Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21757.t1 | RHN53403.1 | 99.2 | 389 | 3 | 0 | 1 | 389 | 50 | 438 | 3.00E-222 | 780.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21757.t1 | P30077 | 99.0 | 389 | 4 | 0 | 1 | 389 | 1 | 389 | 4.6e-224 | 778.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21757.t1 | A0A072UNH2 | 99.2 | 389 | 3 | 0 | 1 | 389 | 1 | 389 | 2.1e-222 | 780.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049611 | MS.gene21757 | 0.80073 | 1.26E-48 | -1.69E-46 |
| MS.gene050380 | MS.gene21757 | 0.826782 | 2.25E-54 | -1.69E-46 |
| MS.gene050381 | MS.gene21757 | 0.861047 | 1.35E-63 | -1.69E-46 |
| MS.gene050883 | MS.gene21757 | 0.844515 | 7.21E-59 | -1.69E-46 |
| MS.gene05104 | MS.gene21757 | 0.801269 | 9.75E-49 | -1.69E-46 |
| MS.gene051127 | MS.gene21757 | 0.817016 | 4.10E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene21757 | 0.813846 | 2.08E-51 | -1.69E-46 |
| MS.gene053561 | MS.gene21757 | 0.801149 | 1.03E-48 | -1.69E-46 |
| MS.gene054708 | MS.gene21757 | 0.81832 | 2.08E-52 | -1.69E-46 |
| MS.gene055124 | MS.gene21757 | 0.870164 | 1.79E-66 | -1.69E-46 |
| MS.gene055139 | MS.gene21757 | 0.805945 | 1.04E-49 | -1.69E-46 |
| MS.gene055154 | MS.gene21757 | 0.833655 | 4.71E-56 | -1.69E-46 |
| MS.gene055202 | MS.gene21757 | 0.809566 | 1.78E-50 | -1.69E-46 |
| MS.gene055959 | MS.gene21757 | 0.861499 | 9.83E-64 | -1.69E-46 |
| MS.gene056298 | MS.gene21757 | 0.801437 | 9.01E-49 | -1.69E-46 |
| MS.gene056310 | MS.gene21757 | 0.831088 | 2.03E-55 | -1.69E-46 |
| MS.gene056311 | MS.gene21757 | 0.826931 | 2.07E-54 | -1.69E-46 |
| MS.gene056313 | MS.gene21757 | 0.869575 | 2.79E-66 | -1.69E-46 |
| MS.gene057550 | MS.gene21757 | 0.824073 | 9.83E-54 | -1.69E-46 |
| MS.gene058093 | MS.gene21757 | 0.861612 | 9.08E-64 | -1.69E-46 |
| MS.gene058099 | MS.gene21757 | 0.859155 | 5.03E-63 | -1.69E-46 |
| MS.gene058108 | MS.gene21757 | 0.884308 | 2.14E-71 | -1.69E-46 |
| MS.gene058109 | MS.gene21757 | 0.925341 | 2.09E-90 | -1.69E-46 |
| MS.gene058111 | MS.gene21757 | 0.819936 | 8.94E-53 | -1.69E-46 |
| MS.gene058171 | MS.gene21757 | 0.846565 | 2.01E-59 | -1.69E-46 |
| MS.gene058173 | MS.gene21757 | 0.841617 | 4.26E-58 | -1.69E-46 |
| MS.gene058175 | MS.gene21757 | 0.847311 | 1.25E-59 | -1.69E-46 |
| MS.gene058176 | MS.gene21757 | 0.809822 | 1.56E-50 | -1.69E-46 |
| MS.gene058179 | MS.gene21757 | 0.843591 | 1.28E-58 | -1.69E-46 |
| MS.gene058180 | MS.gene21757 | 0.842947 | 1.89E-58 | -1.69E-46 |
| MS.gene058840 | MS.gene21757 | 0.810956 | 8.91E-51 | -1.69E-46 |
| MS.gene059037 | MS.gene21757 | 0.869821 | 2.32E-66 | -1.69E-46 |
| MS.gene059038 | MS.gene21757 | 0.844993 | 5.36E-59 | -1.69E-46 |
| MS.gene059044 | MS.gene21757 | 0.816094 | 6.60E-52 | -1.69E-46 |
| MS.gene059045 | MS.gene21757 | 0.863336 | 2.68E-64 | -1.69E-46 |
| MS.gene059697 | MS.gene21757 | 0.805067 | 1.60E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21757.t1 | MTR_5g007713 | 99.229 | 389 | 3 | 0 | 1 | 389 | 1 | 389 | 0.0 | 804 |
