Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23785.t1 | XP_024628133.1 | 94.6 | 166 | 9 | 0 | 1 | 166 | 1 | 166 | 3.30E-85 | 324.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23785.t1 | A2A1A0 | 35.1 | 154 | 97 | 1 | 13 | 166 | 15 | 165 | 1.3e-21 | 104.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23785.t1 | G7L9H5 | 94.6 | 166 | 9 | 0 | 1 | 166 | 1 | 166 | 2.4e-85 | 324.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049369 | MS.gene23785 | 0.808139 | 3.59E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene23785 | 0.807315 | 5.37E-50 | -1.69E-46 |
| MS.gene049614 | MS.gene23785 | 0.821734 | 3.45E-53 | -1.69E-46 |
| MS.gene049661 | MS.gene23785 | 0.824799 | 6.64E-54 | -1.69E-46 |
| MS.gene049662 | MS.gene23785 | 0.818632 | 1.77E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene23785 | 0.815782 | 7.75E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene23785 | 0.826445 | 2.70E-54 | -1.69E-46 |
| MS.gene050397 | MS.gene23785 | 0.802184 | 6.33E-49 | -1.69E-46 |
| MS.gene050404 | MS.gene23785 | 0.813948 | 1.98E-51 | -1.69E-46 |
| MS.gene050406 | MS.gene23785 | 0.802419 | 5.66E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene23785 | 0.823584 | 1.28E-53 | -1.69E-46 |
| MS.gene050770 | MS.gene23785 | 0.824041 | 1.00E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene23785 | 0.817687 | 2.90E-52 | -1.69E-46 |
| MS.gene051471 | MS.gene23785 | 0.838218 | 3.28E-57 | -1.69E-46 |
| MS.gene052078 | MS.gene23785 | 0.825224 | 5.27E-54 | -1.69E-46 |
| MS.gene052178 | MS.gene23785 | 0.817401 | 3.36E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene23785 | 0.810235 | 1.27E-50 | -1.69E-46 |
| MS.gene052290 | MS.gene23785 | 0.859091 | 5.26E-63 | -1.69E-46 |
| MS.gene052310 | MS.gene23785 | 0.823739 | 1.18E-53 | -1.69E-46 |
| MS.gene052326 | MS.gene23785 | 0.829094 | 6.24E-55 | -1.69E-46 |
| MS.gene052340 | MS.gene23785 | 0.828055 | 1.11E-54 | -1.69E-46 |
| MS.gene053009 | MS.gene23785 | 0.806835 | 6.78E-50 | -1.69E-46 |
| MS.gene053073 | MS.gene23785 | 0.81485 | 1.25E-51 | -1.69E-46 |
| MS.gene053322 | MS.gene23785 | 0.805821 | 1.11E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene23785 | 0.836313 | 1.01E-56 | -1.69E-46 |
| MS.gene054123 | MS.gene23785 | 0.848845 | 4.73E-60 | -1.69E-46 |
| MS.gene054376 | MS.gene23785 | 0.823017 | 1.74E-53 | -1.69E-46 |
| MS.gene054802 | MS.gene23785 | 0.802296 | 6.00E-49 | -1.69E-46 |
| MS.gene054803 | MS.gene23785 | 0.802993 | 4.31E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene23785 | 0.80491 | 1.72E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene23785 | 0.802131 | 6.49E-49 | -1.69E-46 |
| MS.gene055254 | MS.gene23785 | 0.85104 | 1.15E-60 | -1.69E-46 |
| MS.gene055277 | MS.gene23785 | 0.82706 | 1.93E-54 | -1.69E-46 |
| MS.gene055397 | MS.gene23785 | 0.835335 | 1.78E-56 | -1.69E-46 |
| MS.gene055412 | MS.gene23785 | 0.80522 | 1.48E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene23785 | 0.811986 | 5.32E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene23785 | 0.828114 | 1.08E-54 | -1.69E-46 |
| MS.gene055896 | MS.gene23785 | 0.808595 | 2.87E-50 | -1.69E-46 |
