Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24685.t1 | AES82055.2 | 77.7 | 382 | 75 | 7 | 1 | 378 | 26 | 401 | 6.30E-169 | 603.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24685.t1 | Q9FVS1 | 45.2 | 345 | 175 | 8 | 33 | 373 | 13 | 347 | 5.7e-78 | 292.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24685.t1 | A0A072U447 | 77.7 | 382 | 75 | 7 | 1 | 378 | 2 | 377 | 4.6e-169 | 603.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24685 | MS.gene98671 | PPI |
| MS.gene24685 | MS.gene064044 | PPI |
| MS.gene24685 | MS.gene42889 | PPI |
| MS.gene24685 | MS.gene009311 | PPI |
| MS.gene24685 | MS.gene005636 | PPI |
| MS.gene95088 | MS.gene24685 | PPI |
| MS.gene24685 | MS.gene024343 | PPI |
| MS.gene24685 | MS.gene75065 | PPI |
| MS.gene24685 | MS.gene59977 | PPI |
| MS.gene24685 | MS.gene05311 | PPI |
| MS.gene24685 | MS.gene98673 | PPI |
| MS.gene98670 | MS.gene24685 | PPI |
| MS.gene24685 | MS.gene53925 | PPI |
| MS.gene24685 | MS.gene024341 | PPI |
| MS.gene24685 | MS.gene47120 | PPI |
| MS.gene24685 | MS.gene42887 | PPI |
| MS.gene24685 | MS.gene012753 | PPI |
| MS.gene24685 | MS.gene42893 | PPI |
| MS.gene24685 | MS.gene67877 | PPI |
| MS.gene071039 | MS.gene24685 | PPI |
| MS.gene24685 | MS.gene42891 | PPI |
| MS.gene24685 | MS.gene43440 | PPI |
| MS.gene52540 | MS.gene24685 | PPI |
| MS.gene03004 | MS.gene24685 | PPI |
| MS.gene75067 | MS.gene24685 | PPI |
| MS.gene24685 | MS.gene071037 | PPI |
| MS.gene24685 | MS.gene024275 | PPI |
| MS.gene24685 | MS.gene33922 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24685.t1 | MTR_7g104790 | 77.989 | 368 | 71 | 7 | 15 | 378 | 40 | 401 | 0.0 | 575 |
| MS.gene24685.t1 | MTR_7g104790 | 77.989 | 368 | 71 | 7 | 15 | 378 | 16 | 377 | 0.0 | 573 |
| MS.gene24685.t1 | MTR_7g104785 | 76.243 | 362 | 75 | 5 | 15 | 375 | 17 | 368 | 0.0 | 538 |
| MS.gene24685.t1 | MTR_1g059840 | 61.214 | 379 | 139 | 5 | 1 | 376 | 1 | 374 | 2.57e-163 | 462 |
| MS.gene24685.t1 | MTR_7g104760 | 81.944 | 144 | 9 | 1 | 214 | 357 | 14 | 140 | 1.25e-79 | 241 |
| MS.gene24685.t1 | MTR_2g020080 | 29.297 | 256 | 155 | 10 | 79 | 321 | 3 | 245 | 2.06e-16 | 79.3 |
| MS.gene24685.t1 | MTR_3g114970 | 25.672 | 335 | 183 | 16 | 33 | 328 | 5 | 312 | 3.56e-13 | 70.5 |
| MS.gene24685.t1 | MTR_2g034630 | 26.316 | 266 | 129 | 11 | 115 | 370 | 143 | 351 | 1.17e-12 | 68.9 |
| MS.gene24685.t1 | MTR_2g015760 | 33.784 | 148 | 85 | 6 | 31 | 171 | 13 | 154 | 1.83e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24685.t1 | AT1G57790 | 45.217 | 345 | 175 | 8 | 33 | 373 | 13 | 347 | 1.24e-92 | 281 |
| MS.gene24685.t1 | AT3G56470 | 39.884 | 346 | 185 | 9 | 31 | 371 | 27 | 354 | 9.07e-78 | 244 |
| MS.gene24685.t1 | AT4G00893 | 38.504 | 361 | 209 | 8 | 18 | 373 | 30 | 382 | 1.43e-72 | 231 |
| MS.gene24685.t1 | AT4G10660 | 41.275 | 298 | 163 | 7 | 61 | 353 | 3 | 293 | 3.00e-64 | 207 |