| MS.gene21757.t1 | MTR_5g007717 | 98.972 | 389 | 4 | 0 | 1 | 389 | 1 | 389 | 0.0 | 802 |
| MS.gene21757.t1 | MTR_1g098140 | 96.915 | 389 | 12 | 0 | 1 | 389 | 1 | 389 | 0.0 | 787 |
| MS.gene21757.t1 | MTR_1g097935 | 96.658 | 389 | 13 | 0 | 1 | 389 | 1 | 389 | 0.0 | 785 |
| MS.gene21757.t1 | MTR_1g097910 | 96.401 | 389 | 14 | 0 | 1 | 389 | 1 | 389 | 0.0 | 784 |
| MS.gene21757.t1 | MTR_5g007730 | 96.144 | 389 | 15 | 0 | 1 | 389 | 1 | 389 | 0.0 | 783 |
| MS.gene21757.t1 | MTR_7g016800 | 96.144 | 389 | 15 | 0 | 1 | 389 | 1 | 389 | 0.0 | 781 |
| MS.gene21757.t1 | MTR_7g016700 | 96.401 | 389 | 14 | 0 | 1 | 389 | 1 | 389 | 0.0 | 781 |
| MS.gene21757.t1 | MTR_7g016720 | 96.401 | 389 | 14 | 0 | 1 | 389 | 1 | 389 | 0.0 | 781 |
| MS.gene21757.t1 | MTR_7g016820 | 96.144 | 389 | 15 | 0 | 1 | 389 | 1 | 389 | 0.0 | 781 |
| MS.gene21757.t1 | MTR_5g007760 | 96.144 | 389 | 15 | 0 | 1 | 389 | 1 | 389 | 0.0 | 780 |
| MS.gene21757.t1 | MTR_7g016780 | 95.887 | 389 | 16 | 0 | 1 | 389 | 1 | 389 | 0.0 | 778 |
| MS.gene21757.t1 | MTR_3g083920 | 90.979 | 388 | 35 | 0 | 1 | 388 | 1 | 388 | 0.0 | 754 |
| MS.gene21757.t1 | MTR_3g083910 | 89.948 | 388 | 39 | 0 | 1 | 388 | 1 | 388 | 0.0 | 749 |
| MS.gene21757.t1 | MTR_2g058470 | 87.661 | 389 | 48 | 0 | 1 | 389 | 1 | 389 | 0.0 | 721 |
| MS.gene21757.t1 | MTR_3g086260 | 82.732 | 388 | 67 | 0 | 1 | 388 | 1 | 388 | 0.0 | 691 |
| MS.gene21757.t1 | MTR_7g084300 | 80.463 | 389 | 76 | 0 | 1 | 389 | 1 | 389 | 0.0 | 677 |
| MS.gene21757.t1 | MTR_7g113405 | 95.050 | 303 | 15 | 0 | 87 | 389 | 1 | 303 | 0.0 | 597 |
| MS.gene21757.t1 | MTR_3g088675 | 66.838 | 389 | 129 | 0 | 1 | 389 | 1 | 389 | 0.0 | 583 |
| MS.gene21757.t1 | MTR_5g007740 | 80.368 | 326 | 64 | 0 | 64 | 389 | 1 | 326 | 0.0 | 555 |
| MS.gene21757.t1 | MTR_5g007723 | 69.192 | 396 | 75 | 5 | 12 | 389 | 32 | 398 | 0.0 | 538 |
| MS.gene21757.t1 | MTR_5g007770 | 78.667 | 300 | 31 | 2 | 70 | 369 | 1 | 267 | 4.73e-170 | 476 |
| MS.gene21757.t1 | MTR_3g088670 | 48.974 | 390 | 185 | 6 | 10 | 388 | 2 | 388 | 5.86e-130 | 379 |
| MS.gene21757.t1 | MTR_4g075560 | 41.579 | 380 | 215 | 4 | 11 | 387 | 13 | 388 | 1.22e-101 | 306 |
| MS.gene21757.t1 | MTR_4g078730 | 36.461 | 373 | 230 | 2 | 15 | 387 | 24 | 389 | 2.59e-91 | 280 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21757.t1 | AT5G13930 | 82.474 | 388 | 67 | 1 | 3 | 389 | 8 | 395 | 0.0 | 677 |
| MS.gene21757.t1 | AT4G34850 | 40.741 | 378 | 218 | 4 | 15 | 389 | 18 | 392 | 2.08e-96 | 293 |
| MS.gene21757.t1 | AT4G00040 | 38.520 | 392 | 229 | 6 | 1 | 387 | 1 | 385 | 1.92e-94 | 288 |
| MS.gene21757.t1 | AT1G02050 | 38.462 | 390 | 227 | 7 | 2 | 387 | 12 | 392 | 5.68e-86 | 266 |
| MS.gene21757.t1 | AT4G34850 | 40.498 | 321 | 186 | 3 | 72 | 389 | 1 | 319 | 3.08e-81 | 252 |
| MS.gene21757.t1 | AT3G52160 | 27.848 | 237 | 155 | 9 | 150 | 383 | 97 | 320 | 8.52e-12 | 66.2 |
| MS.gene21757.t1 | AT3G52160 | 27.848 | 237 | 155 | 9 | 150 | 383 | 210 | 433 | 1.54e-11 | 66.2 |
