Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08427.t1 | XP_024626086.1 | 67.3 | 52 | 17 | 0 | 1 | 52 | 9 | 60 | 9.80E-09 | 69.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene08427 | 0.807724 | 4.39E-50 | -1.69E-46 |
| MS.gene049341 | MS.gene08427 | 0.834976 | 2.20E-56 | -1.69E-46 |
| MS.gene049756 | MS.gene08427 | 0.818449 | 1.95E-52 | -1.69E-46 |
| MS.gene049821 | MS.gene08427 | 0.810341 | 1.21E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene08427 | 0.839832 | 1.25E-57 | -1.69E-46 |
| MS.gene050303 | MS.gene08427 | 0.810185 | 1.31E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene08427 | 0.8095 | 1.83E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene08427 | 0.807247 | 5.55E-50 | -1.69E-46 |
| MS.gene050724 | MS.gene08427 | 0.803054 | 4.19E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene08427 | 0.823621 | 1.26E-53 | -1.69E-46 |
| MS.gene050815 | MS.gene08427 | 0.840704 | 7.41E-58 | -1.69E-46 |
| MS.gene051243 | MS.gene08427 | 0.817486 | 3.22E-52 | -1.69E-46 |
| MS.gene051328 | MS.gene08427 | 0.839088 | 1.95E-57 | -1.69E-46 |
| MS.gene05134 | MS.gene08427 | 0.817579 | 3.07E-52 | -1.69E-46 |
| MS.gene051577 | MS.gene08427 | 0.800148 | 1.65E-48 | -1.69E-46 |
| MS.gene051633 | MS.gene08427 | 0.801655 | 8.13E-49 | -1.69E-46 |
| MS.gene051757 | MS.gene08427 | 0.812215 | 4.74E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene08427 | 0.833317 | 5.72E-56 | -1.69E-46 |
| MS.gene052286 | MS.gene08427 | 0.813789 | 2.14E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene08427 | 0.811056 | 8.47E-51 | -1.69E-46 |
| MS.gene052376 | MS.gene08427 | 0.815516 | 8.88E-52 | -1.69E-46 |
| MS.gene052879 | MS.gene08427 | 0.823015 | 1.74E-53 | -1.69E-46 |
| MS.gene052947 | MS.gene08427 | 0.82079 | 5.70E-53 | -1.69E-46 |
| MS.gene053216 | MS.gene08427 | 0.807306 | 5.39E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene08427 | 0.800399 | 1.47E-48 | -1.69E-46 |
| MS.gene055468 | MS.gene08427 | 0.800773 | 1.23E-48 | -1.69E-46 |
| MS.gene055608 | MS.gene08427 | 0.804511 | 2.09E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene08427 | 0.813774 | 2.16E-51 | -1.69E-46 |
| MS.gene056215 | MS.gene08427 | 0.828106 | 1.08E-54 | -1.69E-46 |
| MS.gene056631 | MS.gene08427 | 0.839079 | 1.96E-57 | -1.69E-46 |
| MS.gene056760 | MS.gene08427 | 0.820107 | 8.17E-53 | -1.69E-46 |
| MS.gene057057 | MS.gene08427 | 0.804038 | 2.62E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene08427 | 0.816441 | 5.52E-52 | -1.69E-46 |
| MS.gene057140 | MS.gene08427 | 0.819462 | 1.15E-52 | -1.69E-46 |
