AlfalfaGEDB | MS.gene23147

M. sativa cultivar XinJiangDaYe / MS.gene23147

KEGG: K00036
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004345 GO:0005488 GO:0005975 GO:0005996 GO:0006006 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0036094 GO:0044238 GO:0044281 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363
PFAM: PF02781.19

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23147.t1	XP_024625229.1	99.3	145	1	0	1	145	337	481	1.20E-78	302.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23147.t1	Q93ZW0	75.9	145	35	0	1	145	481	625	7.6e-63	241.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23147.t1	A0A072U529	99.3	145	1	0	1	145	337	481	8.3e-79	302.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049427	MS.gene23147	0.805587	1.24E-49	-1.69E-46
MS.gene049661	MS.gene23147	0.80271	4.93E-49	-1.69E-46
MS.gene050076	MS.gene23147	0.851778	7.11E-61	-1.69E-46
MS.gene050301	MS.gene23147	0.845142	4.88E-59	-1.69E-46
MS.gene050397	MS.gene23147	0.831879	1.30E-55	-1.69E-46
MS.gene050404	MS.gene23147	0.810954	8.91E-51	-1.69E-46
MS.gene050406	MS.gene23147	0.826915	2.09E-54	-1.69E-46
MS.gene050432	MS.gene23147	0.816997	4.14E-52	-1.69E-46
MS.gene050464	MS.gene23147	0.845889	3.06E-59	-1.69E-46
MS.gene050529	MS.gene23147	0.838483	2.80E-57	-1.69E-46
MS.gene050781	MS.gene23147	0.858359	8.70E-63	-1.69E-46
MS.gene050783	MS.gene23147	0.90065	5.92E-78	-1.69E-46
MS.gene05101	MS.gene23147	0.873034	2.01E-67	-1.69E-46
MS.gene051171	MS.gene23147	0.800679	1.29E-48	-1.69E-46
MS.gene051242	MS.gene23147	0.805392	1.36E-49	-1.69E-46
MS.gene051582	MS.gene23147	0.839481	1.54E-57	-1.69E-46
MS.gene052078	MS.gene23147	0.82383	1.12E-53	-1.69E-46
MS.gene052310	MS.gene23147	0.814061	1.87E-51	-1.69E-46
MS.gene052326	MS.gene23147	0.826235	3.03E-54	-1.69E-46
MS.gene053836	MS.gene23147	0.809292	2.03E-50	-1.69E-46
MS.gene053907	MS.gene23147	0.820804	5.65E-53	-1.69E-46
MS.gene053971	MS.gene23147	0.847314	1.25E-59	-1.69E-46
MS.gene054376	MS.gene23147	0.823648	1.24E-53	-1.69E-46
MS.gene054802	MS.gene23147	0.822489	2.30E-53	-1.69E-46
MS.gene054803	MS.gene23147	0.819663	1.03E-52	-1.69E-46
MS.gene054804	MS.gene23147	0.82325	1.53E-53	-1.69E-46
MS.gene055116	MS.gene23147	0.818142	2.29E-52	-1.69E-46
MS.gene055277	MS.gene23147	0.85102	1.16E-60	-1.69E-46
MS.gene055390	MS.gene23147	0.807956	3.92E-50	-1.69E-46
MS.gene055422	MS.gene23147	0.814608	1.41E-51	-1.69E-46
MS.gene055428	MS.gene23147	0.841098	5.84E-58	-1.69E-46
MS.gene055499	MS.gene23147	0.805404	1.36E-49	-1.69E-46
MS.gene055564	MS.gene23147	0.811275	7.59E-51	-1.69E-46
MS.gene056191	MS.gene23147	0.803574	3.27E-49	-1.69E-46
MS.gene056407	MS.gene23147	0.813814	2.12E-51	-1.69E-46
MS.gene056451	MS.gene23147	0.82424	8.98E-54	-1.69E-46
MS.gene056452	MS.gene23147	0.800184	1.62E-48	-1.69E-46
MS.gene056612	MS.gene23147	0.862632	4.42E-64	-1.69E-46
MS.gene056796	MS.gene23147	0.818151	2.28E-52	-1.69E-46
MS.gene057011	MS.gene23147	0.804262	2.35E-49	-1.69E-46
MS.gene05702	MS.gene23147	0.840737	7.26E-58	-1.69E-46
MS.gene057121	MS.gene23147	0.803085	4.12E-49	-1.69E-46
MS.gene057196	MS.gene23147	0.807595	4.68E-50	-1.69E-46
MS.gene057245	MS.gene23147	0.809353	1.97E-50	-1.69E-46
MS.gene057439	MS.gene23147	0.802911	4.48E-49	-1.69E-46
MS.gene058002	MS.gene23147	0.823049	1.71E-53	-1.69E-46
MS.gene058142	MS.gene23147	0.801999	6.91E-49	-1.69E-46
MS.gene058233	MS.gene23147	0.875745	2.42E-68	-1.69E-46
MS.gene058276	MS.gene23147	0.814829	1.26E-51	-1.69E-46
MS.gene058293	MS.gene23147	0.812843	3.46E-51	-1.69E-46
MS.gene058660	MS.gene23147	0.838483	2.80E-57	-1.69E-46
MS.gene058746	MS.gene23147	0.819726	9.98E-53	-1.69E-46
MS.gene05907	MS.gene23147	0.820943	5.25E-53	-1.69E-46
MS.gene059536	MS.gene23147	0.805042	1.62E-49	-1.69E-46
MS.gene059597	MS.gene23147	0.801642	8.18E-49	-1.69E-46
MS.gene059692	MS.gene23147	0.804412	2.19E-49	-1.69E-46
MS.gene059695	MS.gene23147	0.806639	7.46E-50	-1.69E-46
MS.gene059894	MS.gene23147	0.818994	1.47E-52	-1.69E-46
MS.gene059960	MS.gene23147	0.804313	2.29E-49	-1.69E-46
MS.gene06037	MS.gene23147	0.806361	8.54E-50	-1.69E-46
MS.gene060407	MS.gene23147	0.80767	4.51E-50	-1.69E-46
MS.gene061049	MS.gene23147	0.832611	8.56E-56	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23147.t1	MTR_7g111760	99.310	145	1	0	1	145	337	481	4.45e-100	295
MS.gene23147.t1	MTR_7g111760	99.310	145	1	0	1	145	457	601	9.21e-100	298
MS.gene23147.t1	MTR_0590s0010	56.338	142	62	0	1	142	211	352	1.42e-54	175
MS.gene23147.t1	MTR_7g022440	56.738	141	61	0	2	142	448	588	1.88e-53	177
MS.gene23147.t1	MTR_4g085930	45.390	141	60	2	2	142	15	138	7.21e-40	131
MS.gene23147.t1	MTR_7g037440	42.336	137	73	3	2	137	368	499	4.19e-28	108
MS.gene23147.t1	MTR_6g022860	39.597	149	78	5	2	143	371	514	7.68e-27	104

