Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09069.t1 | XP_003629744.1 | 92.6 | 352 | 25 | 1 | 1 | 351 | 1 | 352 | 8.50E-152 | 546.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09069.t1 | F4JLC1 | 65.9 | 273 | 70 | 3 | 73 | 343 | 72 | 323 | 1.2e-90 | 334.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09069.t1 | G7LIP5 | 92.6 | 352 | 25 | 1 | 1 | 351 | 1 | 352 | 6.1e-152 | 546.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene09069 | 0.803283 | 3.75E-49 | -1.69E-46 |
| MS.gene049153 | MS.gene09069 | 0.811198 | 7.89E-51 | -1.69E-46 |
| MS.gene049297 | MS.gene09069 | 0.844542 | 7.09E-59 | -1.69E-46 |
| MS.gene049378 | MS.gene09069 | 0.818172 | 2.25E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene09069 | 0.812006 | 5.27E-51 | -1.69E-46 |
| MS.gene049910 | MS.gene09069 | 0.803425 | 3.51E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene09069 | 0.835497 | 1.62E-56 | -1.69E-46 |
| MS.gene050227 | MS.gene09069 | 0.866109 | 3.63E-65 | -1.69E-46 |
| MS.gene050228 | MS.gene09069 | 0.846363 | 2.28E-59 | -1.69E-46 |
| MS.gene050330 | MS.gene09069 | -0.8334 | 5.45E-56 | -1.69E-46 |
| MS.gene050558 | MS.gene09069 | 0.870966 | 9.79E-67 | -1.69E-46 |
| MS.gene050560 | MS.gene09069 | 0.809431 | 1.90E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene09069 | -0.83386 | 4.18E-56 | -1.69E-46 |
| MS.gene050642 | MS.gene09069 | 0.856738 | 2.63E-62 | -1.69E-46 |
| MS.gene050787 | MS.gene09069 | 0.810751 | 9.87E-51 | -1.69E-46 |
| MS.gene050820 | MS.gene09069 | 0.846614 | 1.94E-59 | -1.69E-46 |
| MS.gene051257 | MS.gene09069 | 0.82504 | 5.82E-54 | -1.69E-46 |
| MS.gene051663 | MS.gene09069 | 0.801777 | 7.67E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene09069 | 0.851884 | 6.63E-61 | -1.69E-46 |
| MS.gene051983 | MS.gene09069 | 0.859108 | 5.20E-63 | -1.69E-46 |
| MS.gene052011 | MS.gene09069 | -0.813128 | 2.99E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene09069 | 0.804718 | 1.89E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene09069 | 0.836076 | 1.16E-56 | -1.69E-46 |
| MS.gene052253 | MS.gene09069 | 0.802015 | 6.85E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene09069 | -0.803723 | 3.04E-49 | -1.69E-46 |
| MS.gene052389 | MS.gene09069 | 0.813431 | 2.57E-51 | -1.69E-46 |
| MS.gene052600 | MS.gene09069 | 0.806631 | 7.49E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene09069 | 0.868061 | 8.64E-66 | -1.69E-46 |
| MS.gene054183 | MS.gene09069 | 0.809703 | 1.66E-50 | -1.69E-46 |
| MS.gene05432 | MS.gene09069 | 0.805543 | 1.27E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene09069 | 0.800318 | 1.52E-48 | -1.69E-46 |
| MS.gene054473 | MS.gene09069 | 0.815183 | 1.05E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene09069 | 0.809897 | 1.51E-50 | -1.69E-46 |
| MS.gene054942 | MS.gene09069 | 0.841724 | 3.99E-58 | -1.69E-46 |
| MS.gene054983 | MS.gene09069 | 0.860364 | 2.17E-63 | -1.69E-46 |
| MS.gene055358 | MS.gene09069 | 0.811681 | 6.20E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene09069 | 0.800008 | 1.76E-48 | -1.69E-46 |
| MS.gene055428 | MS.gene09069 | 0.805084 | 1.58E-49 | -1.69E-46 |
| MS.gene056875 | MS.gene09069 | 0.827964 | 1.17E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene09069 | 0.854399 | 1.26E-61 | -1.69E-46 |