| MS.gene056609 | MS.gene23785 | 0.866659 | 2.43E-65 | -1.69E-46 |
| MS.gene056612 | MS.gene23785 | 0.834898 | 2.30E-56 | -1.69E-46 |
| MS.gene056659 | MS.gene23785 | 0.823645 | 1.24E-53 | -1.69E-46 |
| MS.gene056719 | MS.gene23785 | 0.815562 | 8.68E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene23785 | 0.834125 | 3.59E-56 | -1.69E-46 |
| MS.gene058082 | MS.gene23785 | 0.810721 | 1.00E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene23785 | 0.835993 | 1.21E-56 | -1.69E-46 |
| MS.gene058928 | MS.gene23785 | 0.832912 | 7.21E-56 | -1.69E-46 |
| MS.gene059597 | MS.gene23785 | 0.815675 | 8.19E-52 | -1.69E-46 |
| MS.gene05959 | MS.gene23785 | 0.836616 | 8.43E-57 | -1.69E-46 |
| MS.gene059688 | MS.gene23785 | 0.811732 | 6.04E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene23785 | 0.814187 | 1.75E-51 | -1.69E-46 |
| MS.gene059695 | MS.gene23785 | 0.808309 | 3.30E-50 | -1.69E-46 |
| MS.gene059708 | MS.gene23785 | 0.825269 | 5.14E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene23785 | 0.853245 | 2.71E-61 | -1.69E-46 |
| MS.gene059960 | MS.gene23785 | 0.814938 | 1.19E-51 | -1.69E-46 |
| MS.gene059974 | MS.gene23785 | 0.805199 | 1.50E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene23785 | 0.813845 | 2.08E-51 | -1.69E-46 |
| MS.gene060496 | MS.gene23785 | 0.80473 | 1.88E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene23785 | 0.800159 | 1.64E-48 | -1.69E-46 |
| MS.gene060818 | MS.gene23785 | 0.801882 | 7.30E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene23785 | 0.848339 | 6.53E-60 | -1.69E-46 |
| MS.gene061049 | MS.gene23785 | 0.831718 | 1.42E-55 | -1.69E-46 |
| MS.gene061051 | MS.gene23785 | -0.813604 | 2.35E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene23785 | 0.805951 | 1.04E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23785.t1 | MTR_8g074050 | 94.578 | 166 | 9 | 0 | 1 | 166 | 1 | 166 | 2.67e-114 | 328 |
| MS.gene23785.t1 | MTR_8g074070 | 91.124 | 169 | 15 | 0 | 1 | 169 | 1 | 169 | 1.88e-113 | 325 |
| MS.gene23785.t1 | MTR_8g074070 | 92.169 | 166 | 13 | 0 | 1 | 166 | 1 | 166 | 1.20e-112 | 324 |
| MS.gene23785.t1 | MTR_3g117420 | 73.494 | 166 | 44 | 0 | 1 | 166 | 1 | 166 | 7.90e-85 | 253 |
| MS.gene23785.t1 | MTR_3g117485 | 66.463 | 164 | 49 | 4 | 7 | 166 | 5 | 166 | 6.61e-67 | 207 |
| MS.gene23785.t1 | MTR_4g116010 | 48.387 | 155 | 72 | 3 | 13 | 167 | 15 | 161 | 3.17e-43 | 147 |
| MS.gene23785.t1 | MTR_3g117485 | 69.048 | 84 | 23 | 2 | 85 | 166 | 12 | 94 | 1.39e-32 | 117 |
| MS.gene23785.t1 | MTR_3g026150 | 41.830 | 153 | 86 | 2 | 14 | 166 | 23 | 172 | 8.41e-32 | 115 |
| MS.gene23785.t1 | MTR_3g026150 | 41.830 | 153 | 86 | 2 | 14 | 166 | 23 | 172 | 2.89e-31 | 115 |
| MS.gene23785.t1 | MTR_7g045650 | 41.880 | 117 | 66 | 1 | 50 | 166 | 58 | 172 | 4.82e-30 | 112 |
| MS.gene23785.t1 | MTR_7g062550 | 38.312 | 154 | 91 | 3 | 14 | 167 | 24 | 173 | 3.86e-29 | 110 |
| MS.gene23785.t1 | MTR_7g062580 | 36.913 | 149 | 90 | 3 | 14 | 162 | 19 | 163 | 5.27e-27 | 104 |
| MS.gene23785.t1 | MTR_7g063730 | 41.593 | 113 | 64 | 1 | 51 | 163 | 63 | 173 | 8.19e-27 | 104 |
