Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24003.t1 | AFK48581.1 | 92.2 | 347 | 16 | 1 | 1 | 347 | 1 | 336 | 1.00E-174 | 622.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24003.t1 | Q54M20 | 26.8 | 355 | 207 | 7 | 6 | 347 | 63 | 377 | 8.6e-29 | 129.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24003.t1 | I3T7T9 | 92.2 | 347 | 16 | 1 | 1 | 347 | 1 | 336 | 7.4e-175 | 622.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene24003 | 0.803847 | 2.87E-49 | -1.69E-46 |
| MS.gene049343 | MS.gene24003 | 0.820797 | 5.67E-53 | -1.69E-46 |
| MS.gene049501 | MS.gene24003 | 0.806748 | 7.07E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene24003 | 0.820747 | 5.83E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene24003 | 0.817752 | 2.80E-52 | -1.69E-46 |
| MS.gene050724 | MS.gene24003 | 0.820579 | 6.37E-53 | -1.69E-46 |
| MS.gene050844 | MS.gene24003 | 0.820696 | 5.98E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene24003 | 0.834385 | 3.09E-56 | -1.69E-46 |
| MS.gene051265 | MS.gene24003 | 0.802676 | 5.01E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene24003 | 0.829551 | 4.83E-55 | -1.69E-46 |
| MS.gene052012 | MS.gene24003 | 0.805611 | 1.23E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene24003 | 0.82737 | 1.62E-54 | -1.69E-46 |
| MS.gene052190 | MS.gene24003 | 0.811517 | 6.73E-51 | -1.69E-46 |
| MS.gene052323 | MS.gene24003 | 0.82814 | 1.06E-54 | -1.69E-46 |
| MS.gene052519 | MS.gene24003 | 0.800462 | 1.43E-48 | -1.69E-46 |
| MS.gene052611 | MS.gene24003 | 0.806503 | 7.97E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene24003 | 0.807002 | 6.25E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene24003 | 0.810552 | 1.09E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene24003 | 0.810817 | 9.55E-51 | -1.69E-46 |
| MS.gene053054 | MS.gene24003 | -0.830758 | 2.45E-55 | -1.69E-46 |
| MS.gene053221 | MS.gene24003 | 0.806866 | 6.68E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene24003 | 0.824782 | 6.70E-54 | -1.69E-46 |
| MS.gene053883 | MS.gene24003 | 0.830337 | 3.11E-55 | -1.69E-46 |
| MS.gene054775 | MS.gene24003 | 0.803704 | 3.07E-49 | -1.69E-46 |
| MS.gene055357 | MS.gene24003 | 0.812422 | 4.27E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene24003 | 0.82997 | 3.82E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene24003 | 0.823113 | 1.65E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene24003 | 0.810137 | 1.34E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene24003 | 0.845584 | 3.71E-59 | -1.69E-46 |
| MS.gene056366 | MS.gene24003 | 0.835941 | 1.25E-56 | -1.69E-46 |
| MS.gene056498 | MS.gene24003 | 0.824181 | 9.27E-54 | -1.69E-46 |
| MS.gene056506 | MS.gene24003 | 0.814296 | 1.66E-51 | -1.69E-46 |
| MS.gene056553 | MS.gene24003 | 0.805599 | 1.23E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene24003 | 0.808685 | 2.74E-50 | -1.69E-46 |
| MS.gene057414 | MS.gene24003 | 0.802499 | 5.45E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene24003 | 0.811103 | 8.28E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene24003 | 0.801416 | 9.10E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene24003 | 0.811409 | 7.10E-51 | -1.69E-46 |
| MS.gene058636 | MS.gene24003 | 0.826874 | 2.13E-54 | -1.69E-46 |
| MS.gene058829 | MS.gene24003 | 0.810683 | 1.02E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene24003 | 0.824681 | 7.07E-54 | -1.69E-46 |
| MS.gene059789 | MS.gene24003 | 0.81491 | 1.21E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene24003 | 0.80968 | 1.68E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene24003 | 0.83215 | 1.11E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24003 | MS.gene60613 | PPI |
| MS.gene24003 | MS.gene061126 | PPI |
| MS.gene24003 | MS.gene49154 | PPI |
| MS.gene24003 | MS.gene006231 | PPI |
| MS.gene24003 | MS.gene30654 | PPI |
| MS.gene24003 | MS.gene040499 | PPI |
| MS.gene24003 | MS.gene62607 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24003.t1 | AT1G04130 | 63.506 | 348 | 114 | 3 | 1 | 347 | 1 | 336 | 1.34e-160 | 455 |
| MS.gene24003.t1 | AT1G04130 | 60.159 | 251 | 87 | 3 | 98 | 347 | 1 | 239 | 7.26e-104 | 307 |
| MS.gene24003.t1 | AT1G56440 | 34.337 | 166 | 93 | 7 | 35 | 198 | 88 | 239 | 6.79e-13 | 70.5 |
| MS.gene24003.t1 | AT1G56440 | 34.337 | 166 | 93 | 7 | 35 | 198 | 78 | 229 | 7.07e-13 | 70.1 |
