Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09946.t1 | AFK45126.1 | 97.4 | 196 | 5 | 0 | 1 | 196 | 1 | 196 | 3.90E-98 | 367.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09946.t1 | P17407 | 47.2 | 180 | 95 | 0 | 12 | 191 | 13 | 192 | 4.3e-45 | 182.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09946.t1 | G7KG88 | 97.4 | 196 | 5 | 0 | 1 | 196 | 22 | 217 | 2.8e-98 | 367.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049222 | MS.gene09946 | -0.819789 | 9.66E-53 | -1.69E-46 |
MS.gene049232 | MS.gene09946 | -0.835748 | 1.40E-56 | -1.69E-46 |
MS.gene049320 | MS.gene09946 | -0.815949 | 7.11E-52 | -1.69E-46 |
MS.gene04986 | MS.gene09946 | 0.804001 | 2.66E-49 | -1.69E-46 |
MS.gene05010 | MS.gene09946 | -0.811595 | 6.47E-51 | -1.69E-46 |
MS.gene050216 | MS.gene09946 | -0.82199 | 3.01E-53 | -1.69E-46 |
MS.gene050504 | MS.gene09946 | -0.81718 | 3.77E-52 | -1.69E-46 |
MS.gene050518 | MS.gene09946 | -0.806063 | 9.87E-50 | -1.69E-46 |
MS.gene050612 | MS.gene09946 | -0.820226 | 7.67E-53 | -1.69E-46 |
MS.gene050772 | MS.gene09946 | -0.809781 | 1.60E-50 | -1.69E-46 |
MS.gene050883 | MS.gene09946 | 0.80219 | 6.31E-49 | -1.69E-46 |
MS.gene051364 | MS.gene09946 | 0.818034 | 2.42E-52 | -1.69E-46 |
MS.gene051366 | MS.gene09946 | 0.818536 | 1.86E-52 | -1.69E-46 |
MS.gene051367 | MS.gene09946 | 0.838187 | 3.34E-57 | -1.69E-46 |
MS.gene052066 | MS.gene09946 | -0.803182 | 3.94E-49 | -1.69E-46 |
MS.gene052482 | MS.gene09946 | -0.809481 | 1.85E-50 | -1.69E-46 |
MS.gene052486 | MS.gene09946 | -0.824926 | 6.19E-54 | -1.69E-46 |
MS.gene053420 | MS.gene09946 | 0.80321 | 3.89E-49 | -1.69E-46 |
MS.gene055154 | MS.gene09946 | 0.811266 | 7.63E-51 | -1.69E-46 |
MS.gene055202 | MS.gene09946 | 0.800249 | 1.57E-48 | -1.69E-46 |
MS.gene055362 | MS.gene09946 | -0.810606 | 1.06E-50 | -1.69E-46 |
MS.gene055502 | MS.gene09946 | -0.808356 | 3.22E-50 | -1.69E-46 |
MS.gene055577 | MS.gene09946 | -0.802531 | 5.37E-49 | -1.69E-46 |
MS.gene056504 | MS.gene09946 | -0.846888 | 1.64E-59 | -1.69E-46 |
MS.gene056549 | MS.gene09946 | -0.805557 | 1.26E-49 | -1.69E-46 |
MS.gene056657 | MS.gene09946 | -0.810983 | 8.79E-51 | -1.69E-46 |
MS.gene058109 | MS.gene09946 | 0.819623 | 1.05E-52 | -1.69E-46 |
MS.gene058111 | MS.gene09946 | 0.860703 | 1.72E-63 | -1.69E-46 |
MS.gene058171 | MS.gene09946 | 0.838378 | 2.98E-57 | -1.69E-46 |
MS.gene058173 | MS.gene09946 | 0.830878 | 2.29E-55 | -1.69E-46 |