| MS.gene23785.t1 | MTR_7g062600 | 35.948 | 153 | 94 | 3 | 14 | 166 | 15 | 163 | 2.32e-26 | 102 |
| MS.gene23785.t1 | MTR_7g062570 | 39.130 | 115 | 68 | 1 | 52 | 166 | 55 | 167 | 8.04e-26 | 101 |
| MS.gene23785.t1 | MTR_2g437380 | 35.256 | 156 | 93 | 4 | 15 | 167 | 17 | 167 | 1.79e-24 | 97.8 |
| MS.gene23785.t1 | MTR_2g072930 | 35.294 | 153 | 92 | 2 | 14 | 164 | 16 | 163 | 2.02e-24 | 93.6 |
| MS.gene23785.t1 | MTR_2g072910 | 35.948 | 153 | 91 | 2 | 14 | 164 | 16 | 163 | 5.12e-23 | 92.4 |
| MS.gene23785.t1 | MTR_2g072910 | 35.948 | 153 | 91 | 2 | 14 | 164 | 16 | 163 | 8.98e-23 | 93.2 |
| MS.gene23785.t1 | MTR_3g070860 | 33.775 | 151 | 96 | 2 | 15 | 163 | 15 | 163 | 2.39e-22 | 92.0 |
| MS.gene23785.t1 | MTR_5g048570 | 34.641 | 153 | 93 | 2 | 14 | 166 | 12 | 157 | 2.70e-22 | 91.7 |
| MS.gene23785.t1 | MTR_5g055900 | 37.013 | 154 | 90 | 3 | 14 | 166 | 12 | 159 | 2.99e-22 | 91.7 |
| MS.gene23785.t1 | MTR_2g072890 | 33.987 | 153 | 93 | 3 | 14 | 163 | 16 | 163 | 3.34e-22 | 91.7 |
| MS.gene23785.t1 | MTR_5g048550 | 39.091 | 110 | 65 | 1 | 51 | 160 | 46 | 153 | 3.48e-21 | 88.6 |
| MS.gene23785.t1 | MTR_4g115990 | 38.129 | 139 | 51 | 4 | 33 | 167 | 33 | 140 | 1.14e-20 | 87.0 |
| MS.gene23785.t1 | MTR_5g055690 | 39.316 | 117 | 68 | 2 | 51 | 166 | 46 | 160 | 1.12e-19 | 83.6 |
| MS.gene23785.t1 | MTR_0009s0050 | 35.714 | 154 | 92 | 3 | 14 | 166 | 12 | 159 | 1.15e-19 | 84.7 |
| MS.gene23785.t1 | MTR_7g068650 | 34.483 | 116 | 74 | 1 | 50 | 163 | 52 | 167 | 1.23e-19 | 84.7 |
| MS.gene23785.t1 | MTR_0009s0050 | 35.714 | 154 | 92 | 3 | 14 | 166 | 12 | 159 | 1.45e-19 | 84.3 |
| MS.gene23785.t1 | MTR_5g055690 | 39.316 | 117 | 68 | 2 | 51 | 166 | 46 | 160 | 2.55e-19 | 83.6 |
| MS.gene23785.t1 | MTR_5g011250 | 28.395 | 162 | 110 | 3 | 12 | 167 | 5 | 166 | 5.74e-19 | 82.8 |
| MS.gene23785.t1 | MTR_5g048470 | 33.333 | 153 | 99 | 2 | 14 | 166 | 17 | 166 | 6.57e-19 | 82.4 |
| MS.gene23785.t1 | MTR_4g015790 | 34.167 | 120 | 77 | 1 | 46 | 163 | 56 | 175 | 6.89e-19 | 82.4 |
| MS.gene23785.t1 | MTR_5g082750 | 31.126 | 151 | 100 | 2 | 15 | 163 | 14 | 162 | 1.79e-18 | 81.3 |
| MS.gene23785.t1 | MTR_5g048850 | 31.169 | 154 | 99 | 3 | 14 | 166 | 12 | 159 | 6.99e-18 | 79.0 |
| MS.gene23785.t1 | MTR_5g048850 | 31.169 | 154 | 99 | 3 | 14 | 166 | 12 | 159 | 1.53e-17 | 78.6 |
| MS.gene23785.t1 | MTR_0328s0030 | 33.758 | 157 | 95 | 3 | 12 | 166 | 8 | 157 | 4.74e-17 | 77.4 |
| MS.gene23785.t1 | MTR_3g072820 | 33.333 | 123 | 72 | 4 | 48 | 166 | 38 | 154 | 5.17e-17 | 77.0 |
| MS.gene23785.t1 | MTR_7g062560 | 35.135 | 111 | 63 | 2 | 51 | 161 | 61 | 162 | 1.15e-16 | 76.3 |
| MS.gene23785.t1 | MTR_8g064200 | 32.258 | 155 | 97 | 3 | 14 | 166 | 17 | 165 | 1.32e-16 | 76.3 |
| MS.gene23785.t1 | MTR_8g064200 | 32.258 | 155 | 97 | 3 | 14 | 166 | 22 | 170 | 1.50e-16 | 75.9 |
| MS.gene23785.t1 | MTR_3g117430 | 54.412 | 68 | 14 | 1 | 101 | 168 | 5 | 55 | 1.71e-16 | 72.0 |
| MS.gene23785.t1 | MTR_5g055680 | 35.345 | 116 | 73 | 1 | 51 | 166 | 46 | 159 | 1.78e-16 | 75.9 |
| MS.gene23785.t1 | MTR_1g033810 | 33.621 | 116 | 77 | 0 | 51 | 166 | 46 | 161 | 4.11e-16 | 74.7 |
| MS.gene23785.t1 | MTR_5g055820 | 33.898 | 118 | 70 | 2 | 52 | 166 | 47 | 159 | 4.69e-16 | 74.7 |