Find 93 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATAGGTTTCTCAATTTC+TGG | 0.117134 | 5.2:-1978139 | None:intergenic |
| CTTGTTGGACAAGCACTCTT+TGG | 0.251490 | 5.2:+1978076 | MS.gene21757:CDS |
| GTTTCTCAATTTCTGGTATT+GGG | 0.265654 | 5.2:-1978132 | None:intergenic |
| GGTTTCTCAATTTCTGGTAT+TGG | 0.273222 | 5.2:-1978133 | None:intergenic |
| CTGATTACAACTCAATCTTT+TGG | 0.293179 | 5.2:+1978329 | MS.gene21757:CDS |
| AAGTGTGTAATCTTTGATTT+TGG | 0.298358 | 5.2:-1977809 | None:intergenic |
| AACCTATATTTGAGATGGTT+TGG | 0.308691 | 5.2:+1978152 | MS.gene21757:CDS |
| TTGTAATCAGAAATGTTTAA+TGG | 0.322975 | 5.2:-1978316 | None:intergenic |
| GCTTCGTTTGGCCAAGGACT+TGG | 0.325403 | 5.2:+1977961 | MS.gene21757:CDS |
| AGAGAAGTACTTAGTGAATA+TGG | 0.329263 | 5.2:+1978433 | MS.gene21757:CDS |
| GATCAAGTTGAACAAAAGTT+AGG | 0.336805 | 5.2:+1978382 | MS.gene21757:CDS |
| CCACAGGAGAAGGGCTTGAT+TGG | 0.336949 | 5.2:+1978530 | MS.gene21757:CDS |
| TGGGGTGTGTTGTTCGGCTT+TGG | 0.357346 | 5.2:+1978550 | MS.gene21757:CDS |
| TGAATACATGGCACCTTCAT+TGG | 0.375324 | 5.2:+1977703 | MS.gene21757:CDS |
| TACCAACTCACAAAACTCTT+AGG | 0.382277 | 5.2:+1977875 | MS.gene21757:CDS |
| CACCTTCTTAAAGATGTTCC+TGG | 0.385004 | 5.2:+1978247 | MS.gene21757:CDS |
| CTTGATTGGGGTGTGTTGTT+CGG | 0.385641 | 5.2:+1978544 | MS.gene21757:CDS |
| GTGTTGTTCGGCTTTGGACC+TGG | 0.386498 | 5.2:+1978556 | MS.gene21757:CDS |
| CCAATGGCCATGATGGTTGC+AGG | 0.395368 | 5.2:-1977288 | None:intergenic |
| CACAGGAGAAGGGCTTGATT+GGG | 0.398609 | 5.2:+1978531 | MS.gene21757:CDS |
| AGGTGGGACGGTGCTTCGTT+TGG | 0.401843 | 5.2:+1977949 | MS.gene21757:CDS |
| GGAGCTGCTGCACTCATTGT+TGG | 0.411529 | 5.2:+1978103 | MS.gene21757:CDS |
| ACTCATTTGGACAGTCTTGT+TGG | 0.418448 | 5.2:+1978061 | MS.gene21757:CDS |
| TCAACTTGATCAAGAATTGC+AGG | 0.419690 | 5.2:-1978370 | None:intergenic |
| TCAATGGCTCCCTCACTGTC+TGG | 0.428576 | 5.2:-1978193 | None:intergenic |
| GTCCAAACCATCTCAAATAT+AGG | 0.437103 | 5.2:-1978154 | None:intergenic |
| GACTTGGCTGAGAACAATAA+AGG | 0.438047 | 5.2:+1977977 | MS.gene21757:CDS |
| AATCAGAAATGTTTAATGGT+TGG | 0.447457 | 5.2:-1978312 | None:intergenic |
| ACCTTCATTGGATGCTAGGC+AGG | 0.450943 | 5.2:+1977715 | MS.gene21757:CDS |
| TTCACGAAGGTGACCGTCAA+TGG | 0.457763 | 5.2:-1978209 | None:intergenic |
| GTGCAAAACAACGGTTTCAA+TGG | 0.458999 | 5.2:-1978584 | None:intergenic |
| ATTGTTCTCAGCCAAGTCCT+TGG | 0.461734 | 5.2:-1977972 | None:intergenic |
| CACCTGCAAAACATCCTTGT+TGG | 0.464560 | 5.2:-1977931 | None:intergenic |
| CTTTGTTCAACACAATTGGC+TGG | 0.464913 | 5.2:-1977321 | None:intergenic |
| TCAAGAATTGCAGGTCCACC+TGG | 0.467633 | 5.2:-1978361 | None:intergenic |
| AGTGAAGGCTATAAAAGAAT+GGG | 0.468743 | 5.2:+1977781 | MS.gene21757:CDS |
| CGAAAGAAATCTGCTCAAGA+AGG | 0.474015 | 5.2:+1978499 | MS.gene21757:CDS |
| GCAGGACATGGTGGTGGTAG+AGG | 0.474656 | 5.2:+1977733 | MS.gene21757:CDS |
| ACCTTCTTAAAGATGTTCCT+GGG | 0.484500 | 5.2:+1978248 | MS.gene21757:CDS |
| GACGGTCACCTTCGTGAAGC+TGG | 0.488914 | 5.2:+1978214 | MS.gene21757:CDS |