Find 74 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTACTTTGATCCATTTC+GGG | 0.194904 | 1.3:+48838163 | None:intergenic |
| CTTCTTCAATTCCTCATTCT+TGG | 0.218109 | 1.3:+48840215 | None:intergenic |
| TCATTTACTTTGATCCATTT+CGG | 0.218966 | 1.3:+48838162 | None:intergenic |
| AACAAAACATTTCATATAAA+AGG | 0.234209 | 1.3:+48839636 | None:intergenic |
| TCTTACCCATCTTCACATAT+TGG | 0.336932 | 1.3:+48841244 | None:intergenic |
| TTGTCAAATGGGTCTTCATT+TGG | 0.352533 | 1.3:-48840241 | MS.gene24003:CDS |
| GCAGATTGAAACTAAGATAC+TGG | 0.354334 | 1.3:-48840184 | MS.gene24003:CDS |
| TTCTTCAATTCCTCATTCTT+GGG | 0.354589 | 1.3:+48840216 | None:intergenic |
| ACTCCTTCAATATCTATTAG+AGG | 0.356893 | 1.3:-48839277 | MS.gene24003:CDS |
| GCCCATGTTAATTTGCTACT+TGG | 0.360457 | 1.3:-48841129 | MS.gene24003:CDS |
| CCTATGTATCGAGAACTTAC+TGG | 0.383520 | 1.3:-48839796 | MS.gene24003:CDS |
| GCTACTAGTGGGGAAGTTAT+TGG | 0.385514 | 1.3:-48839243 | MS.gene24003:CDS |
| TTTGAATTTGCTATAAAAGC+TGG | 0.386477 | 1.3:+48837966 | None:intergenic |
| ATCTCAGGAATGATGAAATT+AGG | 0.386785 | 1.3:+48838108 | None:intergenic |
| TCCTGAGATCCCAGGTGAAA+TGG | 0.390954 | 1.3:-48838094 | MS.gene24003:intron |
| ACCATTTCACCTGGGATCTC+AGG | 0.398144 | 1.3:+48838093 | None:intergenic |
| GAAAATAGAGGCTTGAAGAT+TGG | 0.400992 | 1.3:-48839823 | MS.gene24003:CDS |
| GTTCATCAGGCTCCCCGAAA+TGG | 0.404916 | 1.3:-48838176 | MS.gene24003:intron |
| GCAAATTCAAAGATGGAAAG+TGG | 0.409006 | 1.3:-48837954 | MS.gene24003:CDS |
| TGATAGCAGCAATGGCTTCA+AGG | 0.419657 | 1.3:+48841378 | None:intergenic |
| GTACACACCTTTATATTTGA+AGG | 0.424038 | 1.3:+48841057 | None:intergenic |
| ACAAAAGTAACATCCTTCAT+TGG | 0.426238 | 1.3:-48839753 | MS.gene24003:CDS |
| ATCGAGAACTTACTGGGTTA+AGG | 0.432106 | 1.3:-48839789 | MS.gene24003:CDS |
| ATTCAACGAAAAGGAAGCTT+TGG | 0.437825 | 1.3:+48840287 | None:intergenic |
| CAGAAGATCAGCCGCTTCCA+TGG | 0.439303 | 1.3:-48839545 | MS.gene24003:CDS |
| AGCACAAGACTATTGTCAAA+TGG | 0.442253 | 1.3:-48840253 | MS.gene24003:CDS |
| GTTTCTGCAATAGAAAATAG+AGG | 0.447295 | 1.3:-48839835 | MS.gene24003:CDS |
| GGGTAACCAATATGTGAAGA+TGG | 0.450218 | 1.3:-48841250 | MS.gene24003:CDS |
| GCTTCCTTTCATACACTTGG+AGG | 0.454416 | 1.3:+48837928 | None:intergenic |
| GTTGTCCCCTTCAAATATAA+AGG | 0.456100 | 1.3:-48841064 | MS.gene24003:intron |
| GTTGCTTCCTTTCATACACT+TGG | 0.457940 | 1.3:+48837925 | None:intergenic |
| TCTGCATACAAAAGAAGAAC+AGG | 0.488330 | 1.3:+48839730 | None:intergenic |
| GCACAAGACTATTGTCAAAT+GGG | 0.491678 | 1.3:-48840252 | MS.gene24003:CDS |
| TTCCCTCTAATAGATATTGA+AGG | 0.495729 | 1.3:+48839274 | None:intergenic |
| GATGGCGCTATGGATGGAAA+AGG | 0.498578 | 1.3:-48841435 | MS.gene24003:CDS |
| ATCCAACGAATTCAACGAAA+AGG | 0.499699 | 1.3:+48840278 | None:intergenic |
| ATCTTCAGCTTTAGAACTCA+AGG | 0.507144 | 1.3:-48841351 | MS.gene24003:intron |
| TGCCCTTGTGTAGCAATCAA+TGG | 0.510437 | 1.3:+48841206 | None:intergenic |
| TACACACCTTTATATTTGAA+GGG | 0.513059 | 1.3:+48841058 | None:intergenic |
| AAAGAAGAACAGGCCAATGA+AGG | 0.520736 | 1.3:+48839740 | None:intergenic |
| AGATTCTTTGATAGCAGCAA+TGG | 0.528920 | 1.3:+48841370 | None:intergenic |
| TCATTTGGATCCCAAGAATG+AGG | 0.529648 | 1.3:-48840226 | MS.gene24003:CDS |
| CTATGTATCGAGAACTTACT+GGG | 0.529659 | 1.3:-48839795 | MS.gene24003:CDS |
| GGCAACGATGGCGCTATGGA+TGG | 0.533170 | 1.3:-48841441 | None:intergenic |
| TAGGCTCTTTCAGAACATCA+TGG | 0.536783 | 1.3:+48838127 | None:intergenic |
| GAAATCCTCAATGAAGTCAC+TGG | 0.541468 | 1.3:+48839699 | None:intergenic |
| TAGTGGAAAACCATTTCACC+TGG | 0.543377 | 1.3:+48838084 | None:intergenic |
| GGCTCCTCCAAGTGTATGAA+AGG | 0.544448 | 1.3:-48837932 | MS.gene24003:CDS |
| AGAAGATCAGCCGCTTCCAT+GGG | 0.544779 | 1.3:-48839544 | MS.gene24003:CDS |
| TAACGCTATTGCAGAGGCAA+AGG | 0.546218 | 1.3:-48840133 | MS.gene24003:intron |
| CCAGTAAGTTCTCGATACAT+AGG | 0.546495 | 1.3:+48839796 | None:intergenic |
| TTCCAAGTAGCAAATTAACA+TGG | 0.546678 | 1.3:+48841127 | None:intergenic |
| TTCATCATTCCTGAGATCCC+AGG | 0.547369 | 1.3:-48838102 | MS.gene24003:CDS |
| CTCCTTCAATATCTATTAGA+GGG | 0.550231 | 1.3:-48839276 | MS.gene24003:CDS |
| AAAGGGCAACGATGGCGCTA+TGG | 0.556727 | 1.3:-48841445 | None:intergenic |
| GGTAACCAATATGTGAAGAT+GGG | 0.559754 | 1.3:-48841249 | MS.gene24003:CDS |
| TATAAAAGGATATCATATCA+AGG | 0.560050 | 1.3:+48839650 | None:intergenic |
| AATGGATCAAAGTAAATGAA+AGG | 0.566088 | 1.3:-48838158 | MS.gene24003:CDS |
