Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23012.t1 | XP_003625864.1 | 93.7 | 191 | 11 | 1 | 1 | 190 | 1 | 191 | 1.80E-79 | 305.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23012.t1 | A7PTY8 | 44.4 | 196 | 98 | 3 | 1 | 185 | 1 | 196 | 4.5e-31 | 136.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23012.t1 | G7KQZ0 | 93.7 | 191 | 11 | 1 | 1 | 190 | 1 | 191 | 1.3e-79 | 305.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene23012 | 0.816224 | 6.17E-52 | -1.69E-46 |
| MS.gene049341 | MS.gene23012 | 0.803405 | 3.54E-49 | -1.69E-46 |
| MS.gene049382 | MS.gene23012 | 0.813944 | 1.98E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene23012 | 0.878274 | 3.21E-69 | -1.69E-46 |
| MS.gene050206 | MS.gene23012 | 0.810228 | 1.28E-50 | -1.69E-46 |
| MS.gene050563 | MS.gene23012 | 0.805775 | 1.13E-49 | -1.69E-46 |
| MS.gene050584 | MS.gene23012 | 0.908682 | 1.31E-81 | -1.69E-46 |
| MS.gene050585 | MS.gene23012 | 0.880756 | 4.22E-70 | -1.69E-46 |
| MS.gene050586 | MS.gene23012 | 0.860673 | 1.75E-63 | -1.69E-46 |
| MS.gene050587 | MS.gene23012 | 0.842826 | 2.04E-58 | -1.69E-46 |
| MS.gene050807 | MS.gene23012 | 0.845659 | 3.54E-59 | -1.69E-46 |
| MS.gene050808 | MS.gene23012 | 0.819197 | 1.32E-52 | -1.69E-46 |
| MS.gene050815 | MS.gene23012 | 0.812881 | 3.39E-51 | -1.69E-46 |
| MS.gene05143 | MS.gene23012 | 0.829745 | 4.34E-55 | -1.69E-46 |
| MS.gene051626 | MS.gene23012 | 0.866944 | 1.97E-65 | -1.69E-46 |
| MS.gene051789 | MS.gene23012 | 0.965044 | 4.26E-124 | -1.69E-46 |
| MS.gene052142 | MS.gene23012 | 0.86726 | 1.56E-65 | -1.69E-46 |
| MS.gene052178 | MS.gene23012 | 0.802656 | 5.06E-49 | -1.69E-46 |
| MS.gene052338 | MS.gene23012 | 0.802124 | 6.51E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene23012 | 0.814179 | 1.76E-51 | -1.69E-46 |
| MS.gene052698 | MS.gene23012 | 0.803723 | 3.04E-49 | -1.69E-46 |
| MS.gene052967 | MS.gene23012 | 0.863855 | 1.85E-64 | -1.69E-46 |
| MS.gene053074 | MS.gene23012 | 0.915194 | 7.86E-85 | -1.69E-46 |
| MS.gene053204 | MS.gene23012 | 0.850378 | 1.77E-60 | -1.69E-46 |
| MS.gene053383 | MS.gene23012 | 0.825656 | 4.16E-54 | -1.69E-46 |
| MS.gene053563 | MS.gene23012 | 0.841417 | 4.81E-58 | -1.69E-46 |
| MS.gene053630 | MS.gene23012 | 0.837515 | 4.97E-57 | -1.69E-46 |
| MS.gene054184 | MS.gene23012 | 0.824485 | 7.87E-54 | -1.69E-46 |
