Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24543.t1 | XP_003589037.2 | 97 | 526 | 16 | 0 | 1 | 526 | 1 | 526 | 2.90E-281 | 977.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24543.t1 | G7IBA4 | 97.0 | 526 | 16 | 0 | 1 | 526 | 1 | 526 | 2.1e-281 | 977.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene24543 | 0.819245 | 1.29E-52 | -1.69E-46 |
| MS.gene049596 | MS.gene24543 | 0.819695 | 1.01E-52 | -1.69E-46 |
| MS.gene049622 | MS.gene24543 | 0.804724 | 1.88E-49 | -1.69E-46 |
| MS.gene049989 | MS.gene24543 | 0.904855 | 7.93E-80 | -1.69E-46 |
| MS.gene050297 | MS.gene24543 | 0.870703 | 1.19E-66 | -1.69E-46 |
| MS.gene050648 | MS.gene24543 | 0.821576 | 3.75E-53 | -1.69E-46 |
| MS.gene05124 | MS.gene24543 | 0.827541 | 1.48E-54 | -1.69E-46 |
| MS.gene051263 | MS.gene24543 | 0.851001 | 1.18E-60 | -1.69E-46 |
| MS.gene051629 | MS.gene24543 | 0.960057 | 3.96E-118 | -1.69E-46 |
| MS.gene051742 | MS.gene24543 | 0.828595 | 8.24E-55 | -1.69E-46 |
| MS.gene051816 | MS.gene24543 | 0.851434 | 8.90E-61 | -1.69E-46 |
| MS.gene051955 | MS.gene24543 | 0.82098 | 5.15E-53 | -1.69E-46 |
| MS.gene052308 | MS.gene24543 | 0.810576 | 1.08E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene24543 | 0.893475 | 6.07E-75 | -1.69E-46 |
| MS.gene053173 | MS.gene24543 | 0.821817 | 3.30E-53 | -1.69E-46 |
| MS.gene053348 | MS.gene24543 | 0.83707 | 6.46E-57 | -1.69E-46 |
| MS.gene053416 | MS.gene24543 | 0.867299 | 1.52E-65 | -1.69E-46 |
| MS.gene053417 | MS.gene24543 | 0.870385 | 1.52E-66 | -1.69E-46 |
| MS.gene05369 | MS.gene24543 | 0.811562 | 6.58E-51 | -1.69E-46 |
| MS.gene053929 | MS.gene24543 | 0.812298 | 4.55E-51 | -1.69E-46 |
| MS.gene054551 | MS.gene24543 | 0.826195 | 3.10E-54 | -1.69E-46 |
| MS.gene054593 | MS.gene24543 | 0.807213 | 5.64E-50 | -1.69E-46 |
| MS.gene054643 | MS.gene24543 | 0.81665 | 4.96E-52 | -1.69E-46 |
| MS.gene055308 | MS.gene24543 | 0.809834 | 1.56E-50 | -1.69E-46 |
| MS.gene055411 | MS.gene24543 | 0.80115 | 1.03E-48 | -1.69E-46 |
| MS.gene055578 | MS.gene24543 | 0.818277 | 2.13E-52 | -1.69E-46 |
| MS.gene055957 | MS.gene24543 | 0.855145 | 7.68E-62 | -1.69E-46 |
| MS.gene056041 | MS.gene24543 | 0.868823 | 4.90E-66 | -1.69E-46 |
| MS.gene056042 | MS.gene24543 | 0.817937 | 2.54E-52 | -1.69E-46 |
| MS.gene056335 | MS.gene24543 | 0.800005 | 1.77E-48 | -1.69E-46 |
| MS.gene05640 | MS.gene24543 | 0.841638 | 4.21E-58 | -1.69E-46 |
| MS.gene056526 | MS.gene24543 | 0.820261 | 7.53E-53 | -1.69E-46 |
| MS.gene057458 | MS.gene24543 | 0.838651 | 2.53E-57 | -1.69E-46 |
| MS.gene057771 | MS.gene24543 | 0.808345 | 3.24E-50 | -1.69E-46 |
| MS.gene058196 | MS.gene24543 | 0.843787 | 1.13E-58 | -1.69E-46 |
| MS.gene058197 | MS.gene24543 | 0.840432 | 8.73E-58 | -1.69E-46 |
| MS.gene058198 | MS.gene24543 | 0.843847 | 1.09E-58 | -1.69E-46 |
| MS.gene058827 | MS.gene24543 | 0.868627 | 5.67E-66 | -1.69E-46 |
| MS.gene058828 | MS.gene24543 | 0.829317 | 5.51E-55 | -1.69E-46 |
| MS.gene058853 | MS.gene24543 | 0.805209 | 1.49E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene24543 | 0.850789 | 1.35E-60 | -1.69E-46 |
| MS.gene059553 | MS.gene24543 | 0.833133 | 6.35E-56 | -1.69E-46 |
| MS.gene060473 | MS.gene24543 | 0.893534 | 5.75E-75 | -1.69E-46 |
| MS.gene060565 | MS.gene24543 | 0.885498 | 7.72E-72 | -1.69E-46 |
| MS.gene06057 | MS.gene24543 | 0.83207 | 1.17E-55 | -1.69E-46 |
| MS.gene06093 | MS.gene24543 | 0.836368 | 9.75E-57 | -1.69E-46 |
| MS.gene061099 | MS.gene24543 | 0.82977 | 4.28E-55 | -1.69E-46 |
| MS.gene061260 | MS.gene24543 | 0.871978 | 4.52E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24543.t1 | MTR_1g016740 | 97.148 | 526 | 15 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1062 |
| MS.gene24543.t1 | MTR_6g091790 | 31.961 | 413 | 255 | 7 | 1 | 405 | 1 | 395 | 4.46e-54 | 191 |
| MS.gene24543.t1 | MTR_6g091900 | 31.829 | 421 | 247 | 10 | 1 | 414 | 1 | 388 | 2.84e-51 | 181 |
| MS.gene24543.t1 | MTR_6g091790 | 31.807 | 393 | 242 | 7 | 1 | 385 | 1 | 375 | 8.43e-49 | 173 |
| MS.gene24543.t1 | MTR_6g092160 | 32.517 | 286 | 173 | 7 | 1 | 276 | 1 | 276 | 1.93e-26 | 109 |
| MS.gene24543.t1 | MTR_6g092160 | 32.753 | 287 | 173 | 7 | 1 | 277 | 1 | 277 | 2.78e-26 | 109 |
| MS.gene24543.t1 | MTR_6g092190 | 28.462 | 260 | 148 | 6 | 1 | 258 | 1 | 224 | 8.36e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24543.t1 | AT5G11780 | 34.308 | 513 | 279 | 16 | 13 | 515 | 16 | 480 | 9.02e-81 | 261 |
Find 137 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATCGTTTGATGGGTTT+TGG | 0.172397 | 1.2:+5998704 | MS.gene24543:CDS |
| TGTGACGGTGGTGGTGAATC+TGG | 0.185538 | 1.2:+5998887 | MS.gene24543:CDS |
| TCCATGTATAGAACTTAAAA+AGG | 0.209498 | 1.2:-6001970 | None:intergenic |
| TCCATGTATAGAAGTTAAAA+AGG | 0.215610 | 1.2:-6002036 | None:intergenic |
| GAACACGGATTGGCAATATT+TGG | 0.248245 | 1.2:+6001867 | MS.gene24543:CDS |
| AACTTCACTGGTTGCGGTTA+AGG | 0.257652 | 1.2:+5998598 | MS.gene24543:CDS |
| TTCCCATTCAATTGATCAAC+TGG | 0.297157 | 1.2:+6001478 | MS.gene24543:CDS |
| GGGTTGTGAGGTTGGTTATT+TGG | 0.299959 | 1.2:+5998979 | MS.gene24543:CDS |
| AATTGATAGCGAAATCTTTC+AGG | 0.305089 | 1.2:-6001264 | None:intergenic |
| TGATGCTAGAGTTGGGGTTT+TGG | 0.312253 | 1.2:+5998823 | MS.gene24543:CDS |
| TGAGGTGAAATCGGTGAAAT+TGG | 0.317673 | 1.2:-5998471 | None:intergenic |
| GGTAGCACCGTTGCGGTATT+CGG | 0.322536 | 1.2:-5998450 | None:intergenic |
