Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23695.t1 | KEH22626.1 | 99.2 | 245 | 2 | 0 | 11 | 255 | 5 | 249 | 1.10E-137 | 499.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23695.t1 | Q8GYN5 | 41.7 | 247 | 103 | 10 | 12 | 255 | 3 | 211 | 4.3e-37 | 156.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23695.t1 | A0A072TZJ4 | 99.2 | 245 | 2 | 0 | 11 | 255 | 5 | 249 | 8.2e-138 | 499.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene23695 | 0.802136 | 6.47E-49 | -1.69E-46 |
| MS.gene04920 | MS.gene23695 | 0.808818 | 2.57E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene23695 | 0.843457 | 1.38E-58 | -1.69E-46 |
| MS.gene049499 | MS.gene23695 | 0.830412 | 2.98E-55 | -1.69E-46 |
| MS.gene049680 | MS.gene23695 | 0.828161 | 1.05E-54 | -1.69E-46 |
| MS.gene050945 | MS.gene23695 | 0.868388 | 6.78E-66 | -1.69E-46 |
| MS.gene051019 | MS.gene23695 | 0.802974 | 4.35E-49 | -1.69E-46 |
| MS.gene051154 | MS.gene23695 | 0.83571 | 1.43E-56 | -1.69E-46 |
| MS.gene051699 | MS.gene23695 | 0.991636 | 1.03E-188 | -1.69E-46 |
| MS.gene052533 | MS.gene23695 | 0.825429 | 4.71E-54 | -1.69E-46 |
| MS.gene052559 | MS.gene23695 | 0.80862 | 2.83E-50 | -1.69E-46 |
| MS.gene052793 | MS.gene23695 | 0.848301 | 6.69E-60 | -1.69E-46 |
| MS.gene053045 | MS.gene23695 | 0.80567 | 1.19E-49 | -1.69E-46 |
| MS.gene053272 | MS.gene23695 | -0.800066 | 1.72E-48 | -1.69E-46 |
| MS.gene053879 | MS.gene23695 | 0.826098 | 3.27E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene23695 | 0.839886 | 1.21E-57 | -1.69E-46 |
| MS.gene054222 | MS.gene23695 | 0.857145 | 1.99E-62 | -1.69E-46 |
| MS.gene054413 | MS.gene23695 | 0.818254 | 2.16E-52 | -1.69E-46 |
| MS.gene054490 | MS.gene23695 | 0.819727 | 9.98E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene23695 | 0.804296 | 2.31E-49 | -1.69E-46 |
| MS.gene054957 | MS.gene23695 | 0.843317 | 1.51E-58 | -1.69E-46 |
| MS.gene055150 | MS.gene23695 | 0.805168 | 1.52E-49 | -1.69E-46 |
| MS.gene055229 | MS.gene23695 | 0.824587 | 7.44E-54 | -1.69E-46 |
| MS.gene05624 | MS.gene23695 | 0.812991 | 3.21E-51 | -1.69E-46 |
| MS.gene056677 | MS.gene23695 | 0.839813 | 1.27E-57 | -1.69E-46 |
| MS.gene057102 | MS.gene23695 | 0.856683 | 2.73E-62 | -1.69E-46 |
| MS.gene057893 | MS.gene23695 | -0.80529 | 1.43E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene23695 | 0.803808 | 2.92E-49 | -1.69E-46 |
| MS.gene058159 | MS.gene23695 | 0.881358 | 2.57E-70 | -1.69E-46 |