| MS.gene054185 | MS.gene23012 | 0.828872 | 7.06E-55 | -1.69E-46 |
| MS.gene054214 | MS.gene23012 | 0.827285 | 1.70E-54 | -1.69E-46 |
| MS.gene05456 | MS.gene23012 | 0.902617 | 8.07E-79 | -1.69E-46 |
| MS.gene054596 | MS.gene23012 | 0.877011 | 8.84E-69 | -1.69E-46 |
| MS.gene055133 | MS.gene23012 | 0.813627 | 2.33E-51 | -1.69E-46 |
| MS.gene055207 | MS.gene23012 | 0.88273 | 8.15E-71 | -1.69E-46 |
| MS.gene055359 | MS.gene23012 | 0.843507 | 1.34E-58 | -1.69E-46 |
| MS.gene056069 | MS.gene23012 | -0.830005 | 3.75E-55 | -1.69E-46 |
| MS.gene056760 | MS.gene23012 | 0.818936 | 1.51E-52 | -1.69E-46 |
| MS.gene057754 | MS.gene23012 | 0.820417 | 6.94E-53 | -1.69E-46 |
| MS.gene058168 | MS.gene23012 | 0.85464 | 1.08E-61 | -1.69E-46 |
| MS.gene059006 | MS.gene23012 | 0.938797 | 3.71E-99 | -1.69E-46 |
| MS.gene059124 | MS.gene23012 | 0.819226 | 1.30E-52 | -1.69E-46 |
| MS.gene059228 | MS.gene23012 | 0.827836 | 1.26E-54 | -1.69E-46 |
| MS.gene060476 | MS.gene23012 | 0.812592 | 3.92E-51 | -1.69E-46 |
| MS.gene060513 | MS.gene23012 | 0.832455 | 9.36E-56 | -1.69E-46 |
| MS.gene060691 | MS.gene23012 | 0.818336 | 2.07E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23012.t1 | MTR_7g108130 | 95.288 | 191 | 8 | 1 | 1 | 190 | 1 | 191 | 2.94e-131 | 366 |
| MS.gene23012.t1 | MTR_4g118810 | 42.373 | 177 | 91 | 2 | 1 | 166 | 1 | 177 | 5.95e-44 | 145 |
| MS.gene23012.t1 | MTR_2g020060 | 44.242 | 165 | 85 | 2 | 31 | 189 | 26 | 189 | 8.68e-39 | 131 |
| MS.gene23012.t1 | MTR_4g118800 | 34.783 | 161 | 95 | 4 | 26 | 181 | 26 | 181 | 2.74e-22 | 89.4 |
| MS.gene23012.t1 | MTR_8g089300 | 30.409 | 171 | 109 | 4 | 2 | 166 | 4 | 170 | 3.15e-20 | 84.0 |
| MS.gene23012.t1 | MTR_4g081880 | 30.189 | 159 | 106 | 3 | 21 | 177 | 22 | 177 | 1.20e-17 | 77.0 |
| MS.gene23012.t1 | MTR_0097s0070 | 29.452 | 146 | 97 | 2 | 45 | 184 | 44 | 189 | 1.02e-15 | 72.4 |
| MS.gene23012.t1 | MTR_5g041900 | 29.221 | 154 | 104 | 3 | 26 | 177 | 26 | 176 | 7.89e-15 | 69.7 |
| MS.gene23012.t1 | MTR_0004s0210 | 28.571 | 161 | 105 | 3 | 21 | 181 | 1 | 151 | 8.87e-15 | 68.9 |
| MS.gene23012.t1 | MTR_7g083120 | 29.787 | 141 | 93 | 3 | 31 | 169 | 33 | 169 | 1.34e-13 | 66.2 |
| MS.gene23012.t1 | MTR_7g011090 | 28.125 | 160 | 110 | 3 | 20 | 177 | 20 | 176 | 1.51e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23012.t1 | AT4G15630 | 39.267 | 191 | 109 | 2 | 1 | 185 | 1 | 190 | 1.79e-42 | 141 |