| TGTGAGGTTGGTTATTTGGC+TGG | 0.324431 | 1.2:+5998983 | MS.gene24543:CDS |
| TTCAGGTTATGACGGGGTTT+CGG | 0.342353 | 1.2:+5999104 | MS.gene24543:CDS |
| GTTGCATGCTGCAGCAGTTC+AGG | 0.345498 | 1.2:+5999087 | MS.gene24543:CDS |
| AAGAGTGAAGTTGAGGTTAA+TGG | 0.346324 | 1.2:+5998797 | MS.gene24543:CDS |
| GTTTGAGATTTATCGTTTGA+TGG | 0.347535 | 1.2:+5998697 | MS.gene24543:CDS |
| GCAATATTTGGTTGTGGAAC+TGG | 0.348987 | 1.2:+6001879 | MS.gene24543:CDS |
| ACTTCACTGGTTGCGGTTAA+GGG | 0.353217 | 1.2:+5998599 | MS.gene24543:CDS |
| GTGAGGTTGGTTATTTGGCT+GGG | 0.359801 | 1.2:+5998984 | MS.gene24543:CDS |
| CCCTTGAATTTCATACTAAT+AGG | 0.362321 | 1.2:+5998558 | MS.gene24543:CDS |
| GGTTCGGAAGGGGATTGAAA+TGG | 0.367232 | 1.2:+5998958 | MS.gene24543:CDS |
| TTTGCCAGTGATCTCCTTGC+TGG | 0.370811 | 1.2:+6000178 | MS.gene24543:CDS |
| GTTCGGAAGGGGATTGAAAT+GGG | 0.378899 | 1.2:+5998959 | MS.gene24543:CDS |
| TGAAAGATTTCGCTATCAAT+TGG | 0.402702 | 1.2:+6001266 | MS.gene24543:CDS |
| ATTGAAATGGGTTGTGAGGT+TGG | 0.406186 | 1.2:+5998971 | MS.gene24543:CDS |
| ACCTATTAGTATGAAATTCA+AGG | 0.406338 | 1.2:-5998559 | None:intergenic |
| TGAGTGATGGGGTTCGGAAG+GGG | 0.411569 | 1.2:+5998948 | MS.gene24543:CDS |
| GTGACGGTGGTGGTGAATCT+GGG | 0.413825 | 1.2:+5998888 | MS.gene24543:CDS |
| AAGGAGATCACTGGCAAAGC+TGG | 0.420916 | 1.2:-6000173 | None:intergenic |
| TTCTAGAACTTCACTGGTTG+CGG | 0.421114 | 1.2:+5998592 | MS.gene24543:CDS |
| TACAGGGAAAAGGGTGATCA+TGG | 0.421383 | 1.2:+6001414 | MS.gene24543:intron |
| AATGGTGGTGATGCTAGAGT+TGG | 0.423330 | 1.2:+5998815 | MS.gene24543:CDS |
| TAGAACCACAGAAGTGGAAT+TGG | 0.423743 | 1.2:-5998530 | None:intergenic |
| ATGGTGGTGATGCTAGAGTT+GGG | 0.425809 | 1.2:+5998816 | MS.gene24543:CDS |
| GGGGATCGCGAGAGGGGAGA+AGG | 0.432937 | 1.2:+5999057 | MS.gene24543:CDS |
| AGGAACTGTGCCTATGCTTC+CGG | 0.434210 | 1.2:+6002001 | MS.gene24543:CDS |
| AAATTGAGGGTTTGGTGGAA+GGG | 0.439420 | 1.2:+5998744 | MS.gene24543:CDS |
| GTTGGTGGTGATTGTTTGAA+AGG | 0.443415 | 1.2:+5998911 | MS.gene24543:CDS |
| CGAACCCCATCACTCACAAA+AGG | 0.448596 | 1.2:-5998941 | None:intergenic |
| TCTGCTTGGTTACAGGGAAA+AGG | 0.448658 | 1.2:+6001404 | MS.gene24543:intron |
| AATTGAGGGTTTGGTGGAAG+GGG | 0.450119 | 1.2:+5998745 | MS.gene24543:CDS |
| GTGAGTGATGGGGTTCGGAA+GGG | 0.455588 | 1.2:+5998947 | MS.gene24543:CDS |
| CTGCTTGGTTACAGGGAAAA+GGG | 0.455759 | 1.2:+6001405 | MS.gene24543:intron |
| TTTGAGATTTATCGTTTGAT+GGG | 0.457024 | 1.2:+5998698 | MS.gene24543:CDS |
| AACCCAGTTGATCAATTGAA+TGG | 0.459406 | 1.2:-6001481 | None:intergenic |
| TTGGTGGTGATTGTTTGAAA+GGG | 0.460482 | 1.2:+5998912 | MS.gene24543:CDS |
| GAAGAGTGAAATTGAGGGTT+TGG | 0.461305 | 1.2:+5998736 | MS.gene24543:CDS |
| TCATTCATTAATTGTCAAGC+TGG | 0.461966 | 1.2:+6001220 | MS.gene24543:CDS |
| GAAATTGAGGGTTTGGTGGA+AGG | 0.462960 | 1.2:+5998743 | MS.gene24543:CDS |
| AAGAACTGTGCCTATGCTTC+CGG | 0.464773 | 1.2:+6001935 | MS.gene24543:CDS |
| TGTGAGTGATGGGGTTCGGA+AGG | 0.467210 | 1.2:+5998946 | MS.gene24543:CDS |
| GCAGCAGTTCAGGTTATGAC+GGG | 0.467718 | 1.2:+5999097 | MS.gene24543:CDS |
| TGAGGTTGGTTATTTGGCTG+GGG | 0.467778 | 1.2:+5998985 | MS.gene24543:CDS |
| AACTCACTTATAAGATCAAT+AGG | 0.470267 | 1.2:-6001555 | None:intergenic |
| AGAAGTGAAGAGTGAAATTG+AGG | 0.470560 | 1.2:+5998730 | MS.gene24543:CDS |
| CTGCTTGTTTCGTGTTGCGA+TGG | 0.470961 | 1.2:+5998632 | MS.gene24543:CDS |
| GGAGAAGATTGAGGTGAAAT+CGG | 0.471563 | 1.2:-5998480 | None:intergenic |
| TGCGGTATTCGGTTAGGAAA+CGG | 0.474041 | 1.2:-5998439 | None:intergenic |
| AGCATTGGTTGGTAGTAAAG+TGG | 0.474818 | 1.2:-5998401 | None:intergenic |
| TTCTATACATGGAGGGTTCG+TGG | 0.487374 | 1.2:+6002046 | MS.gene24543:CDS |
| AGCTGCTGAGGAACACGGAT+TGG | 0.491886 | 1.2:+6001857 | MS.gene24543:CDS |
| CACCGTTGCGGTATTCGGTT+AGG | 0.495050 | 1.2:-5998445 | None:intergenic |
| GTACTATTCTGTGATGATGA+TGG | 0.496979 | 1.2:+6001192 | MS.gene24543:CDS |
| TCATCATCACAGAATAGTAC+AGG | 0.498391 | 1.2:-6001189 | None:intergenic |
| ACCCAGTTGATCAATTGAAT+GGG | 0.505767 | 1.2:-6001480 | None:intergenic |
| TTGATTGATTCTTTGAGCAT+TGG | 0.507350 | 1.2:-5998416 | None:intergenic |
| GTGGACGCCGTAAGTTTGTC+TGG | 0.507922 | 1.2:+6002110 | MS.gene24543:CDS |
| AGAAGCTTCTAGAACTTCAC+TGG | 0.511669 | 1.2:+5998586 | MS.gene24543:CDS |
| CTTATGTAAATTCCTTCTGT+AGG | 0.514311 | 1.2:+6001448 | MS.gene24543:CDS |
| TGGATGGTTGATTGTGACGG+TGG | 0.519274 | 1.2:+5998875 | MS.gene24543:CDS |
| GCATTGGTTGGTAGTAAAGT+GGG | 0.519982 | 1.2:-5998400 | None:intergenic |
| GCAACTAGAAAACGCAAAGA+AGG | 0.525322 | 1.2:+6002164 | MS.gene24543:CDS |
| GAAGTGAAGAGTGAAATTGA+GGG | 0.532302 | 1.2:+5998731 | MS.gene24543:CDS |
| GAGTGAAATTGAGGGTTTGG+TGG | 0.538067 | 1.2:+5998739 | MS.gene24543:CDS |
| TGGTGGTGATGCTAGAGTTG+GGG | 0.538164 | 1.2:+5998817 | MS.gene24543:CDS |
| GGATTGGCAATATTTGGTTG+TGG | 0.538609 | 1.2:+6001873 | MS.gene24543:CDS |
| TCACAATCAACCATCCAAAC+CGG | 0.540267 | 1.2:-5998869 | None:intergenic |
| ATGGTTGATTGTGACGGTGG+TGG | 0.541207 | 1.2:+5998878 | MS.gene24543:CDS |
| AGCGAAATCTTTCAGGCTGT+CGG | 0.543878 | 1.2:-6001257 | None:intergenic |
| TGAGGCGGGGATCGCGAGAG+GGG | 0.544183 | 1.2:+5999051 | MS.gene24543:CDS |
| TTGTATGAAGAGTGAAGTTG+AGG | 0.545439 | 1.2:+5998790 | MS.gene24543:CDS |
| GATCAATTGAATGGGAATGC+AGG | 0.547063 | 1.2:-6001472 | None:intergenic |
| TTGTTGATTTGATACCGGTT+TGG | 0.550293 | 1.2:+5998855 | MS.gene24543:CDS |
| GAACCCCATCACTCACAAAA+GGG | 0.551030 | 1.2:-5998940 | None:intergenic |