MS.gene058175 | MS.gene09946 | 0.837758 | 4.30E-57 | -1.69E-46 |
MS.gene058419 | MS.gene09946 | -0.81162 | 6.39E-51 | -1.69E-46 |
MS.gene059022 | MS.gene09946 | -0.802709 | 4.93E-49 | -1.69E-46 |
MS.gene059865 | MS.gene09946 | -0.838102 | 3.51E-57 | -1.69E-46 |
MS.gene060482 | MS.gene09946 | -0.803545 | 3.31E-49 | -1.69E-46 |
MS.gene060595 | MS.gene09946 | 0.824235 | 9.01E-54 | -1.69E-46 |
MS.gene060703 | MS.gene09946 | -0.811167 | 8.02E-51 | -1.69E-46 |
MS.gene060762 | MS.gene09946 | -0.807856 | 4.12E-50 | -1.69E-46 |
MS.gene060778 | MS.gene09946 | -0.801752 | 7.76E-49 | -1.69E-46 |
MS.gene06077 | MS.gene09946 | -0.818396 | 2.00E-52 | -1.69E-46 |
MS.gene060823 | MS.gene09946 | 0.809822 | 1.56E-50 | -1.69E-46 |
MS.gene060982 | MS.gene09946 | -0.832686 | 8.20E-56 | -1.69E-46 |
MS.gene061134 | MS.gene09946 | -0.803094 | 4.11E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene09946 | MS.gene56241 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09946.t1 | MTR_5g012000 | 97.449 | 196 | 5 | 0 | 1 | 196 | 22 | 217 | 1.74e-142 | 395 |
MS.gene09946.t1 | MTR_4g101760 | 63.402 | 194 | 60 | 2 | 9 | 191 | 10 | 203 | 9.12e-85 | 249 |
MS.gene09946.t1 | MTR_3g008840 | 53.571 | 168 | 77 | 1 | 23 | 190 | 21 | 187 | 8.04e-65 | 198 |
MS.gene09946.t1 | MTR_3g008820 | 51.190 | 168 | 81 | 1 | 23 | 190 | 20 | 186 | 3.72e-62 | 191 |
MS.gene09946.t1 | MTR_4g035905 | 43.030 | 165 | 91 | 1 | 27 | 191 | 36 | 197 | 6.51e-45 | 147 |
MS.gene09946.t1 | MTR_4g035870 | 38.191 | 199 | 111 | 2 | 1 | 190 | 1 | 196 | 6.50e-42 | 140 |
MS.gene09946.t1 | MTR_4g035880 | 42.073 | 164 | 92 | 1 | 27 | 190 | 36 | 196 | 2.55e-41 | 138 |
MS.gene09946.t1 | MTR_4g025550 | 38.308 | 201 | 106 | 6 | 9 | 195 | 10 | 206 | 8.50e-39 | 132 |
MS.gene09946.t1 | MTR_4g025610 | 37.245 | 196 | 115 | 4 | 7 | 195 | 12 | 206 | 7.60e-38 | 130 |
MS.gene09946.t1 | MTR_4g025590 | 38.636 | 176 | 96 | 4 | 27 | 193 | 3 | 175 | 1.37e-36 | 126 |
MS.gene09946.t1 | MTR_4g025620 | 35.567 | 194 | 113 | 4 | 7 | 191 | 12 | 202 | 1.23e-35 | 124 |
MS.gene09946.t1 | MTR_8g104765 | 38.596 | 171 | 96 | 3 | 25 | 187 | 42 | 211 | 1.70e-33 | 119 |
MS.gene09946.t1 | MTR_4g120825 | 38.596 | 171 | 96 | 3 | 25 | 187 | 33 | 202 | 1.71e-33 | 119 |
MS.gene09946.t1 | MTR_4g120830 | 38.596 | 171 | 96 | 3 | 25 | 187 | 33 | 202 | 2.69e-33 | 118 |
MS.gene09946.t1 | MTR_7g108790 | 35.802 | 162 | 99 | 2 | 28 | 189 | 34 | 190 | 3.26e-30 | 110 |