| MS.gene24685.t1 | AT4G12370 | 39.739 | 307 | 170 | 9 | 80 | 378 | 1 | 300 | 1.66e-62 | 202 |
| MS.gene24685.t1 | AT1G49360 | 33.676 | 389 | 221 | 14 | 10 | 375 | 64 | 438 | 7.85e-49 | 171 |
| MS.gene24685.t1 | AT1G49360 | 33.676 | 389 | 221 | 14 | 10 | 375 | 87 | 461 | 8.66e-49 | 172 |
| MS.gene24685.t1 | AT1G49360 | 34.986 | 363 | 201 | 13 | 36 | 375 | 8 | 358 | 1.17e-48 | 169 |
| MS.gene24685.t1 | AT1G49360 | 34.986 | 363 | 201 | 13 | 36 | 375 | 8 | 358 | 1.17e-48 | 169 |
| MS.gene24685.t1 | AT1G49360 | 34.986 | 363 | 201 | 13 | 36 | 375 | 8 | 358 | 1.17e-48 | 169 |
| MS.gene24685.t1 | AT4G10695 | 41.538 | 195 | 110 | 3 | 45 | 239 | 1 | 191 | 6.21e-43 | 149 |
| MS.gene24685.t1 | AT4G10695 | 41.538 | 195 | 110 | 3 | 45 | 239 | 1 | 191 | 6.21e-43 | 149 |
| MS.gene24685.t1 | AT3G18720 | 33.660 | 306 | 181 | 10 | 35 | 327 | 51 | 347 | 9.21e-43 | 153 |
| MS.gene24685.t1 | AT4G12382 | 43.750 | 128 | 70 | 1 | 32 | 159 | 9 | 134 | 2.04e-32 | 119 |
| MS.gene24685.t1 | AT4G12382 | 43.750 | 128 | 70 | 1 | 32 | 159 | 9 | 134 | 2.04e-32 | 119 |
| MS.gene24685.t1 | AT4G10700 | 42.742 | 124 | 58 | 3 | 257 | 371 | 119 | 238 | 2.25e-21 | 92.4 |
| MS.gene24685.t1 | AT4G10700 | 43.182 | 88 | 48 | 1 | 61 | 148 | 3 | 88 | 2.56e-18 | 84.0 |
| MS.gene24685.t1 | AT2G44735 | 34.395 | 157 | 87 | 5 | 134 | 287 | 109 | 252 | 1.13e-15 | 78.2 |
| MS.gene24685.t1 | AT4G22660 | 32.192 | 146 | 80 | 6 | 32 | 165 | 9 | 147 | 1.06e-12 | 69.3 |
| MS.gene24685.t1 | AT5G66830 | 24.107 | 336 | 197 | 17 | 33 | 328 | 20 | 337 | 5.79e-11 | 63.9 |
| MS.gene24685.t1 | AT4G22035 | 29.921 | 127 | 82 | 3 | 32 | 154 | 12 | 135 | 5.88e-11 | 62.8 |
Find 81 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTGGAATTTCCCTTTA+AGG | 0.142001 | 7.3:+9747812 | None:intergenic |
| AGATCTAGCTTGAAAATTAT+TGG | 0.205921 | 7.3:+9747409 | None:intergenic |
| TTCCCTAAAGTCCGTTTCTA+TGG | 0.238841 | 7.3:-9747271 | MS.gene24685:CDS |
| TTCATCAATCGCACGATGTC+GGG | 0.268005 | 7.3:-9748600 | None:intergenic |
| TTTCCATAGAAACGGACTTT+AGG | 0.268523 | 7.3:+9747268 | None:intergenic |
| ATCACACTTCCAAGCCTTAA+AGG | 0.269832 | 7.3:-9747826 | MS.gene24685:CDS |
| GACCTATTCCGTTGAGTTGC+CGG | 0.312907 | 7.3:-9747959 | MS.gene24685:CDS |
| ATCCATCCAGCGAAGTCTTT+TGG | 0.314581 | 7.3:+9747142 | None:intergenic |
| AGAATTGTTCTTGTCTCGTT+TGG | 0.335751 | 7.3:-9748130 | MS.gene24685:CDS |
| GATCTAGCTTGAAAATTATT+GGG | 0.338308 | 7.3:+9747410 | None:intergenic |
| CTCTATCATAAAACTCTCTT+TGG | 0.347384 | 7.3:+9747477 | None:intergenic |
| TTCCATAGAAACGGACTTTA+GGG | 0.349581 | 7.3:+9747269 | None:intergenic |
| AGAACTCTCTACTAGGCATT+TGG | 0.354406 | 7.3:+9747516 | None:intergenic |
| TCTTGTCTCGTTTGGATGTT+GGG | 0.359047 | 7.3:-9748122 | MS.gene24685:CDS |
| CACAAGAAAAGGCAGCAATT+TGG | 0.361791 | 7.3:+9747797 | None:intergenic |
| TGTTTATGGGCTGCCGCCAC+TGG | 0.381404 | 7.3:+9747884 | None:intergenic |
| ACACTCCAAGTATATTCAAT+TGG | 0.383118 | 7.3:+9747556 | None:intergenic |