| MS.gene057234 | MS.gene08427 | 0.811246 | 7.71E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene08427 | 0.816894 | 4.37E-52 | -1.69E-46 |
| MS.gene05795 | MS.gene08427 | 0.811835 | 5.74E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene08427 | 0.821237 | 4.49E-53 | -1.69E-46 |
| MS.gene058084 | MS.gene08427 | 0.832423 | 9.54E-56 | -1.69E-46 |
| MS.gene058238 | MS.gene08427 | 0.840862 | 6.73E-58 | -1.69E-46 |
| MS.gene058906 | MS.gene08427 | 0.844262 | 8.43E-59 | -1.69E-46 |
| MS.gene059317 | MS.gene08427 | 0.816361 | 5.75E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene08427 | 0.810117 | 1.35E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene08427 | 0.800505 | 1.40E-48 | -1.69E-46 |
| MS.gene06001 | MS.gene08427 | 0.83386 | 4.18E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene08427 | 0.846052 | 2.77E-59 | -1.69E-46 |
| MS.gene060572 | MS.gene08427 | 0.802267 | 6.08E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene08427 | 0.828284 | 9.79E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene08427 | 0.813591 | 2.37E-51 | -1.69E-46 |
| MS.gene060917 | MS.gene08427 | 0.801021 | 1.10E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTGCACCGTTAAGAAAA+AGG | 0.287608 | 4.2:+14318048 | MS.gene08427:CDS |
| TGTACCTCTGTGGAACAGTT+TGG | 0.321117 | 4.2:-14316210 | None:intergenic |
| TCCTTTACTTGCTGAAATGA+TGG | 0.374631 | 4.2:+14316352 | MS.gene08427:CDS |
| GTACCTCTGTGGAACAGTTT+GGG | 0.391331 | 4.2:-14316209 | None:intergenic |
| TAACGGTGCAGCAGTGTCTC+TGG | 0.427524 | 4.2:-14318039 | None:intergenic |
| TGCAGCAGTGTCTCTGGAAT+CGG | 0.454691 | 4.2:-14318033 | None:intergenic |
| AATTAATTTGAACTCAATCA+AGG | 0.455044 | 4.2:+14316382 | MS.gene08427:CDS |
| CCTTTACTTGCTGAAATGAT+GGG | 0.538147 | 4.2:+14316353 | MS.gene08427:CDS |
| CCCATCATTTCAGCAAGTAA+AGG | 0.541167 | 4.2:-14316353 | None:intergenic |
| ACGAAAACTCATCGAGGAGA+AGG | 0.547378 | 4.2:+14318004 | MS.gene08427:CDS |
| TACATCACTATCACAATAGC+TGG | 0.549893 | 4.2:-14316166 | None:intergenic |
| AGCTATTGTGATAGTGATGT+AGG | 0.582124 | 4.2:+14316168 | MS.gene08427:CDS |
| AGTGATGTAGGAGAGTTCAC+TGG | 0.605602 | 4.2:+14316180 | MS.gene08427:CDS |
| AAGGGATTATTGTACCTCTG+TGG | 0.666642 | 4.2:-14316220 | None:intergenic |
| GGATGCAGTTATGAATCTAG+AGG | 0.670936 | 4.2:+14316143 | None:intergenic |
| TAACCCAAACTGTTCCACAG+AGG | 0.736648 | 4.2:+14316206 | MS.gene08427:CDS |
| GGTTGAACGAAAACTCATCG+AGG | 0.759935 | 4.2:+14317998 | MS.gene08427:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAAATGAAATTGA+GGG | - | chr4.2:14317939-14317958 | None:intergenic | 10.0% |