| CCTATTAGTATGAAATTCAA+GGG | 0.552310 | 1.2:-5998558 | None:intergenic |
| GGTGGTGGTGAATCTGGGGT+TGG | 0.555180 | 1.2:+5998893 | MS.gene24543:CDS |
| TTTGAGGCGGGGATCGCGAG+AGG | 0.561298 | 1.2:+5999049 | MS.gene24543:CDS |
| AACCACAGAAGTGGAATTGG+TGG | 0.561727 | 1.2:-5998527 | None:intergenic |
| GGTGGTGAATCTGGGGTTGG+TGG | 0.563041 | 1.2:+5998896 | MS.gene24543:CDS |
| ATCATCACCAGACAAACTTA+CGG | 0.564664 | 1.2:-6002117 | None:intergenic |
| TGCAGCAGTTCAGGTTATGA+CGG | 0.565355 | 1.2:+5999096 | MS.gene24543:CDS |
| TGATTTGATACCGGTTTGGA+TGG | 0.570864 | 1.2:+5998859 | MS.gene24543:CDS |
| TGTTCAACCACCGGAAGCAT+AGG | 0.572107 | 1.2:-6002011 | None:intergenic |
| ACCCACCAATTCCACTTCTG+TGG | 0.572448 | 1.2:+5998525 | MS.gene24543:CDS |
| TTGATTCTTTGAGCATTGGT+TGG | 0.573059 | 1.2:-5998412 | None:intergenic |
| CTTCTAGCTGCTGAGGAACA+CGG | 0.574329 | 1.2:+6001852 | MS.gene24543:CDS |
| AAAACGCAAAGAAGGAATTG+AGG | 0.576892 | 1.2:+6002172 | MS.gene24543:CDS |
| ATGGATGTGTCGCGATGAAG+AGG | 0.578592 | 1.2:+5998651 | MS.gene24543:CDS |
| AGCGGCATAGACAGAAAGAT+CGG | 0.579831 | 1.2:+6001513 | MS.gene24543:CDS |
| TGTTTGACCACCGGAAGCAT+AGG | 0.585831 | 1.2:-6001945 | None:intergenic |
| TGAAGTGGTGTGAATTGCGC+GGG | 0.586090 | 1.2:-5998501 | None:intergenic |
| TCCCATTCAATTGATCAACT+GGG | 0.586710 | 1.2:+6001479 | MS.gene24543:CDS |
| GGGGATTGAAATGGGTTGTG+AGG | 0.589661 | 1.2:+5998967 | MS.gene24543:CDS |
| ACAGGGAAAAGGGTGATCAT+GGG | 0.591860 | 1.2:+6001415 | MS.gene24543:intron |
| GTTTGGATGGTTGATTGTGA+CGG | 0.592189 | 1.2:+5998872 | MS.gene24543:CDS |
| TCACTGTTGCTTGAATGTAC+AGG | 0.592735 | 1.2:-6002261 | None:intergenic |
| CATTGGTTGGTAGTAAAGTG+GGG | 0.592808 | 1.2:-5998399 | None:intergenic |
| GCTGAATAGAACCACAGAAG+TGG | 0.594045 | 1.2:-5998536 | None:intergenic |
| TTGAGGCGGGGATCGCGAGA+GGG | 0.594625 | 1.2:+5999050 | MS.gene24543:CDS |
| AGTCAGCTATACAGTCTGCT+AGG | 0.596408 | 1.2:+6001302 | MS.gene24543:CDS |
| TGGAATTGGTGGGTCTGAAG+TGG | 0.597501 | 1.2:-5998516 | None:intergenic |
| TGAAATTGGTAGCACCGTTG+CGG | 0.601583 | 1.2:-5998457 | None:intergenic |
| AACTGGCAAGCATCGTGCAA+AGG | 0.604651 | 1.2:+6001896 | MS.gene24543:CDS |
| ATTGGTTGGTAGTAAAGTGG+GGG | 0.609441 | 1.2:-5998398 | None:intergenic |
| AGAATGGCTTCTAGCTGCTG+AGG | 0.613476 | 1.2:+6001845 | MS.gene24543:intron |
| CTGAAGTGGTGTGAATTGCG+CGG | 0.614652 | 1.2:-5998502 | None:intergenic |
| TCAATAGGAGTGGAAACACT+TGG | 0.615988 | 1.2:-6001540 | None:intergenic |
| CTTACCAGCAAGGAGATCAC+TGG | 0.624906 | 1.2:-6000182 | None:intergenic |
| AACTGTGCCTATGCTTCCGG+TGG | 0.625094 | 1.2:+6001938 | MS.gene24543:CDS |
| TGACGGTGGTGGTGAATCTG+GGG | 0.625322 | 1.2:+5998889 | MS.gene24543:CDS |
| GTACATTCAAGCAACAGTGA+TGG | 0.626221 | 1.2:+6002264 | MS.gene24543:CDS |
| AACTGTGCCTATGCTTCCGG+TGG | 0.628824 | 1.2:+6002004 | MS.gene24543:CDS |
| CATCATCACAGAATAGTACA+GGG | 0.630428 | 1.2:-6001188 | None:intergenic |
| ACTTATAAGATCAATAGGAG+TGG | 0.641994 | 1.2:-6001550 | None:intergenic |
| GGGAATGCAGGACCTACAGA+AGG | 0.642543 | 1.2:-6001460 | None:intergenic |
| CAGCAGTTCAGGTTATGACG+GGG | 0.647188 | 1.2:+5999098 | MS.gene24543:CDS |
| AATTGCGCGGGAGAAGATTG+AGG | 0.647307 | 1.2:-5998489 | None:intergenic |
| ACCACAGAAGTGGAATTGGT+GGG | 0.661008 | 1.2:-5998526 | None:intergenic |
| TATGATGGTACTTACCAGCA+AGG | 0.661766 | 1.2:-6000192 | None:intergenic |
| TTCCTAACCGAATACCGCAA+CGG | 0.665195 | 1.2:+5998443 | MS.gene24543:CDS |
| AACTGGGTTACTCGTCAAAG+CGG | 0.670412 | 1.2:+6001495 | MS.gene24543:CDS |
| CGATAAATCTCAAACACCAA+CGG | 0.671461 | 1.2:-5998689 | None:intergenic |
| TTGGTTGGTAGTAAAGTGGG+GGG | 0.687195 | 1.2:-5998397 | None:intergenic |
| AGTGAAGTTGAGGTTAATGG+TGG | 0.690712 | 1.2:+5998800 | MS.gene24543:CDS |
| TGTGTCGCGATGAAGAGGAT+CGG | 0.711856 | 1.2:+5998656 | MS.gene24543:CDS |
| TGTAGAGATGCATGATACTG+TGG | 0.718185 | 1.2:+6002091 | MS.gene24543:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAACTTATATGAGT+AGG | - | chr1.2:6000714-6000733 | None:intergenic | 15.0% |
| !! | AAAATAAACTTATATGAGTA+GGG | - | chr1.2:6000713-6000732 | None:intergenic | 15.0% |
| !! | GAAAGAATAATAAAAGAAAA+TGG | - | chr1.2:6001596-6001615 | None:intergenic | 15.0% |
| !! | TATACAAGTTATACAAATAA+AGG | - | chr1.2:6000028-6000047 | None:intergenic | 15.0% |
| !!! | TATAATCTTTTCTGTAAAAT+AGG | - | chr1.2:6000668-6000687 | None:intergenic | 15.0% |
| !!! | TATTTTACAGAAAAGATTAT+AGG | + | chr1.2:6000667-6000686 | MS.gene24543:intron | 15.0% |
| !! | AATAATAAAAGAAAATGGAG+GGG | - | chr1.2:6001591-6001610 | None:intergenic | 20.0% |
| !! | AGAATAATAAAAGAAAATGG+AGG | - | chr1.2:6001593-6001612 | None:intergenic | 20.0% |
| !! | ATAATGTTTGATAAATGAAC+TGG | - | chr1.2:6000592-6000611 | None:intergenic | 20.0% |
| !! | GAATAATAAAAGAAAATGGA+GGG | - | chr1.2:6001592-6001611 | None:intergenic | 20.0% |
| !! | TATAAAAAACAGAACAAAAC+AGG | - | chr1.2:6000535-6000554 | None:intergenic | 20.0% |
| !!! | AATTGAAATTTTTGTGATGT+TGG | + | chr1.2:6000809-6000828 | MS.gene24543:intron | 20.0% |
| !!! | GAAAACTATGATTTAGATTT+TGG | + | chr1.2:6000831-6000850 | MS.gene24543:intron | 20.0% |
| !!! | TATTTTTCATGCGATAATTT+AGG | + | chr1.2:6000727-6000746 | MS.gene24543:intron | 20.0% |
| !!! | TTTCGGAATTTTTACTTTTT+GGG | + | chr1.2:5999121-5999140 | MS.gene24543:CDS | 20.0% |
| !!! | TTTTTTAAAAAAGTTCAGCA+AGG | + | chr1.2:6001648-6001667 | MS.gene24543:intron | 20.0% |