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23147.t1	AT1G09420	75.862	145	35	0	1	145	481	625	1.13e-74	234
MS.gene23147.t1	AT1G09420	75.862	145	35	0	1	145	491	635	1.51e-74	234
MS.gene23147.t1	AT5G35790	57.447	141	60	0	2	142	430	570	1.31e-56	186
MS.gene23147.t1	AT5G13110	58.156	141	59	0	2	142	449	589	4.86e-56	184
MS.gene23147.t1	AT1G24280	57.447	141	60	0	2	142	452	592	4.71e-55	182
MS.gene23147.t1	AT3G27300	42.282	149	74	5	2	143	369	512	5.40e-30	113
MS.gene23147.t1	AT3G27300	42.282	149	74	5	2	143	369	512	5.40e-30	113
MS.gene23147.t1	AT3G27300	42.282	149	74	5	2	143	369	512	5.40e-30	113
MS.gene23147.t1	AT3G27300	42.282	149	74	5	2	143	440	583	6.09e-30	113
MS.gene23147.t1	AT3G27300	42.282	149	74	5	2	143	423	566	8.21e-30	113
MS.gene23147.t1	AT5G40760	41.611	149	75	5	2	143	368	511	1.31e-27	106
MS.gene23147.t1	AT5G40760	41.611	149	75	5	2	143	368	511	1.31e-27	106