| !! | AATCTAAAAATTAACAAAAT+AGG | + | chr4.2:14317575-14317594 | MS.gene08427:intron | 10.0% |
| !! | AATGTGTTAAATTAAAAATA+AGG | + | chr4.2:14317545-14317564 | MS.gene08427:intron | 10.0% |
| !! | ATTAAGTAAATATAATCTTA+GGG | - | chr4.2:14316850-14316869 | None:intergenic | 10.0% |
| !! | GAAAAAATAAAAATAAAAAG+TGG | + | chr4.2:14317890-14317909 | MS.gene08427:intron | 10.0% |
| !! | TAATAAATAAAATGAAATTG+AGG | - | chr4.2:14317940-14317959 | None:intergenic | 10.0% |
| !!! | ACAATTCTTTTATTTTATAT+GGG | + | chr4.2:14317362-14317381 | MS.gene08427:intron | 10.0% |
| !!! | TTTTGTTAATTTTTAGATTT+TGG | - | chr4.2:14317574-14317593 | None:intergenic | 10.0% |
| !! | CATTAAGTAAATATAATCTT+AGG | - | chr4.2:14316851-14316870 | None:intergenic | 15.0% |
| !!! | AAAACAATAATTTGTTTCTT+AGG | - | chr4.2:14317713-14317732 | None:intergenic | 15.0% |
| !!! | AAACAATAATTTGTTTCTTA+GGG | - | chr4.2:14317712-14317731 | None:intergenic | 15.0% |
| !!! | ACTTATTTTACTTAAATCTT+AGG | - | chr4.2:14317622-14317641 | None:intergenic | 15.0% |
| !!! | CAATTCTTTTATTTTATATG+GGG | + | chr4.2:14317363-14317382 | MS.gene08427:intron | 15.0% |
| !!! | GACAATTCTTTTATTTTATA+TGG | + | chr4.2:14317361-14317380 | MS.gene08427:intron | 15.0% |
| !!! | GACTGAATTTTATATTAAAA+TGG | + | chr4.2:14316870-14316889 | MS.gene08427:intron | 15.0% |
| !!! | TATGTAATTTCAAGTATTAT+GGG | + | chr4.2:14316992-14317011 | MS.gene08427:intron | 15.0% |
| !!! | TTAAATTACTATTGTTTTAG+TGG | + | chr4.2:14317291-14317310 | MS.gene08427:intron | 15.0% |
| !!! | TTATGTAATTTCAAGTATTA+TGG | + | chr4.2:14316991-14317010 | MS.gene08427:intron | 15.0% |
| !! | ATTTCTTCAATTCTATTGAA+TGG | + | chr4.2:14316778-14316797 | MS.gene08427:intron | 20.0% |
| !! | CTAAAAATTAACAAAATAGG+AGG | + | chr4.2:14317578-14317597 | MS.gene08427:intron | 20.0% |
| !! | GAATTCTACATAATTTACAT+CGG | - | chr4.2:14316563-14316582 | None:intergenic | 20.0% |
| !! | TTTGTGATATTAATCAATGA+TGG | + | chr4.2:14317339-14317358 | MS.gene08427:intron | 20.0% |
| !!! | AACAATAATTTGTTTCTTAG+GGG | - | chr4.2:14317711-14317730 | None:intergenic | 20.0% |
| !!! | AATTAATTTGAACTCAATCA+AGG | + | chr4.2:14316382-14316401 | MS.gene08427:CDS | 20.0% |
| !!! | ACAAATAAAAGCAAGATTTT+TGG | - | chr4.2:14317324-14317343 | None:intergenic | 20.0% |
| !!! | GCAGATTATTGATTTTAATT+TGG | + | chr4.2:14316319-14316338 | MS.gene08427:intron | 20.0% |
| !!! | TATTGATTTTAATTTGGATG+TGG | + | chr4.2:14316325-14316344 | MS.gene08427:CDS | 20.0% |