MS.gene09946.t1 | MTR_3g008760 | 34.161 | 161 | 102 | 2 | 27 | 185 | 66 | 224 | 5.41e-28 | 105 |
MS.gene09946.t1 | MTR_2g043560 | 35.912 | 181 | 95 | 6 | 16 | 189 | 23 | 189 | 1.26e-25 | 98.6 |
MS.gene09946.t1 | MTR_4g124855 | 31.606 | 193 | 115 | 5 | 8 | 189 | 13 | 199 | 2.45e-24 | 95.5 |
MS.gene09946.t1 | MTR_4g035855 | 31.056 | 161 | 110 | 1 | 27 | 187 | 43 | 202 | 1.24e-22 | 90.9 |
MS.gene09946.t1 | MTR_1g088540 | 30.405 | 148 | 98 | 2 | 42 | 189 | 1 | 143 | 3.99e-19 | 80.1 |
MS.gene09946.t1 | MTR_3g091380 | 30.864 | 162 | 107 | 2 | 24 | 182 | 74 | 233 | 1.20e-17 | 80.5 |
MS.gene09946.t1 | MTR_1g008140 | 29.762 | 168 | 106 | 3 | 24 | 182 | 78 | 242 | 9.21e-17 | 78.2 |
MS.gene09946.t1 | MTR_8g023310 | 25.478 | 157 | 113 | 2 | 28 | 182 | 68 | 222 | 8.30e-15 | 72.4 |
MS.gene09946.t1 | MTR_8g023150 | 29.341 | 167 | 108 | 5 | 20 | 183 | 69 | 228 | 3.83e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09946.t1 | AT1G62770 | 50.244 | 205 | 92 | 6 | 1 | 196 | 1 | 204 | 5.06e-61 | 189 |
MS.gene09946.t1 | AT4G12390 | 56.805 | 169 | 69 | 2 | 27 | 192 | 39 | 206 | 1.79e-60 | 187 |
MS.gene09946.t1 | AT4G25260 | 46.409 | 181 | 96 | 1 | 11 | 190 | 21 | 201 | 2.27e-55 | 174 |
MS.gene09946.t1 | AT5G62350 | 47.273 | 165 | 86 | 1 | 27 | 190 | 38 | 202 | 8.20e-55 | 173 |
MS.gene09946.t1 | AT3G47380 | 42.784 | 194 | 101 | 2 | 7 | 190 | 9 | 202 | 3.56e-52 | 166 |
MS.gene09946.t1 | AT5G62360 | 41.818 | 165 | 92 | 2 | 26 | 190 | 42 | 202 | 2.57e-45 | 149 |
MS.gene09946.t1 | AT1G62760 | 43.182 | 176 | 90 | 2 | 20 | 191 | 140 | 309 | 7.70e-42 | 143 |
MS.gene09946.t1 | AT1G14890 | 41.566 | 166 | 90 | 2 | 26 | 189 | 57 | 217 | 8.00e-39 | 133 |
MS.gene09946.t1 | AT2G01610 | 40.113 | 177 | 93 | 3 | 26 | 189 | 43 | 219 | 2.79e-37 | 129 |
MS.gene09946.t1 | AT5G20740 | 40.361 | 166 | 90 | 3 | 26 | 186 | 32 | 193 | 1.61e-35 | 124 |
MS.gene09946.t1 | AT5G20740 | 40.361 | 166 | 90 | 3 | 26 | 186 | 66 | 227 | 4.95e-35 | 124 |
MS.gene09946.t1 | AT4G25250 | 34.969 | 163 | 104 | 2 | 27 | 188 | 37 | 198 | 2.48e-34 | 120 |
MS.gene09946.t1 | AT4G00080 | 36.683 | 199 | 111 | 6 | 1 | 185 | 1 | 198 | 2.75e-34 | 121 |
MS.gene09946.t1 | AT1G70720 | 34.254 | 181 | 110 | 3 | 12 | 187 | 18 | 194 | 2.86e-29 | 107 |
MS.gene09946.t1 | AT1G70720 | 34.254 | 181 | 110 | 3 | 12 | 187 | 30 | 206 | 3.38e-29 | 108 |
MS.gene09946.t1 | AT5G51520 | 33.929 | 168 | 101 | 2 | 27 | 186 | 37 | 202 | 8.61e-28 | 104 |
MS.gene09946.t1 | AT1G23205 | 35.870 | 184 | 105 | 4 | 11 | 184 | 17 | 197 | 2.71e-25 | 97.8 |