| MS.gene057121 | MS.gene09069 | 0.844604 | 6.82E-59 | -1.69E-46 |
| MS.gene057245 | MS.gene09069 | 0.816078 | 6.66E-52 | -1.69E-46 |
| MS.gene057260 | MS.gene09069 | 0.806838 | 6.77E-50 | -1.69E-46 |
| MS.gene057639 | MS.gene09069 | 0.809335 | 1.99E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene09069 | 0.811707 | 6.12E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene09069 | 0.810503 | 1.12E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene09069 | 0.817764 | 2.78E-52 | -1.69E-46 |
| MS.gene058139 | MS.gene09069 | 0.814651 | 1.38E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene09069 | 0.820373 | 7.10E-53 | -1.69E-46 |
| MS.gene058749 | MS.gene09069 | 0.800235 | 1.59E-48 | -1.69E-46 |
| MS.gene059247 | MS.gene09069 | 0.830546 | 2.76E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene09069 | 0.839583 | 1.45E-57 | -1.69E-46 |
| MS.gene061040 | MS.gene09069 | -0.847158 | 1.38E-59 | -1.69E-46 |
| MS.gene061049 | MS.gene09069 | 0.821892 | 3.17E-53 | -1.69E-46 |
| MS.gene061114 | MS.gene09069 | -0.832649 | 8.38E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09069.t1 | MTR_8g086060 | 96.307 | 352 | 12 | 1 | 1 | 351 | 1 | 352 | 0.0 | 696 |
| MS.gene09069.t1 | MTR_1g115235 | 34.483 | 203 | 117 | 5 | 155 | 344 | 120 | 319 | 5.45e-30 | 117 |
| MS.gene09069.t1 | MTR_1g115235 | 32.955 | 176 | 102 | 5 | 155 | 317 | 120 | 292 | 4.33e-21 | 92.4 |
| MS.gene09069.t1 | MTR_1g115235 | 33.571 | 140 | 77 | 5 | 155 | 281 | 120 | 256 | 2.27e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09069.t1 | AT4G28590 | 54.545 | 330 | 111 | 6 | 25 | 343 | 22 | 323 | 2.95e-117 | 343 |
| MS.gene09069.t1 | AT2G31840 | 41.436 | 181 | 89 | 5 | 173 | 339 | 152 | 329 | 9.71e-33 | 125 |
| MS.gene09069.t1 | AT2G31840 | 41.436 | 181 | 89 | 5 | 173 | 339 | 152 | 329 | 9.71e-33 | 125 |
Find 85 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGACATTCTCGAACTTTC+AGG | 0.153863 | 4.4:+13993354 | None:intergenic |
| TCTCCTACAACATTCTTAAT+TGG | 0.208516 | 4.4:+13994530 | None:intergenic |
| GTTTCTATCATCCTTATTAA+TGG | 0.262268 | 4.4:+13994904 | None:intergenic |
| AAGGGGAGACTGAGGATAAC+TGG | 0.300402 | 4.4:-13994484 | MS.gene09069:CDS |
| CGACCGCGCCTTGGCTTCCT+TGG | 0.304224 | 4.4:+13994854 | None:intergenic |
| CTATCATCATTGCTGCGTTT+TGG | 0.305949 | 4.4:+13994686 | None:intergenic |
| AAGAATCTCGAATGAGAAAA+AGG | 0.321782 | 4.4:+13995088 | None:intergenic |
| TGTAGGATTAGGTTCGGGTT+CGG | 0.333557 | 4.4:+13994982 | None:intergenic |
| GTAGGATTAGGTTCGGGTTC+GGG | 0.335867 | 4.4:+13994983 | None:intergenic |
| GGCTTCCTTGGAATTGTTGT+TGG | 0.353522 | 4.4:+13994866 | None:intergenic |
| GCAACAAAATGCGGGTGCTT+TGG | 0.363915 | 4.4:-13994762 | MS.gene09069:CDS |
| TCCACAGGGCAAATGATAAC+TGG | 0.371102 | 4.4:-13993742 | MS.gene09069:intron |
| TTTGGATGTAGGATTAGGTT+CGG | 0.375242 | 4.4:+13994976 | None:intergenic |
| ACAGAACATGATATTGATAT+AGG | 0.402346 | 4.4:+13995028 | None:intergenic |
| CATCCAATTAAGAATGTTGT+AGG | 0.407757 | 4.4:-13994533 | MS.gene09069:CDS |
| GGTGCAGGAGATCAATTGTT+TGG | 0.409092 | 4.4:-13994462 | MS.gene09069:CDS |
| AGAGCTGGAGAAAGCAATAA+AGG | 0.432889 | 4.4:-13993708 | MS.gene09069:CDS |