| MS.gene058279 | MS.gene23695 | 0.818965 | 1.49E-52 | -1.69E-46 |
| MS.gene058592 | MS.gene23695 | 0.824172 | 9.32E-54 | -1.69E-46 |
| MS.gene05878 | MS.gene23695 | 0.807116 | 5.91E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene23695 | 0.870207 | 1.74E-66 | -1.69E-46 |
| MS.gene05956 | MS.gene23695 | 0.801704 | 7.94E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene23695 | -0.878273 | 3.21E-69 | -1.69E-46 |
| MS.gene059901 | MS.gene23695 | -0.821245 | 4.47E-53 | -1.69E-46 |
| MS.gene060012 | MS.gene23695 | 0.80584 | 1.10E-49 | -1.69E-46 |
| MS.gene06018 | MS.gene23695 | 0.812775 | 3.58E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene23695 | 0.806979 | 6.32E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene23695 | 0.812798 | 3.54E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene23695 | 0.834359 | 3.14E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene23695 | 0.837313 | 5.59E-57 | -1.69E-46 |
| MS.gene061160 | MS.gene23695 | 0.821081 | 4.88E-53 | -1.69E-46 |
| MS.gene061243 | MS.gene23695 | 0.825275 | 5.12E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23695.t1 | MTR_7g056147 | 97.984 | 248 | 5 | 0 | 8 | 255 | 1 | 248 | 0.0 | 499 |
| MS.gene23695.t1 | MTR_7g056147 | 99.184 | 245 | 2 | 0 | 11 | 255 | 5 | 249 | 0.0 | 498 |
| MS.gene23695.t1 | MTR_7g056147 | 99.052 | 211 | 2 | 0 | 45 | 255 | 1 | 211 | 2.11e-154 | 428 |
| MS.gene23695.t1 | MTR_8g012960 | 68.321 | 262 | 62 | 7 | 11 | 255 | 3 | 260 | 1.45e-112 | 324 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23695.t1 | AT3G25070 | 42.353 | 255 | 106 | 11 | 4 | 255 | 8 | 224 | 2.27e-47 | 157 |
| MS.gene23695.t1 | AT3G25070 | 42.510 | 247 | 101 | 11 | 12 | 255 | 3 | 211 | 1.61e-45 | 152 |
Find 61 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTCTCATGTTCCAAAGTT+TGG | 0.243771 | 7.1:-45858904 | MS.gene23695:CDS |
| ATCGTTTGGGTTGATCATTT+TGG | 0.317091 | 7.1:+45858810 | None:intergenic |
| TGTCATTCGCAGGTTGGTTT+CGG | 0.334584 | 7.1:+45857804 | None:intergenic |
| TCGGAGAATCAATCAGAAAA+AGG | 0.335779 | 7.1:-45858712 | MS.gene23695:CDS |
| TCCGAACTAACTCTTGGTTT+TGG | 0.336462 | 7.1:+45858730 | None:intergenic |
| TTGTCGAAATAAACTGTATA+AGG | 0.343438 | 7.1:+45858856 | None:intergenic |
| CTGGTAGAGATAGTCCTTCT+TGG | 0.350219 | 7.1:-45858492 | MS.gene23695:CDS |
| CCTTCCCAATTGCCAAACTT+TGG | 0.350561 | 7.1:+45858892 | None:intergenic |
| CTCGATTAACCGGTCTCAAT+CGG | 0.362293 | 7.1:+45858422 | None:intergenic |