| GACAGTGAGGGAGCCATTGA+CGG | 0.489536 | 5.2:+1978196 | MS.gene21757:CDS |
| TGGTCCTAGTGATACTCATT+TGG | 0.493191 | 5.2:+1978048 | MS.gene21757:CDS |
| TGTGCTTTGTTCAACACAAT+TGG | 0.494990 | 5.2:-1977325 | None:intergenic |
| CAGTGAAGGCTATAAAAGAA+TGG | 0.495251 | 5.2:+1977780 | MS.gene21757:CDS |
| GACGGTGCTTCGTTTGGCCA+AGG | 0.496087 | 5.2:+1977955 | MS.gene21757:CDS |
| GTCTTCGTCCATATGTGAAA+AGG | 0.504788 | 5.2:+1977897 | MS.gene21757:CDS |
| GGGCTTAAGACCACAGGAGA+AGG | 0.504979 | 5.2:+1978520 | MS.gene21757:CDS |
| TGAGAAACCTATATTTGAGA+TGG | 0.507221 | 5.2:+1978147 | MS.gene21757:CDS |
| TGCAGTGCCAATGGCCATGA+TGG | 0.507335 | 5.2:-1977295 | None:intergenic |
| CCTGCAACCATCATGGCCAT+TGG | 0.508648 | 5.2:+1977288 | MS.gene21757:CDS |
| TGGCACCTTCATTGGATGCT+AGG | 0.509747 | 5.2:+1977711 | MS.gene21757:CDS |
| GTGAGTTGGTAATCGGCACC+AGG | 0.519680 | 5.2:-1977863 | None:intergenic |
| CATTGATAAAGCATTGATTG+AGG | 0.521723 | 5.2:+1978285 | MS.gene21757:CDS |
| TCCTAGTGTATGTGAATACA+TGG | 0.523799 | 5.2:+1977691 | MS.gene21757:CDS |
| TGGAAAGGAGGCTGCAGTGA+AGG | 0.535095 | 5.2:+1977766 | MS.gene21757:CDS |
| GGACAAGCACTCTTTGGAGA+TGG | 0.536691 | 5.2:+1978082 | MS.gene21757:CDS |
| ATGTTCTTTGAAACAATCCC+AGG | 0.542390 | 5.2:-1978265 | None:intergenic |
| AGAAGGCCCTGCAACCATCA+TGG | 0.546762 | 5.2:+1977281 | MS.gene21757:CDS |
| TCCCAGGAACATCTTTAAGA+AGG | 0.550142 | 5.2:-1978249 | None:intergenic |
| CCAATCAAGCCCTTCTCCTG+TGG | 0.556018 | 5.2:-1978530 | None:intergenic |
| CGCAAGGCTCAAAGAGCAGA+AGG | 0.558731 | 5.2:+1977264 | MS.gene21757:CDS |
| TCCTGCCTAGCATCCAATGA+AGG | 0.559807 | 5.2:-1977716 | None:intergenic |
| CTGTCCAAATGAGTATCACT+AGG | 0.561644 | 5.2:-1978052 | None:intergenic |
| GGCTGGATTTGCAGTGCCAA+TGG | 0.564489 | 5.2:-1977304 | None:intergenic |
| TTCACTAAGTACTTCTCTAG+TGG | 0.572078 | 5.2:-1978428 | None:intergenic |
| TGCTAGGCAGGACATGGTGG+TGG | 0.573568 | 5.2:+1977727 | MS.gene21757:CDS |
| GTGGTAGAGGTACCTAGACT+TGG | 0.577024 | 5.2:+1977746 | MS.gene21757:CDS |
| ACGGTTTCAATGGTAAGTCC+AGG | 0.578176 | 5.2:-1978574 | None:intergenic |
| CAATGGCCATGATGGTTGCA+GGG | 0.578454 | 5.2:-1977287 | None:intergenic |
| GTGATAAATCTATGATCAAG+AGG | 0.584564 | 5.2:+1977630 | MS.gene21757:CDS |
| ATTGGATGCTAGGCAGGACA+TGG | 0.585693 | 5.2:+1977721 | MS.gene21757:CDS |
| GAAAGAAATCTGCTCAAGAA+GGG | 0.590492 | 5.2:+1978500 | MS.gene21757:CDS |
| AGAGGTACCTAGACTTGGAA+AGG | 0.590872 | 5.2:+1977751 | MS.gene21757:CDS |
| ACAAGTGGTGTGGACATGCC+TGG | 0.595968 | 5.2:+1977845 | MS.gene21757:CDS |
| CAAGAAGGGCTTAAGACCAC+AGG | 0.597698 | 5.2:+1978514 | MS.gene21757:CDS |
| GCAGCCTCCTTTCCAAGTCT+AGG | 0.600913 | 5.2:-1977758 | None:intergenic |
| AGGCATGTCCACACCACTTG+TGG | 0.604163 | 5.2:-1977843 | None:intergenic |
| CAATAAAGGTGCTCGTGTGT+TGG | 0.608320 | 5.2:+1977991 | MS.gene21757:CDS |
| GGCTTAAGACCACAGGAGAA+GGG | 0.617893 | 5.2:+1978521 | MS.gene21757:CDS |
| ACAGGAGAAGGGCTTGATTG+GGG | 0.623900 | 5.2:+1978532 | MS.gene21757:CDS |