| MS.gene23012.t1 | AT4G15620 | 37.895 | 190 | 111 | 2 | 1 | 184 | 1 | 189 | 3.20e-39 | 132 |
| MS.gene23012.t1 | AT4G15610 | 30.994 | 171 | 114 | 3 | 1 | 167 | 1 | 171 | 3.69e-23 | 91.7 |
| MS.gene23012.t1 | AT3G06390 | 34.074 | 135 | 85 | 2 | 29 | 159 | 38 | 172 | 1.59e-17 | 77.0 |
| MS.gene23012.t1 | AT5G44550 | 32.500 | 160 | 100 | 3 | 32 | 184 | 22 | 180 | 2.22e-16 | 73.9 |
| MS.gene23012.t1 | AT4G15610 | 31.532 | 111 | 70 | 2 | 63 | 167 | 5 | 115 | 2.53e-16 | 72.4 |
| MS.gene23012.t1 | AT4G20390 | 36.090 | 133 | 79 | 3 | 32 | 158 | 22 | 154 | 9.05e-16 | 72.4 |
| MS.gene23012.t1 | AT5G15290 | 27.891 | 147 | 99 | 3 | 21 | 164 | 21 | 163 | 1.92e-15 | 71.2 |
| MS.gene23012.t1 | AT1G14160 | 28.221 | 163 | 114 | 3 | 26 | 187 | 49 | 209 | 1.43e-12 | 63.9 |
| MS.gene23012.t1 | AT4G16442 | 27.119 | 177 | 116 | 4 | 16 | 185 | 1 | 171 | 2.83e-11 | 60.1 |
| MS.gene23012.t1 | AT2G27370 | 29.193 | 161 | 109 | 3 | 26 | 184 | 60 | 217 | 6.05e-11 | 59.7 |
Find 33 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTACTATCATTGTGGGTTT+TGG | 0.265618 | 7.2:-6789961 | MS.gene23012:CDS |
| GATGTGTTGCTTAGGGTTCT+TGG | 0.291243 | 7.2:-6790003 | MS.gene23012:CDS |
| CATCCACACTTGTCTTTGAT+TGG | 0.294482 | 7.2:+6790079 | None:intergenic |
| TTCATATGCTGCAATTTCTT+TGG | 0.300522 | 7.2:-6788618 | MS.gene23012:CDS |
| GAGAGTGAGCCACAAGTAAA+AGG | 0.319910 | 7.2:+6788357 | None:intergenic |
| GCTTTGGTCCTATCTATCAT+TGG | 0.335452 | 7.2:-6788392 | MS.gene23012:CDS |
| CACTGCACCAGCAGCTCCAT+TGG | 0.363063 | 7.2:+6788502 | None:intergenic |
| TCTAGTTTGATCTATAATAA+TGG | 0.389846 | 7.2:+6788324 | None:intergenic |
| AATGCTAGACCTAGTTATAA+TGG | 0.390891 | 7.2:-6788540 | MS.gene23012:CDS |
| GTGTTTATGATGTGTTGCTT+AGG | 0.399152 | 7.2:-6790011 | MS.gene23012:CDS |
| CTCACTGCTACTATCATTGT+GGG | 0.403424 | 7.2:-6789967 | MS.gene23012:CDS |
| GCTGGTGCAGTGGGAGTGTT+AGG | 0.413062 | 7.2:-6788491 | MS.gene23012:CDS |
| TTCTCAGCCAATGGAGCTGC+TGG | 0.424568 | 7.2:-6788509 | MS.gene23012:CDS |
| TCACAGCGATGTGAAGGTTA+TGG | 0.427097 | 7.2:-6790052 | MS.gene23012:CDS |
| AACAGTCATGTGACGACAAT+AGG | 0.431776 | 7.2:+6788415 | None:intergenic |
| TGTTTATGATGTGTTGCTTA+GGG | 0.433057 | 7.2:-6790010 | MS.gene23012:CDS |
| CAGTGGAACCAATGATAGAT+AGG | 0.464992 | 7.2:+6788384 | None:intergenic |
| TCGTCACATGACTGTTGCTT+TGG | 0.473880 | 7.2:-6788408 | MS.gene23012:CDS |