| !!! | TCTAAAGGTTTCTTATTTTA+TGG | + | chr4.2:14316750-14316769 | MS.gene08427:intron | 20.0% |
| !!! | TTTTGAACAAACCAAAATAA+AGG | - | chr4.2:14317525-14317544 | None:intergenic | 20.0% |
| ! | AAAAAAAGTAAAACGAGAAG+AGG | + | chr4.2:14317868-14317887 | MS.gene08427:intron | 25.0% |
| ! | AATGTGTTACCAAACAATAA+GGG | - | chr4.2:14316241-14316260 | None:intergenic | 25.0% |
| ! | ATTCTAGATGACTGTAATTA+CGG | + | chr4.2:14316579-14316598 | MS.gene08427:intron | 25.0% |
| ! | TACAATAATCCCTTATTGTT+TGG | + | chr4.2:14316229-14316248 | MS.gene08427:intron | 25.0% |
| ! | TATTGTATGGATGACTTATT+TGG | + | chr4.2:14317202-14317221 | MS.gene08427:intron | 25.0% |
| ! | TTAAAAAACCTTGTCATGAA+TGG | + | chr4.2:14316824-14316843 | MS.gene08427:intron | 25.0% |
| ! | TTGATTTCAATGAAATGTGT+TGG | + | chr4.2:14316265-14316284 | MS.gene08427:intron | 25.0% |
| ! | TTGTTTATAGGGAAAAATCA+TGG | + | chr4.2:14316903-14316922 | MS.gene08427:intron | 25.0% |
| !! | ATTTTATGTAGCTTTTGTCT+AGG | + | chr4.2:14317977-14317996 | MS.gene08427:intron | 25.0% |
| !!! | ACAATAATTTGTTTCTTAGG+GGG | - | chr4.2:14317710-14317729 | None:intergenic | 25.0% |
| !!! | GGTTTTTTTTTTCCAAGAAA+AGG | + | chr4.2:14317240-14317259 | MS.gene08427:intron | 25.0% |
| !!! | GTTTATTAGCACCTTTATTT+TGG | + | chr4.2:14317511-14317530 | MS.gene08427:intron | 25.0% |
| ATAGGGAAAAATCATGGTTA+TGG | + | chr4.2:14316909-14316928 | MS.gene08427:intron | 30.0% | |
| ATTTGGAAAGAGAGAAATTC+TGG | + | chr4.2:14317219-14317238 | MS.gene08427:intron | 30.0% | |
| CAATGTGTTACCAAACAATA+AGG | - | chr4.2:14316242-14316261 | None:intergenic | 30.0% | |
| CATTGTGAAGTTTATATTGC+TGG | + | chr4.2:14316602-14316621 | MS.gene08427:intron | 30.0% | |
| TGAATGGCCTAATGAAAAAT+GGG | + | chr4.2:14316794-14316813 | MS.gene08427:intron | 30.0% | |
| TGGTTTCTTAAAATATCAGC+AGG | + | chr4.2:14316929-14316948 | MS.gene08427:intron | 30.0% | |
| TTGAATGGCCTAATGAAAAA+TGG | + | chr4.2:14316793-14316812 | MS.gene08427:intron | 30.0% | |
| ! | GACTCTCAAGTTTGTTTATA+GGG | + | chr4.2:14316892-14316911 | MS.gene08427:intron | 30.0% |
| !! | AAAGGTGCTAATAAACCAAA+AGG | - | chr4.2:14317507-14317526 | None:intergenic | 30.0% |
| !! | GTGTAAGTTTTATGCTAAGA+AGG | + | chr4.2:14317481-14317500 | MS.gene08427:intron | 30.0% |
| AAACCGACAGTTAAAACAGT+CGG | + | chr4.2:14317079-14317098 | MS.gene08427:intron | 35.0% | |
| AAATGATGCAAACACACGAA+AGG | - | chr4.2:14317438-14317457 | None:intergenic | 35.0% | |
| ACAGTTAAAACAGTCGGAAT+TGG | + | chr4.2:14317085-14317104 | MS.gene08427:intron | 35.0% | |