| TGGAGAGAAGGCGGTGATTG+AGG | 0.436030 | 4.4:-13994627 | MS.gene09069:CDS |
| TTGGAGGCATAAGAGCTGTT+TGG | 0.439142 | 4.4:+13995119 | None:intergenic |
| GCCTGCATGGATTGATGATA+AGG | 0.442007 | 4.4:-13993085 | MS.gene09069:CDS |
| GGAAGATGGTGGTGGAGAGA+AGG | 0.455976 | 4.4:-13994639 | MS.gene09069:CDS |
| CCTCGTAGAAACAAAATTTG+AGG | 0.457143 | 4.4:+13993335 | None:intergenic |
| AGGACATTCTCGAACTTTCA+GGG | 0.462386 | 4.4:+13993355 | None:intergenic |
| ATGATGGTGCTGAAATTGAT+TGG | 0.468138 | 4.4:-13994508 | MS.gene09069:CDS |
| AGAAAGCAATAAAGGTGTAC+TGG | 0.471230 | 4.4:-13993700 | MS.gene09069:CDS |
| AAGATGGTGTACAGGGAGAA+AGG | 0.474258 | 4.4:-13993308 | MS.gene09069:intron |
| TGAGGAGGAGGTGGAAGAAG+AGG | 0.474972 | 4.4:-13994660 | MS.gene09069:CDS |
| AGATGGTGTGACCATTAATA+AGG | 0.476275 | 4.4:-13994915 | MS.gene09069:CDS |
| AGAACACGTTTGCTGCAATT+CGG | 0.476704 | 4.4:-13994784 | MS.gene09069:CDS |
| AGAGAGTGAGAGCTGGCCAT+TGG | 0.480727 | 4.4:-13994603 | MS.gene09069:CDS |
| AATGTGATGAGTAGATAAAG+TGG | 0.489173 | 4.4:+13995057 | None:intergenic |
| CTAAAGATCGGTTACCTCCC+AGG | 0.492013 | 4.4:-13993673 | MS.gene09069:CDS |
| TTGGATGTAGGATTAGGTTC+GGG | 0.492104 | 4.4:+13994977 | None:intergenic |
| GAGGGAATAAGATGGTGTAC+AGG | 0.495962 | 4.4:-13993316 | MS.gene09069:CDS |
| CATTGGATACGGATGTCGGG+TGG | 0.496433 | 4.4:-13994586 | MS.gene09069:CDS |
| ACTCAGAACTGCGGATGAGC+TGG | 0.496745 | 4.4:-13993145 | MS.gene09069:CDS |
| GAAGAAGAGGAAGATGGTGG+TGG | 0.502013 | 4.4:-13994647 | MS.gene09069:CDS |
| TGATGGTGCTGAAATTGATT+GGG | 0.506693 | 4.4:-13994507 | MS.gene09069:CDS |
| GCAATTCGGCAACAAAATGC+GGG | 0.507031 | 4.4:-13994770 | MS.gene09069:CDS |
| TGGCCATTGGATACGGATGT+CGG | 0.507521 | 4.4:-13994590 | MS.gene09069:CDS |
| TGAGAGCTGGCCATTGGATA+CGG | 0.507959 | 4.4:-13994597 | MS.gene09069:CDS |
| GGCCATTGGATACGGATGTC+GGG | 0.512837 | 4.4:-13994589 | MS.gene09069:CDS |
| GACTGAGGATAACTGGGTGC+AGG | 0.519180 | 4.4:-13994477 | MS.gene09069:CDS |
| TGATAGTGATGAGGAGGAGG+TGG | 0.520072 | 4.4:-13994669 | MS.gene09069:CDS |
| GGAGATCAATTGTTTGGAGT+GGG | 0.524391 | 4.4:-13994456 | MS.gene09069:CDS |
| CATTAACATCGAGAAAGACT+TGG | 0.524986 | 4.4:-13993384 | MS.gene09069:CDS |
| GTGCTGAAATTGATTGGGAA+GGG | 0.532847 | 4.4:-13994502 | MS.gene09069:CDS |
| AAAAGTTTCCAACGTGGAGA+TGG | 0.538979 | 4.4:-13994932 | MS.gene09069:CDS |
| AAGAATGTTGTAGGAGATGA+TGG | 0.540394 | 4.4:-13994524 | MS.gene09069:CDS |
| TGCTGAAATTGATTGGGAAG+GGG | 0.540914 | 4.4:-13994501 | MS.gene09069:CDS |
| CAACAATTCCAAGGAAGCCA+AGG | 0.541191 | 4.4:-13994862 | MS.gene09069:CDS |
| GAGGTGGAAGAAGAGGAAGA+TGG | 0.541968 | 4.4:-13994653 | MS.gene09069:CDS |
| AGATGGTGGTGGAGAGAAGG+CGG | 0.543685 | 4.4:-13994636 | MS.gene09069:CDS |
| ATTGGATACGGATGTCGGGT+GGG | 0.544540 | 4.4:-13994585 | MS.gene09069:CDS |
| TGCAATTCGGCAACAAAATG+CGG | 0.545718 | 4.4:-13994771 | MS.gene09069:CDS |
| TTGGATACGGATGTCGGGTG+GGG | 0.546849 | 4.4:-13994584 | MS.gene09069:CDS |
| TGATTGGGAAGGGGAGACTG+AGG | 0.550882 | 4.4:-13994492 | MS.gene09069:CDS |
| GTGGAAGAAGAGGAAGATGG+TGG | 0.551552 | 4.4:-13994650 | MS.gene09069:CDS |
| GCCTTATCATCAATCCATGC+AGG | 0.566180 | 4.4:+13993084 | None:intergenic |
| GTTTCTACGAGGGAATAAGA+TGG | 0.569954 | 4.4:-13993324 | MS.gene09069:CDS |