| MS.gene23785.t1 | MTR_5g048740 | 34.395 | 157 | 94 | 3 | 12 | 166 | 8 | 157 | 5.38e-16 | 74.3 |
| MS.gene23785.t1 | MTR_0009s0410 | 30.000 | 160 | 103 | 3 | 9 | 166 | 6 | 158 | 1.03e-15 | 70.9 |
| MS.gene23785.t1 | MTR_3g026150 | 50.000 | 64 | 32 | 0 | 103 | 166 | 6 | 69 | 1.89e-15 | 72.0 |
| MS.gene23785.t1 | MTR_3g072810 | 29.375 | 160 | 95 | 6 | 13 | 166 | 4 | 151 | 2.27e-15 | 72.4 |
| MS.gene23785.t1 | MTR_2g437380 | 39.726 | 73 | 44 | 0 | 95 | 167 | 1 | 73 | 2.53e-15 | 71.6 |
| MS.gene23785.t1 | MTR_5g059130 | 32.773 | 119 | 74 | 3 | 50 | 166 | 42 | 156 | 7.69e-15 | 70.9 |
| MS.gene23785.t1 | MTR_0009s0480 | 30.000 | 160 | 103 | 3 | 9 | 166 | 6 | 158 | 2.35e-14 | 68.9 |
| MS.gene23785.t1 | MTR_0009s0480 | 28.834 | 163 | 101 | 4 | 9 | 166 | 6 | 158 | 3.22e-14 | 69.3 |
| MS.gene23785.t1 | MTR_5g055800 | 33.929 | 112 | 72 | 1 | 52 | 163 | 47 | 156 | 9.25e-14 | 68.2 |
| MS.gene23785.t1 | MTR_1g062110 | 30.000 | 160 | 101 | 5 | 13 | 166 | 25 | 179 | 2.40e-13 | 66.6 |
| MS.gene23785.t1 | MTR_1g062110 | 30.000 | 160 | 101 | 5 | 13 | 166 | 25 | 179 | 2.92e-13 | 66.6 |
| MS.gene23785.t1 | MTR_5g059140 | 31.933 | 119 | 73 | 3 | 52 | 166 | 42 | 156 | 1.04e-12 | 65.1 |
| MS.gene23785.t1 | MTR_5g065010 | 33.333 | 129 | 78 | 4 | 27 | 151 | 17 | 141 | 5.94e-11 | 60.1 |
| MS.gene23785.t1 | MTR_3g058610 | 25.439 | 114 | 84 | 1 | 51 | 163 | 38 | 151 | 6.34e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23785.t1 | AT1G49390 | 46.795 | 156 | 81 | 2 | 13 | 167 | 7 | 161 | 8.37e-44 | 148 |
| MS.gene23785.t1 | AT5G20400 | 43.871 | 155 | 85 | 2 | 13 | 166 | 7 | 160 | 9.32e-40 | 137 |
| MS.gene23785.t1 | AT5G54000 | 45.283 | 159 | 78 | 4 | 13 | 166 | 7 | 161 | 1.20e-39 | 137 |
| MS.gene23785.t1 | AT5G20550 | 42.581 | 155 | 87 | 2 | 13 | 166 | 7 | 160 | 7.63e-37 | 130 |
| MS.gene23785.t1 | AT1G49390 | 59.756 | 82 | 33 | 0 | 86 | 167 | 1 | 82 | 7.33e-33 | 118 |
| MS.gene23785.t1 | AT3G21420 | 41.026 | 156 | 89 | 2 | 15 | 167 | 17 | 172 | 8.28e-30 | 112 |
| MS.gene23785.t1 | AT5G54000 | 54.321 | 81 | 37 | 0 | 86 | 166 | 1 | 81 | 2.12e-29 | 108 |
| MS.gene23785.t1 | AT1G17020 | 43.590 | 117 | 66 | 0 | 50 | 166 | 51 | 167 | 1.40e-26 | 103 |
| MS.gene23785.t1 | AT4G25300 | 42.241 | 116 | 67 | 0 | 51 | 166 | 51 | 166 | 3.17e-25 | 99.8 |
| MS.gene23785.t1 | AT1G17010 | 37.580 | 157 | 90 | 3 | 14 | 166 | 16 | 168 | 1.83e-24 | 97.8 |
| MS.gene23785.t1 | AT1G78550 | 38.095 | 147 | 86 | 2 | 21 | 166 | 25 | 167 | 1.36e-22 | 92.8 |
| MS.gene23785.t1 | AT2G38240 | 36.975 | 119 | 70 | 2 | 46 | 163 | 42 | 156 | 5.41e-21 | 88.2 |
| MS.gene23785.t1 | AT4G25310 | 37.179 | 156 | 88 | 5 | 14 | 166 | 15 | 163 | 5.13e-19 | 82.4 |
| MS.gene23785.t1 | AT4G25310 | 37.179 | 156 | 88 | 5 | 14 | 166 | 15 | 163 | 7.55e-19 | 82.4 |
| MS.gene23785.t1 | AT3G11180 | 34.400 | 125 | 80 | 1 | 45 | 169 | 88 | 210 | 1.28e-18 | 82.0 |
| MS.gene23785.t1 | AT3G11180 | 34.400 | 125 | 80 | 1 | 45 | 169 | 88 | 210 | 1.32e-18 | 82.0 |
| MS.gene23785.t1 | AT4G22880 | 32.500 | 120 | 77 | 2 | 51 | 166 | 46 | 165 | 9.16e-18 | 79.3 |