| ACCATAATTGTCATTGCACT+AGG | - | chr4.2:14316653-14316672 | None:intergenic | 35.0% | |
| ATAAGAAACCTTTAGACCCA+TGG | - | chr4.2:14316746-14316765 | None:intergenic | 35.0% | |
| CTTAGCATAAAACTTACACG+AGG | - | chr4.2:14317480-14317499 | None:intergenic | 35.0% | |
| TACATCACTATCACAATAGC+TGG | - | chr4.2:14316169-14316188 | None:intergenic | 35.0% | |
| TTCGGTTTATTCGGTTAAGA+CGG | - | chr4.2:14317052-14317071 | None:intergenic | 35.0% | |
| TTGTTCGGTTTCGGTTTATT+CGG | - | chr4.2:14317061-14317080 | None:intergenic | 35.0% | |
| TTTAACCTTGTTGAACAACC+TGG | - | chr4.2:14317276-14317295 | None:intergenic | 35.0% | |
| ! | AGCTATTGTGATAGTGATGT+AGG | + | chr4.2:14316168-14316187 | MS.gene08427:CDS | 35.0% |
| ! | ATACAATATGCCTTCGAGTT+AGG | - | chr4.2:14317190-14317209 | None:intergenic | 35.0% |
| ! | CCTTTACTTGCTGAAATGAT+GGG | + | chr4.2:14316353-14316372 | MS.gene08427:CDS | 35.0% |
| ! | GGACTCTCAAGTTTGTTTAT+AGG | + | chr4.2:14316891-14316910 | MS.gene08427:intron | 35.0% |
| ! | TAACTCGAAGGCATATTGTA+TGG | + | chr4.2:14317189-14317208 | MS.gene08427:intron | 35.0% |
| ! | TACAATATGCCTTCGAGTTA+GGG | - | chr4.2:14317189-14317208 | None:intergenic | 35.0% |
| ! | TCCTTTACTTGCTGAAATGA+TGG | + | chr4.2:14316352-14316371 | MS.gene08427:CDS | 35.0% |
| ! | TTTATGCTAAGAAGGCCTTT+TGG | + | chr4.2:14317489-14317508 | MS.gene08427:intron | 35.0% |
| !! | ACCTATGCCCATTTTTCATT+AGG | - | chr4.2:14316804-14316823 | None:intergenic | 35.0% |
| !!! | ATTCCGACTGTTTTAACTGT+CGG | - | chr4.2:14317085-14317104 | None:intergenic | 35.0% |
| !!! | GTTTTAACTGTCGGTTTGTT+CGG | - | chr4.2:14317076-14317095 | None:intergenic | 35.0% |
| AAGGGATTATTGTACCTCTG+TGG | - | chr4.2:14316223-14316242 | None:intergenic | 40.0% | |
| ACATAGTGCATACTGCATAC+TGG | - | chr4.2:14316713-14316732 | None:intergenic | 40.0% | |
| CAATTGCTGATGCTACAACA+TGG | - | chr4.2:14316527-14316546 | None:intergenic | 40.0% | |
| CACACGAAAGGTAACAAAAC+TGG | - | chr4.2:14317426-14317445 | None:intergenic | 40.0% | |
| CCCATCATTTCAGCAAGTAA+AGG | - | chr4.2:14316356-14316375 | None:intergenic | 40.0% | |
| GCCTAATGAAAAATGGGCAT+AGG | + | chr4.2:14316800-14316819 | MS.gene08427:intron | 40.0% | |
| GCCTAGTGCAATGACAATTA+TGG | + | chr4.2:14316649-14316668 | MS.gene08427:intron | 40.0% | |
| TTCAAGTATTATGGGCCACA+TGG | + | chr4.2:14317000-14317019 | MS.gene08427:intron | 40.0% | |
| TTCCAAGAAAAGGACGACTT+TGG | + | chr4.2:14317250-14317269 | MS.gene08427:intron | 40.0% | |
| !! | ATTCGGTTAAGACGGATTAC+CGG | - | chr4.2:14317044-14317063 | None:intergenic | 40.0% |