| AATGAGTATCACTAGGACCA+CGG | 0.635157 | 5.2:-1978045 | None:intergenic |
| AACAATTGCTCCAGACAGTG+AGG | 0.638797 | 5.2:+1978183 | MS.gene21757:CDS |
| CAAGAATTGCAGGTCCACCT+GGG | 0.641015 | 5.2:-1978360 | None:intergenic |
| GAGTGTATCTGAAATTCGCA+AGG | 0.641296 | 5.2:+1977248 | MS.gene21757:CDS |
| GTTACTGCTGTGACATTCCG+TGG | 0.652143 | 5.2:+1978028 | MS.gene21757:CDS |
| ACAATTGCTCCAGACAGTGA+GGG | 0.658063 | 5.2:+1978184 | MS.gene21757:CDS |
| AGCCACACTGTGCAAAACAA+CGG | 0.665293 | 5.2:-1978593 | None:intergenic |
| GGTACCTAGACTTGGAAAGG+AGG | 0.665959 | 5.2:+1977754 | MS.gene21757:CDS |
| GTGAAGGCTATAAAAGAATG+GGG | 0.673012 | 5.2:+1977782 | MS.gene21757:CDS |
| GCCATGTATTCACATACACT+AGG | 0.680230 | 5.2:-1977692 | None:intergenic |
| GGATGCTAGGCAGGACATGG+TGG | 0.681727 | 5.2:+1977724 | MS.gene21757:CDS |
| ATGTTAGACCAGCTTCACGA+AGG | 0.697645 | 5.2:-1978222 | None:intergenic |
| AGGTATATGATGTACCAACA+AGG | 0.699849 | 5.2:+1977917 | MS.gene21757:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACCAATCAAATAATAAT+AGG | - | chr5.2:1977558-1977577 | None:intergenic | 15.0% |
| !! | AAGACCTATTATTATTTGAT+TGG | + | chr5.2:1977551-1977570 | MS.gene21757:intron | 20.0% |
| !! | CATTTCTTTATAACTATTTC+AGG | + | chr5.2:1977608-1977627 | MS.gene21757:intron | 20.0% |
| !! | TTGTAATCAGAAATGTTTAA+TGG | - | chr5.2:1978319-1978338 | None:intergenic | 20.0% |
| !!! | ATAATTTGTATCAATTTGGT+AGG | - | chr5.2:1977522-1977541 | None:intergenic | 20.0% |
| !!! | GCAAATAATTTGTATCAATT+TGG | - | chr5.2:1977526-1977545 | None:intergenic | 20.0% |
| ! | AATATAGGTTTCTCAATTTC+TGG | - | chr5.2:1978142-1978161 | None:intergenic | 25.0% |
| ! | AATCAGAAATGTTTAATGGT+TGG | - | chr5.2:1978315-1978334 | None:intergenic | 25.0% |
| !! | ATCATATACCTTTTCACATA+TGG | - | chr5.2:1977908-1977927 | None:intergenic | 25.0% |
| !! | GACATTAGTACAACAATTTT+TGG | - | chr5.2:1977589-1977608 | None:intergenic | 25.0% |
| !! | TTAATATTTTGTACCACAAG+TGG | + | chr5.2:1977830-1977849 | MS.gene21757:CDS | 25.0% |
| !! | TTGAAATTTTTCTTTGAGCT+CGG | - | chr5.2:1977394-1977413 | None:intergenic | 25.0% |
| !!! | AAGTGTGTAATCTTTGATTT+TGG | - | chr5.2:1977812-1977831 | None:intergenic | 25.0% |
| !!! | GTGATTTTAAAGTAGAAATC+AGG | - | chr5.2:1977354-1977373 | None:intergenic | 25.0% |
| AGTGAAGGCTATAAAAGAAT+GGG | + | chr5.2:1977781-1977800 | MS.gene21757:CDS | 30.0% | |
| GTGATAAATCTATGATCAAG+AGG | + | chr5.2:1977630-1977649 | MS.gene21757:CDS | 30.0% | |
| TGAGAAACCTATATTTGAGA+TGG | + | chr5.2:1978147-1978166 | MS.gene21757:CDS | 30.0% | |
| ! | AACCTATATTTGAGATGGTT+TGG | + | chr5.2:1978152-1978171 | MS.gene21757:CDS | 30.0% |
| ! | CTGATTACAACTCAATCTTT+TGG | + | chr5.2:1978329-1978348 | MS.gene21757:CDS | 30.0% |
| !! | AGAGAAGTACTTAGTGAATA+TGG | + | chr5.2:1978433-1978452 | MS.gene21757:CDS | 30.0% |
| !! | CATTGATAAAGCATTGATTG+AGG | + | chr5.2:1978285-1978304 | MS.gene21757:CDS | 30.0% |
| !! | GATCAAGTTGAACAAAAGTT+AGG | + | chr5.2:1978382-1978401 | MS.gene21757:CDS | 30.0% |