| MS.gene23785.t1 | AT4G22880 | 32.500 | 120 | 77 | 2 | 51 | 166 | 46 | 165 | 9.16e-18 | 79.3 |
| MS.gene23785.t1 | AT4G22880 | 32.500 | 120 | 77 | 2 | 51 | 166 | 46 | 165 | 9.16e-18 | 79.3 |
| MS.gene23785.t1 | AT3G55970 | 33.913 | 115 | 74 | 2 | 52 | 164 | 52 | 166 | 1.96e-17 | 77.8 |
| MS.gene23785.t1 | AT3G55970 | 33.913 | 115 | 74 | 2 | 52 | 164 | 52 | 166 | 3.63e-17 | 77.8 |
| MS.gene23785.t1 | AT5G05600 | 32.174 | 115 | 76 | 1 | 51 | 163 | 61 | 175 | 4.40e-17 | 77.0 |
| MS.gene23785.t1 | AT5G05600 | 29.801 | 151 | 102 | 2 | 15 | 163 | 27 | 175 | 1.14e-16 | 76.6 |
| MS.gene23785.t1 | AT5G08640 | 29.060 | 117 | 80 | 2 | 52 | 166 | 40 | 155 | 2.89e-16 | 75.1 |
| MS.gene23785.t1 | AT5G08640 | 29.060 | 117 | 80 | 2 | 52 | 166 | 40 | 155 | 2.89e-16 | 75.1 |
| MS.gene23785.t1 | AT2G36690 | 33.540 | 161 | 95 | 6 | 13 | 166 | 19 | 174 | 1.16e-15 | 73.6 |
| MS.gene23785.t1 | AT2G36690 | 33.540 | 161 | 95 | 6 | 13 | 166 | 19 | 174 | 1.16e-15 | 73.6 |
| MS.gene23785.t1 | AT5G63580 | 32.456 | 114 | 69 | 4 | 52 | 163 | 19 | 126 | 2.40e-15 | 71.6 |
| MS.gene23785.t1 | AT5G63580 | 32.231 | 121 | 74 | 4 | 45 | 163 | 12 | 126 | 2.46e-15 | 71.6 |
| MS.gene23785.t1 | AT1G78550 | 43.182 | 88 | 49 | 1 | 79 | 166 | 3 | 89 | 4.82e-14 | 68.6 |
| MS.gene23785.t1 | AT5G43935 | 30.508 | 118 | 73 | 4 | 52 | 167 | 19 | 129 | 5.10e-14 | 68.6 |
| MS.gene23785.t1 | AT5G63590 | 29.268 | 123 | 77 | 3 | 48 | 166 | 10 | 126 | 8.98e-14 | 67.8 |
| MS.gene23785.t1 | AT5G63595 | 28.800 | 125 | 75 | 4 | 44 | 166 | 19 | 131 | 1.58e-13 | 67.0 |
| MS.gene23785.t1 | AT3G19010 | 33.594 | 128 | 70 | 5 | 52 | 166 | 28 | 153 | 4.26e-13 | 66.2 |
| MS.gene23785.t1 | AT5G63600 | 32.203 | 118 | 68 | 4 | 48 | 163 | 29 | 136 | 4.26e-13 | 66.2 |
| MS.gene23785.t1 | AT5G63600 | 32.203 | 118 | 68 | 4 | 48 | 163 | 29 | 136 | 4.50e-13 | 66.2 |
| MS.gene23785.t1 | AT3G19010 | 33.594 | 128 | 70 | 5 | 52 | 166 | 28 | 153 | 6.95e-13 | 65.5 |
| MS.gene23785.t1 | AT3G19010 | 33.594 | 128 | 70 | 5 | 52 | 166 | 28 | 153 | 6.95e-13 | 65.5 |
| MS.gene23785.t1 | AT3G19010 | 33.594 | 128 | 70 | 5 | 52 | 166 | 28 | 153 | 8.04e-13 | 65.1 |
| MS.gene23785.t1 | AT3G19000 | 31.818 | 154 | 80 | 7 | 27 | 166 | 16 | 158 | 1.96e-12 | 63.9 |
| MS.gene23785.t1 | AT3G19000 | 31.818 | 154 | 80 | 7 | 27 | 166 | 16 | 158 | 2.88e-12 | 63.9 |
| MS.gene23785.t1 | AT1G55290 | 29.870 | 154 | 94 | 6 | 14 | 162 | 25 | 169 | 3.94e-12 | 63.5 |
| MS.gene23785.t1 | AT1G44090 | 35.185 | 108 | 64 | 3 | 43 | 146 | 54 | 159 | 8.36e-12 | 62.8 |
| MS.gene23785.t1 | AT5G07480 | 33.898 | 118 | 67 | 6 | 52 | 163 | 44 | 156 | 2.99e-11 | 60.8 |
| MS.gene23785.t1 | AT3G60290 | 29.870 | 154 | 99 | 5 | 14 | 163 | 15 | 163 | 5.05e-11 | 60.5 |
| MS.gene23785.t1 | AT2G44800 | 31.624 | 117 | 78 | 2 | 48 | 163 | 48 | 163 | 8.18e-11 | 59.7 |
| MS.gene23785.t1 | AT4G16330 | 32.500 | 120 | 70 | 5 | 52 | 166 | 67 | 180 | 8.70e-11 | 59.7 |
Find 32 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTCTTGTGGCTTCTTTC+TGG | 0.080795 | 8.4:+30540685 | MS.gene23785:CDS |
| ACCTGAAATCAATGGGGTTT+TGG | 0.196014 | 8.4:-30541061 | None:intergenic |
| TCATTATAGATATAATTATT+TGG | 0.207972 | 8.4:-30540533 | None:intergenic |