| AACCTTTAGACCCATGGTCA+AGG | - | chr4.2:14316740-14316759 | None:intergenic | 45.0% | |
| ACGAAAACTCATCGAGGAGA+AGG | + | chr4.2:14318004-14318023 | MS.gene08427:CDS | 45.0% | |
| ACTATGTAGAGCCTTGACCA+TGG | + | chr4.2:14316726-14316745 | MS.gene08427:intron | 45.0% | |
| AGTGATGTAGGAGAGTTCAC+TGG | + | chr4.2:14316180-14316199 | MS.gene08427:CDS | 45.0% | |
| CTATGTAGAGCCTTGACCAT+GGG | + | chr4.2:14316727-14316746 | MS.gene08427:intron | 45.0% | |
| CTGCTGCACCGTTAAGAAAA+AGG | + | chr4.2:14318048-14318067 | MS.gene08427:CDS | 45.0% | |
| GACCTCAAGATATCAACCGT+GGG | + | chr4.2:14317107-14317126 | MS.gene08427:intron | 45.0% | |
| GGTTGAACGAAAACTCATCG+AGG | + | chr4.2:14317998-14318017 | MS.gene08427:intron | 45.0% | |
| GTACCTCTGTGGAACAGTTT+GGG | - | chr4.2:14316212-14316231 | None:intergenic | 45.0% | |
| TAACCCAAACTGTTCCACAG+AGG | + | chr4.2:14316206-14316225 | MS.gene08427:CDS | 45.0% | |
| TCTTAGGGCCATTCATGACA+AGG | - | chr4.2:14316835-14316854 | None:intergenic | 45.0% | |
| TGTACCTCTGTGGAACAGTT+TGG | - | chr4.2:14316213-14316232 | None:intergenic | 45.0% | |
| TTTGGCCAGGTTGTTCAACA+AGG | + | chr4.2:14317268-14317287 | MS.gene08427:intron | 45.0% | |
| ! | CTTGGCTGGATTGAGGTTTT+GGG | + | chr4.2:14317130-14317149 | MS.gene08427:intron | 45.0% |
| ! | TGTCTCTTGTTGTGCAGCTA+CGG | + | chr4.2:14316490-14316509 | MS.gene08427:intron | 45.0% |
| !! | ACTGTCGGTTTGTTCGGTTT+CGG | - | chr4.2:14317070-14317089 | None:intergenic | 45.0% |
| !! | TTCGGTTAAGACGGATTACC+GGG | - | chr4.2:14317043-14317062 | None:intergenic | 45.0% |
| !! | AAAAAAGAAAAAAAAAATAA+AGG | - | chr4.2:14317399-14317418 | None:intergenic | 5.0% |
| !! | AAAAAATAAAAATAAAAAGT+GGG | + | chr4.2:14317891-14317910 | MS.gene08427:intron | 5.0% |
| AGAAAAGGACGACTTTGGCC+AGG | + | chr4.2:14317255-14317274 | MS.gene08427:intron | 50.0% | |
| AGCCTTGACCATGGGTCTAA+AGG | + | chr4.2:14316735-14316754 | MS.gene08427:intron | 50.0% | |
| CAAGATATCAACCGTGGGCT+TGG | + | chr4.2:14317112-14317131 | MS.gene08427:intron | 50.0% | |
| GGACCTCAAGATATCAACCG+TGG | + | chr4.2:14317106-14317125 | MS.gene08427:intron | 50.0% | |
| ! | AGCCCACGGTTGATATCTTG+AGG | - | chr4.2:14317112-14317131 | None:intergenic | 50.0% |
| ! | ATATGCCTTCGAGTTAGGGC+TGG | - | chr4.2:14317185-14317204 | None:intergenic | 50.0% |
| ! | GCTTGGCTGGATTGAGGTTT+TGG | + | chr4.2:14317129-14317148 | MS.gene08427:intron | 50.0% |
| ! | GGCCAAAGTCGTCCTTTTCT+TGG | - | chr4.2:14317255-14317274 | None:intergenic | 50.0% |
| ! | TTCGAGTTAGGGCTGGACAT+CGG | - | chr4.2:14317178-14317197 | None:intergenic | 50.0% |