MS.gene09946.t1 | AT3G62820 | 32.796 | 186 | 115 | 5 | 8 | 188 | 11 | 191 | 1.76e-22 | 90.1 |
MS.gene09946.t1 | AT3G14310 | 27.933 | 179 | 124 | 3 | 14 | 189 | 43 | 219 | 8.97e-21 | 89.7 |
MS.gene09946.t1 | AT2G47670 | 30.675 | 163 | 109 | 2 | 25 | 187 | 46 | 204 | 1.03e-19 | 83.2 |
MS.gene09946.t1 | AT1G53830 | 28.235 | 170 | 119 | 2 | 21 | 189 | 55 | 222 | 8.07e-18 | 81.3 |
MS.gene09946.t1 | AT3G49220 | 32.184 | 174 | 92 | 7 | 24 | 190 | 128 | 282 | 2.24e-15 | 73.9 |
MS.gene09946.t1 | AT3G49220 | 32.184 | 174 | 92 | 7 | 24 | 190 | 128 | 282 | 3.39e-15 | 73.6 |
MS.gene09946.t1 | AT3G49220 | 32.184 | 174 | 92 | 7 | 24 | 190 | 83 | 237 | 4.03e-15 | 73.2 |
MS.gene09946.t1 | AT5G53370 | 27.500 | 160 | 108 | 4 | 24 | 182 | 107 | 259 | 4.39e-13 | 67.4 |
MS.gene09946.t1 | AT5G53370 | 27.500 | 160 | 108 | 4 | 24 | 182 | 71 | 223 | 5.08e-13 | 67.0 |
MS.gene09946.t1 | AT3G14300 | 26.136 | 176 | 123 | 2 | 22 | 191 | 265 | 439 | 2.25e-12 | 65.5 |
MS.gene09946.t1 | AT5G62340 | 25.616 | 203 | 120 | 7 | 9 | 190 | 14 | 206 | 2.77e-11 | 60.5 |
Find 53 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATGATAACACTTGTCTTGA+TGG | 0.271370 | 5.2:+4469102 | MS.gene09946:CDS |
ACTTGTCTTGATGGCTTTGC+TGG | 0.284433 | 5.2:+4469111 | MS.gene09946:CDS |
TAGAGCAGGGGTTTATTTGC+TGG | 0.342763 | 5.2:+4468681 | MS.gene09946:CDS |
AGAAAACATGGGTGACAGTT+TGG | 0.352972 | 5.2:+4468969 | MS.gene09946:CDS |
ATTGACAACCCTGTCCTTGA+TGG | 0.385514 | 5.2:-4469163 | None:intergenic |
ACAGTCTTAGCCAATCGGTT+AGG | 0.388918 | 5.2:+4468992 | MS.gene09946:CDS |
TACCAGCAACACACTCGCTT+TGG | 0.400248 | 5.2:+4469197 | MS.gene09946:CDS |
ATGGGGTATGCGAGCGTGAT+TGG | 0.403801 | 5.2:+4468808 | MS.gene09946:CDS |
AACCAAAGCGAGTGTGTTGC+TGG | 0.408904 | 5.2:-4469199 | None:intergenic |
TTCCATGAATGGAATTGTTA+AGG | 0.412818 | 5.2:+4469137 | MS.gene09946:CDS |
TCGTTAGTTGTCGCTCGCTT+TGG | 0.415738 | 5.2:-4468831 | None:intergenic |
AGCCTTAACAATTCCATTCA+TGG | 0.416556 | 5.2:-4469139 | None:intergenic |
GTAAACATGGCGGCTAGAGC+AGG | 0.417002 | 5.2:+4468667 | None:intergenic |
ACATGAACAACGTGCAGACT+TGG | 0.438369 | 5.2:+4469061 | MS.gene09946:CDS |
AGCCAATCGGTTAGGGAGTT+AGG | 0.439103 | 5.2:+4469000 | MS.gene09946:CDS |
TTTGCTGGTCCTTCCATGAA+TGG | 0.446590 | 5.2:+4469126 | MS.gene09946:CDS |
CGATGCACTCGATCGTGTCC+TGG | 0.450154 | 5.2:-4468878 | None:intergenic |
CAGTCTTAGCCAATCGGTTA+GGG | 0.452763 | 5.2:+4468993 | MS.gene09946:CDS |