| GTTAACTCGCCGGCTCGTCC+TGG | 0.387058 | 7.1:-45858625 | MS.gene23695:CDS |
| GGTCTCAATCGGGATCTTCC+AGG | 0.388968 | 7.1:+45858433 | None:intergenic |
| CTAGCAGTACTTTGTCTTGA+AGG | 0.389113 | 7.1:+45858565 | None:intergenic |
| ATGTTCCAAAGTTTGGCAAT+TGG | 0.415742 | 7.1:-45858897 | MS.gene23695:CDS |
| TGTTCCAAAGTTTGGCAATT+GGG | 0.422530 | 7.1:-45858896 | MS.gene23695:CDS |
| AGTGCTGCTGTTCCAAAGTT+TGG | 0.426330 | 7.1:-45857953 | MS.gene23695:CDS |
| GAGGAGAAGCACGTTGCGGC+TGG | 0.428563 | 7.1:-45857866 | MS.gene23695:CDS |
| ATTTCATCATCTCGATTAAC+CGG | 0.431529 | 7.1:+45858412 | None:intergenic |
| CCGGCTCGTCCTGGAGGTCA+TGG | 0.432822 | 7.1:-45858616 | MS.gene23695:CDS |
| TCCAAAACCAAGAGTTAGTT+CGG | 0.438652 | 7.1:-45858731 | MS.gene23695:CDS |
| TCATCCCACTCACCAAACTT+TGG | 0.439708 | 7.1:+45857941 | None:intergenic |
| ATGCACCAGGCACACCCAAC+GGG | 0.439756 | 7.1:-45857841 | MS.gene23695:CDS |
| GATCTCCCGTTGGGTGTGCC+TGG | 0.452434 | 7.1:+45857836 | None:intergenic |
| TCGATTAACCGGTCTCAATC+GGG | 0.454767 | 7.1:+45858423 | None:intergenic |
| TGGTAGAGATAGTCCTTCTT+GGG | 0.468532 | 7.1:-45858491 | MS.gene23695:CDS |
| TGATTCTCCGAACTAACTCT+TGG | 0.475335 | 7.1:+45858724 | None:intergenic |
| CAGTTTATTTCGACAAAGCT+CGG | 0.484974 | 7.1:-45858849 | MS.gene23695:CDS |
| ACCTGAGCTTTGTCATTCGC+AGG | 0.492598 | 7.1:+45857794 | None:intergenic |
| CCAAAGTTTGGCAATTGGGA+AGG | 0.497311 | 7.1:-45858892 | MS.gene23695:CDS |
| ACGTTCACCTCTTCATCGCC+AGG | 0.506105 | 7.1:-45858524 | MS.gene23695:CDS |
| GTATAGCCATCAGCAGATGC+AGG | 0.507216 | 7.1:+45857911 | None:intergenic |
| CATCGCCAGGCTAAAACTCC+TGG | 0.514302 | 7.1:-45858511 | MS.gene23695:CDS |
| GTACTCTTTCCTTCCCAAGA+AGG | 0.526369 | 7.1:+45858478 | None:intergenic |
| GAGCTTTGTCATTCGCAGGT+TGG | 0.539046 | 7.1:+45857798 | None:intergenic |
| ATAACATATGATCTCCCGTT+GGG | 0.539515 | 7.1:+45857827 | None:intergenic |
| CAAGAAGGACTATCTCTACC+AGG | 0.547661 | 7.1:+45858493 | None:intergenic |
| CGTCCTGGAGGTCATGGAGT+AGG | 0.551535 | 7.1:-45858610 | MS.gene23695:CDS |
| GACAGCAGTCATGGTACACC+TGG | 0.555414 | 7.1:-45858451 | MS.gene23695:CDS |
| TGTTCCAAAGTTTGGTGAGT+GGG | 0.555787 | 7.1:-45857945 | MS.gene23695:CDS |
| TGGAAGATCCCGATTGAGAC+CGG | 0.561277 | 7.1:-45858431 | MS.gene23695:CDS |
| TAAGCATTCTGTTAACTCGC+CGG | 0.562363 | 7.1:-45858635 | MS.gene23695:CDS |
| CCATGACCTCCAGGACGAGC+CGG | 0.565142 | 7.1:+45858616 | None:intergenic |