| GAATCATAAAGATATAATGA+AGG | 0.574940 | 4.4:-13994738 | MS.gene09069:CDS |
| TGATGATAGTGATGAGGAGG+AGG | 0.575455 | 4.4:-13994672 | MS.gene09069:CDS |
| AATTTCCAACAACAATTCCA+AGG | 0.578397 | 4.4:-13994871 | MS.gene09069:CDS |
| TTGAGGAAGAGAGTGAGAGC+TGG | 0.578485 | 4.4:-13994610 | MS.gene09069:CDS |
| AGGGGAGACTGAGGATAACT+GGG | 0.579701 | 4.4:-13994483 | MS.gene09069:CDS |
| AGGAGATCAATTGTTTGGAG+TGG | 0.582911 | 4.4:-13994457 | MS.gene09069:CDS |
| CAATTAATAACGTAAATACA+AGG | 0.583174 | 4.4:+13993062 | None:intergenic |
| CACCCGACATCCGTATCCAA+TGG | 0.587765 | 4.4:+13994587 | None:intergenic |
| GGTGCTGAAATTGATTGGGA+AGG | 0.593647 | 4.4:-13994503 | MS.gene09069:CDS |
| ACAATGCAAAGAAGCCTGCA+TGG | 0.600174 | 4.4:-13993098 | MS.gene09069:CDS |
| TAAAGATCGGTTACCTCCCA+GGG | 0.600728 | 4.4:-13993672 | MS.gene09069:intron |
| CAATGATGATAGTGATGAGG+AGG | 0.605683 | 4.4:-13994675 | MS.gene09069:CDS |
| GTACGATTAAAGGACTAGGA+TGG | 0.608020 | 4.4:+13994420 | None:intergenic |
| GATATAATGAAGGACAGTGT+CGG | 0.611630 | 4.4:-13994728 | MS.gene09069:CDS |
| TGTACTGGAGTGCTAAAGAT+CGG | 0.614574 | 4.4:-13993685 | MS.gene09069:CDS |
| AGGGAATAAGATGGTGTACA+GGG | 0.616347 | 4.4:-13993315 | MS.gene09069:CDS |
| ACAAGTACGATTAAAGGACT+AGG | 0.617860 | 4.4:+13994416 | None:intergenic |
| CAGCAATGATGATAGTGATG+AGG | 0.657518 | 4.4:-13994678 | MS.gene09069:CDS |
| ATTCCAAGGAAGCCAAGGCG+CGG | 0.658601 | 4.4:-13994857 | MS.gene09069:CDS |
| GAAATTGACCATACCCTGGG+AGG | 0.666614 | 4.4:+13993659 | None:intergenic |
| AAGGCGCGGTCGTAAAAGTG+AGG | 0.675835 | 4.4:-13994843 | MS.gene09069:CDS |
| TAAGGATGATAGAAACTCTG+AGG | 0.680715 | 4.4:-13994897 | MS.gene09069:CDS |
| TGGTCACACCATCTCCACGT+TGG | 0.708792 | 4.4:+13994924 | None:intergenic |
| CTTTGCAGAACTCAGAACTG+CGG | 0.713652 | 4.4:-13993154 | MS.gene09069:intron |
| AAGGGGAAAAGTTTCCAACG+TGG | 0.792116 | 4.4:-13994938 | MS.gene09069:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTAATTCATATTCTTATA+TGG | - | chr4.4:13993824-13993843 | MS.gene09069:intron | 15.0% |
| !!! | AATAAATTACAATCATCTTT+TGG | + | chr4.4:13994037-13994056 | None:intergenic | 15.0% |
| !!! | ATAAATTACAATCATCTTTT+GGG | + | chr4.4:13994036-13994055 | None:intergenic | 15.0% |
| !! | AAACAAAAACCGAAAAATAA+GGG | - | chr4.4:13993239-13993258 | MS.gene09069:intron | 20.0% |
| !! | GAATCATAAAGATATAATGA+AGG | - | chr4.4:13993457-13993476 | MS.gene09069:intron | 20.0% |
| !! | TACTTTAAATTTCCTATTGT+AGG | - | chr4.4:13994775-13994794 | MS.gene09069:CDS | 20.0% |
| !!! | ACATCATTTTTTTTCATTTC+AGG | + | chr4.4:13994603-13994622 | None:intergenic | 20.0% |
| !!! | TTTAAAGTAATACGTGATTA+TGG | + | chr4.4:13994764-13994783 | None:intergenic | 20.0% |
| ! | AAAGACATCTTAAAAGCAAA+AGG | + | chr4.4:13994009-13994028 | None:intergenic | 25.0% |
| ! | AACAAAAACCGAAAAATAAG+GGG | - | chr4.4:13993240-13993259 | MS.gene09069:intron | 25.0% |
| ! | ACAGAACATGATATTGATAT+AGG | + | chr4.4:13993170-13993189 | None:intergenic | 25.0% |
| ! | ATAACAAAATCAAACACCAA+AGG | + | chr4.4:13994433-13994452 | None:intergenic | 25.0% |
| ! | CAAACAAAAACCGAAAAATA+AGG | - | chr4.4:13993238-13993257 | MS.gene09069:intron | 25.0% |
| ! | CTGATAAATAACAGAAAAGA+TGG | + | chr4.4:13994683-13994702 | None:intergenic | 25.0% |
