AlfalfaGEDB | MS.gene08608

M. sativa cultivar XinJiangDaYe / MS.gene08608

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08608.t1	XP_003606419.2	97.6	452	8	2	3	454	47	495	8.50E-253	882.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08608.t1	Q700D2	53.4	322	119	7	9	303	68	385	3.5e-82	307.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08608.t1	G7JPG1	97.6	452	8	2	3	454	47	495	6.1e-253	882.5

TFs/TRs:

Gene ID	Type	Classification
MS.gene08608.t1	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene08608	0.807968	3.90E-50	-1.69E-46
MS.gene049178	MS.gene08608	0.803005	4.29E-49	-1.69E-46
MS.gene04917	MS.gene08608	0.803241	3.83E-49	-1.69E-46
MS.gene049230	MS.gene08608	0.82298	1.77E-53	-1.69E-46
MS.gene049378	MS.gene08608	0.836976	6.82E-57	-1.69E-46
MS.gene049756	MS.gene08608	0.806319	8.72E-50	-1.69E-46
MS.gene049822	MS.gene08608	0.811804	5.83E-51	-1.69E-46
MS.gene04984	MS.gene08608	0.823101	1.66E-53	-1.69E-46
MS.gene04991	MS.gene08608	-0.806165	9.39E-50	-1.69E-46
MS.gene050114	MS.gene08608	0.837564	4.83E-57	-1.69E-46
MS.gene050226	MS.gene08608	0.844258	8.45E-59	-1.69E-46
MS.gene050227	MS.gene08608	0.851962	6.31E-61	-1.69E-46
MS.gene050228	MS.gene08608	0.854898	9.06E-62	-1.69E-46
MS.gene050317	MS.gene08608	0.819581	1.08E-52	-1.69E-46
MS.gene050623	MS.gene08608	-0.886156	4.37E-72	-1.69E-46
MS.gene050642	MS.gene08608	0.814781	1.29E-51	-1.69E-46
MS.gene050719	MS.gene08608	0.813482	2.50E-51	-1.69E-46
MS.gene050721	MS.gene08608	0.81549	9.00E-52	-1.69E-46
MS.gene050724	MS.gene08608	0.809012	2.33E-50	-1.69E-46
MS.gene050762	MS.gene08608	0.830618	2.65E-55	-1.69E-46
MS.gene050763	MS.gene08608	0.831413	1.69E-55	-1.69E-46
MS.gene051245	MS.gene08608	0.805281	1.44E-49	-1.69E-46
MS.gene051757	MS.gene08608	0.807539	4.81E-50	-1.69E-46
MS.gene052176	MS.gene08608	0.81527	1.01E-51	-1.69E-46
MS.gene052302	MS.gene08608	0.802911	4.48E-49	-1.69E-46
MS.gene052376	MS.gene08608	0.818701	1.71E-52	-1.69E-46
MS.gene052434	MS.gene08608	0.814829	1.26E-51	-1.69E-46
MS.gene052856	MS.gene08608	0.83392	4.04E-56	-1.69E-46
MS.gene052858	MS.gene08608	0.82002	8.55E-53	-1.69E-46
MS.gene052860	MS.gene08608	0.814022	1.90E-51	-1.69E-46
MS.gene053381	MS.gene08608	0.824624	7.30E-54	-1.69E-46
MS.gene054379	MS.gene08608	0.833142	6.32E-56	-1.69E-46
MS.gene054930	MS.gene08608	0.814889	1.22E-51	-1.69E-46
MS.gene055222	MS.gene08608	0.803615	3.20E-49	-1.69E-46
MS.gene055441	MS.gene08608	0.809703	1.66E-50	-1.69E-46
MS.gene055701	MS.gene08608	0.800853	1.19E-48	-1.69E-46
MS.gene056400	MS.gene08608	0.817531	3.14E-52	-1.69E-46
MS.gene056552	MS.gene08608	0.82089	5.40E-53	-1.69E-46
MS.gene056760	MS.gene08608	0.803595	3.23E-49	-1.69E-46
MS.gene057140	MS.gene08608	0.816024	6.84E-52	-1.69E-46
MS.gene057665	MS.gene08608	0.813883	2.04E-51	-1.69E-46
MS.gene058084	MS.gene08608	0.805379	1.37E-49	-1.69E-46
MS.gene058182	MS.gene08608	0.825722	4.02E-54	-1.69E-46
MS.gene058399	MS.gene08608	0.827589	1.44E-54	-1.69E-46
MS.gene059249	MS.gene08608	0.829491	5.00E-55	-1.69E-46
MS.gene060084	MS.gene08608	0.845571	3.74E-59	-1.69E-46
MS.gene06010	MS.gene08608	0.809077	2.26E-50	-1.69E-46
MS.gene060297	MS.gene08608	0.817659	2.94E-52	-1.69E-46
MS.gene060683	MS.gene08608	0.824785	6.69E-54	-1.69E-46