| AATGCACCAGGCACACCCAA+CGG | 0.568490 | 7.1:-45857842 | MS.gene23695:CDS |
| AGTGACCCTGCATCTGCTGA+TGG | 0.581402 | 7.1:-45857917 | MS.gene23695:CDS |
| GAACCTACTCCATGACCTCC+AGG | 0.583850 | 7.1:+45858607 | None:intergenic |
| CTGTTCCAAAGTTTGGTGAG+TGG | 0.599037 | 7.1:-45857946 | MS.gene23695:CDS |
| TCTACAAAAGAACAAGGAGG+AGG | 0.599395 | 7.1:-45858665 | MS.gene23695:CDS |
| GTTGCGGCTGGAAATGCACC+AGG | 0.599588 | 7.1:-45857854 | MS.gene23695:CDS |
| AACTCGCCGGCTCGTCCTGG+AGG | 0.599986 | 7.1:-45858622 | MS.gene23695:CDS |
| AGAGATAGTCCTTCTTGGGA+AGG | 0.600332 | 7.1:-45858487 | MS.gene23695:CDS |
| AGTACATATGACAGCAGTCA+TGG | 0.601803 | 7.1:-45858460 | MS.gene23695:CDS |
| TTTGTCTTGAAGGTCTTCTG+CGG | 0.623940 | 7.1:+45858575 | None:intergenic |
| ACCTGCGAATGACAAAGCTC+AGG | 0.626820 | 7.1:-45857795 | MS.gene23695:intron |
| AAAGCTCGGAAAAGTCGACC+TGG | 0.630252 | 7.1:-45858835 | MS.gene23695:CDS |
| TATAGCCATCAGCAGATGCA+GGG | 0.631221 | 7.1:+45857912 | None:intergenic |
| GAATTCTAGAGGGAAATGGA+TGG | 0.644336 | 7.1:-45859202 | None:intergenic |
| CTACAAAAGAACAAGGAGGA+GGG | 0.656438 | 7.1:-45858664 | MS.gene23695:CDS |
| GATAACATATGATCTCCCGT+TGG | 0.663475 | 7.1:+45857826 | None:intergenic |
| GATCAACCCAAACGATCCTG+AGG | 0.674934 | 7.1:-45858803 | MS.gene23695:CDS |
| TAACGATCTACAAAAGAACA+AGG | 0.681801 | 7.1:-45858671 | MS.gene23695:CDS |
| GCGTGAGGAGAAGCACGTTG+CGG | 0.685597 | 7.1:-45857870 | MS.gene23695:CDS |
| CGATCTACAAAAGAACAAGG+AGG | 0.753407 | 7.1:-45858668 | MS.gene23695:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATCAGTTGTAA+AGG | + | chr7.1:45858533-45858552 | None:intergenic | 15.0% |
| !! | AATGGATATAAATGAGTAAA+TGG | - | chr7.1:45857779-45857798 | MS.gene23695:intron | 20.0% |
| !! | TCTTTACAATAAATAGACAA+GGG | + | chr7.1:45858624-45858643 | None:intergenic | 20.0% |
| ! | AAAAATCAGTTGTAAAGGAA+CGG | + | chr7.1:45858528-45858547 | None:intergenic | 25.0% |
| ! | AAAACTCAAATCATTTGTGA+AGG | + | chr7.1:45858858-45858877 | None:intergenic | 25.0% |
| ! | AAACTCAAATCATTTGTGAA+GGG | + | chr7.1:45858857-45858876 | None:intergenic | 25.0% |
| ! | AATAAGATAATAAACAGCCA+AGG | - | chr7.1:45858657-45858676 | MS.gene23695:CDS | 25.0% |
| ! | AATAGGTAAATAATAGAGCA+AGG | + | chr7.1:45857827-45857846 | None:intergenic | 25.0% |
| ! | CAACAAAAATACTGTAATAC+AGG | + | chr7.1:45857897-45857916 | None:intergenic | 25.0% |
| ! | CCAAAATCAGAGTTAATAAT+AGG | + | chr7.1:45857844-45857863 | None:intergenic | 25.0% |