| ! | GATGATTGTAATTTATTCGT+AGG | - | chr4.4:13994040-13994059 | MS.gene09069:intron | 25.0% |
| ! | GTTTCTATCATCCTTATTAA+TGG | + | chr4.4:13993294-13993313 | None:intergenic | 25.0% |
| ! | TCAAAAACAAGTACGATTAA+AGG | + | chr4.4:13993788-13993807 | None:intergenic | 25.0% |
| ! | TTATAACGCAAAAAACCAAT+AGG | - | chr4.4:13994072-13994091 | MS.gene09069:intron | 25.0% |
| !! | GATTTAGCTATAAGTTTTTG+GGG | + | chr4.4:13994407-13994426 | None:intergenic | 25.0% |
| !! | GGATTTAGCTATAAGTTTTT+GGG | + | chr4.4:13994408-13994427 | None:intergenic | 25.0% |
| !! | TGGATTTAGCTATAAGTTTT+TGG | + | chr4.4:13994409-13994428 | None:intergenic | 25.0% |
| !!! | AAACTTTTCCCCTTATTTTT+CGG | + | chr4.4:13993251-13993270 | None:intergenic | 25.0% |
| !!! | AAGCATAGTTTTGTTTGTTT+TGG | - | chr4.4:13994953-13994972 | MS.gene09069:CDS | 25.0% |
| !!! | CTTATTTTTCGGTTTTTGTT+TGG | + | chr4.4:13993240-13993259 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGTTATTCCACA+GGG | - | chr4.4:13994439-13994458 | MS.gene09069:CDS | 25.0% |
| AAGAATCTCGAATGAGAAAA+AGG | + | chr4.4:13993110-13993129 | None:intergenic | 30.0% | |
| AATGTGATGAGTAGATAAAG+TGG | + | chr4.4:13993141-13993160 | None:intergenic | 30.0% | |
| AATTTCCAACAACAATTCCA+AGG | - | chr4.4:13993324-13993343 | MS.gene09069:CDS | 30.0% | |
| CATCCAATTAAGAATGTTGT+AGG | - | chr4.4:13993662-13993681 | MS.gene09069:intron | 30.0% | |
| CTTCTATGCTAAGTGTTTAA+TGG | - | chr4.4:13993902-13993921 | MS.gene09069:intron | 30.0% | |
| TAATTCCAACATAGGTAACT+TGG | + | chr4.4:13994242-13994261 | None:intergenic | 30.0% | |
| TAATTCCAAGTTACCTATGT+TGG | - | chr4.4:13994234-13994253 | MS.gene09069:intron | 30.0% | |
| TCTCCTACAACATTCTTAAT+TGG | + | chr4.4:13993668-13993687 | None:intergenic | 30.0% | |
| !! | TGATTAGTCTCACATTAGTT+AGG | - | chr4.4:13994271-13994290 | MS.gene09069:intron | 30.0% |
| !! | TTTTGTTTGGATGTAGGATT+AGG | + | chr4.4:13993227-13993246 | None:intergenic | 30.0% |
| !!! | CTCAAATTTTGTTTCTACGA+GGG | - | chr4.4:13994861-13994880 | MS.gene09069:CDS | 30.0% |
| !!! | GTTTGATTTTGTTATTCCAC+AGG | - | chr4.4:13994438-13994457 | MS.gene09069:CDS | 30.0% |
| !!! | TCGCATTTTAATTCCAACAT+AGG | + | chr4.4:13994250-13994269 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGAACGCTATAAC+AGG | - | chr4.4:13993798-13993817 | MS.gene09069:intron | 30.0% |
| !!! | TTTTGTTTGTTTTGGCATCA+AGG | - | chr4.4:13994961-13994980 | MS.gene09069:CDS | 30.0% |
| AAAACCAATAGGTCGAATGT+AGG | - | chr4.4:13994083-13994102 | MS.gene09069:intron | 35.0% | |
| AAAAGAAATTGACCATACCC+TGG | + | chr4.4:13994543-13994562 | None:intergenic | 35.0% | |
| AAAGAAATTGACCATACCCT+GGG | + | chr4.4:13994542-13994561 | None:intergenic | 35.0% | |
| AAGAATGTTGTAGGAGATGA+TGG | - | chr4.4:13993671-13993690 | MS.gene09069:intron | 35.0% | |
| ACAAGTACGATTAAAGGACT+AGG | + | chr4.4:13993782-13993801 | None:intergenic | 35.0% | |
| AGATGGTGTGACCATTAATA+AGG | - | chr4.4:13993280-13993299 | MS.gene09069:intron | 35.0% | |
| AGTCTCACATTAGTTAGGAT+TGG | - | chr4.4:13994276-13994295 | MS.gene09069:intron | 35.0% | |
| CAATCTTAATCGCCTACAAT+AGG | + | chr4.4:13994790-13994809 | None:intergenic | 35.0% | |
| CATTAACATCGAGAAAGACT+TGG | - | chr4.4:13994811-13994830 | MS.gene09069:CDS | 35.0% | |