MS.gene060685	MS.gene08608	0.818598	1.80E-52	-1.69E-46
MS.gene060802	MS.gene08608	0.812937	3.30E-51	-1.69E-46
MS.gene060803	MS.gene08608	0.828997	6.59E-55	-1.69E-46
MS.gene060869	MS.gene08608	0.84909	4.04E-60	-1.69E-46
MS.gene060870	MS.gene08608	0.840064	1.09E-57	-1.69E-46
MS.gene060998	MS.gene08608	0.817342	3.47E-52	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08608.t1	MTR_4g059870	97.566	452	8	2	3	454	47	495	0.0	919
MS.gene08608.t1	MTR_2g093960	56.069	346	114	11	3	327	41	369	1.79e-119	355
MS.gene08608.t1	MTR_2g099990	42.827	467	191	13	2	452	54	460	2.03e-105	321
MS.gene08608.t1	MTR_8g017210	43.340	473	198	14	2	443	70	503	1.28e-104	321
MS.gene08608.t1	MTR_2g090745	51.327	339	108	10	4	304	17	336	1.40e-100	307
MS.gene08608.t1	MTR_1g094115	41.051	514	203	18	3	453	56	532	9.71e-100	309
MS.gene08608.t1	MTR_1g016010	76.608	171	40	0	2	172	49	219	1.57e-98	303
MS.gene08608.t1	MTR_1g112270	74.854	171	40	2	3	173	53	220	2.21e-96	301
MS.gene08608.t1	MTR_1g112270	75.148	169	39	2	5	173	66	231	6.22e-95	298
MS.gene08608.t1	MTR_2g099990	41.907	451	186	13	18	452	1	391	6.80e-95	292
MS.gene08608.t1	MTR_1g094115	40.000	495	197	18	22	453	58	515	8.51e-87	275
MS.gene08608.t1	MTR_2g017720	77.586	116	20	2	4	119	323	432	1.44e-55	191
MS.gene08608.t1	MTR_3g102000	77.647	85	15	2	32	116	51	131	1.47e-37	137
MS.gene08608.t1	MTR_5g030560	80.000	45	9	0	4	48	16	60	2.36e-21	88.2
MS.gene08608.t1	MTR_1g093095	34.507	142	81	4	17	147	109	249	7.07e-20	90.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08608.t1	AT3G45260	79.882	169	34	0	2	170	47	215	2.04e-105	320
MS.gene08608.t1	AT3G45260	79.882	169	34	0	2	170	47	215	2.04e-105	320
MS.gene08608.t1	AT1G55110	81.707	164	30	0	2	165	71	234	1.80e-102	313
MS.gene08608.t1	AT1G55110	81.707	164	30	0	2	165	71	234	1.80e-102	313
MS.gene08608.t1	AT1G55110	81.707	164	30	0	2	165	71	234	1.80e-102	313
MS.gene08608.t1	AT5G03150	65.217	230	68	6	3	223	62	288	2.13e-101	312
MS.gene08608.t1	AT3G50700	83.871	155	24	1	3	157	43	196	5.54e-101	309
MS.gene08608.t1	AT5G60470	77.576	165	37	0	2	166	52	216	5.56e-101	310
MS.gene08608.t1	AT5G60470	77.576	165	37	0	2	166	48	212	5.62e-101	309
MS.gene08608.t1	AT5G66730	85.161	155	22	1	3	157	41	194	8.99e-101	310
MS.gene08608.t1	AT3G13810	82.500	160	28	0	2	161	59	218	5.78e-100	308
MS.gene08608.t1	AT3G13810	82.500	160	28	0	2	161	73	232	6.32e-100	308
MS.gene08608.t1	AT3G13810	82.500	160	28	0	2	161	78	237	7.06e-100	308
MS.gene08608.t1	AT3G13810	82.500	160	28	0	2	161	78	237	7.06e-100	308
MS.gene08608.t1	AT5G44160	45.023	442	183	15	2	417	45	452	1.56e-99	306
MS.gene08608.t1	AT4G02670	81.529	157	29	0	2	158	61	217	3.10e-99	303
MS.gene08608.t1	AT4G02670	62.946	224	75	4	2	219	63	284	3.26e-99	303
MS.gene08608.t1	AT5G60470	77.160	162	37	0	5	166	46	207	1.45e-98	303
MS.gene08608.t1	AT2G02080	40.340	471	170	13	2	417	62	476	1.53e-98	305
MS.gene08608.t1	AT2G02080	40.340	471	170	13	2	417	62	476	1.53e-98	305
MS.gene08608.t1	AT2G02080	40.340	471	170	13	2	417	62	476	1.53e-98	305
MS.gene08608.t1	AT2G02080	40.340	471	170	13	2	417	62	476	1.53e-98	305
MS.gene08608.t1	AT5G44160	44.773	440	183	15	4	417	8	413	4.60e-98	301
MS.gene08608.t1	AT1G14580	78.750	160	33	1	2	161	61	219	5.32e-98	302
MS.gene08608.t1	AT1G14580	78.750	160	33	1	2	161	61	219	5.32e-98	302