| ! | CTCTTCAATTTGTGTTAATT+TGG | - | chr7.1:45857936-45857955 | MS.gene23695:CDS | 25.0% |
| ! | CTCTTTACAATAAATAGACA+AGG | + | chr7.1:45858625-45858644 | None:intergenic | 25.0% |
| ! | TTGTCGAAATAAACTGTATA+AGG | + | chr7.1:45858016-45858035 | None:intergenic | 25.0% |
| ! | TTTCTAGATCAATCTTAGAA+TGG | - | chr7.1:45857761-45857780 | MS.gene23695:intron | 25.0% |
| !! | CCTATTATTAACTCTGATTT+TGG | - | chr7.1:45857841-45857860 | MS.gene23695:CDS | 25.0% |
| !!! | GAATTTTGAAGAACTAAATC+TGG | + | chr7.1:45858097-45858116 | None:intergenic | 25.0% |
| !!! | GTTTTTTTCAATTATAGCCT+TGG | + | chr7.1:45858677-45858696 | None:intergenic | 25.0% |
| AACCTTAAACGCTCTTAAAA+AGG | - | chr7.1:45858752-45858771 | MS.gene23695:CDS | 30.0% | |
| ATTTCATCATCTCGATTAAC+CGG | + | chr7.1:45858460-45858479 | None:intergenic | 30.0% | |
| TAACGATCTACAAAAGAACA+AGG | - | chr7.1:45858198-45858217 | MS.gene23695:intron | 30.0% | |
| TTTATCACGTCTTAATAAGC+AGG | + | chr7.1:45859113-45859132 | None:intergenic | 30.0% | |
| ! | TTGTTGAAACTTGACTTGAT+AGG | - | chr7.1:45857911-45857930 | MS.gene23695:CDS | 30.0% |
| !! | GTGTTTTTATGACTCTGATT+TGG | - | chr7.1:45858881-45858900 | MS.gene23695:CDS | 30.0% |
| !!! | TTCCTTTTTAAGAGCGTTTA+AGG | + | chr7.1:45858757-45858776 | None:intergenic | 30.0% |
| ATAACATATGATCTCCCGTT+GGG | + | chr7.1:45859045-45859064 | None:intergenic | 35.0% | |
| ATGTTCCAAAGTTTGGCAAT+TGG | - | chr7.1:45857972-45857991 | MS.gene23695:intron | 35.0% | |
| CAGTTTATTTCGACAAAGCT+CGG | - | chr7.1:45858020-45858039 | MS.gene23695:intron | 35.0% | |
| TCCAAAACCAAGAGTTAGTT+CGG | - | chr7.1:45858138-45858157 | MS.gene23695:intron | 35.0% | |
| TCGGAGAATCAATCAGAAAA+AGG | - | chr7.1:45858157-45858176 | MS.gene23695:intron | 35.0% | |
| TGTTCCAAAGTTTGGCAATT+GGG | - | chr7.1:45857973-45857992 | MS.gene23695:intron | 35.0% | |
| ! | ACTAAATCTGGATTTTCCTC+AGG | + | chr7.1:45858085-45858104 | None:intergenic | 35.0% |
| ! | AGTGTTAAATTTTGCGTTGG+TGG | - | chr7.1:45857725-45857744 | MS.gene23695:intron | 35.0% |
| ! | TGCAGTGTTAAATTTTGCGT+TGG | - | chr7.1:45857722-45857741 | MS.gene23695:intron | 35.0% |
| !! | ACTCTGATTTTGGTACAAGA+AGG | - | chr7.1:45857851-45857870 | MS.gene23695:CDS | 35.0% |
| !! | TTCTCATTCTTGGTTTTCCA+GGG | - | chr7.1:45859159-45859178 | MS.gene23695:intron | 35.0% |
| !!! | ATCGTTTGGGTTGATCATTT+TGG | + | chr7.1:45858062-45858081 | None:intergenic | 35.0% |