| CCCAAAACCCCATTGATTTC+AGG | 0.235480 | 8.4:+30541060 | MS.gene23785:CDS |
| CAAAACAATATTGAAGGATA+TGG | 0.284911 | 8.4:+30540939 | MS.gene23785:CDS |
| CAGAAAATCAAATGCTTGAT+TGG | 0.314111 | 8.4:+30540979 | MS.gene23785:CDS |
| ATCAAAGGAATTTCAAACTT+TGG | 0.350874 | 8.4:+30541036 | MS.gene23785:CDS |
| ATCTATAATGAAGGTGGTGT+TGG | 0.409589 | 8.4:+30540545 | MS.gene23785:CDS |
| AATTTATACCTGAAATCAAT+GGG | 0.410650 | 8.4:-30541068 | None:intergenic |
| TTGAAATTCCTTTGATCTTG+AGG | 0.440037 | 8.4:-30541029 | None:intergenic |
| GAATTTATACCTGAAATCAA+TGG | 0.446659 | 8.4:-30541069 | None:intergenic |
| CAAGCTGCACTTCATTCTTG+TGG | 0.451802 | 8.4:+30540674 | MS.gene23785:CDS |
| TGAGATAGTTGGTAGTAAAT+CGG | 0.451831 | 8.4:+30540475 | MS.gene23785:CDS |
| AGCTCATGTTGTGAAGTAGA+TGG | 0.457466 | 8.4:-30540641 | None:intergenic |
| AATAATTATATCTATAATGA+AGG | 0.493436 | 8.4:+30540536 | MS.gene23785:CDS |
| AGGGAACAAAACAATATTGA+AGG | 0.499241 | 8.4:+30540933 | MS.gene23785:CDS |
| TCGGCAGAGGTTGAGATAGT+TGG | 0.502686 | 8.4:+30540464 | MS.gene23785:CDS |
| AGTAGATGGAGAAGTGAGGT+TGG | 0.516853 | 8.4:-30540627 | None:intergenic |
| TAGTAAATCGGTTCAAGAGT+TGG | 0.532912 | 8.4:+30540487 | MS.gene23785:CDS |
| GCTCGTTTCTTGACAAAGTG+AGG | 0.541459 | 8.4:+30540856 | MS.gene23785:CDS |
| CACAAGAATGAAGTGCAGCT+TGG | 0.546880 | 8.4:-30540673 | None:intergenic |
| AGGTTGGCAATGTCAATGAT+TGG | 0.563323 | 8.4:-30540611 | None:intergenic |
| AATTATATCTATAATGAAGG+TGG | 0.563549 | 8.4:+30540539 | MS.gene23785:CDS |
| CTCGTTTCTTGACAAAGTGA+GGG | 0.576302 | 8.4:+30540857 | MS.gene23785:CDS |
| TTATAGATATAATTATTTGG+TGG | 0.585099 | 8.4:-30540530 | None:intergenic |
| GAAACGAGCTTGTCATCCCA+TGG | 0.585363 | 8.4:-30540842 | None:intergenic |
| ACATGAAAATCTGATTCTGA+AGG | 0.589628 | 8.4:-30540587 | None:intergenic |
| AGGTACATCCTCAAGATCAA+AGG | 0.594954 | 8.4:+30541021 | MS.gene23785:CDS |
| GCTGTTCAGGTGATAAACCA+TGG | 0.598562 | 8.4:+30540825 | MS.gene23785:intron |
| CTGTTCAGGTGATAAACCAT+GGG | 0.603760 | 8.4:+30540826 | MS.gene23785:intron |
| GTGAAGTAGATGGAGAAGTG+AGG | 0.653571 | 8.4:-30540631 | None:intergenic |
| ATTTATACCTGAAATCAATG+GGG | 0.672971 | 8.4:-30541067 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTATATCTATAATGA+AGG | + | chr8.4:30540536-30540555 | MS.gene23785:CDS | 10.0% |
| !! | TCATTATAGATATAATTATT+TGG | - | chr8.4:30540536-30540555 | None:intergenic | 10.0% |
| !!! | TTTAGATTTAAATGTATTTT+CGG | + | chr8.4:30541206-30541225 | MS.gene23785:intron | 10.0% |
| !! | TTATAGATATAATTATTTGG+TGG | - | chr8.4:30540533-30540552 | None:intergenic | 15.0% |
| !!! | AAAATAAATTCAAATGGATT+TGG | - | chr8.4:30541331-30541350 | None:intergenic | 15.0% |
| !!! | AAATCCATTTGAATTTATTT+TGG | + | chr8.4:30541330-30541349 | MS.gene23785:intron | 15.0% |
| !!! | CCACTTAATATTATTTTAAA+TGG | + | chr8.4:30541095-30541114 | MS.gene23785:intron | 15.0% |
| !!! | CCATTTAAAATAATATTAAG+TGG | - | chr8.4:30541098-30541117 | None:intergenic | 15.0% |
| !! | AACACCAAAATAAATTCAAA+TGG | - | chr8.4:30541337-30541356 | None:intergenic | 20.0% |
| !! | AATTATATCTATAATGAAGG+TGG | + | chr8.4:30540539-30540558 | MS.gene23785:CDS | 20.0% |