| !! | GTGTAATCTTTGATTTTGGT+TGG | - | chr5.2:1977808-1977827 | None:intergenic | 30.0% |
| !! | GTTTCTCAATTTCTGGTATT+GGG | - | chr5.2:1978135-1978154 | None:intergenic | 30.0% |
| ACCTTCTTAAAGATGTTCCT+GGG | + | chr5.2:1978248-1978267 | MS.gene21757:CDS | 35.0% | |
| AGGTATATGATGTACCAACA+AGG | + | chr5.2:1977917-1977936 | MS.gene21757:CDS | 35.0% | |
| CAGTGAAGGCTATAAAAGAA+TGG | + | chr5.2:1977780-1977799 | MS.gene21757:CDS | 35.0% | |
| GAAAGAAATCTGCTCAAGAA+GGG | + | chr5.2:1978500-1978519 | MS.gene21757:CDS | 35.0% | |
| GGTAGGCAAATTTCATATCA+CGG | - | chr5.2:1977505-1977524 | None:intergenic | 35.0% | |
| GTAGGCAAATTTCATATCAC+GGG | - | chr5.2:1977504-1977523 | None:intergenic | 35.0% | |
| GTCCAAACCATCTCAAATAT+AGG | - | chr5.2:1978157-1978176 | None:intergenic | 35.0% | |
| GTGAAGGCTATAAAAGAATG+GGG | + | chr5.2:1977782-1977801 | MS.gene21757:CDS | 35.0% | |
| TACCAACTCACAAAACTCTT+AGG | + | chr5.2:1977875-1977894 | MS.gene21757:CDS | 35.0% | |
| TCAACTTGATCAAGAATTGC+AGG | - | chr5.2:1978373-1978392 | None:intergenic | 35.0% | |
| TCCTAGTGTATGTGAATACA+TGG | + | chr5.2:1977691-1977710 | MS.gene21757:CDS | 35.0% | |
| TTCACTAAGTACTTCTCTAG+TGG | - | chr5.2:1978431-1978450 | None:intergenic | 35.0% | |
| ! | TGTGCTTTGTTCAACACAAT+TGG | - | chr5.2:1977328-1977347 | None:intergenic | 35.0% |
| !! | ATGTTCTTTGAAACAATCCC+AGG | - | chr5.2:1978268-1978287 | None:intergenic | 35.0% |
| !! | GGTTTCTCAATTTCTGGTAT+TGG | - | chr5.2:1978136-1978155 | None:intergenic | 35.0% |
| !!! | GAGTTTTGTGAGTTGGTAAT+CGG | - | chr5.2:1977873-1977892 | None:intergenic | 35.0% |
| AATGAGTATCACTAGGACCA+CGG | - | chr5.2:1978048-1978067 | None:intergenic | 40.0% | |
| CACCTTCTTAAAGATGTTCC+TGG | + | chr5.2:1978247-1978266 | MS.gene21757:CDS | 40.0% | |
| CGAAAGAAATCTGCTCAAGA+AGG | + | chr5.2:1978499-1978518 | MS.gene21757:CDS | 40.0% | |
| CTGTCCAAATGAGTATCACT+AGG | - | chr5.2:1978055-1978074 | None:intergenic | 40.0% | |
| CTTTGTTCAACACAATTGGC+TGG | - | chr5.2:1977324-1977343 | None:intergenic | 40.0% | |
| GACTTGGCTGAGAACAATAA+AGG | + | chr5.2:1977977-1977996 | MS.gene21757:CDS | 40.0% | |
| GCCATGTATTCACATACACT+AGG | - | chr5.2:1977695-1977714 | None:intergenic | 40.0% | |
| GTCTTCGTCCATATGTGAAA+AGG | + | chr5.2:1977897-1977916 | MS.gene21757:CDS | 40.0% | |
| GTGCAAAACAACGGTTTCAA+TGG | - | chr5.2:1978587-1978606 | None:intergenic | 40.0% | |
| TGAATACATGGCACCTTCAT+TGG | + | chr5.2:1977703-1977722 | MS.gene21757:CDS | 40.0% | |
| TGGTCCTAGTGATACTCATT+TGG | + | chr5.2:1978048-1978067 | MS.gene21757:CDS | 40.0% | |
| ! | AACAAGGATGTTTTGCAGGT+GGG | + | chr5.2:1977933-1977952 | MS.gene21757:CDS | 40.0% |
| ! | ACTCATTTGGACAGTCTTGT+TGG | + | chr5.2:1978061-1978080 | MS.gene21757:CDS | 40.0% |
| ! | ATTTTGTACCACAAGTGGTG+TGG | + | chr5.2:1977835-1977854 | MS.gene21757:CDS | 40.0% |
| ! | CTAGTGGCTTTCATCTTTTC+AGG | - | chr5.2:1978415-1978434 | None:intergenic | 40.0% |
| ! | GAGTGTATCTGAAATTCGCA+AGG | + | chr5.2:1977248-1977267 | MS.gene21757:CDS | 40.0% |