| !!! | ATTTTGCGTTGGTGGTAAAT+TGG | - | chr7.1:45857733-45857752 | MS.gene23695:intron | 35.0% |
| AATCAGTTGTAAAGGAACGG+AGG | + | chr7.1:45858525-45858544 | None:intergenic | 40.0% | |
| AGTACATATGACAGCAGTCA+TGG | - | chr7.1:45858409-45858428 | MS.gene23695:intron | 40.0% | |
| ATCAGTTGTAAAGGAACGGA+GGG | + | chr7.1:45858524-45858543 | None:intergenic | 40.0% | |
| CGATCTACAAAAGAACAAGG+AGG | - | chr7.1:45858201-45858220 | MS.gene23695:intron | 40.0% | |
| CGTTCTCATGTTCCAAAGTT+TGG | - | chr7.1:45857965-45857984 | MS.gene23695:CDS | 40.0% | |
| CTACAAAAGAACAAGGAGGA+GGG | - | chr7.1:45858205-45858224 | MS.gene23695:intron | 40.0% | |
| CTAGCAGTACTTTGTCTTGA+AGG | + | chr7.1:45858307-45858326 | None:intergenic | 40.0% | |
| GATAACATATGATCTCCCGT+TGG | + | chr7.1:45859046-45859065 | None:intergenic | 40.0% | |
| GCTTCATCACTTCTCATTCT+TGG | - | chr7.1:45859149-45859168 | MS.gene23695:intron | 40.0% | |
| TAAGCATTCTGTTAACTCGC+CGG | - | chr7.1:45858234-45858253 | MS.gene23695:intron | 40.0% | |
| TCTACAAAAGAACAAGGAGG+AGG | - | chr7.1:45858204-45858223 | MS.gene23695:intron | 40.0% | |
| TGATTCTCCGAACTAACTCT+TGG | + | chr7.1:45858148-45858167 | None:intergenic | 40.0% | |
| TGGTAGAGATAGTCCTTCTT+GGG | - | chr7.1:45858378-45858397 | MS.gene23695:intron | 40.0% | |
| TTTGTCTTGAAGGTCTTCTG+CGG | + | chr7.1:45858297-45858316 | None:intergenic | 40.0% | |
| ! | CATTTTCAACAAAGTGCGTG+AGG | - | chr7.1:45858984-45859003 | MS.gene23695:intron | 40.0% |
| ! | GATTTTCCTCAGGATCGTTT+GGG | + | chr7.1:45858075-45858094 | None:intergenic | 40.0% |
| ! | TCCGAACTAACTCTTGGTTT+TGG | + | chr7.1:45858142-45858161 | None:intergenic | 40.0% |
| ! | TGTTCCAAAGTTTGGTGAGT+GGG | - | chr7.1:45858924-45858943 | MS.gene23695:intron | 40.0% |
| !! | CTTCTCATTCTTGGTTTTCC+AGG | - | chr7.1:45859158-45859177 | MS.gene23695:intron | 40.0% |
| !! | GAAGTGATGAAGCATCGATA+TGG | + | chr7.1:45859142-45859161 | None:intergenic | 40.0% |
| !!! | GAACTAACTCTTGGTTTTGG+AGG | + | chr7.1:45858139-45858158 | None:intergenic | 40.0% |
| AGAGATAGTCCTTCTTGGGA+AGG | - | chr7.1:45858382-45858401 | MS.gene23695:intron | 45.0% | |
| CAAGAAGGACTATCTCTACC+AGG | + | chr7.1:45858379-45858398 | None:intergenic | 45.0% | |
| CCAAAGTTTGGCAATTGGGA+AGG | - | chr7.1:45857977-45857996 | MS.gene23695:intron | 45.0% | |
| CCTTCCCAATTGCCAAACTT+TGG | + | chr7.1:45857980-45857999 | None:intergenic | 45.0% | |
| CTCGATTAACCGGTCTCAAT+CGG | + | chr7.1:45858450-45858469 | None:intergenic | 45.0% | |