Find 0 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAACATTAATGAATAAAATT+AGG	-	51783:1737-1756	None:intergenic	10.0%
!!!	TTATTCATTAATGTTTTTTA+AGG	+	51783:1741-1760	MS.gene23147:intron	10.0%
!!	ATAAATACTATAGTCAAACA+CGG	-	51783:1653-1672	None:intergenic	20.0%
!!!	TTTTTTAAGGTACAACATTG+AGG	+	51783:1754-1773	MS.gene23147:intron	25.0%
	AGAATTGAATCTGCTTTACA+AGG	+	51783:1613-1632	MS.gene23147:CDS	30.0%
	ATGATATTTAATCAAGCACG+CGG	-	51783:1707-1726	None:intergenic	30.0%
	ATGTTCCAGGAAATGTTTAC+CGG	+	51783:1465-1484	MS.gene23147:CDS	35.0%
	ATTCAATTTCGACATGTTCC+AGG	+	51783:1452-1471	MS.gene23147:CDS	35.0%
	GATTCTGAATGAGATAGACA+AGG	+	51783:1880-1899	MS.gene23147:CDS	35.0%
	TGATATTTAATCAAGCACGC+GGG	-	51783:1706-1725	None:intergenic	35.0%
	TTCTGCTTGATGTCATTGAT+GGG	+	51783:1798-1817	MS.gene23147:CDS	35.0%
!	ATCAGTGGAGCTTTATGAAT+TGG	+	51783:1910-1929	MS.gene23147:CDS	35.0%
!	TCAGTGGAGCTTTATGAATT+GGG	+	51783:1911-1930	MS.gene23147:CDS	35.0%
	AACAACAAGGTTCCAGGATT+AGG	+	51783:1572-1591	MS.gene23147:CDS	40.0%
	AATGTTTACCGGGAATGCAT+TGG	+	51783:1476-1495	MS.gene23147:CDS	40.0%
	ACGAAGAATGAGCTCATTTG+TGG	-	51783:1519-1538	None:intergenic	40.0%
	AGAAGATGCTCGTATGAATC+CGG	-	51783:1782-1801	None:intergenic	40.0%
	AGACAAGGACAATGTATCAG+TGG	+	51783:1895-1914	MS.gene23147:CDS	40.0%
	AGAGTTAACAACAAGGTTCC+AGG	+	51783:1566-1585	MS.gene23147:CDS	40.0%
	AGCATTTGGTCAAGGTATGA+TGG	-	51783:1678-1697	None:intergenic	40.0%
	ATGTTTACCGGGAATGCATT+GGG	+	51783:1477-1496	MS.gene23147:CDS	40.0%
	CTTCTGCTTGATGTCATTGA+TGG	+	51783:1797-1816	MS.gene23147:CDS	40.0%
	GAATGCATTGGGCACAATAT+TGG	+	51783:1488-1507	MS.gene23147:CDS	40.0%
	GTTGTTAACTCTCACCAGAA+TGG	-	51783:1558-1577	None:intergenic	40.0%
	TCCAGGATTAGGCTTAAAAC+TGG	+	51783:1583-1602	MS.gene23147:CDS	40.0%
	TCTGCTTGATGTCATTGATG+GGG	+	51783:1799-1818	MS.gene23147:CDS	40.0%
	TCTGGTGAGAGTTAACAACA+AGG	+	51783:1559-1578	MS.gene23147:CDS	40.0%
	TGTTCCAGGAAATGTTTACC+GGG	+	51783:1466-1485	MS.gene23147:CDS	40.0%
!	AGTGGAGCTTTATGAATTGG+GGG	+	51783:1913-1932	MS.gene23147:CDS	40.0%
!	CAGTGGAGCTTTATGAATTG+GGG	+	51783:1912-1931	MS.gene23147:CDS	40.0%
!!!	TCCAGTTTTAAGCCTAATCC+TGG	-	51783:1587-1606	None:intergenic	40.0%
	AAGGTACAACATTGAGGTGC+CGG	+	51783:1760-1779	MS.gene23147:intron	45.0%
	CATTCCCGGTAAACATTTCC+TGG	-	51783:1473-1492	None:intergenic	45.0%
	GAATGAGCTCATTTGTGGCA+CGG	-	51783:1514-1533	None:intergenic	45.0%
	GTTTATGAGAAGCGATGAGC+TGG	+	51783:1832-1851	MS.gene23147:CDS	45.0%
	TATTGTGCCCAATGCATTCC+CGG	-	51783:1487-1506	None:intergenic	45.0%
	TGATCCTGATGAAGCCATTC+TGG	+	51783:1541-1560	MS.gene23147:CDS	45.0%
!	GTGGAGCTTTATGAATTGGG+GGG	+	51783:1914-1933	MS.gene23147:CDS	45.0%
!!	GGGTTAGAAGCATTTGGTCA+AGG	-	51783:1686-1705	None:intergenic	45.0%
	CAGAGGTAGTATGCTCCAAC+CGG	-	51783:1947-1966	None:intergenic	50.0%
	CTCACCAGAATGGCTTCATC+AGG	-	51783:1548-1567	None:intergenic	50.0%
	CTTTATGAATTGGGGGGTCG+CGG	+	51783:1920-1939	MS.gene23147:CDS	50.0%
	GGTTGGAGCATACTACCTCT+GGG	+	51783:1946-1965	MS.gene23147:CDS	50.0%
	CGGTTGGAGCATACTACCTC+TGG	+	51783:1945-1964	MS.gene23147:CDS	55.0%
	GGCAAAACACGCTGTCCGTT+GGG	+	51783:1967-1986	MS.gene23147:CDS	55.0%
!!	GCACGCGGGTTAGAAGCATT+TGG	-	51783:1692-1711	None:intergenic	55.0%
	ACACGCTGTCCGTTGGGTAG+AGG	+	51783:1973-1992	MS.gene23147:CDS	60.0%
	GGGCAAAACACGCTGTCCGT+TGG	+	51783:1966-1985	MS.gene23147:CDS	60.0%
!	GGACAGCGTGTTTTGCCCAG+AGG	-	51783:1964-1983	None:intergenic	60.0%
	GCGATGAGCTGGCAGCTGCA+TGG	+	51783:1843-1862	MS.gene23147:CDS	65.0%
	TGAATTGGGGGGTCGCGGTC+CGG	+	51783:1925-1944	MS.gene23147:CDS	65.0%
	TTGGGGGGTCGCGGTCCGGT+TGG	+	51783:1929-1948	MS.gene23147:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
51783	gene	1440	2000	1440	ID=MS.gene23147
51783	mRNA	1440	2000	1440	ID=MS.gene23147.t1;Parent=MS.gene23147
51783	exon	1440	1639	1440	ID=MS.gene23147.t1.exon1;Parent=MS.gene23147.t1
51783	CDS	1440	1639	1440	ID=cds.MS.gene23147.t1;Parent=MS.gene23147.t1
51783	exon	1763	2000	1763	ID=MS.gene23147.t1.exon2;Parent=MS.gene23147.t1
51783	CDS	1763	2000	1763	ID=cds.MS.gene23147.t1;Parent=MS.gene23147.t1