| TTCTTGGTGACAAATGCTAT+AGG | 0.474689 | 7.2:-6788644 | MS.gene23012:CDS |
| TCTCACTGCTACTATCATTG+TGG | 0.489600 | 7.2:-6789968 | MS.gene23012:CDS |
| AAGGAAACTCGCACGTGCAA+TGG | 0.499701 | 7.2:-6788463 | MS.gene23012:CDS |
| CAATCAAAGACAAGTGTGGA+TGG | 0.535899 | 7.2:-6790078 | MS.gene23012:CDS |
| GCATTACTCTTCTCAGCCAA+TGG | 0.539824 | 7.2:-6788518 | MS.gene23012:CDS |
| AATGGAGCTGCTGGTGCAGT+GGG | 0.549722 | 7.2:-6788500 | MS.gene23012:CDS |
| ATTCAAAGCTACTGCTAAGT+GGG | 0.553173 | 7.2:-6789902 | MS.gene23012:CDS |
| CAATGGAGCTGCTGGTGCAG+TGG | 0.564486 | 7.2:-6788501 | MS.gene23012:CDS |
| AATTCAAAGCTACTGCTAAG+TGG | 0.570996 | 7.2:-6789903 | MS.gene23012:CDS |
| GTGGGAGTGTTAGGACAGAA+AGG | 0.578933 | 7.2:-6788482 | MS.gene23012:CDS |
| TCAACAATTGCAAGAACCAG+TGG | 0.593273 | 7.2:-6788590 | MS.gene23012:CDS |
| TGGAGTTCACAGCGATGTGA+AGG | 0.594175 | 7.2:-6790058 | MS.gene23012:CDS |
| AGAGTAATGCCATTATAACT+AGG | 0.597714 | 7.2:+6788531 | None:intergenic |
| AAACCAATCAAAGACAAGTG+TGG | 0.653780 | 7.2:-6790082 | MS.gene23012:CDS |
| CACAAGTAAAAGGAAGACAG+TGG | 0.729118 | 7.2:+6788367 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTACTAAAAATAAAATAA+AGG | + | chr7.2:6789045-6789064 | None:intergenic | 10.0% |
| !! | TTTAAAAAATTGTAAAAGAA+AGG | + | chr7.2:6788784-6788803 | None:intergenic | 10.0% |
| !!! | TTTTTCTTCAAAAAAATTAA+TGG | + | chr7.2:6789361-6789380 | None:intergenic | 10.0% |
| !! | AAAAAAATATAAAACAAACG+AGG | + | chr7.2:6789698-6789717 | None:intergenic | 15.0% |
| !! | AATACATTTATATTCCAAAT+AGG | + | chr7.2:6789510-6789529 | None:intergenic | 15.0% |
| !! | ATACATTTATATTCCAAATA+GGG | + | chr7.2:6789509-6789528 | None:intergenic | 15.0% |
| !! | TTCATTAACAAATGTTATAA+GGG | - | chr7.2:6788723-6788742 | MS.gene23012:intron | 15.0% |
| !! | TTTCATTAACAAATGTTATA+AGG | - | chr7.2:6788722-6788741 | MS.gene23012:intron | 15.0% |
| !!! | AAATGTTTTAAGAAAGTAAA+TGG | - | chr7.2:6788968-6788987 | MS.gene23012:intron | 15.0% |
| !!! | ATATATTGATTGATTACTAA+TGG | + | chr7.2:6789133-6789152 | None:intergenic | 15.0% |
| !!! | ATTTAGTTTTTGAAATGTTA+AGG | - | chr7.2:6788598-6788617 | MS.gene23012:CDS | 15.0% |
| !!! | GTATATAGTTTTGAAAATTT+AGG | + | chr7.2:6788946-6788965 | None:intergenic | 15.0% |
| !!! | TATAATATGTTAGTTGATAA+CGG | - | chr7.2:6789064-6789083 | MS.gene23012:intron | 15.0% |