MS.gene08608.t1	AT1G14580	78.750	160	33	1	2	161	75	233	9.40e-98	302
MS.gene08608.t1	AT3G13810	82.166	157	28	0	5	161	68	224	4.65e-97	301
MS.gene08608.t1	AT3G13810	82.166	157	28	0	5	161	82	238	5.56e-97	301
MS.gene08608.t1	AT2G02070	74.545	165	37	2	3	163	61	224	9.41e-94	295
MS.gene08608.t1	AT2G02070	74.545	165	37	2	3	163	61	224	9.41e-94	295
MS.gene08608.t1	AT2G02080	39.910	446	175	13	18	417	1	399	3.00e-89	279
MS.gene08608.t1	AT2G02080	39.910	446	175	13	18	417	1	399	3.00e-89	279
MS.gene08608.t1	AT1G68130	63.265	147	53	1	3	148	50	196	1.26e-68	224
MS.gene08608.t1	AT2G01940	62.416	149	55	1	3	150	53	201	4.39e-68	224
MS.gene08608.t1	AT1G25250	62.838	148	53	2	3	148	42	189	6.91e-68	221
MS.gene08608.t1	AT1G25250	62.585	147	53	2	4	148	20	166	8.29e-67	218
MS.gene08608.t1	AT2G01940	61.333	150	56	2	3	150	53	202	3.56e-64	214
MS.gene08608.t1	AT1G68130	61.818	110	41	1	40	148	1	110	3.62e-45	160
MS.gene08608.t1	AT2G01940	61.607	112	42	1	40	150	1	112	5.88e-45	160
MS.gene08608.t1	AT1G25250	62.162	111	40	2	40	148	1	111	1.13e-44	158
MS.gene08608.t1	AT1G34370	33.714	175	103	4	3	164	14	188	1.08e-24	103
MS.gene08608.t1	AT1G34370	33.714	175	103	4	3	164	224	398	2.94e-24	105
MS.gene08608.t1	AT1G34370	33.714	175	103	4	3	164	224	398	2.94e-24	105
MS.gene08608.t1	AT5G22890	33.987	153	88	4	8	147	202	354	5.25e-23	100
MS.gene08608.t1	AT1G13290	35.484	155	89	6	17	161	95	248	2.78e-20	91.3
MS.gene08608.t1	AT1G51220	32.317	164	93	5	17	172	172	325	5.91e-20	91.3
MS.gene08608.t1	AT1G08290	38.519	135	73	4	22	147	179	312	4.46e-19	88.6
MS.gene08608.t1	AT3G20880	35.252	139	81	4	17	147	250	387	4.88e-19	89.4
MS.gene08608.t1	AT3G57670	35.252	139	81	4	17	147	211	348	1.26e-18	87.8
MS.gene08608.t1	AT1G34790	36.691	139	79	4	17	147	139	276	1.46e-18	86.7

Find 78 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTGAATAAGTTGGTGAATT+TGG	0.142711	4.1:+38916344	MS.gene08608:CDS
CAAGAACTTGGTGAGTTTAA+TGG	0.196940	4.1:+38916615	MS.gene08608:CDS
AGATTGAACTGCATATTTCT+TGG	0.249648	4.1:-38915155	None:intergenic
TCAAATTCAAACAATATGTT+TGG	0.277577	4.1:+38916417	MS.gene08608:CDS
GCCGATGAAGCTGCAAATTC+TGG	0.302791	4.1:-38914943	None:intergenic
TTTAATGGAATGGGATCATT+AGG	0.305018	4.1:+38916630	MS.gene08608:CDS
TGTGAATGGTACAAAGGATT+TGG	0.314338	4.1:+38916443	MS.gene08608:CDS
ACCACTTCTGATTCCGGATC+TGG	0.324071	4.1:-38914845	None:intergenic
CCATGAACCTTCTAGAGCTT+TGG	0.326353	4.1:+38915060	MS.gene08608:CDS
TTCTGATTGAAATTGAAAAC+CGG	0.354457	4.1:-38915887	None:intergenic
CAAATTCAAACAATATGTTT+GGG	0.356792	4.1:+38916418	MS.gene08608:CDS
AATAGACAAATGTATGATTC+AGG	0.359404	4.1:+38916501	MS.gene08608:CDS
CATGAACCTTCTAGAGCTTT+GGG	0.370674	4.1:+38915061	MS.gene08608:CDS
CGAAAATTGCTTAAAGCTGC+TGG	0.371146	4.1:-38915814	None:intergenic
AATCTCTTGTAAAACCCATT+TGG	0.383514	4.1:-38916545	None:intergenic
AGCAATAGCAGCACCAATCT+TGG	0.398971	4.1:+38916372	MS.gene08608:CDS
GTTGTTACTGACAAGTGATT+TGG	0.406986	4.1:-38916177	None:intergenic
CCAAAGCTCTAGAAGGTTCA+TGG	0.410521	4.1:-38915060	None:intergenic
AATAATCTCCAGAGCCAGTA+TGG	0.415643	4.1:+38916654	MS.gene08608:CDS
CTTGGTGAGTTTAATGGAAT+GGG	0.417145	4.1:+38916621	MS.gene08608:CDS
GAAGACTGTGTTATTATCAT+TGG	0.421766	4.1:-38916250	None:intergenic
GCTGCAAATTCTGGTCTCTC+TGG	0.424694	4.1:-38914934	None:intergenic