| CCTCGTAGAAACAAAATTTG+AGG | + | chr4.4:13994863-13994882 | None:intergenic | 35.0% | |
| CTGGAAAAATTTGAAAGAGC+TGG | - | chr4.4:13994472-13994491 | MS.gene09069:CDS | 35.0% | |
| GATATAATGAAGGACAGTGT+CGG | - | chr4.4:13993467-13993486 | MS.gene09069:intron | 35.0% | |
| GCTTATTGTACACACATTGA+AGG | + | chr4.4:13994937-13994956 | None:intergenic | 35.0% | |
| GTCTCACATTAGTTAGGATT+GGG | - | chr4.4:13994277-13994296 | MS.gene09069:intron | 35.0% | |
| TAAGGATGATAGAAACTCTG+AGG | - | chr4.4:13993298-13993317 | MS.gene09069:intron | 35.0% | |
| TAGTGAGTGATCATGAAGTA+AGG | + | chr4.4:13994646-13994665 | None:intergenic | 35.0% | |
| TATTCCTACATTCGACCTAT+TGG | + | chr4.4:13994090-13994109 | None:intergenic | 35.0% | |
| TTATAGCTAAATCCAGCCTT+TGG | - | chr4.4:13994414-13994433 | MS.gene09069:CDS | 35.0% | |
| TTTGGATGTAGGATTAGGTT+CGG | + | chr4.4:13993222-13993241 | None:intergenic | 35.0% | |
| ! | AGAAAGCAATAAAGGTGTAC+TGG | - | chr4.4:13994495-13994514 | MS.gene09069:CDS | 35.0% |
| ! | ATGATGGTGCTGAAATTGAT+TGG | - | chr4.4:13993687-13993706 | MS.gene09069:CDS | 35.0% |
| ! | TGATGGTGCTGAAATTGATT+GGG | - | chr4.4:13993688-13993707 | MS.gene09069:CDS | 35.0% |
| !! | TTCGGTTTTTGTTTGGATGT+AGG | + | chr4.4:13993233-13993252 | None:intergenic | 35.0% |
| !!! | CCTCAAATTTTGTTTCTACG+AGG | - | chr4.4:13994860-13994879 | MS.gene09069:CDS | 35.0% |
| AAAAGTTTCCAACGTGGAGA+TGG | - | chr4.4:13993263-13993282 | MS.gene09069:intron | 40.0% | |
| AGAGCTGGAGAAAGCAATAA+AGG | - | chr4.4:13994487-13994506 | MS.gene09069:CDS | 40.0% | |
| AGCAACAGTGCATCATTATG+AGG | + | chr4.4:13995016-13995035 | None:intergenic | 40.0% | |
| AGGACATTCTCGAACTTTCA+GGG | + | chr4.4:13994843-13994862 | None:intergenic | 40.0% | |
| AGGAGATCAATTGTTTGGAG+TGG | - | chr4.4:13993738-13993757 | MS.gene09069:CDS | 40.0% | |
| AGGGAATAAGATGGTGTACA+GGG | - | chr4.4:13994880-13994899 | MS.gene09069:CDS | 40.0% | |
| CAAAATCAAACACCAAAGGC+TGG | + | chr4.4:13994429-13994448 | None:intergenic | 40.0% | |
| CAGTACACAAGTGTTACAAG+CGG | - | chr4.4:13994700-13994719 | MS.gene09069:CDS | 40.0% | |
| GTACGATTAAAGGACTAGGA+TGG | + | chr4.4:13993778-13993797 | None:intergenic | 40.0% | |
| GTGCTGAAATTGATTGGGAA+GGG | - | chr4.4:13993693-13993712 | MS.gene09069:CDS | 40.0% | |
| GTTTCTACGAGGGAATAAGA+TGG | - | chr4.4:13994871-13994890 | MS.gene09069:CDS | 40.0% | |
| TGAGAAAAAGGTGAGAACGT+TGG | + | chr4.4:13993098-13993117 | None:intergenic | 40.0% | |
| TGCAATTCGGCAACAAAATG+CGG | - | chr4.4:13993424-13993443 | MS.gene09069:intron | 40.0% | |
| TGCTGAAATTGATTGGGAAG+GGG | - | chr4.4:13993694-13993713 | MS.gene09069:CDS | 40.0% | |
| TTGGATGTAGGATTAGGTTC+GGG | + | chr4.4:13993221-13993240 | None:intergenic | 40.0% | |
| ! | AAGAGACTCCAGGTGTTATA+TGG | + | chr4.4:13994734-13994753 | None:intergenic | 40.0% |
| ! | AGAACACGTTTGCTGCAATT+CGG | - | chr4.4:13993411-13993430 | MS.gene09069:intron | 40.0% |
| ! | CAATGATGATAGTGATGAGG+AGG | - | chr4.4:13993520-13993539 | MS.gene09069:intron | 40.0% |
| ! | CAGCAATGATGATAGTGATG+AGG | - | chr4.4:13993517-13993536 | MS.gene09069:intron | 40.0% |
| ! | CTATCATCATTGCTGCGTTT+TGG | + | chr4.4:13993512-13993531 | None:intergenic | 40.0% |