| ! | TACCAACAAGGATGTTTTGC+AGG | + | chr5.2:1977929-1977948 | MS.gene21757:CDS | 40.0% |
| ! | TCCCAGGAACATCTTTAAGA+AGG | - | chr5.2:1978252-1978271 | None:intergenic | 40.0% |
| !! | GACCTAAGAGTTTTGTGAGT+TGG | - | chr5.2:1977880-1977899 | None:intergenic | 40.0% |
| AACAATTGCTCCAGACAGTG+AGG | + | chr5.2:1978183-1978202 | MS.gene21757:CDS | 45.0% | |
| ACAATTGCTCCAGACAGTGA+GGG | + | chr5.2:1978184-1978203 | MS.gene21757:CDS | 45.0% | |
| ACGGTTTCAATGGTAAGTCC+AGG | - | chr5.2:1978577-1978596 | None:intergenic | 45.0% | |
| AGCCACACTGTGCAAAACAA+CGG | - | chr5.2:1978596-1978615 | None:intergenic | 45.0% | |
| ATGTTAGACCAGCTTCACGA+AGG | - | chr5.2:1978225-1978244 | None:intergenic | 45.0% | |
| ATTGTTCTCAGCCAAGTCCT+TGG | - | chr5.2:1977975-1977994 | None:intergenic | 45.0% | |
| CACCTGCAAAACATCCTTGT+TGG | - | chr5.2:1977934-1977953 | None:intergenic | 45.0% | |
| CTTGTTGGACAAGCACTCTT+TGG | + | chr5.2:1978076-1978095 | MS.gene21757:CDS | 45.0% | |
| ! | ATCTTTTGGATTGCTCACCC+AGG | + | chr5.2:1978343-1978362 | MS.gene21757:CDS | 45.0% |
| ! | CAACAAGGATGTTTTGCAGG+TGG | + | chr5.2:1977932-1977951 | MS.gene21757:CDS | 45.0% |
| ! | CTTGATTGGGGTGTGTTGTT+CGG | + | chr5.2:1978544-1978563 | MS.gene21757:CDS | 45.0% |
| !! | AACCGTTGTTTTGCACAGTG+TGG | + | chr5.2:1978591-1978610 | MS.gene21757:CDS | 45.0% |
| !! | AGAGGTACCTAGACTTGGAA+AGG | + | chr5.2:1977751-1977770 | MS.gene21757:CDS | 45.0% |
| !! | CAATAAAGGTGCTCGTGTGT+TGG | + | chr5.2:1977991-1978010 | MS.gene21757:CDS | 45.0% |
| ACAGGAGAAGGGCTTGATTG+GGG | + | chr5.2:1978532-1978551 | MS.gene21757:CDS | 50.0% | |
| ACCTTCATTGGATGCTAGGC+AGG | + | chr5.2:1977715-1977734 | MS.gene21757:CDS | 50.0% | |
| ATTGGATGCTAGGCAGGACA+TGG | + | chr5.2:1977721-1977740 | MS.gene21757:CDS | 50.0% | |
| CAAGAAGGGCTTAAGACCAC+AGG | + | chr5.2:1978514-1978533 | MS.gene21757:CDS | 50.0% | |
| CAAGAATTGCAGGTCCACCT+GGG | - | chr5.2:1978363-1978382 | None:intergenic | 50.0% | |
| CAATGGCCATGATGGTTGCA+GGG | - | chr5.2:1977290-1977309 | None:intergenic | 50.0% | |
| CACAGGAGAAGGGCTTGATT+GGG | + | chr5.2:1978531-1978550 | MS.gene21757:CDS | 50.0% | |
| GGCTTAAGACCACAGGAGAA+GGG | + | chr5.2:1978521-1978540 | MS.gene21757:CDS | 50.0% | |
| GGTACCTAGACTTGGAAAGG+AGG | + | chr5.2:1977754-1977773 | MS.gene21757:CDS | 50.0% | |
| GTTACTGCTGTGACATTCCG+TGG | + | chr5.2:1978028-1978047 | MS.gene21757:CDS | 50.0% | |
| TCAAGAATTGCAGGTCCACC+TGG | - | chr5.2:1978364-1978383 | None:intergenic | 50.0% | |
| TCCTGCCTAGCATCCAATGA+AGG | - | chr5.2:1977719-1977738 | None:intergenic | 50.0% | |
| TGGCACCTTCATTGGATGCT+AGG | + | chr5.2:1977711-1977730 | MS.gene21757:CDS | 50.0% | |
| TTCACGAAGGTGACCGTCAA+TGG | - | chr5.2:1978212-1978231 | None:intergenic | 50.0% | |
| ! | AGGATGTTTTGCAGGTGGGA+CGG | + | chr5.2:1977937-1977956 | MS.gene21757:CDS | 50.0% |
| ! | GGACAAGCACTCTTTGGAGA+TGG | + | chr5.2:1978082-1978101 | MS.gene21757:CDS | 50.0% |
| ! | TTTTGGATTGCTCACCCAGG+TGG | + | chr5.2:1978346-1978365 | MS.gene21757:CDS | 50.0% |