| !! | AATTTATACCTGAAATCAAT+GGG | - | chr8.4:30541071-30541090 | None:intergenic | 20.0% |
| !! | ACATAACTAAAATAAAGGTA+TGG | - | chr8.4:30540765-30540784 | None:intergenic | 20.0% |
| !! | GGAATACATAACTAAAATAA+AGG | - | chr8.4:30540770-30540789 | None:intergenic | 20.0% |
| !! | TAAAGTATAAAAATATCCCA+TGG | - | chr8.4:30541175-30541194 | None:intergenic | 20.0% |
| !!! | AGTAGCAAATACTTTTTTTT+TGG | + | chr8.4:30541123-30541142 | MS.gene23785:intron | 20.0% |
| !!! | ATTTGAATTTATTTTGGTGT+TGG | + | chr8.4:30541336-30541355 | MS.gene23785:intron | 20.0% |
| ! | AAGAAAAGCAAAAATATGCA+AGG | + | chr8.4:30540913-30540932 | MS.gene23785:CDS | 25.0% |
| ! | AGAAAAGCAAAAATATGCAA+GGG | + | chr8.4:30540914-30540933 | MS.gene23785:CDS | 25.0% |
| ! | ATATATACCTTACAGTTACA+AGG | - | chr8.4:30541248-30541267 | None:intergenic | 25.0% |
| ! | ATCAAAGGAATTTCAAACTT+TGG | + | chr8.4:30541036-30541055 | MS.gene23785:CDS | 25.0% |
| ! | ATGTAAATGAAGAATCATGT+CGG | + | chr8.4:30541414-30541433 | MS.gene23785:intron | 25.0% |
| ! | ATTTATACCTGAAATCAATG+GGG | - | chr8.4:30541070-30541089 | None:intergenic | 25.0% |
| ! | CAAAACAATATTGAAGGATA+TGG | + | chr8.4:30540939-30540958 | MS.gene23785:CDS | 25.0% |
| ! | GAATTTATACCTGAAATCAA+TGG | - | chr8.4:30541072-30541091 | None:intergenic | 25.0% |
| ! | TAATACTTTAATAGCTCCAT+GGG | + | chr8.4:30541156-30541175 | MS.gene23785:intron | 25.0% |
| ! | TATAAATAAATGTTTGCAGC+TGG | - | chr8.4:30540742-30540761 | None:intergenic | 25.0% |
| !! | AAAACAGTTGCGAATAATTT+TGG | - | chr8.4:30540803-30540822 | None:intergenic | 25.0% |
| !!! | AATTTATTTTGGTGTTGGTT+TGG | + | chr8.4:30541341-30541360 | MS.gene23785:intron | 25.0% |
| !!! | ATTTATTTTGGTGTTGGTTT+GGG | + | chr8.4:30541342-30541361 | MS.gene23785:intron | 25.0% |
| !!! | TATTTTTGCTTTTCTTCCTT+TGG | - | chr8.4:30540909-30540928 | None:intergenic | 25.0% |
| AACAATATACCGAATGTATC+TGG | + | chr8.4:30541465-30541484 | MS.gene23785:intron | 30.0% | |
| ACATGAAAATCTGATTCTGA+AGG | - | chr8.4:30540590-30540609 | None:intergenic | 30.0% | |
| AGGGAACAAAACAATATTGA+AGG | + | chr8.4:30540933-30540952 | MS.gene23785:CDS | 30.0% | |
| ATATAACTGCCAGATACATT+CGG | - | chr8.4:30541477-30541496 | None:intergenic | 30.0% | |
| CAGAAAATCAAATGCTTGAT+TGG | + | chr8.4:30540979-30540998 | MS.gene23785:CDS | 30.0% | |
| CTAATACTTTAATAGCTCCA+TGG | + | chr8.4:30541155-30541174 | MS.gene23785:intron | 30.0% | |
| TTGAAATTCCTTTGATCTTG+AGG | - | chr8.4:30541032-30541051 | None:intergenic | 30.0% | |
| !! | GTGTGACAGAATATTTTTGA+AGG | + | chr8.4:30541001-30541020 | MS.gene23785:CDS | 30.0% |
| !! | TGAGATAGTTGGTAGTAAAT+CGG | + | chr8.4:30540475-30540494 | MS.gene23785:CDS | 30.0% |
| !!! | AATAATTTTGGAGCTTAAGG+AGG | - | chr8.4:30540791-30540810 | None:intergenic | 30.0% |
| !!! | GCAATTTTTTGAACTTCCAA+AGG | + | chr8.4:30540890-30540909 | MS.gene23785:CDS | 30.0% |
| ATCTATAATGAAGGTGGTGT+TGG | + | chr8.4:30540545-30540564 | MS.gene23785:CDS | 35.0% | |
| CACATCGAGACGTTATAAAA+TGG | + | chr8.4:30541275-30541294 | MS.gene23785:intron | 35.0% | |
| TAAATGAAGAATCATGTCGG+CGG | + | chr8.4:30541417-30541436 | MS.gene23785:intron | 35.0% | |