| ! | GGAGATCAATTGTTTGGAGT+GGG | - | chr4.4:13993739-13993758 | MS.gene09069:intron | 40.0% |
| ! | TGTACTGGAGTGCTAAAGAT+CGG | - | chr4.4:13994510-13994529 | MS.gene09069:CDS | 40.0% |
| AAGATGGTGTACAGGGAGAA+AGG | - | chr4.4:13994887-13994906 | MS.gene09069:CDS | 45.0% | |
| AAGGGGAAAAGTTTCCAACG+TGG | - | chr4.4:13993257-13993276 | MS.gene09069:intron | 45.0% | |
| ACAATGCAAAGAAGCCTGCA+TGG | - | chr4.4:13995097-13995116 | MS.gene09069:CDS | 45.0% | |
| CAACAATTCCAAGGAAGCCA+AGG | - | chr4.4:13993333-13993352 | MS.gene09069:CDS | 45.0% | |
| CTTTGCAGAACTCAGAACTG+CGG | - | chr4.4:13995041-13995060 | MS.gene09069:CDS | 45.0% | |
| GAAAAAGGTGAGAACGTTGG+AGG | + | chr4.4:13993095-13993114 | None:intergenic | 45.0% | |
| GAGGACATTCTCGAACTTTC+AGG | + | chr4.4:13994844-13994863 | None:intergenic | 45.0% | |
| GAGGGAATAAGATGGTGTAC+AGG | - | chr4.4:13994879-13994898 | MS.gene09069:CDS | 45.0% | |
| GCAATTCGGCAACAAAATGC+GGG | - | chr4.4:13993425-13993444 | MS.gene09069:intron | 45.0% | |
| GCCTTATCATCAATCCATGC+AGG | + | chr4.4:13995114-13995133 | None:intergenic | 45.0% | |
| GGCTTCCTTGGAATTGTTGT+TGG | + | chr4.4:13993332-13993351 | None:intergenic | 45.0% | |
| GGTGCAGGAGATCAATTGTT+TGG | - | chr4.4:13993733-13993752 | MS.gene09069:CDS | 45.0% | |
| TAAAGATCGGTTACCTCCCA+GGG | - | chr4.4:13994523-13994542 | MS.gene09069:CDS | 45.0% | |
| TAACCTCGCCATATAACACC+TGG | - | chr4.4:13994723-13994742 | MS.gene09069:CDS | 45.0% | |
| TCCACAGGGCAAATGATAAC+TGG | - | chr4.4:13994453-13994472 | MS.gene09069:CDS | 45.0% | |
| TCCAGTTATCATTTGCCCTG+TGG | + | chr4.4:13994457-13994476 | None:intergenic | 45.0% | |
| TGGAATACGTAAGAGACTCC+AGG | + | chr4.4:13994744-13994763 | None:intergenic | 45.0% | |
| TTGGGGAGTCTAGAAACATC+AGG | + | chr4.4:13994390-13994409 | None:intergenic | 45.0% | |
| ! | AGATTTTGTACGCGACAGAC+TGG | - | chr4.4:13993388-13993407 | MS.gene09069:CDS | 45.0% |
| ! | GCCTGCATGGATTGATGATA+AGG | - | chr4.4:13995110-13995129 | MS.gene09069:CDS | 45.0% |
| ! | GGTGCTGAAATTGATTGGGA+AGG | - | chr4.4:13993692-13993711 | MS.gene09069:CDS | 45.0% |
| ! | TGATGATAGTGATGAGGAGG+AGG | - | chr4.4:13993523-13993542 | MS.gene09069:intron | 45.0% |
| ! | TGTAGGATTAGGTTCGGGTT+CGG | + | chr4.4:13993216-13993235 | None:intergenic | 45.0% |
| ! | TTGGAGGCATAAGAGCTGTT+TGG | + | chr4.4:13993079-13993098 | None:intergenic | 45.0% |
| !! | TAAATAAATGATATATAAAA+AGG | - | chr4.4:13994301-13994320 | MS.gene09069:intron | 5.0% |
| AAGGGGAGACTGAGGATAAC+TGG | - | chr4.4:13993711-13993730 | MS.gene09069:CDS | 50.0% | |
| AGGGGAGACTGAGGATAACT+GGG | - | chr4.4:13993712-13993731 | MS.gene09069:CDS | 50.0% | |
| ATTGGATACGGATGTCGGGT+GGG | - | chr4.4:13993610-13993629 | MS.gene09069:intron | 50.0% | |
| CTAAAGATCGGTTACCTCCC+AGG | - | chr4.4:13994522-13994541 | MS.gene09069:CDS | 50.0% | |
| GAAATTGACCATACCCTGGG+AGG | + | chr4.4:13994539-13994558 | None:intergenic | 50.0% | |
| GAGGTGGAAGAAGAGGAAGA+TGG | - | chr4.4:13993542-13993561 | MS.gene09069:intron | 50.0% | |
| GCAACAAAATGCGGGTGCTT+TGG | - | chr4.4:13993433-13993452 | MS.gene09069:intron | 50.0% | |
| GTGGAAGAAGAGGAAGATGG+TGG | - | chr4.4:13993545-13993564 | MS.gene09069:intron | 50.0% | |
| TGAGAGCTGGCCATTGGATA+CGG | - | chr4.4:13993598-13993617 | MS.gene09069:intron | 50.0% | |