AATATGCAGTTCAATCTGAT+TGG	0.433651	4.1:+38915161	MS.gene08608:CDS
CCACTTTCACATTGTTAATG+AGG	0.436319	4.1:+38916284	MS.gene08608:CDS
AAATCTCCCAAAGCTCTAGA+AGG	0.438385	4.1:-38915067	None:intergenic
GCTCTTTGCTTCAGCTTCCA+TGG	0.444326	4.1:-38914980	None:intergenic
ATGCAAACAATGGATGTGTT+TGG	0.447388	4.1:+38915994	MS.gene08608:CDS
TAAATACCCACCTCCAAGAT+TGG	0.449616	4.1:-38916385	None:intergenic
GTTGCAGAAAGAATCTCAAA+TGG	0.449863	4.1:+38916206	MS.gene08608:CDS
CAAAGATCAAATTCGAAAGA+AGG	0.450162	4.1:+38915006	MS.gene08608:CDS
TTATGTGAAATCTGCAACAA+GGG	0.451384	4.1:+38914908	MS.gene08608:CDS
TATGTCACCAAAGTCATTGA+TGG	0.456254	4.1:+38914871	MS.gene08608:CDS
TTTGCTTCAGCTTCCATGGT+AGG	0.459248	4.1:-38914976	None:intergenic
CTATCTTTGCCAATGCTACA+TGG	0.460202	4.1:+38916054	MS.gene08608:CDS
ACTTGGTGAGTTTAATGGAA+TGG	0.460921	4.1:+38916620	MS.gene08608:CDS
AGTAGTGTCCACCACCATAC+TGG	0.466451	4.1:-38916668	None:intergenic
GAAAACATGGTGAGAAGAAG+TGG	0.467136	4.1:+38915116	MS.gene08608:CDS
TTCATTACTCCATGTAGCAT+TGG	0.470776	4.1:-38916063	None:intergenic
CCTCATTAACAATGTGAAAG+TGG	0.472482	4.1:-38916284	None:intergenic
TTTGTCGCCATCAATGACTT+TGG	0.484591	4.1:-38914878	None:intergenic
ACCAGAATTTGCAGCTTCAT+CGG	0.488033	4.1:+38914942	MS.gene08608:CDS
ATAGCAACCACTTCTGATTC+CGG	0.489329	4.1:-38914851	None:intergenic
GAAGAAAACAAAGACTTGTC+TGG	0.493905	4.1:+38916096	MS.gene08608:CDS
TGGTGCACACAAGTCTTCTC+AGG	0.500242	4.1:-38915040	None:intergenic
AGAGCTTTGGGAGATTTGAC+AGG	0.501432	4.1:+38915073	MS.gene08608:CDS
AGCAGCACCAATCTTGGAGG+TGG	0.501855	4.1:+38916378	MS.gene08608:CDS
AAAGCTCATAGCAAGATTTG+TGG	0.506969	4.1:+38915184	MS.gene08608:CDS
TGCAGATTTCACATAAGAAA+CGG	0.507472	4.1:-38914901	None:intergenic
GTCCACCACCATACTGGCTC+TGG	0.507855	4.1:-38916662	None:intergenic
GAATAAGTTGGTGAATTTGG+AGG	0.513790	4.1:+38916347	MS.gene08608:CDS
AACATCATCAGAACCACCAT+TGG	0.518482	4.1:+38915924	MS.gene08608:CDS
AATATGTTTGGGATTGTGAA+TGG	0.518566	4.1:+38916429	MS.gene08608:CDS
CTCCAGAGCCAGTATGGTGG+TGG	0.533266	4.1:+38916660	MS.gene08608:CDS
AAATGTATGATTCAGGTTCA+AGG	0.535524	4.1:+38916508	MS.gene08608:CDS
AATAAGTTGGTGAATTTGGA+GGG	0.537676	4.1:+38916348	MS.gene08608:CDS
TTCTGATATAATGCAAACAA+TGG	0.540649	4.1:+38915984	MS.gene08608:CDS
TTGCAGAAAGAATCTCAAAT+GGG	0.545569	4.1:+38916207	MS.gene08608:CDS
TACAAAGGATTTGGAACATG+TGG	0.546663	4.1:+38916452	MS.gene08608:CDS
CTTATGTGAAATCTGCAACA+AGG	0.550563	4.1:+38914907	MS.gene08608:CDS
CACATGAATGAATCCAGATC+CGG	0.553014	4.1:+38914832	None:intergenic
ACATCATCAGAACCACCATT+GGG	0.553100	4.1:+38915925	MS.gene08608:CDS
TCTGATTGAAATTGAAAACC+GGG	0.557875	4.1:-38915886	None:intergenic
TTAGTGTAATTTCCCAATGG+TGG	0.567890	4.1:-38915937	None:intergenic
AATAGCAGCACCAATCTTGG+AGG	0.592274	4.1:+38916375	MS.gene08608:CDS
TGGGATTGTGAATGGTACAA+AGG	0.593396	4.1:+38916437	MS.gene08608:CDS
AAGTGAAGAGTTGAATAAGT+TGG	0.597167	4.1:+38916335	MS.gene08608:CDS
AATCTCAAATGGGATCTACA+AGG	0.601252	4.1:+38916217	MS.gene08608:CDS
AGAGAGTACAAATGTGATTG+TGG	0.604424	4.1:+38915211	MS.gene08608:CDS
GGCGAGGACACAACCTACCA+TGG	0.608097	4.1:+38914963	MS.gene08608:CDS
TCCAGATCCGGAATCAGAAG+TGG	0.621390	4.1:+38914844	MS.gene08608:CDS
GCAGCACCAATCTTGGAGGT+GGG	0.638474	4.1:+38916379	MS.gene08608:CDS