| ! | AAAAAAATCTGACAGACAAA+AGG | - | chr1.2:6001777-6001796 | None:intergenic | 25.0% |
| ! | AAACATTATCTTAGATTAGC+TGG | + | chr1.2:6000603-6000622 | MS.gene24543:intron | 25.0% |
| ! | AACTCACTTATAAGATCAAT+AGG | - | chr1.2:6001558-6001577 | None:intergenic | 25.0% |
| ! | AATTAAATTTCACCAAGATC+TGG | - | chr1.2:5999862-5999881 | None:intergenic | 25.0% |
| ! | ACACTGATATAACTTGAAAT+TGG | - | chr1.2:6001697-6001716 | None:intergenic | 25.0% |
| ! | ACCTATTAGTATGAAATTCA+AGG | - | chr1.2:5998562-5998581 | None:intergenic | 25.0% |
| ! | CACTGATATAACTTGAAATT+GGG | - | chr1.2:6001696-6001715 | None:intergenic | 25.0% |
| ! | CCATGTATAGAACTTAAAAA+GGG | - | chr1.2:6001972-6001991 | None:intergenic | 25.0% |
| ! | CCATGTATAGAAGTTAAAAA+GGG | - | chr1.2:6002038-6002057 | None:intergenic | 25.0% |
| ! | CCTATTAGTATGAAATTCAA+GGG | - | chr1.2:5998561-5998580 | None:intergenic | 25.0% |
| ! | GAGTTTATATGTAAGTTGTT+TGG | - | chr1.2:5999677-5999696 | None:intergenic | 25.0% |
| ! | GATAATAAGCACTTATGTAT+AGG | - | chr1.2:5999601-5999620 | None:intergenic | 25.0% |
| ! | GCATTTACTTAGTTGTAATT+CGG | + | chr1.2:6000222-6000241 | MS.gene24543:intron | 25.0% |
| ! | TAATCTTACACATAGTTTCA+TGG | - | chr1.2:6000291-6000310 | None:intergenic | 25.0% |
| ! | TAGTGATTTCTTATTCAGAA+TGG | + | chr1.2:6001829-6001848 | MS.gene24543:intron | 25.0% |
| ! | TAGTTGTAATTCGGAATTAA+GGG | + | chr1.2:6000231-6000250 | MS.gene24543:intron | 25.0% |
| ! | TCATTGCAACAAAATTGTTA+AGG | - | chr1.2:5999742-5999761 | None:intergenic | 25.0% |
| ! | TCCATGTATAGAACTTAAAA+AGG | - | chr1.2:6001973-6001992 | None:intergenic | 25.0% |
| ! | TCCATGTATAGAAGTTAAAA+AGG | - | chr1.2:6002039-6002058 | None:intergenic | 25.0% |
| ! | TGCCTCAATATAATTATGTT+CGG | + | chr1.2:5999786-5999805 | MS.gene24543:intron | 25.0% |
| ! | TGTCATATTCAACAATTTAC+TGG | + | chr1.2:6001120-6001139 | MS.gene24543:intron | 25.0% |
| ! | TTAGTTGTAATTCGGAATTA+AGG | + | chr1.2:6000230-6000249 | MS.gene24543:intron | 25.0% |
| ! | TTGATTCTGTTTATTGATGT+TGG | + | chr1.2:6000770-6000789 | MS.gene24543:intron | 25.0% |
| !! | ACTACAATTTAAAATCATGC+TGG | - | chr1.2:5999175-5999194 | None:intergenic | 25.0% |
| !! | CAGTATATTGTCTTTGAAAA+GGG | + | chr1.2:6000922-6000941 | MS.gene24543:intron | 25.0% |
| !! | CATAATTATATTGAGGCATT+TGG | - | chr1.2:5999784-5999803 | None:intergenic | 25.0% |
| !! | CTTTTCAAAGACAATATACT+GGG | - | chr1.2:6000923-6000942 | None:intergenic | 25.0% |
| !! | TCTTTTCTGTAAAATAGGTT+TGG | - | chr1.2:6000663-6000682 | None:intergenic | 25.0% |
| !! | TTTGAGATTTATCGTTTGAT+GGG | + | chr1.2:5998698-5998717 | MS.gene24543:CDS | 25.0% |
| !!! | AGGTTTTATAAAATGGATTG+CGG | - | chr1.2:5999320-5999339 | None:intergenic | 25.0% |
| !!! | GAAAATGTGTTTGATTTTTG+AGG | + | chr1.2:5999033-5999052 | MS.gene24543:CDS | 25.0% |
| !!! | GTCATCAAGGTTTTATAAAA+TGG | - | chr1.2:5999327-5999346 | None:intergenic | 25.0% |
| !!! | GTTTCGGAATTTTTACTTTT+TGG | + | chr1.2:5999120-5999139 | MS.gene24543:CDS | 25.0% |
| !!! | TTGTGTTTTAATACTCAAGT+TGG | + | chr1.2:5999900-5999919 | MS.gene24543:intron | 25.0% |
| !!! | TTTTAACTTCTATACATGGA+GGG | + | chr1.2:6002039-6002058 | MS.gene24543:CDS | 25.0% |
| !!! | TTTTAAGTTCTATACATGGA+GGG | + | chr1.2:6001973-6001992 | MS.gene24543:CDS | 25.0% |
| !!! | TTTTTAACTTCTATACATGG+AGG | + | chr1.2:6002038-6002057 | MS.gene24543:CDS | 25.0% |
| !!! | TTTTTAAGTTCTATACATGG+AGG | + | chr1.2:6001972-6001991 | MS.gene24543:CDS | 25.0% |
| AAAGAATGCATGACAACAAA+TGG | - | chr1.2:5999703-5999722 | None:intergenic | 30.0% | |
| ACTTATAAGATCAATAGGAG+TGG | - | chr1.2:6001553-6001572 | None:intergenic | 30.0% | |
| AGTCTAAATAGTTGTCATCA+AGG | - | chr1.2:5999340-5999359 | None:intergenic | 30.0% | |
| ATTATGTTCGGTCATTATGT+TGG | + | chr1.2:5999798-5999817 | MS.gene24543:intron | 30.0% | |
| CAGAATCAATATTTCAACTC+TGG | - | chr1.2:6000759-6000778 | None:intergenic | 30.0% | |
| CCCTTGAATTTCATACTAAT+AGG | + | chr1.2:5998558-5998577 | MS.gene24543:CDS | 30.0% | |
| CTTATGTAAATTCCTTCTGT+AGG | + | chr1.2:6001448-6001467 | MS.gene24543:CDS | 30.0% | |
| GAAAATTAAGCTGTTAACGT+AGG | + | chr1.2:5999646-5999665 | MS.gene24543:intron | 30.0% | |
| GAACAAAACAGGACTAAATA+AGG | - | chr1.2:6000524-6000543 | None:intergenic | 30.0% | |
| GACCGAACATAATTATATTG+AGG | - | chr1.2:5999791-5999810 | None:intergenic | 30.0% | |
| GTAAATGCTAAAGCATATGA+TGG | - | chr1.2:6000210-6000229 | None:intergenic | 30.0% | |
| GTAGCTGTGAAATATGAATT+AGG | + | chr1.2:6001342-6001361 | MS.gene24543:intron | 30.0% | |
| GTGAAATATGAATTAGGAAG+TGG | + | chr1.2:6001348-6001367 | MS.gene24543:intron | 30.0% | |
| TATATTACTCAGTTTGACGT+AGG | + | chr1.2:6000044-6000063 | MS.gene24543:intron | 30.0% | |
| TCAAGTAACCTCTCTATAAA+GGG | - | chr1.2:6000400-6000419 | None:intergenic | 30.0% | |
| TCATATTTCACAGCTACAAT+AGG | - | chr1.2:6001339-6001358 | None:intergenic | 30.0% | |
| TCATTCATTAATTGTCAAGC+TGG | + | chr1.2:6001220-6001239 | MS.gene24543:CDS | 30.0% | |
| TGAAAGATTTCGCTATCAAT+TGG | + | chr1.2:6001266-6001285 | MS.gene24543:CDS | 30.0% | |
| TGACATAATCTTCTCAACAT+TGG | + | chr1.2:6000977-6000996 | MS.gene24543:intron | 30.0% | |
| TTCATGCGATAATTTAGGTA+AGG | + | chr1.2:6000732-6000751 | MS.gene24543:intron | 30.0% | |
| ! | AATTCGAGTTCTTTGGTTTA+TGG | + | chr1.2:6001031-6001050 | MS.gene24543:intron | 30.0% |
| ! | ATAAGATCCGACAGTATTTT+TGG | + | chr1.2:6000628-6000647 | MS.gene24543:intron | 30.0% |