| TGGCCATTGGATACGGATGT+CGG | - | chr4.4:13993605-13993624 | MS.gene09069:intron | 50.0% | |
| TTGAGGAAGAGAGTGAGAGC+TGG | - | chr4.4:13993585-13993604 | MS.gene09069:intron | 50.0% | |
| ! | ACTCCAGGTGTTATATGGCG+AGG | + | chr4.4:13994729-13994748 | None:intergenic | 50.0% |
| ! | GAAGAAGAGGAAGATGGTGG+TGG | - | chr4.4:13993548-13993567 | MS.gene09069:intron | 50.0% |
| ! | GTAGGATTAGGTTCGGGTTC+GGG | + | chr4.4:13993215-13993234 | None:intergenic | 50.0% |
| ! | TGATAGTGATGAGGAGGAGG+TGG | - | chr4.4:13993526-13993545 | MS.gene09069:intron | 50.0% |
| AAGGCGCGGTCGTAAAAGTG+AGG | - | chr4.4:13993352-13993371 | MS.gene09069:CDS | 55.0% | |
| ACTCAGAACTGCGGATGAGC+TGG | - | chr4.4:13995050-13995069 | MS.gene09069:CDS | 55.0% | |
| AGAGAGTGAGAGCTGGCCAT+TGG | - | chr4.4:13993592-13993611 | MS.gene09069:intron | 55.0% | |
| ATCGGTTACCTCCCAGGGTA+TGG | - | chr4.4:13994528-13994547 | MS.gene09069:CDS | 55.0% | |
| ATTCCAAGGAAGCCAAGGCG+CGG | - | chr4.4:13993338-13993357 | MS.gene09069:CDS | 55.0% | |
| CACCCGACATCCGTATCCAA+TGG | + | chr4.4:13993611-13993630 | None:intergenic | 55.0% | |
| CATTGGATACGGATGTCGGG+TGG | - | chr4.4:13993609-13993628 | MS.gene09069:intron | 55.0% | |
| GACTGAGGATAACTGGGTGC+AGG | - | chr4.4:13993718-13993737 | MS.gene09069:CDS | 55.0% | |
| GGCCATTGGATACGGATGTC+GGG | - | chr4.4:13993606-13993625 | MS.gene09069:intron | 55.0% | |
| TGAGGAGGAGGTGGAAGAAG+AGG | - | chr4.4:13993535-13993554 | MS.gene09069:intron | 55.0% | |
| TGATTGGGAAGGGGAGACTG+AGG | - | chr4.4:13993703-13993722 | MS.gene09069:CDS | 55.0% | |
| TGGAGAGAAGGCGGTGATTG+AGG | - | chr4.4:13993568-13993587 | MS.gene09069:intron | 55.0% | |
| TGGTCACACCATCTCCACGT+TGG | + | chr4.4:13993274-13993293 | None:intergenic | 55.0% | |
| TTGGATACGGATGTCGGGTG+GGG | - | chr4.4:13993611-13993630 | MS.gene09069:intron | 55.0% | |
| !! | AGATGGTGGTGGAGAGAAGG+CGG | - | chr4.4:13993559-13993578 | MS.gene09069:intron | 55.0% |
| !! | GGAAGATGGTGGTGGAGAGA+AGG | - | chr4.4:13993556-13993575 | MS.gene09069:intron | 55.0% |
| !! | TCACTTTTACGACCGCGCCT+TGG | + | chr4.4:13993353-13993372 | None:intergenic | 55.0% |
| CGACCGCGCCTTGGCTTCCT+TGG | + | chr4.4:13993344-13993363 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 13993065 | 13995152 | 13993065 | ID=MS.gene09069 |
| chr4.4 | mRNA | 13993065 | 13995152 | 13993065 | ID=MS.gene09069.t1;Parent=MS.gene09069 |
| chr4.4 | exon | 13994398 | 13995152 | 13994398 | ID=MS.gene09069.t1.exon1;Parent=MS.gene09069.t1 |
| chr4.4 | CDS | 13994398 | 13995152 | 13994398 | ID=cds.MS.gene09069.t1;Parent=MS.gene09069.t1 |
| chr4.4 | exon | 13993673 | 13993757 | 13993673 | ID=MS.gene09069.t1.exon2;Parent=MS.gene09069.t1 |
| chr4.4 | CDS | 13993673 | 13993757 | 13993673 | ID=cds.MS.gene09069.t1;Parent=MS.gene09069.t1 |
| chr4.4 | exon | 13993309 | 13993420 | 13993309 | ID=MS.gene09069.t1.exon3;Parent=MS.gene09069.t1 |
| chr4.4 | CDS | 13993309 | 13993420 | 13993309 | ID=cds.MS.gene09069.t1;Parent=MS.gene09069.t1 |
| chr4.4 | exon | 13993065 | 13993168 | 13993065 | ID=MS.gene09069.t1.exon4;Parent=MS.gene09069.t1 |
| chr4.4 | CDS | 13993065 | 13993168 | 13993065 | ID=cds.MS.gene09069.t1;Parent=MS.gene09069.t1 |
| Gene Sequence |
| Protein sequence |