Gene Sequence

>MS.gene23147

ATGGAGATACGAATTCAATTTCGACATGTTCCAGGAAATGTTTACCGGGAATGCATTGGGCACAATATTGGCCGTGCCACAAATGAGCTCATTCTTCGTGATGATCCTGATGAAGCCATTCTGGTGAGAGTTAACAACAAGGTTCCAGGATTAGGCTTAAAACTGGACTCTTCAGAATTGAATCTGCTTTACAAGGACAAGTAAGCACTACCGTGTTTGACTATAGTATTTATTTCCATCATACCTTGACCAAATGCTTCTAACCCGCGTGCTTGATTAAATATCATTTATCTGCCTAATTTTATTCATTAATGTTTTTTAAGGTACAACATTGAGGTGCCGGATTCATACGAGCATCTTCTGCTTGATGTCATTGATGGGGATAATCATCTGTTTATGAGAAGCGATGAGCTGGCAGCTGCATGGAACATTCTAACTCTGATTCTGAATGAGATAGACAAGGACAATGTATCAGTGGAGCTTTATGAATTGGGGGGTCGCGGTCCGGTTGGAGCATACTACCTCTGGGCAAAACACGCTGTCCGTTGGGTAGAGGACTAG

Protein sequence

>MS.gene23147.t1

MEIRIQFRHVPGNVYRECIGHNIGRATNELILRDDPDEAILVRVNNKVPGLGLKLDSSELNLLYKDKYNIEVPDSYEHLLLDVIDGDNHLFMRSDELAAAWNILTLILNEIDKDNVSVELYELGGRGPVGAYYLWAKHAVRWVED