| !!! | TATTTGGAATATAAATGTAT+TGG | - | chr7.2:6789509-6789528 | MS.gene23012:intron | 15.0% |
| !!! | TATTTTTTTGAAAATGTTTC+TGG | - | chr7.2:6788844-6788863 | MS.gene23012:intron | 15.0% |
| !!! | TTTAGTTTTTGAAATGTTAA+GGG | - | chr7.2:6788599-6788618 | MS.gene23012:CDS | 15.0% |
| !! | AAAAAATTGTAAAAGAAAGG+TGG | + | chr7.2:6788781-6788800 | None:intergenic | 20.0% |
| !! | AAGATAATGTAGTGAATATT+TGG | + | chr7.2:6788894-6788913 | None:intergenic | 20.0% |
| !! | AGATAATGTAGTGAATATTT+GGG | + | chr7.2:6788893-6788912 | None:intergenic | 20.0% |
| !! | ATAAATAAAGTGATGTTGAT+TGG | + | chr7.2:6789463-6789482 | None:intergenic | 20.0% |
| !! | TAATGACAGACTTTAATTAA+TGG | + | chr7.2:6789391-6789410 | None:intergenic | 20.0% |
| !! | TCAAAAACTAAATTATCTAG+TGG | + | chr7.2:6788591-6788610 | None:intergenic | 20.0% |
| !!! | ATGTATTGGTATTTTTTAAG+AGG | - | chr7.2:6789523-6789542 | MS.gene23012:intron | 20.0% |
| !!! | CATCACTTTATTTATCATAT+TGG | - | chr7.2:6789468-6789487 | MS.gene23012:intron | 20.0% |
| !!! | GATGAATTACTTTTTTTGAA+AGG | + | chr7.2:6789272-6789291 | None:intergenic | 20.0% |
| !!! | TTTCTTAATTAGTGCTATTA+GGG | + | chr7.2:6788676-6788695 | None:intergenic | 20.0% |
| !!! | TTTTCTTAATTAGTGCTATT+AGG | + | chr7.2:6788677-6788696 | None:intergenic | 20.0% |
| !! | TGTTTTGTATTTTCCTTCAT+AGG | - | chr7.2:6788635-6788654 | MS.gene23012:CDS | 25.0% |
| !! | TTGATTGGTTAAGCTTTAAT+GGG | + | chr7.2:6789448-6789467 | None:intergenic | 25.0% |
| !!! | TTTTATAAAGTGTCGAATAC+AGG | + | chr7.2:6789577-6789596 | None:intergenic | 25.0% |
| !!! | TTTTTAAGAGGTGTGATATT+TGG | - | chr7.2:6789535-6789554 | MS.gene23012:intron | 25.0% |
| AATAAAAACACTATGTGCTG+AGG | + | chr7.2:6789014-6789033 | None:intergenic | 30.0% | |
| AATGCTAGACCTAGTTATAA+TGG | - | chr7.2:6789872-6789891 | MS.gene23012:intron | 30.0% | |
| ACAATTTCACAAAGATGCAT+TGG | - | chr7.2:6789300-6789319 | MS.gene23012:intron | 30.0% | |
| AGAGTAATGCCATTATAACT+AGG | + | chr7.2:6789884-6789903 | None:intergenic | 30.0% | |
| CATTTATATTCCAAATAGGG+AGG | + | chr7.2:6789506-6789525 | None:intergenic | 30.0% | |
| TTCATATGCTGCAATTTCTT+TGG | - | chr7.2:6789794-6789813 | MS.gene23012:intron | 30.0% | |
| ! | ATTCTCTCTTAGGTTTTTCT+TGG | - | chr7.2:6789752-6789771 | MS.gene23012:intron | 30.0% |
| ! | GTTGATTGGTTAAGCTTTAA+TGG | + | chr7.2:6789449-6789468 | None:intergenic | 30.0% |