AAACATTATAGTAGAAAACA+TGG	0.647572	4.1:+38915103	MS.gene08608:CDS
ATGTTAGTGTAATTTCCCAA+TGG	0.651961	4.1:-38915940	None:intergenic
AATTTGCAGCTTCATCGGCG+AGG	0.683827	4.1:+38914947	MS.gene08608:CDS
AATCTCCAGAGCCAGTATGG+TGG	0.695447	4.1:+38916657	MS.gene08608:CDS
TTATTATAATTCAGCCACTG+TGG	0.703090	4.1:-38916024	None:intergenic
ACAAAGTGCAAAGATAACAA+CGG	0.712713	4.1:+38915789	MS.gene08608:CDS
TGTTTGGATCACAACCACAG+TGG	0.860213	4.1:+38916010	MS.gene08608:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATAAATACATAAATAAAC+TGG	-	chr4.1:38915699-38915718	None:intergenic	10.0%
!!	CTAAAAGAATATAGAAATAT+TGG	+	chr4.1:38915394-38915413	MS.gene08608:intron	15.0%
!!	TATGGAATAAATAATAAATG+AGG	+	chr4.1:38915654-38915673	MS.gene08608:intron	15.0%
!!!	TTTAACTTAATGTATTTAGA+AGG	-	chr4.1:38915588-38915607	None:intergenic	15.0%
!!	AAACATTATAGTAGAAAACA+TGG	+	chr4.1:38915103-38915122	MS.gene08608:CDS	20.0%
!!	AGATAGTAAATATATATACC+TGG	-	chr4.1:38915248-38915267	None:intergenic	20.0%
!!	CAAATTCAAACAATATGTTT+GGG	+	chr4.1:38916418-38916437	MS.gene08608:CDS	20.0%
!!	TCAAAAGAAAAAAACCAAAT+GGG	+	chr4.1:38916531-38916550	MS.gene08608:CDS	20.0%
!!	TCAAATTCAAACAATATGTT+TGG	+	chr4.1:38916417-38916436	MS.gene08608:CDS	20.0%
!!	TTTAAATTGTAGCAATCTAA+AGG	-	chr4.1:38915563-38915582	None:intergenic	20.0%
!!!	ATTATGTTTGTTAACAAATC+AGG	+	chr4.1:38915719-38915738	MS.gene08608:intron	20.0%
!!!	GAAATTCAAATGCTAATTTT+TGG	-	chr4.1:38915439-38915458	None:intergenic	20.0%
!	AATAGACAAATGTATGATTC+AGG	+	chr4.1:38916501-38916520	MS.gene08608:CDS	25.0%
!	CCATTAAAATCGTGAAATTA+AGG	-	chr4.1:38915468-38915487	None:intergenic	25.0%
!	GTCAAAAGAAAAAAACCAAA+TGG	+	chr4.1:38916530-38916549	MS.gene08608:CDS	25.0%
!	TAATAGAAGGAATGTTTGTA+TGG	+	chr4.1:38915636-38915655	MS.gene08608:intron	25.0%
!	TTCTGATATAATGCAAACAA+TGG	+	chr4.1:38915984-38916003	MS.gene08608:CDS	25.0%
!	TTCTGATTGAAATTGAAAAC+CGG	-	chr4.1:38915890-38915909	None:intergenic	25.0%
!!	CCTTAATTTCACGATTTTAA+TGG	+	chr4.1:38915465-38915484	MS.gene08608:intron	25.0%
!!	GTTTTACAAGAGATTTTCTT+GGG	+	chr4.1:38916553-38916572	MS.gene08608:CDS	25.0%
!!	TTTTACAAGAGATTTTCTTG+GGG	+	chr4.1:38916554-38916573	MS.gene08608:CDS	25.0%
!!!	TAATTTCACGATTTTAATGG+CGG	+	chr4.1:38915468-38915487	MS.gene08608:intron	25.0%
	AAAAGTAGTTGTGAGATTGT+TGG	+	chr4.1:38915516-38915535	MS.gene08608:intron	30.0%
	AAAGTAGTTGTGAGATTGTT+GGG	+	chr4.1:38915517-38915536	MS.gene08608:intron	30.0%
	AAGTGAAGAGTTGAATAAGT+TGG	+	chr4.1:38916335-38916354	MS.gene08608:CDS	30.0%
	AATATGCAGTTCAATCTGAT+TGG	+	chr4.1:38915161-38915180	MS.gene08608:CDS	30.0%
	AATCTCTTGTAAAACCCATT+TGG	-	chr4.1:38916548-38916567	None:intergenic	30.0%
	ACAAAGTGCAAAGATAACAA+CGG	+	chr4.1:38915789-38915808	MS.gene08608:CDS	30.0%
	AGATTGAACTGCATATTTCT+TGG	-	chr4.1:38915158-38915177	None:intergenic	30.0%
	ATGTTAGTGTAATTTCCCAA+TGG	-	chr4.1:38915943-38915962	None:intergenic	30.0%
	CAAAGATCAAATTCGAAAGA+AGG	+	chr4.1:38915006-38915025	MS.gene08608:CDS	30.0%
	CATGTGACAGATATAATAGA+AGG	+	chr4.1:38915623-38915642	MS.gene08608:intron	30.0%
	GGAAAAATATGAGGAATTCT+TGG	-	chr4.1:38915868-38915887	None:intergenic	30.0%
	TCTGATTGAAATTGAAAACC+GGG	-	chr4.1:38915889-38915908	None:intergenic	30.0%
	TGCAGATTTCACATAAGAAA+CGG	-	chr4.1:38914904-38914923	None:intergenic	30.0%