| CAAATTCAAAGATGGAAAGT+GGG | 0.573070 | 1.3:-48837953 | MS.gene24003:CDS |
| GAACTGCAGCAGCTACTAGT+GGG | 0.574587 | 1.3:-48839254 | MS.gene24003:CDS |
| ATGGCGCTATGGATGGAAAA+GGG | 0.580044 | 1.3:-48841434 | MS.gene24003:CDS |
| ACACACCTTTATATTTGAAG+GGG | 0.595045 | 1.3:+48841059 | None:intergenic |
| GGAACTGCAGCAGCTACTAG+TGG | 0.596282 | 1.3:-48839255 | MS.gene24003:CDS |
| TCCAAGTAGCAAATTAACAT+GGG | 0.601319 | 1.3:+48841128 | None:intergenic |
| ATTTACTTTGATCCATTTCG+GGG | 0.610669 | 1.3:+48838164 | None:intergenic |
| TATGTCCAGTGACTTCATTG+AGG | 0.613206 | 1.3:-48839704 | MS.gene24003:CDS |
| TGAAGAGAAAGACGCAGTTG+AGG | 0.626108 | 1.3:-48839217 | MS.gene24003:CDS |
| ATGCCATTGATTGCTACACA+AGG | 0.631471 | 1.3:-48841209 | MS.gene24003:CDS |
| AGTTTCTAACGCTATTGCAG+AGG | 0.653391 | 1.3:-48840139 | MS.gene24003:CDS |
| TGCCATTGATTGCTACACAA+GGG | 0.679278 | 1.3:-48841208 | MS.gene24003:CDS |
| AACTGCAGCAGCTACTAGTG+GGG | 0.680793 | 1.3:-48839253 | MS.gene24003:CDS |
| AGTGGAAAACCATTTCACCT+GGG | 0.681775 | 1.3:+48838085 | None:intergenic |
| AAGGTGAACCGAAAACATGT+CGG | 0.696850 | 1.3:+48839669 | None:intergenic |
| ATTTATTGAGTTATACTACG+AGG | 0.741669 | 1.3:-48839496 | MS.gene24003:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGTTTTAATATTACATTT+TGG | - | chr1.3:48840415-48840434 | MS.gene24003:intron | 10.0% |
| !! | AACAAAACATTTCATATAAA+AGG | + | chr1.3:48839697-48839716 | None:intergenic | 15.0% |
| !!! | ATTCAATGTTTTTAAATTCT+TGG | - | chr1.3:48840386-48840405 | MS.gene24003:intron | 15.0% |
| !!! | TTCTTTTTTGCTTTATAAAA+AGG | + | chr1.3:48840996-48841015 | None:intergenic | 15.0% |
| !! | AAAGAAATCCATTCAAAAAT+TGG | + | chr1.3:48840845-48840864 | None:intergenic | 20.0% |
| !! | AGATAAATTAAAGAGAAGAA+TGG | - | chr1.3:48840468-48840487 | MS.gene24003:intron | 20.0% |
| !! | ATCCAAAACCATAATAAAAA+TGG | + | chr1.3:48840329-48840348 | None:intergenic | 20.0% |
| !! | CACAATTTATGTTTAAAGAA+GGG | + | chr1.3:48839466-48839485 | None:intergenic | 20.0% |
| !! | TATAAAAGGATATCATATCA+AGG | + | chr1.3:48839683-48839702 | None:intergenic | 20.0% |
| !! | TGATGTTTCAATAGTAATAA+TGG | - | chr1.3:48838987-48839006 | MS.gene24003:intron | 20.0% |
| !! | TTAAATACATTCTTTATCGT+TGG | + | chr1.3:48841098-48841117 | None:intergenic | 20.0% |
| !!! | AATAATCTTTTTCAGGAAAA+GGG | - | chr1.3:48838060-48838079 | MS.gene24003:intron | 20.0% |
| !!! | AATTAAGTTGTTTATCGAAA+CGG | - | chr1.3:48838927-48838946 | MS.gene24003:intron | 20.0% |
| !!! | ATACTAGTTTTGTGTATATA+TGG | - | chr1.3:48839729-48839748 | MS.gene24003:CDS | 20.0% |
| !!! | TTTGAAAACCAATTTTTGAA+TGG | - | chr1.3:48840834-48840853 | MS.gene24003:intron | 20.0% |
| !!! | TTTTATAGCAAATTCAAAGA+TGG | - | chr1.3:48841369-48841388 | MS.gene24003:CDS | 20.0% |
| ! | AAAAAGAAAAAAAACTCCCT+TGG | - | chr1.3:48841008-48841027 | MS.gene24003:intron | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | + | chr1.3:48838310-48838329 | None:intergenic | 25.0% |
| ! | AATGGATCAAAGTAAATGAA+AGG | - | chr1.3:48841172-48841191 | MS.gene24003:CDS | 25.0% |
| ! | AATGGTAACTGTGATTTATT+AGG | - | chr1.3:48839005-48839024 | MS.gene24003:intron | 25.0% |
| ! | ACAGTATGAACCATTATATT+AGG | + | chr1.3:48840233-48840252 | None:intergenic | 25.0% |
| ! | ACTGTGTTAAAGTAATAACT+TGG | - | chr1.3:48840248-48840267 | MS.gene24003:CDS | 25.0% |
| ! | ACTTCATTTCCCTAATATAA+TGG | - | chr1.3:48840220-48840239 | MS.gene24003:CDS | 25.0% |
| ! | AGTACAAAATGTTGTCAAAT+AGG | + | chr1.3:48839309-48839328 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | + | chr1.3:48838309-48838328 | None:intergenic | 25.0% |
| ! | ATGTTATCCTAAACAATACA+TGG | + | chr1.3:48838656-48838675 | None:intergenic | 25.0% |
| ! | ATTTATTGAGTTATACTACG+AGG | - | chr1.3:48839834-48839853 | MS.gene24003:CDS | 25.0% |
| ! | CACATATGTTTAACAAAATG+AGG | - | chr1.3:48841063-48841082 | MS.gene24003:intron | 25.0% |
| ! | CAGTATGAACCATTATATTA+GGG | + | chr1.3:48840232-48840251 | None:intergenic | 25.0% |
| ! | CTGTGTTAAAGTAATAACTT+GGG | - | chr1.3:48840249-48840268 | MS.gene24003:CDS | 25.0% |
| ! | GCACAATTTATGTTTAAAGA+AGG | + | chr1.3:48839467-48839486 | None:intergenic | 25.0% |
| ! | GTACAAAATGTTGTCAAATA+GGG | + | chr1.3:48839308-48839327 | None:intergenic | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+GGG | + | chr1.3:48839307-48839326 | None:intergenic | 25.0% |