| ! | TATTTGGGATAAAGAGAAGA+TGG | + | chr7.2:6788878-6788897 | None:intergenic | 30.0% |
| !! | CAGTCACTTTGAAATTACTT+AGG | + | chr7.2:6789727-6789746 | None:intergenic | 30.0% |
| !! | TGTTTATGATGTGTTGCTTA+GGG | - | chr7.2:6788402-6788421 | MS.gene23012:CDS | 30.0% |
| !!! | ATAGTGTTGATGTCAGATTT+TGG | - | chr7.2:6789671-6789690 | MS.gene23012:intron | 30.0% |
| !!! | TAGTGTTGATGTCAGATTTT+GGG | - | chr7.2:6789672-6789691 | MS.gene23012:intron | 30.0% |
| AAACCAATCAAAGACAAGTG+TGG | - | chr7.2:6788330-6788349 | MS.gene23012:CDS | 35.0% | |
| AAGGTGGTAGTACAAATGAA+AGG | + | chr7.2:6788765-6788784 | None:intergenic | 35.0% | |
| AATTCAAAGCTACTGCTAAG+TGG | - | chr7.2:6788509-6788528 | MS.gene23012:CDS | 35.0% | |
| ATGTACTTAAGCTTGTGAGT+AGG | - | chr7.2:6789172-6789191 | MS.gene23012:intron | 35.0% | |
| ATTCAAAGCTACTGCTAAGT+GGG | - | chr7.2:6788510-6788529 | MS.gene23012:CDS | 35.0% | |
| TATATTCCAAATAGGGAGGA+AGG | + | chr7.2:6789502-6789521 | None:intergenic | 35.0% | |
| TGTACTTAAGCTTGTGAGTA+GGG | - | chr7.2:6789173-6789192 | MS.gene23012:intron | 35.0% | |
| ! | CTTGTTAACTTGACCTATGA+AGG | + | chr7.2:6788651-6788670 | None:intergenic | 35.0% |
| ! | GACTGACTTTATTCTCTCTT+AGG | - | chr7.2:6789742-6789761 | MS.gene23012:intron | 35.0% |
| ! | TTCTTGGTGACAAATGCTAT+AGG | - | chr7.2:6789768-6789787 | MS.gene23012:intron | 35.0% |
| !! | GTGTTTATGATGTGTTGCTT+AGG | - | chr7.2:6788401-6788420 | MS.gene23012:CDS | 35.0% |
| !!! | TAGTGCTGTTTTATTTCCAC+TGG | + | chr7.2:6789841-6789860 | None:intergenic | 35.0% |
| AACAGTCATGTGACGACAAT+AGG | + | chr7.2:6790000-6790019 | None:intergenic | 40.0% | |
| CAATCAAAGACAAGTGTGGA+TGG | - | chr7.2:6788334-6788353 | MS.gene23012:CDS | 40.0% | |
| CACAAGTAAAAGGAAGACAG+TGG | + | chr7.2:6790048-6790067 | None:intergenic | 40.0% | |
| CAGTGGAACCAATGATAGAT+AGG | + | chr7.2:6790031-6790050 | None:intergenic | 40.0% | |
| CATCCACACTTGTCTTTGAT+TGG | + | chr7.2:6788336-6788355 | None:intergenic | 40.0% | |
| CTCACTGCTACTATCATTGT+GGG | - | chr7.2:6788445-6788464 | MS.gene23012:CDS | 40.0% | |
| GCTTTGGTCCTATCTATCAT+TGG | - | chr7.2:6790020-6790039 | MS.gene23012:CDS | 40.0% | |
| TCAACAATTGCAAGAACCAG+TGG | - | chr7.2:6789822-6789841 | MS.gene23012:intron | 40.0% | |
| TCTCACTGCTACTATCATTG+TGG | - | chr7.2:6788444-6788463 | MS.gene23012:CDS | 40.0% | |