	TTATGTGAAATCTGCAACAA+GGG	+	chr4.1:38914908-38914927	MS.gene08608:CDS	30.0%
	TTATTATAATTCAGCCACTG+TGG	-	chr4.1:38916027-38916046	None:intergenic	30.0%
	TTGCAGAAAGAATCTCAAAT+GGG	+	chr4.1:38916207-38916226	MS.gene08608:CDS	30.0%
	TTTAATGGAATGGGATCATT+AGG	+	chr4.1:38916630-38916649	MS.gene08608:CDS	30.0%
!	AAATGTATGATTCAGGTTCA+AGG	+	chr4.1:38916508-38916527	MS.gene08608:CDS	30.0%
!	AATATGTTTGGGATTGTGAA+TGG	+	chr4.1:38916429-38916448	MS.gene08608:CDS	30.0%
!	AGAATTCCTCATATTTTTCC+CGG	+	chr4.1:38915868-38915887	MS.gene08608:CDS	30.0%
!	GAAGACTGTGTTATTATCAT+TGG	-	chr4.1:38916253-38916272	None:intergenic	30.0%
!	GGTTTTACAAGAGATTTTCT+TGG	+	chr4.1:38916552-38916571	MS.gene08608:CDS	30.0%
!	TGTTTCTATCTCAAATCCAA+CGG	-	chr4.1:38915295-38915314	None:intergenic	30.0%
!	TGTTTGTTAACAAATCAGGA+AGG	+	chr4.1:38915723-38915742	MS.gene08608:intron	30.0%
!!	AATAAGTTGGTGAATTTGGA+GGG	+	chr4.1:38916348-38916367	MS.gene08608:CDS	30.0%
!!	GTTGAATAAGTTGGTGAATT+TGG	+	chr4.1:38916344-38916363	MS.gene08608:CDS	30.0%
!!!	CAATCTCACAACTACTTTTT+CGG	-	chr4.1:38915515-38915534	None:intergenic	30.0%
	AAAGCTCATAGCAAGATTTG+TGG	+	chr4.1:38915184-38915203	MS.gene08608:CDS	35.0%
	AAGTAGTTGTGAGATTGTTG+GGG	+	chr4.1:38915518-38915537	MS.gene08608:intron	35.0%
	AATCTCAAATGGGATCTACA+AGG	+	chr4.1:38916217-38916236	MS.gene08608:CDS	35.0%
	ATGCAAACAATGGATGTGTT+TGG	+	chr4.1:38915994-38916013	MS.gene08608:CDS	35.0%
	CCACTTTCACATTGTTAATG+AGG	+	chr4.1:38916284-38916303	MS.gene08608:CDS	35.0%
	CCTCATTAACAATGTGAAAG+TGG	-	chr4.1:38916287-38916306	None:intergenic	35.0%
	CTTATGTGAAATCTGCAACA+AGG	+	chr4.1:38914907-38914926	MS.gene08608:CDS	35.0%
	CTTGGTGAGTTTAATGGAAT+GGG	+	chr4.1:38916621-38916640	MS.gene08608:CDS	35.0%
	GAAGAAAACAAAGACTTGTC+TGG	+	chr4.1:38916096-38916115	MS.gene08608:CDS	35.0%
	GTTGCAGAAAGAATCTCAAA+TGG	+	chr4.1:38916206-38916225	MS.gene08608:CDS	35.0%
	GTTGTTACTGACAAGTGATT+TGG	-	chr4.1:38916180-38916199	None:intergenic	35.0%
	GTTTCTATCTCAAATCCAAC+GGG	-	chr4.1:38915294-38915313	None:intergenic	35.0%
	TATGTCACCAAAGTCATTGA+TGG	+	chr4.1:38914871-38914890	MS.gene08608:CDS	35.0%
	TGAAAACCGGGAAAAATATG+AGG	-	chr4.1:38915877-38915896	None:intergenic	35.0%
	TGTGAATGGTACAAAGGATT+TGG	+	chr4.1:38916443-38916462	MS.gene08608:CDS	35.0%
	TTAGTGTAATTTCCCAATGG+TGG	-	chr4.1:38915940-38915959	None:intergenic	35.0%
	TTCATTACTCCATGTAGCAT+TGG	-	chr4.1:38916066-38916085	None:intergenic	35.0%
!	ACTTGGTGAGTTTAATGGAA+TGG	+	chr4.1:38916620-38916639	MS.gene08608:CDS	35.0%
!	AGAGAGTACAAATGTGATTG+TGG	+	chr4.1:38915211-38915230	MS.gene08608:CDS	35.0%
!	CAAGAACTTGGTGAGTTTAA+TGG	+	chr4.1:38916615-38916634	MS.gene08608:CDS	35.0%
!	TACAAAGGATTTGGAACATG+TGG	+	chr4.1:38916452-38916471	MS.gene08608:CDS	35.0%
!!	GAATAAGTTGGTGAATTTGG+AGG	+	chr4.1:38916347-38916366	MS.gene08608:CDS	35.0%
!!!	AACTACTTTTTCGGTTGCAT+TGG	-	chr4.1:38915506-38915525	None:intergenic	35.0%
!!!	CAGCAGCTTTAAGCAATTTT+CGG	+	chr4.1:38915815-38915834	MS.gene08608:CDS	35.0%
	AACATCATCAGAACCACCAT+TGG	+	chr4.1:38915924-38915943	MS.gene08608:CDS	40.0%
	AATAATCTCCAGAGCCAGTA+TGG	+	chr4.1:38916654-38916673	MS.gene08608:CDS	40.0%
	ACATCATCAGAACCACCATT+GGG	+	chr4.1:38915925-38915944	MS.gene08608:CDS	40.0%
	ACCAGAATTTGCAGCTTCAT+CGG	+	chr4.1:38914942-38914961	MS.gene08608:CDS	40.0%