| ! | ATGCATCATACTTTTCTTGA+AGG | - | chr1.2:6001075-6001094 | None:intergenic | 30.0% |
| ! | CCAGTATATTGTCTTTGAAA+AGG | + | chr1.2:6000921-6000940 | MS.gene24543:intron | 30.0% |
| ! | CCTTTTCAAAGACAATATAC+TGG | - | chr1.2:6000924-6000943 | None:intergenic | 30.0% |
| ! | GTTTGAGATTTATCGTTTGA+TGG | + | chr1.2:5998697-5998716 | MS.gene24543:CDS | 30.0% |
| ! | TGCATCATACTTTTCTTGAA+GGG | - | chr1.2:6001074-6001093 | None:intergenic | 30.0% |
| ! | TGTAGATTCTACAGCATTTT+AGG | + | chr1.2:5999833-5999852 | MS.gene24543:intron | 30.0% |
| ! | TTGATTGATTCTTTGAGCAT+TGG | - | chr1.2:5998419-5998438 | None:intergenic | 30.0% |
| !! | AATGTGTTTGATTTTTGAGG+CGG | + | chr1.2:5999036-5999055 | MS.gene24543:CDS | 30.0% |
| !! | AATTGATAGCGAAATCTTTC+AGG | - | chr1.2:6001267-6001286 | None:intergenic | 30.0% |
| !!! | ATTTATCGTTTGATGGGTTT+TGG | + | chr1.2:5998704-5998723 | MS.gene24543:CDS | 30.0% |
| !!! | CCCTTTTTAACTTCTATACA+TGG | + | chr1.2:6002035-6002054 | MS.gene24543:CDS | 30.0% |
| !!! | CCCTTTTTAAGTTCTATACA+TGG | + | chr1.2:6001969-6001988 | MS.gene24543:CDS | 30.0% |
| !!! | TTTATCGTTTGATGGGTTTT+GGG | + | chr1.2:5998705-5998724 | MS.gene24543:CDS | 30.0% |
| AAAACGCAAAGAAGGAATTG+AGG | + | chr1.2:6002172-6002191 | MS.gene24543:CDS | 35.0% | |
| AAAGAAAATGGAGGGGTAAT+TGG | - | chr1.2:6001584-6001603 | None:intergenic | 35.0% | |
| AACAAGTCTGATAATCTGCT+TGG | + | chr1.2:6001390-6001409 | MS.gene24543:intron | 35.0% | |
| AACCCAGTTGATCAATTGAA+TGG | - | chr1.2:6001484-6001503 | None:intergenic | 35.0% | |
| AAGAGTGAAGTTGAGGTTAA+TGG | + | chr1.2:5998797-5998816 | MS.gene24543:CDS | 35.0% | |
| ACCCAGTTGATCAATTGAAT+GGG | - | chr1.2:6001483-6001502 | None:intergenic | 35.0% | |
| ACTTCTCTTTGACTGTTAAG+AGG | + | chr1.2:6001617-6001636 | MS.gene24543:intron | 35.0% | |
| AGAAGTGAAGAGTGAAATTG+AGG | + | chr1.2:5998730-5998749 | MS.gene24543:CDS | 35.0% | |
| AGCTAATGTAATCTCAACTG+CGG | + | chr1.2:5999233-5999252 | MS.gene24543:intron | 35.0% | |
| ATAAGGAAAAGTGGTAAGTG+TGG | - | chr1.2:6000507-6000526 | None:intergenic | 35.0% | |
| ATCATCACCAGACAAACTTA+CGG | - | chr1.2:6002120-6002139 | None:intergenic | 35.0% | |
| ATGAATTAGGAAGTGGTTTC+TGG | + | chr1.2:6001355-6001374 | MS.gene24543:intron | 35.0% | |
| CAAAGAACTCGAATTACCAA+CGG | - | chr1.2:6001026-6001045 | None:intergenic | 35.0% | |
| CAAGTAACCTCTCTATAAAG+GGG | - | chr1.2:6000399-6000418 | None:intergenic | 35.0% | |
| CAATTACTAAGTGTACAAGC+GGG | + | chr1.2:5999369-5999388 | MS.gene24543:intron | 35.0% | |
| CACATAGTTTCATGGAGAAA+AGG | - | chr1.2:6000283-6000302 | None:intergenic | 35.0% | |
| CAGCTTATGAAAATAGACTG+TGG | + | chr1.2:5999526-5999545 | MS.gene24543:intron | 35.0% | |
| CAGGACTAAATAAGGAAAAG+TGG | - | chr1.2:6000516-6000535 | None:intergenic | 35.0% | |
| CAGTGGCATCATAATATGAT+TGG | - | chr1.2:6000376-6000395 | None:intergenic | 35.0% | |
| CATCATCACAGAATAGTACA+GGG | - | chr1.2:6001191-6001210 | None:intergenic | 35.0% | |
| CGATAAATCTCAAACACCAA+CGG | - | chr1.2:5998692-5998711 | None:intergenic | 35.0% | |
| CTCAAGTAACCTCTCTATAA+AGG | - | chr1.2:6000401-6000420 | None:intergenic | 35.0% | |
| CTTGTACACTTAGTAATTGC+TGG | - | chr1.2:5999368-5999387 | None:intergenic | 35.0% | |
| GAAAAGATTATAGGTCACTC+AGG | + | chr1.2:6000676-6000695 | MS.gene24543:intron | 35.0% | |
| GAAGTGAAGAGTGAAATTGA+GGG | + | chr1.2:5998731-5998750 | MS.gene24543:CDS | 35.0% | |
| GCAAGGTGTATAATTGAATG+TGG | + | chr1.2:6001665-6001684 | MS.gene24543:intron | 35.0% | |
| GCAATTACTAAGTGTACAAG+CGG | + | chr1.2:5999368-5999387 | MS.gene24543:intron | 35.0% | |
| GGGAACTATACTTGAAGAAT+CGG | - | chr1.2:6000903-6000922 | None:intergenic | 35.0% | |
| GGTGAACTAAACAATTTCTC+TGG | - | chr1.2:6000882-6000901 | None:intergenic | 35.0% | |
| TAAGGAAAAGTGGTAAGTGT+GGG | - | chr1.2:6000506-6000525 | None:intergenic | 35.0% | |
| TCAAGTTATATCAGTGTCGT+TGG | + | chr1.2:6001700-6001719 | MS.gene24543:intron | 35.0% | |
| TCATCATCACAGAATAGTAC+AGG | - | chr1.2:6001192-6001211 | None:intergenic | 35.0% | |
| TCCCATTCAATTGATCAACT+GGG | + | chr1.2:6001479-6001498 | MS.gene24543:CDS | 35.0% | |
| TGATAATCTGCTTGGTTACA+GGG | + | chr1.2:6001398-6001417 | MS.gene24543:intron | 35.0% | |
| TTCCCATTCAATTGATCAAC+TGG | + | chr1.2:6001478-6001497 | MS.gene24543:CDS | 35.0% | |
| TTGTATGAAGAGTGAAGTTG+AGG | + | chr1.2:5998790-5998809 | MS.gene24543:CDS | 35.0% | |
| ! | GCTTATCAGATATGCTTTTG+AGG | + | chr1.2:6000138-6000157 | MS.gene24543:intron | 35.0% |
| ! | GTACTATTCTGTGATGATGA+TGG | + | chr1.2:6001192-6001211 | MS.gene24543:CDS | 35.0% |
| ! | TTTTCCCTTTTGTGAGTGAT+GGG | + | chr1.2:5998936-5998955 | MS.gene24543:CDS | 35.0% |
| ! | TTTTTCCCTTTTGTGAGTGA+TGG | + | chr1.2:5998935-5998954 | MS.gene24543:CDS | 35.0% |
| !! | TATGCTTTTGAGGATGATGT+TGG | + | chr1.2:6000148-6000167 | MS.gene24543:CDS | 35.0% |
| !! | TTACTGGTCGTTTTGCTATA+GGG | + | chr1.2:6001136-6001155 | MS.gene24543:intron | 35.0% |
| !! | TTGATTCTTTGAGCATTGGT+TGG | - | chr1.2:5998415-5998434 | None:intergenic | 35.0% |
| !! | TTGGTGGTGATTGTTTGAAA+GGG | + | chr1.2:5998912-5998931 | MS.gene24543:CDS | 35.0% |
| !! | TTGTTGATTTGATACCGGTT+TGG | + | chr1.2:5998855-5998874 | MS.gene24543:CDS | 35.0% |
| !! | TTTACTGGTCGTTTTGCTAT+AGG | + | chr1.2:6001135-6001154 | MS.gene24543:intron | 35.0% |
| !!! | ATCCGACAGTATTTTTGGTT+CGG | + | chr1.2:6000633-6000652 | MS.gene24543:intron | 35.0% |