| CTGGTAGAGATAGTCCTTCT+TGG | - | chr7.1:45858377-45858396 | MS.gene23695:intron | 45.0% | |
| GTACTCTTTCCTTCCCAAGA+AGG | + | chr7.1:45858394-45858413 | None:intergenic | 45.0% | |
| TATAGCCATCAGCAGATGCA+GGG | + | chr7.1:45858960-45858979 | None:intergenic | 45.0% | |
| TCATCCCACTCACCAAACTT+TGG | + | chr7.1:45858931-45858950 | None:intergenic | 45.0% | |
| TCGATTAACCGGTCTCAATC+GGG | + | chr7.1:45858449-45858468 | None:intergenic | 45.0% | |
| ! | AGTGCTGCTGTTCCAAAGTT+TGG | - | chr7.1:45858916-45858935 | MS.gene23695:intron | 45.0% |
| ! | CTGTTCCAAAGTTTGGTGAG+TGG | - | chr7.1:45858923-45858942 | MS.gene23695:intron | 45.0% |
| ! | GGAACAGCAGCACTTTTATC+AGG | + | chr7.1:45858910-45858929 | None:intergenic | 45.0% |
| ! | GGATTTTCCTCAGGATCGTT+TGG | + | chr7.1:45858076-45858095 | None:intergenic | 45.0% |
| !! | TGTCATTCGCAGGTTGGTTT+CGG | + | chr7.1:45859068-45859087 | None:intergenic | 45.0% |
| AAAGCTCGGAAAAGTCGACC+TGG | - | chr7.1:45858034-45858053 | MS.gene23695:intron | 50.0% | |
| ACCTGCGAATGACAAAGCTC+AGG | - | chr7.1:45859074-45859093 | MS.gene23695:intron | 50.0% | |
| GATCAACCCAAACGATCCTG+AGG | - | chr7.1:45858066-45858085 | MS.gene23695:intron | 50.0% | |
| GTATAGCCATCAGCAGATGC+AGG | + | chr7.1:45858961-45858980 | None:intergenic | 50.0% | |
| TGGAAGATCCCGATTGAGAC+CGG | - | chr7.1:45858438-45858457 | MS.gene23695:CDS | 50.0% | |
| ! | ACCTGAGCTTTGTCATTCGC+AGG | + | chr7.1:45859078-45859097 | None:intergenic | 50.0% |
| ! | GAGCTTTGTCATTCGCAGGT+TGG | + | chr7.1:45859074-45859093 | None:intergenic | 50.0% |
| ! | GAGGGAGTACGTGATAGAAC+AGG | + | chr7.1:45858506-45858525 | None:intergenic | 50.0% |
| !! | CTCTACCAGGAGTTTTAGCC+TGG | + | chr7.1:45858366-45858385 | None:intergenic | 50.0% |
| !! | GTTTTAGCCTGGCGATGAAG+AGG | + | chr7.1:45858355-45858374 | None:intergenic | 50.0% |
| !!! | CAGGGTTGCTGCTTTTTCTG+GGG | - | chr7.1:45859177-45859196 | MS.gene23695:intron | 50.0% |
| !!! | CCAGGGTTGCTGCTTTTTCT+GGG | - | chr7.1:45859176-45859195 | MS.gene23695:intron | 50.0% |
| !!! | GGGTTGATCATTTTGGAGCC+AGG | + | chr7.1:45858055-45858074 | None:intergenic | 50.0% |
| !!! | TCCAGGGTTGCTGCTTTTTC+TGG | - | chr7.1:45859175-45859194 | MS.gene23695:intron | 50.0% |
| AATGCACCAGGCACACCCAA+CGG | - | chr7.1:45859027-45859046 | MS.gene23695:intron | 55.0% | |
| ACGTTCACCTCTTCATCGCC+AGG | - | chr7.1:45858345-45858364 | MS.gene23695:intron | 55.0% | |
| AGTGACCCTGCATCTGCTGA+TGG | - | chr7.1:45858952-45858971 | MS.gene23695:intron | 55.0% | |