	AGTAGTTGTGAGATTGTTGG+GGG	+	chr4.1:38915519-38915538	MS.gene08608:intron	40.0%
	ATAGCAACCACTTCTGATTC+CGG	-	chr4.1:38914854-38914873	None:intergenic	40.0%
	CCAAGTTCTTGCTGCAAAAA+AGG	-	chr4.1:38916606-38916625	None:intergenic	40.0%
	CGAAAATTGCTTAAAGCTGC+TGG	-	chr4.1:38915817-38915836	None:intergenic	40.0%
	CTATCTTTGCCAATGCTACA+TGG	+	chr4.1:38916054-38916073	MS.gene08608:CDS	40.0%
	GAAAACATGGTGAGAAGAAG+TGG	+	chr4.1:38915116-38915135	MS.gene08608:CDS	40.0%
	TAAATACCCACCTCCAAGAT+TGG	-	chr4.1:38916388-38916407	None:intergenic	40.0%
	TCAGTAGTGGCTGCAATATA+TGG	+	chr4.1:38915346-38915365	MS.gene08608:intron	40.0%
	TGGGATTGTGAATGGTACAA+AGG	+	chr4.1:38916437-38916456	MS.gene08608:CDS	40.0%
	TTTGTCGCCATCAATGACTT+TGG	-	chr4.1:38914881-38914900	None:intergenic	40.0%
!	ACAAGAGATTTTCTTGGGGT+TGG	+	chr4.1:38916558-38916577	MS.gene08608:CDS	40.0%
!	ATTGTGGCACAATTTTCTCC+AGG	+	chr4.1:38915227-38915246	MS.gene08608:CDS	40.0%
!!	AAATCTCCCAAAGCTCTAGA+AGG	-	chr4.1:38915070-38915089	None:intergenic	40.0%
!!	CATGAACCTTCTAGAGCTTT+GGG	+	chr4.1:38915061-38915080	MS.gene08608:CDS	40.0%
!!!	CCTTTTTTGCAGCAAGAACT+TGG	+	chr4.1:38916603-38916622	MS.gene08608:CDS	40.0%
	AATAGCAGCACCAATCTTGG+AGG	+	chr4.1:38916375-38916394	MS.gene08608:CDS	45.0%
	AGCAATAGCAGCACCAATCT+TGG	+	chr4.1:38916372-38916391	MS.gene08608:CDS	45.0%
	CAGATCCAATGACTCAGTAG+TGG	+	chr4.1:38915333-38915352	MS.gene08608:intron	45.0%
	GTAGTTGTGAGATTGTTGGG+GGG	+	chr4.1:38915520-38915539	MS.gene08608:intron	45.0%
	TGTTTGGATCACAACCACAG+TGG	+	chr4.1:38916010-38916029	MS.gene08608:CDS	45.0%
	TTTAATGGCGGTTGCAATCG+CGG	+	chr4.1:38915480-38915499	MS.gene08608:intron	45.0%
	TTTGCTTCAGCTTCCATGGT+AGG	-	chr4.1:38914979-38914998	None:intergenic	45.0%
!!	AGAGCTTTGGGAGATTTGAC+AGG	+	chr4.1:38915073-38915092	MS.gene08608:CDS	45.0%
!!	CCAAAGCTCTAGAAGGTTCA+TGG	-	chr4.1:38915063-38915082	None:intergenic	45.0%
!!	CCATGAACCTTCTAGAGCTT+TGG	+	chr4.1:38915060-38915079	MS.gene08608:CDS	45.0%
!!!	GGAACATGTGGTTTTGTCTG+TGG	+	chr4.1:38916464-38916483	MS.gene08608:CDS	45.0%
!!	ATTAAGTTAAATTAATTTAA+TGG	+	chr4.1:38915597-38915616	MS.gene08608:intron	5.0%
	AATCTCCAGAGCCAGTATGG+TGG	+	chr4.1:38916657-38916676	MS.gene08608:CDS	50.0%
	AATTTGCAGCTTCATCGGCG+AGG	+	chr4.1:38914947-38914966	MS.gene08608:CDS	50.0%
	ACCACTTCTGATTCCGGATC+TGG	-	chr4.1:38914848-38914867	None:intergenic	50.0%
	AGTAGTGTCCACCACCATAC+TGG	-	chr4.1:38916671-38916690	None:intergenic	50.0%
	GCCGATGAAGCTGCAAATTC+TGG	-	chr4.1:38914946-38914965	None:intergenic	50.0%
	GCTCTTTGCTTCAGCTTCCA+TGG	-	chr4.1:38914983-38915002	None:intergenic	50.0%
	GCTGCAAATTCTGGTCTCTC+TGG	-	chr4.1:38914937-38914956	None:intergenic	50.0%
	TCCAGATCCGGAATCAGAAG+TGG	+	chr4.1:38914844-38914863	MS.gene08608:CDS	50.0%
	TGCAGCCACTACTGAGTCAT+TGG	-	chr4.1:38915341-38915360	None:intergenic	50.0%
	TGGTGCACACAAGTCTTCTC+AGG	-	chr4.1:38915043-38915062	None:intergenic	50.0%
	TTGTGAGATTGTTGGGGGGA+GGG	+	chr4.1:38915524-38915543	MS.gene08608:intron	50.0%
	AGCAGCACCAATCTTGGAGG+TGG	+	chr4.1:38916378-38916397	MS.gene08608:CDS	55.0%
	CGGGTTTGCAGTGACTGCAA+TGG	-	chr4.1:38915275-38915294	None:intergenic	55.0%
	GCAGCACCAATCTTGGAGGT+GGG	+	chr4.1:38916379-38916398	MS.gene08608:CDS	55.0%
	GTTGTGAGATTGTTGGGGGG+AGG	+	chr4.1:38915523-38915542	MS.gene08608:intron	55.0%