| ! | TACACACCTTTATATTTGAA+GGG | + | chr1.3:48838275-48838294 | None:intergenic | 25.0% |
| ! | TCATTTACTTTGATCCATTT+CGG | + | chr1.3:48841171-48841190 | None:intergenic | 25.0% |
| ! | TCTTTAAACATAAATTGTGC+AGG | - | chr1.3:48839467-48839486 | MS.gene24003:intron | 25.0% |
| ! | TTGTTAAACATATGTGACAA+GGG | + | chr1.3:48841059-48841078 | None:intergenic | 25.0% |
| ! | TTTGTTAAACATATGTGACA+AGG | + | chr1.3:48841060-48841079 | None:intergenic | 25.0% |
| !! | AAAATACGTTTGATAGCTAA+GGG | + | chr1.3:48839765-48839784 | None:intergenic | 25.0% |
| !! | TAAAGGTGTGTACTTTATTA+TGG | - | chr1.3:48838283-48838302 | MS.gene24003:intron | 25.0% |
| !!! | AGCCATTTTTATTATGGTTT+TGG | - | chr1.3:48840324-48840343 | MS.gene24003:intron | 25.0% |
| !!! | ATAAGTTTTGTAAGACCAAT+TGG | + | chr1.3:48838496-48838515 | None:intergenic | 25.0% |
| !!! | CAATAATCTTTTTCAGGAAA+AGG | - | chr1.3:48838059-48838078 | MS.gene24003:intron | 25.0% |
| !!! | CTTACATAAGCTATTTCTAT+AGG | - | chr1.3:48838343-48838362 | MS.gene24003:intron | 25.0% |
| !!! | TAAGTTTTGTAAGACCAATT+GGG | + | chr1.3:48838495-48838514 | None:intergenic | 25.0% |
| !!! | TATGGTTTTGGATGATAAAT+AGG | - | chr1.3:48840336-48840355 | MS.gene24003:intron | 25.0% |
| !!! | TTTGAATTTGCTATAAAAGC+TGG | + | chr1.3:48841367-48841386 | None:intergenic | 25.0% |
| !!! | TTTGACATGGTGATATTTTT+TGG | - | chr1.3:48839901-48839920 | MS.gene24003:intron | 25.0% |
| !!! | TTTTTTGAAAACTCAGTATG+CGG | + | chr1.3:48838867-48838886 | None:intergenic | 25.0% |
| ACAAAAGTAACATCCTTCAT+TGG | - | chr1.3:48839577-48839596 | MS.gene24003:intron | 30.0% | |
| ACACACCTTTATATTTGAAG+GGG | + | chr1.3:48838274-48838293 | None:intergenic | 30.0% | |
| ACTCCTTCAATATCTATTAG+AGG | - | chr1.3:48840053-48840072 | MS.gene24003:intron | 30.0% | |
| AGTCTTAGAGTTATGACTAT+GGG | + | chr1.3:48840558-48840577 | None:intergenic | 30.0% | |
| AGTTAGTGAAATCTATGACT+AGG | - | chr1.3:48840523-48840542 | MS.gene24003:intron | 30.0% | |
| ATCTCAGGAATGATGAAATT+AGG | + | chr1.3:48841225-48841244 | None:intergenic | 30.0% | |
| ATTTACTTTGATCCATTTCG+GGG | + | chr1.3:48841169-48841188 | None:intergenic | 30.0% | |
| CAAATTCAAAGATGGAAAGT+GGG | - | chr1.3:48841377-48841396 | MS.gene24003:CDS | 30.0% | |
| CATTTACTTTGATCCATTTC+GGG | + | chr1.3:48841170-48841189 | None:intergenic | 30.0% | |
| CCTGATAAAACAAGGAATAA+GGG | + | chr1.3:48840002-48840021 | None:intergenic | 30.0% | |
| CTACAAGTACACAATTTCAA+TGG | + | chr1.3:48839874-48839893 | None:intergenic | 30.0% | |
| CTCCTTCAATATCTATTAGA+GGG | - | chr1.3:48840054-48840073 | MS.gene24003:intron | 30.0% | |
| CTGATAAAACAAGGAATAAG+GGG | + | chr1.3:48840001-48840020 | None:intergenic | 30.0% | |
| GAAACTCTAAACAGAATCAA+TGG | + | chr1.3:48841293-48841312 | None:intergenic | 30.0% | |
| GAAATGTCCATGTATTGTTT+AGG | - | chr1.3:48838646-48838665 | MS.gene24003:intron | 30.0% | |
| GTACACACCTTTATATTTGA+AGG | + | chr1.3:48838276-48838295 | None:intergenic | 30.0% | |
| GTTAGTGAAATCTATGACTA+GGG | - | chr1.3:48840524-48840543 | MS.gene24003:intron | 30.0% | |
| GTTTCTGCAATAGAAAATAG+AGG | - | chr1.3:48839495-48839514 | MS.gene24003:intron | 30.0% | |
| TAACAGAATGTATGTTCATC+AGG | - | chr1.3:48841141-48841160 | MS.gene24003:CDS | 30.0% | |
| TCCAAGTAGCAAATTAACAT+GGG | + | chr1.3:48838205-48838224 | None:intergenic | 30.0% | |
| TGTTAAAGTAATAACTTGGG+CGG | - | chr1.3:48840252-48840271 | MS.gene24003:CDS | 30.0% | |
| TTAAACTTATGATGTGCCAA+GGG | + | chr1.3:48841027-48841046 | None:intergenic | 30.0% | |
| TTCCAAGTAGCAAATTAACA+TGG | + | chr1.3:48838206-48838225 | None:intergenic | 30.0% | |
| TTCCCTCTAATAGATATTGA+AGG | + | chr1.3:48840059-48840078 | None:intergenic | 30.0% | |
| TTCTTCAATTCCTCATTCTT+GGG | + | chr1.3:48839117-48839136 | None:intergenic | 30.0% | |
| ! | AAACCAGTGTTGTTAAATAG+AGG | + | chr1.3:48839401-48839420 | None:intergenic | 30.0% |
| ! | AACAAAAGTATGTCTTCTAG+TGG | + | chr1.3:48841266-48841285 | None:intergenic | 30.0% |
| ! | CACACTCAATAATCTTTTTC+AGG | - | chr1.3:48838053-48838072 | MS.gene24003:intron | 30.0% |
| ! | CTTTGAACTGTTTTCTTTAG+TGG | - | chr1.3:48839228-48839247 | MS.gene24003:CDS | 30.0% |
| ! | GAAAATACGTTTGATAGCTA+AGG | + | chr1.3:48839766-48839785 | None:intergenic | 30.0% |
| ! | GCATATTTTGTGTCAAATGT+TGG | - | chr1.3:48839941-48839960 | MS.gene24003:intron | 30.0% |
| ! | TAATTGTTTTCAACATCCCA+TGG | + | chr1.3:48839805-48839824 | None:intergenic | 30.0% |