| !! | GTGGTAGAGGTACCTAGACT+TGG | + | chr5.2:1977746-1977765 | MS.gene21757:CDS | 50.0% |
| ACAAGTGGTGTGGACATGCC+TGG | + | chr5.2:1977845-1977864 | MS.gene21757:CDS | 55.0% | |
| AGAAGGCCCTGCAACCATCA+TGG | + | chr5.2:1977281-1977300 | MS.gene21757:CDS | 55.0% | |
| AGGCATGTCCACACCACTTG+TGG | - | chr5.2:1977846-1977865 | None:intergenic | 55.0% | |
| CCAATCAAGCCCTTCTCCTG+TGG | - | chr5.2:1978533-1978552 | None:intergenic | 55.0% | |
| CCAATGGCCATGATGGTTGC+AGG | - | chr5.2:1977291-1977310 | None:intergenic | 55.0% | |
| CCACAGGAGAAGGGCTTGAT+TGG | + | chr5.2:1978530-1978549 | MS.gene21757:CDS | 55.0% | |
| CCTGCAACCATCATGGCCAT+TGG | + | chr5.2:1977288-1977307 | MS.gene21757:CDS | 55.0% | |
| CGCAAGGCTCAAAGAGCAGA+AGG | + | chr5.2:1977264-1977283 | MS.gene21757:CDS | 55.0% | |
| GACAGTGAGGGAGCCATTGA+CGG | + | chr5.2:1978196-1978215 | MS.gene21757:CDS | 55.0% | |
| GCAGCCTCCTTTCCAAGTCT+AGG | - | chr5.2:1977761-1977780 | None:intergenic | 55.0% | |
| GCTTCGTTTGGCCAAGGACT+TGG | + | chr5.2:1977961-1977980 | MS.gene21757:CDS | 55.0% | |
| GGAGCTGCTGCACTCATTGT+TGG | + | chr5.2:1978103-1978122 | MS.gene21757:CDS | 55.0% | |
| GGCTGGATTTGCAGTGCCAA+TGG | - | chr5.2:1977307-1977326 | None:intergenic | 55.0% | |
| GGGCTTAAGACCACAGGAGA+AGG | + | chr5.2:1978520-1978539 | MS.gene21757:CDS | 55.0% | |
| TCAATGGCTCCCTCACTGTC+TGG | - | chr5.2:1978196-1978215 | None:intergenic | 55.0% | |
| TGCAGTGCCAATGGCCATGA+TGG | - | chr5.2:1977298-1977317 | None:intergenic | 55.0% | |
| TGGAAAGGAGGCTGCAGTGA+AGG | + | chr5.2:1977766-1977785 | MS.gene21757:CDS | 55.0% | |
| ! | TGGGGTGTGTTGTTCGGCTT+TGG | + | chr5.2:1978550-1978569 | MS.gene21757:CDS | 55.0% |
| !! | GTGAGTTGGTAATCGGCACC+AGG | - | chr5.2:1977866-1977885 | None:intergenic | 55.0% |
| !! | GTGTTGTTCGGCTTTGGACC+TGG | + | chr5.2:1978556-1978575 | MS.gene21757:CDS | 55.0% |
| AGGTGGGACGGTGCTTCGTT+TGG | + | chr5.2:1977949-1977968 | MS.gene21757:CDS | 60.0% | |
| GACGGTCACCTTCGTGAAGC+TGG | + | chr5.2:1978214-1978233 | MS.gene21757:CDS | 60.0% | |
| GACGGTGCTTCGTTTGGCCA+AGG | + | chr5.2:1977955-1977974 | MS.gene21757:CDS | 60.0% | |
| GGATGCTAGGCAGGACATGG+TGG | + | chr5.2:1977724-1977743 | MS.gene21757:CDS | 60.0% | |
| TGCTAGGCAGGACATGGTGG+TGG | + | chr5.2:1977727-1977746 | MS.gene21757:CDS | 60.0% | |
| !! | GCAGGACATGGTGGTGGTAG+AGG | + | chr5.2:1977733-1977752 | MS.gene21757:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 1977243 | 1978621 | 1977243 | ID=MS.gene21757 |
| chr5.2 | mRNA | 1977243 | 1978621 | 1977243 | ID=MS.gene21757.t1;Parent=MS.gene21757 |
| chr5.2 | exon | 1977243 | 1977420 | 1977243 | ID=MS.gene21757.t1.exon1;Parent=MS.gene21757.t1 |
| chr5.2 | CDS | 1977243 | 1977420 | 1977243 | ID=cds.MS.gene21757.t1;Parent=MS.gene21757.t1 |
| chr5.2 | exon | 1977630 | 1978621 | 1977630 | ID=MS.gene21757.t1.exon2;Parent=MS.gene21757.t1 |
| chr5.2 | CDS | 1977630 | 1978621 | 1977630 | ID=cds.MS.gene21757.t1;Parent=MS.gene21757.t1 |
| Gene Sequence |
| Protein sequence |