| !!! | ATGTGTTTGATTTTTGAGGC+GGG | + | chr1.2:5999037-5999056 | MS.gene24543:CDS | 35.0% |
| !!! | GGGTTTTGTTGATTTGATAC+CGG | + | chr1.2:5998850-5998869 | MS.gene24543:CDS | 35.0% |
| !!! | TTATCGTTTGATGGGTTTTG+GGG | + | chr1.2:5998706-5998725 | MS.gene24543:CDS | 35.0% |
| AAAAAGGGATGTTCAACCAC+CGG | - | chr1.2:6002023-6002042 | None:intergenic | 40.0% | |
| AAAAAGGGATGTTTGACCAC+CGG | - | chr1.2:6001957-6001976 | None:intergenic | 40.0% | |
| AAGCACTTGTCAGACTGTTT+GGG | + | chr1.2:5999433-5999452 | MS.gene24543:intron | 40.0% | |
| ACTCAGTTTGACGTAGGATA+TGG | + | chr1.2:6000050-6000069 | MS.gene24543:intron | 40.0% | |
| AGATTGACCCATACAAAGAC+AGG | - | chr1.2:5999966-5999985 | None:intergenic | 40.0% | |
| AGTGAAGTTGAGGTTAATGG+TGG | + | chr1.2:5998800-5998819 | MS.gene24543:CDS | 40.0% | |
| AGTGTGGGATCCTATCTAAA+AGG | - | chr1.2:6000491-6000510 | None:intergenic | 40.0% | |
| AGTTGTCTCCTGTCTTTGTA+TGG | + | chr1.2:5999955-5999974 | MS.gene24543:intron | 40.0% | |
| AGTTTCATGGAGAAAAGGAG+AGG | - | chr1.2:6000278-6000297 | None:intergenic | 40.0% | |
| CTGATAATCTGCTTGGTTAC+AGG | + | chr1.2:6001397-6001416 | MS.gene24543:intron | 40.0% | |
| GAAGAGTGAAATTGAGGGTT+TGG | + | chr1.2:5998736-5998755 | MS.gene24543:CDS | 40.0% | |
| GATCAATTGAATGGGAATGC+AGG | - | chr1.2:6001475-6001494 | None:intergenic | 40.0% | |
| GCAACTAGAAAACGCAAAGA+AGG | + | chr1.2:6002164-6002183 | MS.gene24543:CDS | 40.0% | |
| GCAATATTTGGTTGTGGAAC+TGG | + | chr1.2:6001879-6001898 | MS.gene24543:CDS | 40.0% | |
| GGAAAGAGACTACGCATAAT+TGG | - | chr1.2:6001756-6001775 | None:intergenic | 40.0% | |
| GGAGAAGATTGAGGTGAAAT+CGG | - | chr1.2:5998483-5998502 | None:intergenic | 40.0% | |
| GTGTGGGATCCTATCTAAAA+GGG | - | chr1.2:6000490-6000509 | None:intergenic | 40.0% | |
| GTTGTCTCCTGTCTTTGTAT+GGG | + | chr1.2:5999956-5999975 | MS.gene24543:intron | 40.0% | |
| GTTTGGATGGTTGATTGTGA+CGG | + | chr1.2:5998872-5998891 | MS.gene24543:CDS | 40.0% | |
| TAAGCACCAATAAAGCAGTC+AGG | - | chr1.2:6000123-6000142 | None:intergenic | 40.0% | |
| TAAGCACTTGTCAGACTGTT+TGG | + | chr1.2:5999432-5999451 | MS.gene24543:intron | 40.0% | |
| TAGAACCACAGAAGTGGAAT+TGG | - | chr1.2:5998533-5998552 | None:intergenic | 40.0% | |
| TATGATGGTACTTACCAGCA+AGG | - | chr1.2:6000195-6000214 | None:intergenic | 40.0% | |
| TCAATAGGAGTGGAAACACT+TGG | - | chr1.2:6001543-6001562 | None:intergenic | 40.0% | |
| TCACAATCAACCATCCAAAC+CGG | - | chr1.2:5998872-5998891 | None:intergenic | 40.0% | |
| TCAGTTAAACCTATGCCAAG+TGG | - | chr1.2:6000345-6000364 | None:intergenic | 40.0% | |
| TCGGTCATTATGTTGGAGTT+TGG | + | chr1.2:5999805-5999824 | MS.gene24543:intron | 40.0% | |
| TGACTTCCTGACTGCTTTAT+TGG | + | chr1.2:6000114-6000133 | MS.gene24543:intron | 40.0% | |
| TGAGGTGAAATCGGTGAAAT+TGG | - | chr1.2:5998474-5998493 | None:intergenic | 40.0% | |
| TGCCGAACCAAAAATACTGT+CGG | - | chr1.2:6000638-6000657 | None:intergenic | 40.0% | |
| TGGTGATTGGATTCTGACTA+TGG | + | chr1.2:6001720-6001739 | MS.gene24543:intron | 40.0% | |
| TGTAGAGATGCATGATACTG+TGG | + | chr1.2:6002091-6002110 | MS.gene24543:CDS | 40.0% | |
| ! | CTTTGAAAAGGGCTACTACT+TGG | + | chr1.2:6000933-6000952 | MS.gene24543:intron | 40.0% |
| ! | GGATTGGCAATATTTGGTTG+TGG | + | chr1.2:6001873-6001892 | MS.gene24543:CDS | 40.0% |
| ! | TCAACATTGGCTACAATGCT+GGG | + | chr1.2:6000990-6001009 | MS.gene24543:intron | 40.0% |
| ! | TCACTGTTGCTTGAATGTAC+AGG | - | chr1.2:6002264-6002283 | None:intergenic | 40.0% |
| ! | TCTATACATGGAGGGTTTTC+AGG | + | chr1.2:6001981-6002000 | MS.gene24543:CDS | 40.0% |
| ! | TGGGGTATTTAGGATCTGTT+TGG | + | chr1.2:5999392-5999411 | MS.gene24543:intron | 40.0% |
| ! | TTTCCCTTTTGTGAGTGATG+GGG | + | chr1.2:5998937-5998956 | MS.gene24543:CDS | 40.0% |
| !! | AAATTGAGGGTTTGGTGGAA+GGG | + | chr1.2:5998744-5998763 | MS.gene24543:CDS | 40.0% |
| !! | AGAAGCTTCTAGAACTTCAC+TGG | + | chr1.2:5998586-5998605 | MS.gene24543:CDS | 40.0% |
| !! | AGCATTGGTTGGTAGTAAAG+TGG | - | chr1.2:5998404-5998423 | None:intergenic | 40.0% |
| !! | ATATCAGTGTCGTTGGTGAT+TGG | + | chr1.2:6001707-6001726 | MS.gene24543:intron | 40.0% |
| !! | ATTGAAATGGGTTGTGAGGT+TGG | + | chr1.2:5998971-5998990 | MS.gene24543:CDS | 40.0% |
| !! | ATTGGTTGGTAGTAAAGTGG+GGG | - | chr1.2:5998401-5998420 | None:intergenic | 40.0% |
| !! | CATGAGTTTAGTTCTGTGCT+TGG | - | chr1.2:6000562-6000581 | None:intergenic | 40.0% |
| !! | CATTGGTTGGTAGTAAAGTG+GGG | - | chr1.2:5998402-5998421 | None:intergenic | 40.0% |
| !! | CATTTTAGGAAGCCAGATCT+TGG | + | chr1.2:5999847-5999866 | MS.gene24543:intron | 40.0% |
| !! | CGTTGGTAATTCGAGTTCTT+TGG | + | chr1.2:6001024-6001043 | MS.gene24543:intron | 40.0% |
| !! | GAACACGGATTGGCAATATT+TGG | + | chr1.2:6001867-6001886 | MS.gene24543:CDS | 40.0% |
| !! | GCATTGGTTGGTAGTAAAGT+GGG | - | chr1.2:5998403-5998422 | None:intergenic | 40.0% |
| !! | GTTGGTGGTGATTGTTTGAA+AGG | + | chr1.2:5998911-5998930 | MS.gene24543:CDS | 40.0% |
| !! | TGATTTGATACCGGTTTGGA+TGG | + | chr1.2:5998859-5998878 | MS.gene24543:CDS | 40.0% |
| !! | TTCTAGAACTTCACTGGTTG+CGG | + | chr1.2:5998592-5998611 | MS.gene24543:CDS | 40.0% |
| !!! | TGTGTTTGATTTTTGAGGCG+GGG | + | chr1.2:5999038-5999057 | MS.gene24543:CDS | 40.0% |
| AACCACAGAAGTGGAATTGG+TGG | - | chr1.2:5998530-5998549 | None:intergenic | 45.0% | |
| AACTGGGTTACTCGTCAAAG+CGG | + | chr1.2:6001495-6001514 | MS.gene24543:CDS | 45.0% | |