| CATCGCCAGGCTAAAACTCC+TGG | - | chr7.1:45858358-45858377 | MS.gene23695:intron | 55.0% | |
| CCCAGAAAAAGCAGCAACCC+TGG | + | chr7.1:45859179-45859198 | None:intergenic | 55.0% | |
| GAACCTACTCCATGACCTCC+AGG | + | chr7.1:45858265-45858284 | None:intergenic | 55.0% | |
| GACAGCAGTCATGGTACACC+TGG | - | chr7.1:45858418-45858437 | MS.gene23695:CDS | 55.0% | |
| GGTCTCAATCGGGATCTTCC+AGG | + | chr7.1:45858439-45858458 | None:intergenic | 55.0% | |
| ATGCACCAGGCACACCCAAC+GGG | - | chr7.1:45859028-45859047 | MS.gene23695:intron | 60.0% | |
| CGTCCTGGAGGTCATGGAGT+AGG | - | chr7.1:45858259-45858278 | MS.gene23695:intron | 60.0% | |
| GTTGCGGCTGGAAATGCACC+AGG | - | chr7.1:45859015-45859034 | MS.gene23695:intron | 60.0% | |
| ! | GCGTGAGGAGAAGCACGTTG+CGG | - | chr7.1:45858999-45859018 | MS.gene23695:intron | 60.0% |
| CCATGACCTCCAGGACGAGC+CGG | + | chr7.1:45858256-45858275 | None:intergenic | 65.0% | |
| GATCTCCCGTTGGGTGTGCC+TGG | + | chr7.1:45859036-45859055 | None:intergenic | 65.0% | |
| ! | GAGGAGAAGCACGTTGCGGC+TGG | - | chr7.1:45859003-45859022 | MS.gene23695:intron | 65.0% |
| !! | GTTAACTCGCCGGCTCGTCC+TGG | - | chr7.1:45858244-45858263 | MS.gene23695:intron | 65.0% |
| ! | CCGGCTCGTCCTGGAGGTCA+TGG | - | chr7.1:45858253-45858272 | MS.gene23695:intron | 70.0% |
| !! | AACTCGCCGGCTCGTCCTGG+AGG | - | chr7.1:45858247-45858266 | MS.gene23695:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 45857682 | 45859209 | 45857682 | ID=MS.gene23695 |
| chr7.1 | mRNA | 45857682 | 45859209 | 45857682 | ID=MS.gene23695.t1;Parent=MS.gene23695 |
| chr7.1 | exon | 45859180 | 45859209 | 45859180 | ID=MS.gene23695.t1.exon1;Parent=MS.gene23695.t1 |
| chr7.1 | CDS | 45859180 | 45859209 | 45859180 | ID=cds.MS.gene23695.t1;Parent=MS.gene23695.t1 |
| chr7.1 | exon | 45858411 | 45858929 | 45858411 | ID=MS.gene23695.t1.exon2;Parent=MS.gene23695.t1 |
| chr7.1 | CDS | 45858411 | 45858929 | 45858411 | ID=cds.MS.gene23695.t1;Parent=MS.gene23695.t1 |
| chr7.1 | exon | 45857796 | 45857984 | 45857796 | ID=MS.gene23695.t1.exon3;Parent=MS.gene23695.t1 |
| chr7.1 | CDS | 45857796 | 45857984 | 45857796 | ID=cds.MS.gene23695.t1;Parent=MS.gene23695.t1 |
| chr7.1 | exon | 45857682 | 45857711 | 45857682 | ID=MS.gene23695.t1.exon4;Parent=MS.gene23695.t1 |
| chr7.1 | CDS | 45857682 | 45857711 | 45857682 | ID=cds.MS.gene23695.t1;Parent=MS.gene23695.t1 |
| Gene Sequence |
| Protein sequence |