| ! | TATATGAAAACATGTCGACT+AGG | - | chr1.3:48838695-48838714 | MS.gene24003:intron | 30.0% |
| ! | TTCTCATGTAACTTGTAATG+TGG | - | chr1.3:48839420-48839439 | MS.gene24003:intron | 30.0% |
| ! | TTGTAGTTACTAGTTTGACA+TGG | - | chr1.3:48839888-48839907 | MS.gene24003:intron | 30.0% |
| ! | TTTGGCAAAATCGTTCATTT+TGG | - | chr1.3:48839919-48839938 | MS.gene24003:intron | 30.0% |
| !! | GCTACTTGGAAATTTTAGAA+GGG | - | chr1.3:48838215-48838234 | MS.gene24003:intron | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | - | chr1.3:48838404-48838423 | MS.gene24003:intron | 30.0% |
| !! | TGCTACTTGGAAATTTTAGA+AGG | - | chr1.3:48838214-48838233 | MS.gene24003:intron | 30.0% |
| !!! | ATAGCGAGCCATTTTTATTA+TGG | - | chr1.3:48840318-48840337 | MS.gene24003:intron | 30.0% |
| !!! | ATGTTACTTTTGTCTAACAC+AGG | + | chr1.3:48839570-48839589 | None:intergenic | 30.0% |
| !!! | TAGTCCATACTGGTTTTAAA+TGG | - | chr1.3:48838788-48838807 | MS.gene24003:intron | 30.0% |
| AAGGAGAAATCTAGTGAAAG+AGG | + | chr1.3:48840977-48840996 | None:intergenic | 35.0% | |
| AATCTTACCTTCCATTAGTG+GGG | + | chr1.3:48838816-48838835 | None:intergenic | 35.0% | |
| ACAAGAAGCAAACAAACACA+TGG | + | chr1.3:48838955-48838974 | None:intergenic | 35.0% | |
| ACAATGAGGAAAACACCTAT+TGG | - | chr1.3:48840286-48840305 | MS.gene24003:CDS | 35.0% | |
| ACTATTGAAACATCAGACCA+AGG | + | chr1.3:48838982-48839001 | None:intergenic | 35.0% | |
| ACTGGAGAATGAAAAACATG+AGG | - | chr1.3:48839164-48839183 | MS.gene24003:intron | 35.0% | |
| AGCACAAGACTATTGTCAAA+TGG | - | chr1.3:48839077-48839096 | MS.gene24003:intron | 35.0% | |
| ATCCAACGAATTCAACGAAA+AGG | + | chr1.3:48839055-48839074 | None:intergenic | 35.0% | |
| ATTCAACGAAAAGGAAGCTT+TGG | + | chr1.3:48839046-48839065 | None:intergenic | 35.0% | |
| CAATCTTACCTTCCATTAGT+GGG | + | chr1.3:48838817-48838836 | None:intergenic | 35.0% | |
| CAGTCTTAGAGTTATGACTA+TGG | + | chr1.3:48840559-48840578 | None:intergenic | 35.0% | |
| CCACTAGATAAAGCTCAAAT+AGG | - | chr1.3:48838517-48838536 | MS.gene24003:intron | 35.0% | |
| CGCTATAAATCATCACCAAT+AGG | + | chr1.3:48840304-48840323 | None:intergenic | 35.0% | |
| CTATGTATCGAGAACTTACT+GGG | - | chr1.3:48839535-48839554 | MS.gene24003:CDS | 35.0% | |
| CTTCTTCAATTCCTCATTCT+TGG | + | chr1.3:48839118-48839137 | None:intergenic | 35.0% | |
| CTTTCCCAAAATATGACTCT+TGG | - | chr1.3:48840744-48840763 | MS.gene24003:intron | 35.0% | |
| GAAAATAGAGGCTTGAAGAT+TGG | - | chr1.3:48839507-48839526 | MS.gene24003:CDS | 35.0% | |
| GCAAATTCAAAGATGGAAAG+TGG | - | chr1.3:48841376-48841395 | MS.gene24003:CDS | 35.0% | |
| GCACAAGACTATTGTCAAAT+GGG | - | chr1.3:48839078-48839097 | MS.gene24003:intron | 35.0% | |
| GCAGATTGAAACTAAGATAC+TGG | - | chr1.3:48839146-48839165 | MS.gene24003:intron | 35.0% | |
| GCCTGATAAAACAAGGAATA+AGG | + | chr1.3:48840003-48840022 | None:intergenic | 35.0% | |
| GGTAACCAATATGTGAAGAT+GGG | - | chr1.3:48838081-48838100 | MS.gene24003:intron | 35.0% | |
| GTGTTTGTATGGAAGATCAT+TGG | + | chr1.3:48840621-48840640 | None:intergenic | 35.0% | |
| GTTAAACTTATGATGTGCCA+AGG | + | chr1.3:48841028-48841047 | None:intergenic | 35.0% | |
| GTTGTCCCCTTCAAATATAA+AGG | - | chr1.3:48838266-48838285 | MS.gene24003:intron | 35.0% | |
| GTTTGCTTCTTGTAATTCCT+TGG | - | chr1.3:48838962-48838981 | MS.gene24003:intron | 35.0% | |
| TAAGTTCTTGTACCAAACAG+TGG | + | chr1.3:48840810-48840829 | None:intergenic | 35.0% | |
| TACTTTATTATGGCCCTGTT+TGG | - | chr1.3:48838293-48838312 | MS.gene24003:intron | 35.0% | |
| TCTGCATACAAAAGAAGAAC+AGG | + | chr1.3:48839603-48839622 | None:intergenic | 35.0% | |
| TCTTACCCATCTTCACATAT+TGG | + | chr1.3:48838089-48838108 | None:intergenic | 35.0% | |
| TGCTTATAAGTTCTCCCAAT+TGG | - | chr1.3:48838478-48838497 | MS.gene24003:intron | 35.0% | |
| TTGTCAAATGGGTCTTCATT+TGG | - | chr1.3:48839089-48839108 | MS.gene24003:intron | 35.0% | |
| ! | ACCTCCAAGAGTCATATTTT+GGG | + | chr1.3:48840751-48840770 | None:intergenic | 35.0% |
| ! | AGATTCTTTGATAGCAGCAA+TGG | + | chr1.3:48837963-48837982 | None:intergenic | 35.0% |
| ! | AGTTTTTGCTTAGATAGACG+AGG | + | chr1.3:48840036-48840055 | None:intergenic | 35.0% |
| ! | CCTATTTGAGCTTTATCTAG+TGG | + | chr1.3:48838520-48838539 | None:intergenic | 35.0% |
| ! | TTCCTTTTCGTTGAATTCGT+TGG | - | chr1.3:48839050-48839069 | MS.gene24003:intron | 35.0% |
| !! | ATCTTCAGCTTTAGAACTCA+AGG | - | chr1.3:48837979-48837998 | MS.gene24003:CDS | 35.0% |
