATGTTATGAAGACACTCCATAATTGTGGCTACAAGATTGATCAGGTAATAATAAACTTGACAGTATTTTGCATTTTGAATACTGTTATTAGAATGATAATCAGTTCATAGTATTTCTTTATAATTCATCCACAAGAAATGTTTTATTAGTTTGAAATTCCTTTTGTTTATCTTTATTAAATGGATTTAATCTGATTAAAAAATTTCAAATTAGAACAACTGGTTTGTTTAGTGGCCAACTGTGTCCAAATTGAAATATTTTCTGAAGATTGGAGTTAGGTCTCGGGTATTGTATTAAACTGTTTACTCAAAAATTATTATTTATATTCCACCTTGTTGCAGGGTTTATTTGAGATGGCTGTATCACGCTATTTAGGTCAACCTGAAAAGAAAGACTTGCTTCTACACTTACTACAATGGATGCCAGGTCAAGGTTACGTGGTTAATCCATCAACAAGAAACCTAATCCTCAAGAATTCACACTTATTTGGTCGTCAGCTCATTGCTGAAGTTTTGTCCAAGCAACGAGTTAAGTTAAACGCCCTAAAAATCACTGGATAA

Protein sequence

>MS.gene072017.t1

MDPKRVEDLVYVHTNLRLLSRKEDGYKKGQSRMWDISGDAHESLDGVGIELAELSLDEPDLEAVLYLDDGNGGEEICLIKKGKFETAMKLFRQMKHDGLVPDLVTYSTLIAGCVKVKDGYPKALELIQELQDNKLRMDDVIYGAILAVCASNGKWEEAEYYFNQMKSEGRSPNVYHYSSLLNAYSACGDFTKADALIQDMESEGLVPNKVILTTLLKVYVRGGLFEKSRELLAKLESLGYAQDEMPYCVLMDGLAKAGQTHEAKIIFDEMMKKHVKSDGYAHSIIISAFCRAKLFQEAKQLAKDFQTTFDKYDVVIMNSMLCAFCRAGEMESVMETLRKMDELAISPDYNTFNILIKYFCRKNMYLLAYRTMLDMHSKGYQPAEELCSSLIYHLGQENAYSEAFSLYNMLRYSKRTIGKALHEKILRILLAGKLLKDAYVVFKDNATSISGPTTKRFASAFMKSGNINLINDVMKTLHNCGYKIDQGLFEMAVSRYLGQPEKKDLLLHLLQWMPGQGYVVNPSTRNLILKNSHLFGRQLIAEVLSKQRVKLNALKITG