AGACATTGAACGCATAAAAC+AGG | 0.460054 | 5.2:-4468784 | None:intergenic |
GGCAGTATTGGTCATGCTGT+TGG | 0.460878 | 5.2:+4469021 | MS.gene09946:CDS |
TTTATGCGTTCAATGTCTCA+TGG | 0.462904 | 5.2:+4468789 | MS.gene09946:CDS |
GTTAGGGAGTTAGGCAGTAT+TGG | 0.470731 | 5.2:+4469009 | MS.gene09946:CDS |
GAACTCTGATGGGGTTATAG+AGG | 0.476311 | 5.2:-4468731 | None:intergenic |
TTAAGGCTGCCATCAAGGAC+AGG | 0.476862 | 5.2:+4469154 | MS.gene09946:CDS |
TGTACGGCTCTGTACTCCCT+TGG | 0.486585 | 5.2:-4468937 | None:intergenic |
CTCTATCAGTGAGCATATCC+AGG | 0.495431 | 5.2:+4468860 | MS.gene09946:CDS |
TTATGCGTTCAATGTCTCAT+GGG | 0.496994 | 5.2:+4468790 | MS.gene09946:CDS |
TTTGGACAGTCTTAGCCAAT+CGG | 0.504656 | 5.2:+4468987 | MS.gene09946:CDS |
GGCAAGAGGCATCAAGCCAA+GGG | 0.526611 | 5.2:+4468921 | MS.gene09946:CDS |
TTCTGCAGTTCGATGGCTTG+AGG | 0.534233 | 5.2:-4469232 | None:intergenic |
AATTGTTAAGGCTGCCATCA+AGG | 0.538854 | 5.2:+4469149 | MS.gene09946:CDS |
TGCCTAACTCCCTAACCGAT+TGG | 0.544285 | 5.2:-4469002 | None:intergenic |
AGGCAAGAGGCATCAAGCCA+AGG | 0.545433 | 5.2:+4468920 | MS.gene09946:CDS |
TAAACATGGCGGCTAGAGCA+GGG | 0.549343 | 5.2:+4468668 | None:intergenic |
GAGGACTTGATGAACTCTGA+TGG | 0.549989 | 5.2:-4468742 | None:intergenic |
AGGACTTGATGAACTCTGAT+GGG | 0.550827 | 5.2:-4468741 | None:intergenic |
AAGGAGTTTCTGCAGTTCGA+TGG | 0.560457 | 5.2:-4469239 | None:intergenic |
CTGCAGTCACAAGGCTCATG+AGG | 0.571475 | 5.2:-4468705 | None:intergenic |
ACAAGACTGCATAGAAAACA+TGG | 0.577763 | 5.2:+4468957 | MS.gene09946:CDS |
CATGAACAACGTGCAGACTT+GGG | 0.585314 | 5.2:+4469062 | MS.gene09946:CDS |
TATGCGTTCAATGTCTCATG+GGG | 0.593117 | 5.2:+4468791 | MS.gene09946:CDS |
TTAACAATTCCATTCATGGA+AGG | 0.596367 | 5.2:-4469135 | None:intergenic |
TAAGGCTGCCATCAAGGACA+GGG | 0.619720 | 5.2:+4469155 | MS.gene09946:CDS |
TATTGGTCATGCTGTTGGAG+AGG | 0.620267 | 5.2:+4469026 | MS.gene09946:CDS |
TAGAGGATTCTGCAGTCACA+AGG | 0.636790 | 5.2:-4468714 | None:intergenic |
CAGAAGATATCAAAGGCAAG+AGG | 0.641738 | 5.2:+4468907 | MS.gene09946:CDS |
GTTTGTACAGAAGATATCAA+AGG | 0.649432 | 5.2:+4468900 | MS.gene09946:CDS |
AAACATGGCGGCTAGAGCAG+GGG | 0.656730 | 5.2:+4468669 | None:intergenic |
ATAGCGAGTAGCTCTACATG+AGG | 0.683240 | 5.2:-4468761 | None:intergenic |
GGATATGCTCACTGATAGAG+CGG | 0.692375 | 5.2:-4468857 | None:intergenic |
GGACTTGATGAACTCTGATG+GGG | 0.708124 | 5.2:-4468740 | None:intergenic |
CAAGACTGCATAGAAAACAT+GGG | 0.713583 | 5.2:+4468958 | MS.gene09946:CDS |