| !! | CAAGAGTCATATTTTGGGAA+AGG | + | chr1.3:48840746-48840765 | None:intergenic | 35.0% |
| !! | GTTGAGAGCAGTTTTGATAA+TGG | - | chr1.3:48840588-48840607 | MS.gene24003:intron | 35.0% |
| !!! | CCCTTATTCCTTGTTTTATC+AGG | - | chr1.3:48839999-48840018 | MS.gene24003:intron | 35.0% |
| !!! | GGGGATGGTTTTAAAATGTT+AGG | + | chr1.3:48840932-48840951 | None:intergenic | 35.0% |
| !!! | TATTCCTTGTTTTATCAGGC+TGG | - | chr1.3:48840003-48840022 | MS.gene24003:intron | 35.0% |
| AAAACAAGGAATAAGGGGTG+AGG | + | chr1.3:48839996-48840015 | None:intergenic | 40.0% | |
| AAAGAAGAACAGGCCAATGA+AGG | + | chr1.3:48839593-48839612 | None:intergenic | 40.0% | |
| AAGGTGAACCGAAAACATGT+CGG | + | chr1.3:48839664-48839683 | None:intergenic | 40.0% | |
| AAGTAATAACTTGGGCGGTA+AGG | - | chr1.3:48840257-48840276 | MS.gene24003:CDS | 40.0% | |
| AGAACCAGCCTGATAAAACA+AGG | + | chr1.3:48840010-48840029 | None:intergenic | 40.0% | |
| AGTGGAAAACCATTTCACCT+GGG | + | chr1.3:48841248-48841267 | None:intergenic | 40.0% | |
| AGTTTCTAACGCTATTGCAG+AGG | - | chr1.3:48839191-48839210 | MS.gene24003:intron | 40.0% | |
| ATCAAAACTGCTCTCAACCT+AGG | + | chr1.3:48840586-48840605 | None:intergenic | 40.0% | |
| ATCCCTTCACAGATTGTCTA+TGG | - | chr1.3:48840674-48840693 | MS.gene24003:intron | 40.0% | |
| ATCGAGAACTTACTGGGTTA+AGG | - | chr1.3:48839541-48839560 | MS.gene24003:CDS | 40.0% | |
| ATCTTACCTTCCATTAGTGG+GGG | + | chr1.3:48838815-48838834 | None:intergenic | 40.0% | |
| ATTTGCCTAGCTTAGCATGA+TGG | + | chr1.3:48840953-48840972 | None:intergenic | 40.0% | |
| CACCATAGACAATCTGTGAA+GGG | + | chr1.3:48840679-48840698 | None:intergenic | 40.0% | |
| CCAATCTTACCTTCCATTAG+TGG | + | chr1.3:48838818-48838837 | None:intergenic | 40.0% | |
| CCACTAATGGAAGGTAAGAT+TGG | - | chr1.3:48838815-48838834 | MS.gene24003:intron | 40.0% | |
| CCAGAAATCAATTGCAACGA+AGG | + | chr1.3:48840184-48840203 | None:intergenic | 40.0% | |
| CCAGTAAGTTCTCGATACAT+AGG | + | chr1.3:48839537-48839556 | None:intergenic | 40.0% | |
| CCTATGTATCGAGAACTTAC+TGG | - | chr1.3:48839534-48839553 | MS.gene24003:CDS | 40.0% | |
| CGGTAAGGATATAGACAATG+AGG | - | chr1.3:48840272-48840291 | MS.gene24003:CDS | 40.0% | |
| CTCACAAGTGTTTATGACAG+TGG | + | chr1.3:48838605-48838624 | None:intergenic | 40.0% | |
| GAAATCCTCAATGAAGTCAC+TGG | + | chr1.3:48839634-48839653 | None:intergenic | 40.0% | |
| GGGTAACCAATATGTGAAGA+TGG | - | chr1.3:48838080-48838099 | MS.gene24003:intron | 40.0% | |
| GTGCCTCTATTTAACAACAC+TGG | - | chr1.3:48839395-48839414 | MS.gene24003:intron | 40.0% | |
| GTTGCTTCCTTTCATACACT+TGG | + | chr1.3:48841408-48841427 | None:intergenic | 40.0% | |
| TAGGCTCTTTCAGAACATCA+TGG | + | chr1.3:48841206-48841225 | None:intergenic | 40.0% | |
| TAGTGGAAAACCATTTCACC+TGG | + | chr1.3:48841249-48841268 | None:intergenic | 40.0% | |
| TATGTCCAGTGACTTCATTG+AGG | - | chr1.3:48839626-48839645 | MS.gene24003:intron | 40.0% | |
| TCAAAACTGCTCTCAACCTA+GGG | + | chr1.3:48840585-48840604 | None:intergenic | 40.0% | |
| TCATTTGGATCCCAAGAATG+AGG | - | chr1.3:48839104-48839123 | MS.gene24003:intron | 40.0% | |
| TCCCAAAATATGACTCTTGG+AGG | - | chr1.3:48840747-48840766 | MS.gene24003:intron | 40.0% | |
| TCTATATCGCTGAGCAATAG+CGG | - | chr1.3:48839339-48839358 | MS.gene24003:intron | 40.0% | |
| TTCTTGTACCAAACAGTGGT+TGG | + | chr1.3:48840806-48840825 | None:intergenic | 40.0% | |
| TTGTCAAATAGGGGCTATAG+AGG | + | chr1.3:48839298-48839317 | None:intergenic | 40.0% | |
| TTTAAATGGTCCCCCACTAA+TGG | - | chr1.3:48838802-48838821 | MS.gene24003:intron | 40.0% | |
| TTTGCCTAGCTTAGCATGAT+GGG | + | chr1.3:48840952-48840971 | None:intergenic | 40.0% | |
| ! | AAGGTCTGCTTTCTCGTTTT+CGG | + | chr1.3:48837936-48837955 | None:intergenic | 40.0% |
| ! | ATGCCATTGATTGCTACACA+AGG | - | chr1.3:48838121-48838140 | MS.gene24003:CDS | 40.0% |
| ! | ATTGGTCTCCTCGGATTATT+CGG | - | chr1.3:48838833-48838852 | MS.gene24003:intron | 40.0% |
| ! | CCTTCGTTGCAATTGATTTC+TGG | - | chr1.3:48840181-48840200 | MS.gene24003:CDS | 40.0% |
| ! | GACCTCCAAGAGTCATATTT+TGG | + | chr1.3:48840752-48840771 | None:intergenic | 40.0% |
| ! | GCTTTCTCGTTTTCGGTTAA+AGG | + | chr1.3:48837929-48837948 | None:intergenic | 40.0% |
| ! | GGGACCATTTAAAACCAGTA+TGG | + | chr1.3:48838795-48838814 | None:intergenic | 40.0% |
| ! | GTAACTTGTAATGTGGAGAC+TGG | - | chr1.3:48839427-48839446 | MS.gene24003:intron | 40.0% |
| ! | TAGTACACGTAGAGCTTGTT+TGG | + | chr1.3:48838548-48838567 | None:intergenic | 40.0% |