| TGTGAGTAGGGTTTAGTAGT+TGG | - | chr7.2:6789185-6789204 | MS.gene23012:intron | 40.0% | |
| ! | CACTGTCTTCCTTTTACTTG+TGG | - | chr7.2:6790046-6790065 | MS.gene23012:CDS | 40.0% |
| ! | GCTACTATCATTGTGGGTTT+TGG | - | chr7.2:6788451-6788470 | MS.gene23012:CDS | 40.0% |
| !! | TATCATTGTGGGTTTTGGCA+AGG | - | chr7.2:6788456-6788475 | MS.gene23012:CDS | 40.0% |
| CTAGTGGTAGCATAGTAGAG+AGG | + | chr7.2:6788575-6788594 | None:intergenic | 45.0% | |
| GAGAGTGAGCCACAAGTAAA+AGG | + | chr7.2:6790058-6790077 | None:intergenic | 45.0% | |
| GCATTACTCTTCTCAGCCAA+TGG | - | chr7.2:6789894-6789913 | MS.gene23012:CDS | 45.0% | |
| TCACAGCGATGTGAAGGTTA+TGG | - | chr7.2:6788360-6788379 | MS.gene23012:CDS | 45.0% | |
| ! | TCGTCACATGACTGTTGCTT+TGG | - | chr7.2:6790004-6790023 | MS.gene23012:CDS | 45.0% |
| !! | GATGTGTTGCTTAGGGTTCT+TGG | - | chr7.2:6788409-6788428 | MS.gene23012:CDS | 45.0% |
| AAGGAAACTCGCACGTGCAA+TGG | - | chr7.2:6789949-6789968 | MS.gene23012:CDS | 50.0% | |
| GTAGCTCCTTCCTCCCTATT+TGG | - | chr7.2:6789493-6789512 | MS.gene23012:intron | 50.0% | |
| TGGAGTTCACAGCGATGTGA+AGG | - | chr7.2:6788354-6788373 | MS.gene23012:CDS | 50.0% | |
| !! | GGGTTTTGGCAAGGAGACTA+AGG | - | chr7.2:6788465-6788484 | MS.gene23012:CDS | 50.0% |
| !! | GTGGGAGTGTTAGGACAGAA+AGG | - | chr7.2:6789930-6789949 | MS.gene23012:CDS | 50.0% |
| AATGGAGCTGCTGGTGCAGT+GGG | - | chr7.2:6789912-6789931 | MS.gene23012:CDS | 55.0% | |
| TTCTCAGCCAATGGAGCTGC+TGG | - | chr7.2:6789903-6789922 | MS.gene23012:CDS | 55.0% | |
| CAATGGAGCTGCTGGTGCAG+TGG | - | chr7.2:6789911-6789930 | MS.gene23012:CDS | 60.0% | |
| CACTGCACCAGCAGCTCCAT+TGG | + | chr7.2:6789913-6789932 | None:intergenic | 60.0% | |
| !! | GCTGGTGCAGTGGGAGTGTT+AGG | - | chr7.2:6789921-6789940 | MS.gene23012:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 6788325 | 6790109 | 6788325 | ID=MS.gene23012 |
| chr7.2 | mRNA | 6788325 | 6790109 | 6788325 | ID=MS.gene23012.t1;Parent=MS.gene23012 |
| chr7.2 | exon | 6789883 | 6790109 | 6789883 | ID=MS.gene23012.t1.exon1;Parent=MS.gene23012.t1 |
| chr7.2 | CDS | 6789883 | 6790109 | 6789883 | ID=cds.MS.gene23012.t1;Parent=MS.gene23012.t1 |
| chr7.2 | exon | 6788325 | 6788670 | 6788325 | ID=MS.gene23012.t1.exon2;Parent=MS.gene23012.t1 |
| chr7.2 | CDS | 6788325 | 6788670 | 6788325 | ID=cds.MS.gene23012.t1;Parent=MS.gene23012.t1 |
| Gene Sequence |
| Protein sequence |