CTGTTGGAGAGGACTTCGTG+TGG | 0.729717 | 5.2:+4469037 | MS.gene09946:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
GTTTGTACAGAAGATATCAA+AGG | + | chr5.2:4468900-4468919 | MS.gene09946:CDS | 30.0% | |
TTAACAATTCCATTCATGGA+AGG | - | chr5.2:4469138-4469157 | None:intergenic | 30.0% | |
TTCCATGAATGGAATTGTTA+AGG | + | chr5.2:4469137-4469156 | MS.gene09946:CDS | 30.0% | |
ACAAGACTGCATAGAAAACA+TGG | + | chr5.2:4468957-4468976 | MS.gene09946:CDS | 35.0% | |
AGACATTGAACGCATAAAAC+AGG | - | chr5.2:4468787-4468806 | None:intergenic | 35.0% | |
AGCCTTAACAATTCCATTCA+TGG | - | chr5.2:4469142-4469161 | None:intergenic | 35.0% | |
CAAGACTGCATAGAAAACAT+GGG | + | chr5.2:4468958-4468977 | MS.gene09946:CDS | 35.0% | |
GATGATAACACTTGTCTTGA+TGG | + | chr5.2:4469102-4469121 | MS.gene09946:CDS | 35.0% | |
TTATGCGTTCAATGTCTCAT+GGG | + | chr5.2:4468790-4468809 | MS.gene09946:CDS | 35.0% | |
TTTATGCGTTCAATGTCTCA+TGG | + | chr5.2:4468789-4468808 | MS.gene09946:CDS | 35.0% | |
!! | GTTTTCTATGCAGTCTTGTA+CGG | - | chr5.2:4468956-4468975 | None:intergenic | 35.0% |
AATTGTTAAGGCTGCCATCA+AGG | + | chr5.2:4469149-4469168 | MS.gene09946:CDS | 40.0% | |
AGAAAACATGGGTGACAGTT+TGG | + | chr5.2:4468969-4468988 | MS.gene09946:CDS | 40.0% | |
AGGACTTGATGAACTCTGAT+GGG | - | chr5.2:4468744-4468763 | None:intergenic | 40.0% | |
CAGAAGATATCAAAGGCAAG+AGG | + | chr5.2:4468907-4468926 | MS.gene09946:CDS | 40.0% | |
TATGCGTTCAATGTCTCATG+GGG | + | chr5.2:4468791-4468810 | MS.gene09946:CDS | 40.0% | |
TTTGGACAGTCTTAGCCAAT+CGG | + | chr5.2:4468987-4469006 | MS.gene09946:CDS | 40.0% | |
AAGGAGTTTCTGCAGTTCGA+TGG | - | chr5.2:4469242-4469261 | None:intergenic | 45.0% | |
ACAGTCTTAGCCAATCGGTT+AGG | + | chr5.2:4468992-4469011 | MS.gene09946:CDS | 45.0% | |
ACATGAACAACGTGCAGACT+TGG | + | chr5.2:4469061-4469080 | MS.gene09946:CDS | 45.0% | |
ATTGACAACCCTGTCCTTGA+TGG | - | chr5.2:4469166-4469185 | None:intergenic | 45.0% | |
CAGTCTTAGCCAATCGGTTA+GGG | + | chr5.2:4468993-4469012 | MS.gene09946:CDS | 45.0% | |
CATGAACAACGTGCAGACTT+GGG | + | chr5.2:4469062-4469081 | MS.gene09946:CDS | 45.0% | |
CTCTATCAGTGAGCATATCC+AGG | + | chr5.2:4468860-4468879 | MS.gene09946:CDS | 45.0% | |
GAACTCTGATGGGGTTATAG+AGG | - | chr5.2:4468734-4468753 | None:intergenic | 45.0% | |
GAGGACTTGATGAACTCTGA+TGG | - | chr5.2:4468745-4468764 | None:intergenic | 45.0% | |
GGACTTGATGAACTCTGATG+GGG | - | chr5.2:4468743-4468762 | None:intergenic | 45.0% | |