| AAGAACTGTGCCTATGCTTC+CGG | + | chr1.2:6001935-6001954 | MS.gene24543:CDS | 45.0% | |
| ACAGGGAAAAGGGTGATCAT+GGG | + | chr1.2:6001415-6001434 | MS.gene24543:intron | 45.0% | |
| ACCACAGAAGTGGAATTGGT+GGG | - | chr1.2:5998529-5998548 | None:intergenic | 45.0% | |
| AGCGAAATCTTTCAGGCTGT+CGG | - | chr1.2:6001260-6001279 | None:intergenic | 45.0% | |
| AGCGGCATAGACAGAAAGAT+CGG | + | chr1.2:6001513-6001532 | MS.gene24543:CDS | 45.0% | |
| AGTCAGCTATACAGTCTGCT+AGG | + | chr1.2:6001302-6001321 | MS.gene24543:CDS | 45.0% | |
| CCTATCTAAAAGGGTGGAAC+AGG | - | chr1.2:6000481-6000500 | None:intergenic | 45.0% | |
| CTCGAATTACCAACGGAAGA+AGG | - | chr1.2:6001019-6001038 | None:intergenic | 45.0% | |
| CTGCTTGGTTACAGGGAAAA+GGG | + | chr1.2:6001405-6001424 | MS.gene24543:intron | 45.0% | |
| GAAAATGGAGGGGTAATTGG+TGG | - | chr1.2:6001581-6001600 | None:intergenic | 45.0% | |
| GAACCCCATCACTCACAAAA+GGG | - | chr1.2:5998943-5998962 | None:intergenic | 45.0% | |
| GAGTGAAATTGAGGGTTTGG+TGG | + | chr1.2:5998739-5998758 | MS.gene24543:CDS | 45.0% | |
| GCTGAATAGAACCACAGAAG+TGG | - | chr1.2:5998539-5998558 | None:intergenic | 45.0% | |
| GTGGAACAGGAGAACAAAAC+AGG | - | chr1.2:6000468-6000487 | None:intergenic | 45.0% | |
| GTTCGGAAGGGGATTGAAAT+GGG | + | chr1.2:5998959-5998978 | MS.gene24543:CDS | 45.0% | |
| TACAGGGAAAAGGGTGATCA+TGG | + | chr1.2:6001414-6001433 | MS.gene24543:intron | 45.0% | |
| TACTAAGTGTACAAGCGGGT+GGG | + | chr1.2:5999373-5999392 | MS.gene24543:intron | 45.0% | |
| TCTGCTTGGTTACAGGGAAA+AGG | + | chr1.2:6001404-6001423 | MS.gene24543:intron | 45.0% | |
| TGCGGTATTCGGTTAGGAAA+CGG | - | chr1.2:5998442-5998461 | None:intergenic | 45.0% | |
| TGGGATCCTATCTAAAAGGG+TGG | - | chr1.2:6000487-6000506 | None:intergenic | 45.0% | |
| TTACTAAGTGTACAAGCGGG+TGG | + | chr1.2:5999372-5999391 | MS.gene24543:intron | 45.0% | |
| TTCCTAACCGAATACCGCAA+CGG | + | chr1.2:5998443-5998462 | MS.gene24543:CDS | 45.0% | |
| TTCTATACATGGAGGGTTCG+TGG | + | chr1.2:6002046-6002065 | MS.gene24543:CDS | 45.0% | |
| ! | AAATCACCCCAGAAAGCACA+AGG | - | chr1.2:6000076-6000095 | None:intergenic | 45.0% |
| ! | AACTTCACTGGTTGCGGTTA+AGG | + | chr1.2:5998598-5998617 | MS.gene24543:CDS | 45.0% |
| ! | AATGGTGGTGATGCTAGAGT+TGG | + | chr1.2:5998815-5998834 | MS.gene24543:CDS | 45.0% |
| ! | ACTTCACTGGTTGCGGTTAA+GGG | + | chr1.2:5998599-5998618 | MS.gene24543:CDS | 45.0% |
| ! | ATGGATTGCGGCTGCAATTT+AGG | - | chr1.2:5999308-5999327 | None:intergenic | 45.0% |
| ! | ATGGTGGTGATGCTAGAGTT+GGG | + | chr1.2:5998816-5998835 | MS.gene24543:CDS | 45.0% |
| ! | CCTGTTCCACCCTTTTAGAT+AGG | + | chr1.2:6000478-6000497 | MS.gene24543:intron | 45.0% |
| ! | CTCAACATTGGCTACAATGC+TGG | + | chr1.2:6000989-6001008 | MS.gene24543:intron | 45.0% |
| ! | GGGTTGTGAGGTTGGTTATT+TGG | + | chr1.2:5998979-5998998 | MS.gene24543:CDS | 45.0% |
| ! | GTGAGGTTGGTTATTTGGCT+GGG | + | chr1.2:5998984-5999003 | MS.gene24543:CDS | 45.0% |
| ! | TGAAATTGGTAGCACCGTTG+CGG | - | chr1.2:5998460-5998479 | None:intergenic | 45.0% |
| ! | TGAGGTTGGTTATTTGGCTG+GGG | + | chr1.2:5998985-5999004 | MS.gene24543:CDS | 45.0% |
| ! | TGATGCTAGAGTTGGGGTTT+TGG | + | chr1.2:5998823-5998842 | MS.gene24543:CDS | 45.0% |
| ! | TGCAGCAGTTCAGGTTATGA+CGG | + | chr1.2:5999096-5999115 | MS.gene24543:CDS | 45.0% |
| ! | TGTGAGGTTGGTTATTTGGC+TGG | + | chr1.2:5998983-5999002 | MS.gene24543:CDS | 45.0% |
| ! | TTCAGGTTATGACGGGGTTT+CGG | + | chr1.2:5999104-5999123 | MS.gene24543:CDS | 45.0% |
| !! | AATTGAGGGTTTGGTGGAAG+GGG | + | chr1.2:5998745-5998764 | MS.gene24543:CDS | 45.0% |
| !! | ATATGGCCTTGTGCTTTCTG+GGG | + | chr1.2:6000067-6000086 | MS.gene24543:intron | 45.0% |
| !! | CTTTTGTGAGTGATGGGGTT+CGG | + | chr1.2:5998942-5998961 | MS.gene24543:CDS | 45.0% |
| !! | GAAATTGAGGGTTTGGTGGA+AGG | + | chr1.2:5998743-5998762 | MS.gene24543:CDS | 45.0% |
| !! | GATATGGCCTTGTGCTTTCT+GGG | + | chr1.2:6000066-6000085 | MS.gene24543:intron | 45.0% |
| !! | TTGGTTGGTAGTAAAGTGGG+GGG | - | chr1.2:5998400-5998419 | None:intergenic | 45.0% |
| !!! | AAAGTGGGGGGTGTTTTGAA+GGG | - | chr1.2:5998388-5998407 | None:intergenic | 45.0% |
| !!! | AGAGTTGGGGTTTTGGAAGA+GGG | + | chr1.2:5998830-5998849 | MS.gene24543:CDS | 45.0% |
| !!! | GCGTTTTCTAGTTGCATCAG+TGG | - | chr1.2:6002159-6002178 | None:intergenic | 45.0% |
| !!! | TAAAGTGGGGGGTGTTTTGA+AGG | - | chr1.2:5998389-5998408 | None:intergenic | 45.0% |
| !!! | TAGAGTTGGGGTTTTGGAAG+AGG | + | chr1.2:5998829-5998848 | MS.gene24543:CDS | 45.0% |
| AAGGAGATCACTGGCAAAGC+TGG | - | chr1.2:6000176-6000195 | None:intergenic | 50.0% | |
| AATTGCGCGGGAGAAGATTG+AGG | - | chr1.2:5998492-5998511 | None:intergenic | 50.0% | |
| ACCCACCAATTCCACTTCTG+TGG | + | chr1.2:5998525-5998544 | MS.gene24543:CDS | 50.0% | |
| ACCTCTCTATAAAGGGGCAG+TGG | - | chr1.2:6000393-6000412 | None:intergenic | 50.0% | |
| ACTAAGTGTACAAGCGGGTG+GGG | + | chr1.2:5999374-5999393 | MS.gene24543:intron | 50.0% | |
| AGACAGGAGACAACTCTACG+TGG | - | chr1.2:5999950-5999969 | None:intergenic | 50.0% | |
| AGCCATCTTACTCGTCCACT+TGG | + | chr1.2:6000327-6000346 | MS.gene24543:intron | 50.0% | |
| AGGAACTGTGCCTATGCTTC+CGG | + | chr1.2:6002001-6002020 | MS.gene24543:CDS | 50.0% | |
| AGGAGACAACTCTACGTGGA+TGG | - | chr1.2:5999946-5999965 | None:intergenic | 50.0% | |
| AGGTCACTCAGGAGAGATGA+GGG | + | chr1.2:6000687-6000706 | MS.gene24543:intron | 50.0% | |
| ATGGATGTGTCGCGATGAAG+AGG | + | chr1.2:5998651-5998670 | MS.gene24543:CDS | 50.0% | |