	TGCAGTCACTGCAAACCCGT+TGG	+	chr4.1:38915276-38915295	MS.gene08608:intron	55.0%
	CTCCAGAGCCAGTATGGTGG+TGG	+	chr4.1:38916660-38916679	MS.gene08608:CDS	60.0%
	GGCGAGGACACAACCTACCA+TGG	+	chr4.1:38914963-38914982	MS.gene08608:CDS	60.0%
!!	GTCCACCACCATACTGGCTC+TGG	-	chr4.1:38916665-38916684	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	38914839	38916695	38914839	ID=MS.gene08608
chr4.1	mRNA	38914839	38916695	38914839	ID=MS.gene08608.t1;Parent=MS.gene08608
chr4.1	exon	38914839	38915248	38914839	ID=MS.gene08608.t1.exon1;Parent=MS.gene08608.t1
chr4.1	CDS	38914839	38915248	38914839	ID=cds.MS.gene08608.t1;Parent=MS.gene08608.t1
chr4.1	exon	38915741	38916695	38915741	ID=MS.gene08608.t1.exon2;Parent=MS.gene08608.t1
chr4.1	CDS	38915741	38916695	38915741	ID=cds.MS.gene08608.t1;Parent=MS.gene08608.t1

Gene Sequence

>MS.gene08608

ATGAATCCAGATCCGGAATCAGAAGTGGTTGCTATGTCACCAAAGTCATTGATGGCGACAAACCGTTTCTTATGTGAAATCTGCAACAAGGGTTTCCAGAGAGACCAGAATTTGCAGCTTCATCGGCGAGGACACAACCTACCATGGAAGCTGAAGCAAAGAGCAAACAAAGATCAAATTCGAAAGAAGGTTTATGTGTGTCCTGAGAAGACTTGTGTGCACCATGAACCTTCTAGAGCTTTGGGAGATTTGACAGGAATAAAGAAACATTATAGTAGAAAACATGGTGAGAAGAAGTGGAAGTGTGAGAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGCAAGATTTGTGGAACTAGAGAGTACAAATGTGATTGTGGCACAATTTTCTCCAGGTATATATATTTACTATCTTTCGCCATTGCAGTCACTGCAAACCCGTTGGATTTGAGATAGAAACAATTTAGATTTTCTAAACTCAGATCCAATGACTCAGTAGTGGCTGCAATATATGGCAACTATATATAGAAAATCAAAACACTAAAAGAATATAGAAATATTGGAGATCAATTGATTTAAACTCCAAAAATTAGCATTTGAATTTCAAAAGTCCTTAATTTCACGATTTTAATGGCGGTTGCAATCGCGGCCAATGCAACCGAAAAAGTAGTTGTGAGATTGTTGGGGGGAGGGATCATCTAAAAATCCTTTAGATTGCTACAATTTAAAAACCTTCTAAATACATTAAGTTAAATTAATTTAATGGATGCATGTGACAGATATAATAGAAGGAATGTTTGTATGGAATAAATAATAAATGAGGATTGTTAATTGATGTTCAACCAGTTTATTTATGTATTTATTTATTATGTTTGTTAACAAATCAGGAAGGACAGCTTCATAACACATAGAGCTTTTTGTGATGCATTAACTGAACAAAGTGCAAAGATAACAACGGTTCCAGCAGCTTTAAGCAATTTTCGGAACGATCATTTGACGAATACTCAAACTCCAAGAATTCCTCATATTTTTCCCGGTTTTCAATTTCAATCAGAATTTGTTAATTCAGCAACATCATCAGAACCACCATTGGGAAATTACACTAACATTTCTCAACTTCATCAAAATTCTTCTGATATAATGCAAACAATGGATGTGTTTGGATCACAACCACAGTGGCTGAATTATAATAATACTAATCTATCTTTGCCAATGCTACATGGAGTAATGAAACAAGAACAAGAAGAAAACAAAGACTTGTCTGGTAGTGTAATAAGCTCTTTGTACTTGAGTAGAAGTCAGAATCAGAATCAACAAGAAGCACCAAATCACTTGTCAGTAACAACATCACTGTTGCAGAAAGAATCTCAAATGGGATCTACAAGGACAATAATTACCAATGATAATAACACAGTCTTCAACAATTTGAACCACTTTCACATTGTTAATGAGGTTCAGAAATTTTATAACAAGCAATGTGAAAGTGAAGAGTTGAATAAGTTGGTGAATTTGGAGGGAAGCAATAGCAGCACCAATCTTGGAGGTGGGTATTTATTAAATGATTCAAATTCAAACAATATGTTTGGGATTGTGAATGGTACAAAGGATTTGGAACATGTGGTTTTGTCTGTGGATAAAGAGACAACAAATAGACAAATGTATGATTCAGGTTCAAGGTCAAAAGAAAAAAACCAAATGGGTTTTACAAGAGATTTTCTTGGGGTTGGAGAAGATGTCTCAATGAGTAGACCTTTTTTGCAGCAAGAACTTGGTGAGTTTAATGGAATGGGATCATTAGGAAATAATCTCCAGAGCCAGTATGGTGGTGGACACTACTGCTAG

Protein sequence

>MS.gene08608.t1

MNPDPESEVVAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKDQIRKKVYVCPEKTCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALTEQSAKITTVPAALSNFRNDHLTNTQTPRIPHIFPGFQFQSEFVNSATSSEPPLGNYTNISQLHQNSSDIMQTMDVFGSQPQWLNYNNTNLSLPMLHGVMKQEQEENKDLSGSVISSLYLSRSQNQNQQEAPNHLSVTTSLLQKESQMGSTRTIITNDNNTVFNNLNHFHIVNEVQKFYNKQCESEELNKLVNLEGSNSSTNLGGGYLLNDSNSNNMFGIVNGTKDLEHVVLSVDKETTNRQMYDSGSRSKEKNQMGFTRDFLGVGEDVSMSRPFLQQELGEFNGMGSLGNNLQSQYGGGHYC