| !! | GGTTGACTCGGTTAACCATG+TGG | - | chr4.2:14317018-14317037 | None:intergenic | 50.0% |
| !! | GTTAAGACGGATTACCGGGT+GGG | - | chr4.2:14317039-14317058 | None:intergenic | 50.0% |
| !! | TGCAGCAGTGTCTCTGGAAT+CGG | - | chr4.2:14318036-14318055 | None:intergenic | 50.0% |
| AGTTAGGGCTGGACATCGGT+CGG | - | chr4.2:14317174-14317193 | None:intergenic | 55.0% | |
| ATATCAACCGTGGGCTTGGC+TGG | + | chr4.2:14317116-14317135 | MS.gene08427:intron | 55.0% | |
| GATGTCCAGCCCTAACTCGA+AGG | + | chr4.2:14317177-14317196 | MS.gene08427:intron | 55.0% | |
| GTTAACCGAGTCAACCCACC+CGG | + | chr4.2:14317022-14317041 | MS.gene08427:intron | 55.0% | |
| TAACGGTGCAGCAGTGTCTC+TGG | - | chr4.2:14318042-14318061 | None:intergenic | 55.0% | |
| !! | GATTACCGGGTGGGTTGACT+CGG | - | chr4.2:14317030-14317049 | None:intergenic | 55.0% |
| !! | GGTTAAGACGGATTACCGGG+TGG | - | chr4.2:14317040-14317059 | None:intergenic | 55.0% |
| CCTCAATCCAGCCAAGCCCA+CGG | - | chr4.2:14317126-14317145 | None:intergenic | 60.0% | |
| ! | GGCTGGACATCGGTCGGTTT+GGG | - | chr4.2:14317168-14317187 | None:intergenic | 60.0% |
| !! | GGACATCGGTCGGTTTGGGT+CGG | - | chr4.2:14317164-14317183 | None:intergenic | 60.0% |
| !! | GGTCGGTTTGGGTCGGTAGT+CGG | - | chr4.2:14317157-14317176 | None:intergenic | 60.0% |
| !! | GTCGGTTTGGGTCGGTAGTC+GGG | - | chr4.2:14317156-14317175 | None:intergenic | 60.0% |
| CCGTGGGCTTGGCTGGATTG+AGG | + | chr4.2:14317123-14317142 | MS.gene08427:intron | 65.0% | |
| GGGCTGGACATCGGTCGGTT+TGG | - | chr4.2:14317169-14317188 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 14316153 | 14318073 | 14316153 | ID=MS.gene08427 |
| chr4.2 | mRNA | 14316153 | 14318073 | 14316153 | ID=MS.gene08427.t1;Parent=MS.gene08427 |
| chr4.2 | exon | 14316153 | 14316227 | 14316153 | ID=MS.gene08427.t1.exon1;Parent=MS.gene08427.t1 |
| chr4.2 | CDS | 14316153 | 14316227 | 14316153 | ID=cds.MS.gene08427.t1;Parent=MS.gene08427.t1 |
| chr4.2 | exon | 14316323 | 14316403 | 14316323 | ID=MS.gene08427.t1.exon2;Parent=MS.gene08427.t1 |
| chr4.2 | CDS | 14316323 | 14316403 | 14316323 | ID=cds.MS.gene08427.t1;Parent=MS.gene08427.t1 |
| chr4.2 | exon | 14316535 | 14316564 | 14316535 | ID=MS.gene08427.t1.exon3;Parent=MS.gene08427.t1 |
| chr4.2 | CDS | 14316535 | 14316564 | 14316535 | ID=cds.MS.gene08427.t1;Parent=MS.gene08427.t1 |
| chr4.2 | exon | 14317999 | 14318073 | 14317999 | ID=MS.gene08427.t1.exon4;Parent=MS.gene08427.t1 |
| chr4.2 | CDS | 14317999 | 14318073 | 14317999 | ID=cds.MS.gene08427.t1;Parent=MS.gene08427.t1 |
| Gene Sequence |
| Protein sequence |