| ATGGTTGATTGTGACGGTGG+TGG | + | chr1.2:5998878-5998897 | MS.gene24543:CDS | 50.0% | |
| CGAACCCCATCACTCACAAA+AGG | - | chr1.2:5998944-5998963 | None:intergenic | 50.0% | |
| CTGAAGTGGTGTGAATTGCG+CGG | - | chr1.2:5998505-5998524 | None:intergenic | 50.0% | |
| CTGCTTGTTTCGTGTTGCGA+TGG | + | chr1.2:5998632-5998651 | MS.gene24543:CDS | 50.0% | |
| CTTACCAGCAAGGAGATCAC+TGG | - | chr1.2:6000185-6000204 | None:intergenic | 50.0% | |
| CTTACTCGTCCACTTGGCAT+AGG | + | chr1.2:6000333-6000352 | MS.gene24543:intron | 50.0% | |
| GGTTCGGAAGGGGATTGAAA+TGG | + | chr1.2:5998958-5998977 | MS.gene24543:CDS | 50.0% | |
| TAGGTCACTCAGGAGAGATG+AGG | + | chr1.2:6000686-6000705 | MS.gene24543:intron | 50.0% | |
| TGAAGTGGTGTGAATTGCGC+GGG | - | chr1.2:5998504-5998523 | None:intergenic | 50.0% | |
| TGCCAAGTGGACGAGTAAGA+TGG | - | chr1.2:6000332-6000351 | None:intergenic | 50.0% | |
| TGGATGGTTGATTGTGACGG+TGG | + | chr1.2:5998875-5998894 | MS.gene24543:CDS | 50.0% | |
| TGTGTCGCGATGAAGAGGAT+CGG | + | chr1.2:5998656-5998675 | MS.gene24543:CDS | 50.0% | |
| TTTGCCAGTGATCTCCTTGC+TGG | + | chr1.2:6000178-6000197 | MS.gene24543:CDS | 50.0% | |
| ! | AACTGGCAAGCATCGTGCAA+AGG | + | chr1.2:6001896-6001915 | MS.gene24543:CDS | 50.0% |
| ! | AGAATGGCTTCTAGCTGCTG+AGG | + | chr1.2:6001845-6001864 | MS.gene24543:intron | 50.0% |
| ! | CAGCAGTTCAGGTTATGACG+GGG | + | chr1.2:5999098-5999117 | MS.gene24543:CDS | 50.0% |
| ! | CTTCTAGCTGCTGAGGAACA+CGG | + | chr1.2:6001852-6001871 | MS.gene24543:CDS | 50.0% |
| ! | GCAGCAGTTCAGGTTATGAC+GGG | + | chr1.2:5999097-5999116 | MS.gene24543:CDS | 50.0% |
| ! | TACAAGCGGGTGGGGTATTT+AGG | + | chr1.2:5999382-5999401 | MS.gene24543:intron | 50.0% |
| ! | TGGAATTGGTGGGTCTGAAG+TGG | - | chr1.2:5998519-5998538 | None:intergenic | 50.0% |
| ! | TGGTGGTGATGCTAGAGTTG+GGG | + | chr1.2:5998817-5998836 | MS.gene24543:CDS | 50.0% |
| ! | TGTTCAACCACCGGAAGCAT+AGG | - | chr1.2:6002014-6002033 | None:intergenic | 50.0% |
| ! | TGTTTGACCACCGGAAGCAT+AGG | - | chr1.2:6001948-6001967 | None:intergenic | 50.0% |
| !! | GGATATGGCCTTGTGCTTTC+TGG | + | chr1.2:6000065-6000084 | MS.gene24543:intron | 50.0% |
| !! | GGGGATTGAAATGGGTTGTG+AGG | + | chr1.2:5998967-5998986 | MS.gene24543:CDS | 50.0% |
| AACTGTGCCTATGCTTCCGG+TGG | + | chr1.2:6001938-6001957 | MS.gene24543:CDS | 55.0% | |
| AGCTGCTGAGGAACACGGAT+TGG | + | chr1.2:6001857-6001876 | MS.gene24543:CDS | 55.0% | |
| CACCGTTGCGGTATTCGGTT+AGG | - | chr1.2:5998448-5998467 | None:intergenic | 55.0% | |
| GCCACTGCCCCTTTATAGAG+AGG | + | chr1.2:6000389-6000408 | MS.gene24543:intron | 55.0% | |
| GGGAATGCAGGACCTACAGA+AGG | - | chr1.2:6001463-6001482 | None:intergenic | 55.0% | |
| GGTAGCACCGTTGCGGTATT+CGG | - | chr1.2:5998453-5998472 | None:intergenic | 55.0% | |
| GTGGACGCCGTAAGTTTGTC+TGG | + | chr1.2:6002110-6002129 | MS.gene24543:CDS | 55.0% | |
| GTTGCATGCTGCAGCAGTTC+AGG | + | chr1.2:5999087-5999106 | MS.gene24543:CDS | 55.0% | |
| ! | GTGACGGTGGTGGTGAATCT+GGG | + | chr1.2:5998888-5998907 | MS.gene24543:CDS | 55.0% |
| ! | GTGAGTGATGGGGTTCGGAA+GGG | + | chr1.2:5998947-5998966 | MS.gene24543:CDS | 55.0% |
| ! | TGACGGTGGTGGTGAATCTG+GGG | + | chr1.2:5998889-5998908 | MS.gene24543:CDS | 55.0% |
| ! | TGAGTGATGGGGTTCGGAAG+GGG | + | chr1.2:5998948-5998967 | MS.gene24543:CDS | 55.0% |
| ! | TGTGACGGTGGTGGTGAATC+TGG | + | chr1.2:5998887-5998906 | MS.gene24543:CDS | 55.0% |
| ! | TGTGAGTGATGGGGTTCGGA+AGG | + | chr1.2:5998946-5998965 | MS.gene24543:CDS | 55.0% |
| !!! | GATCGGTGTTTTAGCGCCGT+TGG | + | chr1.2:5998673-5998692 | MS.gene24543:CDS | 55.0% |
| ! | GGTGGTGAATCTGGGGTTGG+TGG | + | chr1.2:5998896-5998915 | MS.gene24543:CDS | 60.0% |
| ! | GGTGGTGGTGAATCTGGGGT+TGG | + | chr1.2:5998893-5998912 | MS.gene24543:CDS | 60.0% |
| GCTGGGCAGCCTTCTTCCGT+TGG | + | chr1.2:6001007-6001026 | MS.gene24543:intron | 65.0% | |
| TTGAGGCGGGGATCGCGAGA+GGG | + | chr1.2:5999050-5999069 | MS.gene24543:CDS | 65.0% | |
| ! | TTTGAGGCGGGGATCGCGAG+AGG | + | chr1.2:5999049-5999068 | MS.gene24543:CDS | 65.0% |
| GGGGATCGCGAGAGGGGAGA+AGG | + | chr1.2:5999057-5999076 | MS.gene24543:CDS | 70.0% | |
| TGAGGCGGGGATCGCGAGAG+GGG | + | chr1.2:5999051-5999070 | MS.gene24543:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 5998371 | 6002283 | 5998371 | ID=MS.gene24543 |
| chr1.2 | mRNA | 5998371 | 6002283 | 5998371 | ID=MS.gene24543.t1;Parent=MS.gene24543 |
| chr1.2 | exon | 5998371 | 5999142 | 5998371 | ID=MS.gene24543.t1.exon1;Parent=MS.gene24543.t1 |
| chr1.2 | CDS | 5998371 | 5999142 | 5998371 | ID=cds.MS.gene24543.t1;Parent=MS.gene24543.t1 |
| chr1.2 | exon | 6000147 | 6000199 | 6000147 | ID=MS.gene24543.t1.exon2;Parent=MS.gene24543.t1 |
| chr1.2 | CDS | 6000147 | 6000199 | 6000147 | ID=cds.MS.gene24543.t1;Parent=MS.gene24543.t1 |
| chr1.2 | exon | 6001157 | 6001323 | 6001157 | ID=MS.gene24543.t1.exon3;Parent=MS.gene24543.t1 |
| chr1.2 | CDS | 6001157 | 6001323 | 6001157 | ID=cds.MS.gene24543.t1;Parent=MS.gene24543.t1 |
| chr1.2 | exon | 6001419 | 6001570 | 6001419 | ID=MS.gene24543.t1.exon4;Parent=MS.gene24543.t1 |
| chr1.2 | CDS | 6001419 | 6001570 | 6001419 | ID=cds.MS.gene24543.t1;Parent=MS.gene24543.t1 |
| chr1.2 | exon | 6001847 | 6002283 | 6001847 | ID=MS.gene24543.t1.exon5;Parent=MS.gene24543.t1 |
| chr1.2 | CDS | 6001847 | 6002283 | 6001847 | ID=cds.MS.gene24543.t1;Parent=MS.gene24543.t1 |
| Gene Sequence |
| Protein sequence |