GGATATGCTCACTGATAGAG+CGG | - | chr5.2:4468860-4468879 | None:intergenic | 45.0% | |
GTTAGGGAGTTAGGCAGTAT+TGG | + | chr5.2:4469009-4469028 | MS.gene09946:CDS | 45.0% | |
TAGAGCAGGGGTTTATTTGC+TGG | + | chr5.2:4468681-4468700 | MS.gene09946:CDS | 45.0% | |
TAGAGGATTCTGCAGTCACA+AGG | - | chr5.2:4468717-4468736 | None:intergenic | 45.0% | |
TATTGGTCATGCTGTTGGAG+AGG | + | chr5.2:4469026-4469045 | MS.gene09946:CDS | 45.0% | |
TTTGCTGGTCCTTCCATGAA+TGG | + | chr5.2:4469126-4469145 | MS.gene09946:CDS | 45.0% | |
! | ACTTGTCTTGATGGCTTTGC+TGG | + | chr5.2:4469111-4469130 | MS.gene09946:CDS | 45.0% |
! | ATAGCGAGTAGCTCTACATG+AGG | - | chr5.2:4468764-4468783 | None:intergenic | 45.0% |
AACCAAAGCGAGTGTGTTGC+TGG | - | chr5.2:4469202-4469221 | None:intergenic | 50.0% | |
AGCCAATCGGTTAGGGAGTT+AGG | + | chr5.2:4469000-4469019 | MS.gene09946:CDS | 50.0% | |
TAAGGCTGCCATCAAGGACA+GGG | + | chr5.2:4469155-4469174 | MS.gene09946:CDS | 50.0% | |
TACCAGCAACACACTCGCTT+TGG | + | chr5.2:4469197-4469216 | MS.gene09946:CDS | 50.0% | |
TCGTTAGTTGTCGCTCGCTT+TGG | - | chr5.2:4468834-4468853 | None:intergenic | 50.0% | |
TGCCTAACTCCCTAACCGAT+TGG | - | chr5.2:4469005-4469024 | None:intergenic | 50.0% | |
TTAAGGCTGCCATCAAGGAC+AGG | + | chr5.2:4469154-4469173 | MS.gene09946:CDS | 50.0% | |
TTCTGCAGTTCGATGGCTTG+AGG | - | chr5.2:4469235-4469254 | None:intergenic | 50.0% | |
!! | GGCAGTATTGGTCATGCTGT+TGG | + | chr5.2:4469021-4469040 | MS.gene09946:CDS | 50.0% |
ATGGGGTATGCGAGCGTGAT+TGG | + | chr5.2:4468808-4468827 | MS.gene09946:CDS | 55.0% | |
CTGCAGTCACAAGGCTCATG+AGG | - | chr5.2:4468708-4468727 | None:intergenic | 55.0% | |
CTGTTGGAGAGGACTTCGTG+TGG | + | chr5.2:4469037-4469056 | MS.gene09946:CDS | 55.0% | |
TGTACGGCTCTGTACTCCCT+TGG | - | chr5.2:4468940-4468959 | None:intergenic | 55.0% | |
!! | AGGCAAGAGGCATCAAGCCA+AGG | + | chr5.2:4468920-4468939 | MS.gene09946:CDS | 55.0% |
!! | GGCAAGAGGCATCAAGCCAA+GGG | + | chr5.2:4468921-4468940 | MS.gene09946:CDS | 55.0% |
CGATGCACTCGATCGTGTCC+TGG | - | chr5.2:4468881-4468900 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 4468673 | 4469263 | 4468673 | ID=MS.gene09946 |
chr5.2 | mRNA | 4468673 | 4469263 | 4468673 | ID=MS.gene09946.t1;Parent=MS.gene09946 |
chr5.2 | exon | 4468673 | 4469263 | 4468673 | ID=MS.gene09946.t1.exon1;Parent=MS.gene09946.t1 |
chr5.2 | CDS | 4468673 | 4469263 | 4468673 | ID=cds.MS.gene09946.t1;Parent=MS.gene09946.t1 |
Gene Sequence |
Protein sequence |