| ! | TGATAGCTAAGGGTGTAACA+CGG | + | chr1.3:48839755-48839774 | None:intergenic | 40.0% |
| ! | TGCCATTGATTGCTACACAA+GGG | - | chr1.3:48838122-48838141 | MS.gene24003:CDS | 40.0% |
| ! | TTTTCAACATCCCATGGAAG+CGG | + | chr1.3:48839799-48839818 | None:intergenic | 40.0% |
| !! | GCCCATGTTAATTTGCTACT+TGG | - | chr1.3:48838201-48838220 | MS.gene24003:intron | 40.0% |
| !! | TTGTTTTATCAGGCTGGTTC+TGG | - | chr1.3:48840009-48840028 | MS.gene24003:intron | 40.0% |
| !!! | GAGAGCAGTTTTGATAATGG+CGG | - | chr1.3:48840591-48840610 | MS.gene24003:intron | 40.0% |
| ATGGCGCTATGGATGGAAAA+GGG | - | chr1.3:48837896-48837915 | MS.gene24003:CDS | 45.0% | |
| CAAAACTGCTCTCAACCTAG+GGG | + | chr1.3:48840584-48840603 | None:intergenic | 45.0% | |
| CCACCATAGACAATCTGTGA+AGG | + | chr1.3:48840680-48840699 | None:intergenic | 45.0% | |
| CCTCGGATTATTCGGTCTTT+GGG | - | chr1.3:48838841-48838860 | MS.gene24003:intron | 45.0% | |
| CCTTCACAGATTGTCTATGG+TGG | - | chr1.3:48840677-48840696 | MS.gene24003:intron | 45.0% | |
| CTTGGACTGCGCTTCTATAA+AGG | - | chr1.3:48838726-48838745 | MS.gene24003:intron | 45.0% | |
| GCTACTAGTGGGGAAGTTAT+TGG | - | chr1.3:48840087-48840106 | MS.gene24003:intron | 45.0% | |
| GCTTCCTTTCATACACTTGG+AGG | + | chr1.3:48841405-48841424 | None:intergenic | 45.0% | |
| TAACGCTATTGCAGAGGCAA+AGG | - | chr1.3:48839197-48839216 | MS.gene24003:intron | 45.0% | |
| TAGCCCACAGAAATTGGTAC+CGG | + | chr1.3:48838770-48838789 | None:intergenic | 45.0% | |
| TCCATACAAACACGCCATTG+CGG | - | chr1.3:48840628-48840647 | MS.gene24003:intron | 45.0% | |
| TCCTCGGATTATTCGGTCTT+TGG | - | chr1.3:48838840-48838859 | MS.gene24003:intron | 45.0% | |
| TGAAGAGAAAGACGCAGTTG+AGG | - | chr1.3:48840113-48840132 | MS.gene24003:intron | 45.0% | |
| TGATAGCAGCAATGGCTTCA+AGG | + | chr1.3:48837955-48837974 | None:intergenic | 45.0% | |
| TGCCCTTGTGTAGCAATCAA+TGG | + | chr1.3:48838127-48838146 | None:intergenic | 45.0% | |
| TGCGCTTCTATAAAGGTCTC+AGG | - | chr1.3:48838733-48838752 | MS.gene24003:intron | 45.0% | |
| TTCATCATTCCTGAGATCCC+AGG | - | chr1.3:48841228-48841247 | MS.gene24003:CDS | 45.0% | |
| TTGCCTAGCTTAGCATGATG+GGG | + | chr1.3:48840951-48840970 | None:intergenic | 45.0% | |
| ! | CACGTAGAGCTTGTTTGGAT+TGG | + | chr1.3:48838543-48838562 | None:intergenic | 45.0% |
| ! | CTTTATAGAAGCGCAGTCCA+AGG | + | chr1.3:48838728-48838747 | None:intergenic | 45.0% |
| !! | AACTCTAAGACTGATCCCCT+AGG | - | chr1.3:48840566-48840585 | MS.gene24003:intron | 45.0% |
| !! | ATGGACTAGCCCACAGAAAT+TGG | + | chr1.3:48838776-48838795 | None:intergenic | 45.0% |
| !! | GAAGGTAAGATTGGTCTCCT+CGG | - | chr1.3:48838824-48838843 | MS.gene24003:intron | 45.0% |
| !!! | GCAGTTTTGATAATGGCGGA+AGG | - | chr1.3:48840595-48840614 | MS.gene24003:intron | 45.0% |
| !! | TAATTTATCTTAAATTTAAA+AGG | + | chr1.3:48840458-48840477 | None:intergenic | 5.0% |
| AACTGCAGCAGCTACTAGTG+GGG | - | chr1.3:48840077-48840096 | MS.gene24003:intron | 50.0% | |
| AAGATCTGTCACTGCGAAGG+TGG | - | chr1.3:48840707-48840726 | MS.gene24003:intron | 50.0% | |
| AATGGTCCCCCACTAATGGA+AGG | - | chr1.3:48838806-48838825 | MS.gene24003:intron | 50.0% | |
| ACAAGGAATAAGGGGTGAGG+TGG | + | chr1.3:48839993-48840012 | None:intergenic | 50.0% | |
| ACAGTGGAATAGTGGTTGGC+CGG | + | chr1.3:48840781-48840800 | None:intergenic | 50.0% | |
| ACCATTTCACCTGGGATCTC+AGG | + | chr1.3:48841240-48841259 | None:intergenic | 50.0% | |
| ACTCTTGGAGGTCATGTGAC+CGG | - | chr1.3:48840759-48840778 | MS.gene24003:intron | 50.0% | |
| AGAAGATCAGCCGCTTCCAT+GGG | - | chr1.3:48839786-48839805 | MS.gene24003:CDS | 50.0% | |
| AGCCCACAGAAATTGGTACC+GGG | + | chr1.3:48838769-48838788 | None:intergenic | 50.0% | |
| CAAGGAATAAGGGGTGAGGT+GGG | + | chr1.3:48839992-48840011 | None:intergenic | 50.0% | |
| CACTGTGACCAACCACTGTT+TGG | - | chr1.3:48840795-48840814 | MS.gene24003:intron | 50.0% | |
| CAGAAGATCTGTCACTGCGA+AGG | - | chr1.3:48840704-48840723 | MS.gene24003:intron | 50.0% | |
| CATCCCCATCATGCTAAGCT+AGG | - | chr1.3:48840945-48840964 | MS.gene24003:intron | 50.0% | |
| CCCAAAGACCGAATAATCCG+AGG | + | chr1.3:48838844-48838863 | None:intergenic | 50.0% | |
| CTCCCGGTACCAATTTCTGT+GGG | - | chr1.3:48838764-48838783 | MS.gene24003:intron | 50.0% | |
| GAACTGCAGCAGCTACTAGT+GGG | - | chr1.3:48840076-48840095 | MS.gene24003:intron | 50.0% | |
| GGCTCCTCCAAGTGTATGAA+AGG | - | chr1.3:48841398-48841417 | MS.gene24003:CDS | 50.0% | |