| TCGAGACGTTATAAAATGGT+TGG | + | chr8.4:30541279-30541298 | MS.gene23785:intron | 35.0% | |
| ! | TAGTAAATCGGTTCAAGAGT+TGG | + | chr8.4:30540487-30540506 | MS.gene23785:CDS | 35.0% |
| !!! | GCGAATAATTTTGGAGCTTA+AGG | - | chr8.4:30540794-30540813 | None:intergenic | 35.0% |
| AGCTCATGTTGTGAAGTAGA+TGG | - | chr8.4:30540644-30540663 | None:intergenic | 40.0% | |
| AGGTACATCCTCAAGATCAA+AGG | + | chr8.4:30541021-30541040 | MS.gene23785:CDS | 40.0% | |
| AGGTTGGCAATGTCAATGAT+TGG | - | chr8.4:30540614-30540633 | None:intergenic | 40.0% | |
| ATGGTTTATCACCTGAACAG+CGG | - | chr8.4:30540826-30540845 | None:intergenic | 40.0% | |
| CTCGTTTCTTGACAAAGTGA+GGG | + | chr8.4:30540857-30540876 | MS.gene23785:CDS | 40.0% | |
| CTGTTCAGGTGATAAACCAT+GGG | + | chr8.4:30540826-30540845 | MS.gene23785:intron | 40.0% | |
| TCATTCTTGTGGCTTCTTTC+TGG | + | chr8.4:30540685-30540704 | MS.gene23785:CDS | 40.0% | |
| ! | ACCTGAAATCAATGGGGTTT+TGG | - | chr8.4:30541064-30541083 | None:intergenic | 40.0% |
| ! | CCTGAAATCAATGGGGTTTT+GGG | - | chr8.4:30541063-30541082 | None:intergenic | 40.0% |
| ! | CTGAAATCAATGGGGTTTTG+GGG | - | chr8.4:30541062-30541081 | None:intergenic | 40.0% |
| !! | AGCTTAGCCTTGTAACTGTA+AGG | + | chr8.4:30541238-30541257 | MS.gene23785:intron | 40.0% |
| AGTAGATGGAGAAGTGAGGT+TGG | - | chr8.4:30540630-30540649 | None:intergenic | 45.0% | |
| CAAGCTGCACTTCATTCTTG+TGG | + | chr8.4:30540674-30540693 | MS.gene23785:CDS | 45.0% | |
| CACAAGAATGAAGTGCAGCT+TGG | - | chr8.4:30540676-30540695 | None:intergenic | 45.0% | |
| GCTCGTTTCTTGACAAAGTG+AGG | + | chr8.4:30540856-30540875 | MS.gene23785:CDS | 45.0% | |
| GCTGTTCAGGTGATAAACCA+TGG | + | chr8.4:30540825-30540844 | MS.gene23785:intron | 45.0% | |
| GTGAAGTAGATGGAGAAGTG+AGG | - | chr8.4:30540634-30540653 | None:intergenic | 45.0% | |
| !! | CCCAAAACCCCATTGATTTC+AGG | + | chr8.4:30541060-30541079 | MS.gene23785:CDS | 45.0% |
| GAAACGAGCTTGTCATCCCA+TGG | - | chr8.4:30540845-30540864 | None:intergenic | 50.0% | |
| TCGGCAGAGGTTGAGATAGT+TGG | + | chr8.4:30540464-30540483 | MS.gene23785:CDS | 50.0% | |
| ! | GCAACTGTTTTCCGCTGTTC+AGG | + | chr8.4:30540812-30540831 | MS.gene23785:intron | 50.0% |
| GTCGGCGGATATGTCAATGC+AGG | + | chr8.4:30541432-30541451 | MS.gene23785:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 30540455 | 30541503 | 30540455 | ID=MS.gene23785 |
| chr8.4 | mRNA | 30540455 | 30541503 | 30540455 | ID=MS.gene23785.t1;Parent=MS.gene23785 |
| chr8.4 | exon | 30540455 | 30540706 | 30540455 | ID=MS.gene23785.t1.exon1;Parent=MS.gene23785.t1 |
| chr8.4 | CDS | 30540455 | 30540706 | 30540455 | ID=cds.MS.gene23785.t1;Parent=MS.gene23785.t1 |
| chr8.4 | exon | 30540834 | 30541081 | 30540834 | ID=MS.gene23785.t1.exon2;Parent=MS.gene23785.t1 |
| chr8.4 | CDS | 30540834 | 30541081 | 30540834 | ID=cds.MS.gene23785.t1;Parent=MS.gene23785.t1 |
| chr8.4 | exon | 30541491 | 30541503 | 30541491 | ID=MS.gene23785.t1.exon3;Parent=MS.gene23785.t1 |
| chr8.4 | CDS | 30541491 | 30541503 | 30541491 | ID=cds.MS.gene23785.t1;Parent=MS.gene23785.t1 |
| Gene Sequence |
| Protein sequence |