| GGTCACAGTGGAATAGTGGT+TGG | + | chr1.3:48840785-48840804 | None:intergenic | 50.0% | |
| GGTGAGGTGGGAAATTGGTT+TGG | + | chr1.3:48839980-48839999 | None:intergenic | 50.0% | |
| GTCTCAGGTTTGAATCCTCC+CGG | - | chr1.3:48838748-48838767 | MS.gene24003:intron | 50.0% | |
| TAAGGGGTGAGGTGGGAAAT+TGG | + | chr1.3:48839985-48840004 | None:intergenic | 50.0% | |
| TCCTGAGATCCCAGGTGAAA+TGG | - | chr1.3:48841236-48841255 | MS.gene24003:CDS | 50.0% | |
| ! | CAAACAGTGGTTGGTCACAG+TGG | + | chr1.3:48840797-48840816 | None:intergenic | 50.0% |
| ! | CTAGCTTAGCATGATGGGGA+TGG | + | chr1.3:48840947-48840966 | None:intergenic | 50.0% |
| ! | CTGCGAGACCGACATGTTTT+CGG | - | chr1.3:48839653-48839672 | MS.gene24003:CDS | 50.0% |
| ! | GGTTGGTCACAGTGGAATAG+TGG | + | chr1.3:48840789-48840808 | None:intergenic | 50.0% |
| !! | GAGGTGGGAAATTGGTTTGG+AGG | + | chr1.3:48839977-48839996 | None:intergenic | 50.0% |
| !! | TTCTGTGGGCTAGTCCATAC+TGG | - | chr1.3:48838778-48838797 | MS.gene24003:intron | 50.0% |
| AAACACGCCATTGCGGCCTA+TGG | - | chr1.3:48840635-48840654 | MS.gene24003:intron | 55.0% | |
| CAGAAGATCAGCCGCTTCCA+TGG | - | chr1.3:48839785-48839804 | MS.gene24003:CDS | 55.0% | |
| CCTCCCGGTACCAATTTCTG+TGG | - | chr1.3:48838763-48838782 | MS.gene24003:intron | 55.0% | |
| GCCGCAATGGCGTGTTTGTA+TGG | + | chr1.3:48840632-48840651 | None:intergenic | 55.0% | |
| GGAACTGCAGCAGCTACTAG+TGG | - | chr1.3:48840075-48840094 | MS.gene24003:intron | 55.0% | |
| GTCGACTAGGCTTGAGACCT+TGG | - | chr1.3:48838708-48838727 | MS.gene24003:intron | 55.0% | |
| GTTCATCAGGCTCCCCGAAA+TGG | - | chr1.3:48841154-48841173 | MS.gene24003:CDS | 55.0% | |
| ! | CCACAGAAATTGGTACCGGG+AGG | + | chr1.3:48838766-48838785 | None:intergenic | 55.0% |
| ! | GAGGCGCTACTGAGGCATAG+TGG | + | chr1.3:48839279-48839298 | None:intergenic | 60.0% |
| !! | GGGCTATAGAGGCGCTACTG+AGG | + | chr1.3:48839287-48839306 | None:intergenic | 60.0% |
| CTGTGAAGGGATGCCCGCCA+TGG | + | chr1.3:48840666-48840685 | None:intergenic | 65.0% | |
| TGAAGGGATGCCCGCCATGG+CGG | + | chr1.3:48840663-48840682 | None:intergenic | 65.0% | |
| GGCGGCACCATAGGCCGCAA+TGG | + | chr1.3:48840645-48840664 | None:intergenic | 70.0% | |
| !! | GCCTATGGTGCCGCCATGGC+GGG | - | chr1.3:48840650-48840669 | MS.gene24003:intron | 70.0% |
| !! | GGCCTATGGTGCCGCCATGG+CGG | - | chr1.3:48840649-48840668 | MS.gene24003:intron | 70.0% |
| !! | TGCGGCCTATGGTGCCGCCA+TGG | - | chr1.3:48840646-48840665 | MS.gene24003:intron | 70.0% |
| GCCCGCCATGGCGGCACCAT+AGG | + | chr1.3:48840654-48840673 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 48837896 | 48841456 | 48837896 | ID=MS.gene24003 |
| chr1.3 | mRNA | 48837896 | 48841456 | 48837896 | ID=MS.gene24003.t1;Parent=MS.gene24003 |
| chr1.3 | exon | 48841352 | 48841456 | 48841352 | ID=MS.gene24003.t1.exon1;Parent=MS.gene24003.t1 |
| chr1.3 | CDS | 48841352 | 48841456 | 48841352 | ID=cds.MS.gene24003.t1;Parent=MS.gene24003.t1 |
| chr1.3 | exon | 48841065 | 48841277 | 48841065 | ID=MS.gene24003.t1.exon2;Parent=MS.gene24003.t1 |
| chr1.3 | CDS | 48841065 | 48841277 | 48841065 | ID=cds.MS.gene24003.t1;Parent=MS.gene24003.t1 |
| chr1.3 | exon | 48840134 | 48840325 | 48840134 | ID=MS.gene24003.t1.exon3;Parent=MS.gene24003.t1 |
| chr1.3 | CDS | 48840134 | 48840325 | 48840134 | ID=cds.MS.gene24003.t1;Parent=MS.gene24003.t1 |
| chr1.3 | exon | 48839639 | 48839863 | 48839639 | ID=MS.gene24003.t1.exon4;Parent=MS.gene24003.t1 |
| chr1.3 | CDS | 48839639 | 48839863 | 48839639 | ID=cds.MS.gene24003.t1;Parent=MS.gene24003.t1 |
| chr1.3 | exon | 48839497 | 48839583 | 48839497 | ID=MS.gene24003.t1.exon5;Parent=MS.gene24003.t1 |
| chr1.3 | CDS | 48839497 | 48839583 | 48839497 | ID=cds.MS.gene24003.t1;Parent=MS.gene24003.t1 |
| chr1.3 | exon | 48839199 | 48839331 | 48839199 | ID=MS.gene24003.t1.exon6;Parent=MS.gene24003.t1 |
| chr1.3 | CDS | 48839199 | 48839331 | 48839199 | ID=cds.MS.gene24003.t1;Parent=MS.gene24003.t1 |
| chr1.3 | exon | 48838095 | 48838189 | 48838095 | ID=MS.gene24003.t1.exon7;Parent=MS.gene24003.t1 |
| chr1.3 | CDS | 48838095 | 48838189 | 48838095 | ID=cds.MS.gene24003.t1;Parent=MS.gene24003.t1 |
| chr1.3 | exon | 48837896 | 48838012 | 48837896 | ID=MS.gene24003.t1.exon8;Parent=MS.gene24003.t1 |
| chr1.3 | CDS | 48837896 | 48838012 | 48837896 | ID=cds.MS.gene24003.t1;Parent=MS.gene24003.t1 |
| Gene Sequence |
| Protein sequence |