| CAAGCTAGATCTGACACTAA+TGG | 0.386785 | 7.3:-9747398 | MS.gene24685:CDS |
| GCTTAGTGGGATAATATCTA+TGG | 0.399107 | 7.3:+9747218 | None:intergenic |
| ACTATAAACGTATGTTATCA+TGG | 0.409741 | 7.3:-9747712 | MS.gene24685:CDS |
| TTGACCCAATTGAATATACT+TGG | 0.417142 | 7.3:-9747561 | MS.gene24685:CDS |
| TTCCGTTGAGTTGCCGGAGT+TGG | 0.418573 | 7.3:-9747953 | MS.gene24685:CDS |
| TGGAATTTCCCTTTAAGGCT+TGG | 0.422941 | 7.3:+9747817 | None:intergenic |
| GAACTCTCTACTAGGCATTT+GGG | 0.427224 | 7.3:+9747517 | None:intergenic |
| TTCTTGTCTCGTTTGGATGT+TGG | 0.428497 | 7.3:-9748123 | MS.gene24685:CDS |
| TCGCAATAGAACTCTCTACT+AGG | 0.437041 | 7.3:+9747509 | None:intergenic |
| CATAAGTTCTCAAAAGCATC+TGG | 0.443325 | 7.3:+9747175 | None:intergenic |
| TCACACTTCCAAGCCTTAAA+GGG | 0.458726 | 7.3:-9747825 | MS.gene24685:CDS |
| CTCCGGCAACTCAACGGAAT+AGG | 0.459249 | 7.3:+9747957 | None:intergenic |
| AAAGAGGTGAGAACACTAGA+TGG | 0.470190 | 7.3:-9747370 | MS.gene24685:CDS |
| AACAATTCTAAGAGTTCCAC+AGG | 0.473018 | 7.3:+9748144 | None:intergenic |
| GTTATCATGGGGCAAAAGAA+TGG | 0.474220 | 7.3:-9747699 | MS.gene24685:CDS |
| CATTCTAGGTCTTATGTCAC+TGG | 0.479562 | 7.3:-9747316 | MS.gene24685:CDS |
| AATACATAAGCCAAGGTGAT+TGG | 0.482476 | 7.3:+9748031 | None:intergenic |
| TGATGTTGGAGCACAAGAAA+AGG | 0.485677 | 7.3:+9747786 | None:intergenic |
| GTGATCAGATCACTAGTAAA+GGG | 0.487707 | 7.3:+9747844 | None:intergenic |
| CACTCCAAGTATATTCAATT+GGG | 0.492084 | 7.3:+9747557 | None:intergenic |
| CGTGTTAGCTATACAAAAGA+TGG | 0.492384 | 7.3:-9747922 | MS.gene24685:CDS |
| GAATAGGTCTTACGCTGCAC+AGG | 0.493022 | 7.3:+9747973 | None:intergenic |
| CAAGTCAAGACACTGCTTAG+TGG | 0.500747 | 7.3:+9747204 | None:intergenic |
| TAAGCCACACAGGTTGCCTA+GGG | 0.505306 | 7.3:-9747588 | MS.gene24685:CDS |
| TGTGATCAGATCACTAGTAA+AGG | 0.505810 | 7.3:+9747843 | None:intergenic |
| CTATAAACGTATGTTATCAT+GGG | 0.510040 | 7.3:-9747711 | MS.gene24685:CDS |
| TTAAGCCACACAGGTTGCCT+AGG | 0.512634 | 7.3:-9747589 | MS.gene24685:CDS |
| CTTCAGCTGTTTGCAAGAGA+TGG | 0.513153 | 7.3:-9748086 | MS.gene24685:CDS |
| CACTAAGCAGTGTCTTGACT+TGG | 0.516461 | 7.3:-9747203 | MS.gene24685:CDS |
| TAAGAGTTCCACAGGGAGAT+CGG | 0.527538 | 7.3:+9748152 | None:intergenic |
| TGTTTGCAAGAGATGGTGTT+CGG | 0.538924 | 7.3:-9748079 | MS.gene24685:CDS |
| AAGTCAAGACACTGCTTAGT+GGG | 0.540315 | 7.3:+9747205 | None:intergenic |
| GTTGAGTTGCCGGAGTTGGA+TGG | 0.545335 | 7.3:-9747949 | MS.gene24685:CDS |
| CACCAAAAGACTTCGCTGGA+TGG | 0.557255 | 7.3:-9747144 | MS.gene24685:CDS |
| TGCAACGCTTTCCATAGAAA+CGG | 0.557633 | 7.3:+9747260 | None:intergenic |
| TCATCAATCGCACGATGTCG+GGG | 0.560745 | 7.3:-9748599 | None:intergenic |
| GACACTAATGGAATGGAAAG+AGG | 0.564517 | 7.3:-9747386 | MS.gene24685:CDS |
| GAACCACCAAAAGACTTCGC+TGG | 0.565628 | 7.3:-9747148 | MS.gene24685:CDS |
| TCTACTAGGCATTTGGGCGG+AGG | 0.571620 | 7.3:+9747523 | None:intergenic |
| CAATAGAAGAGCTGCTGCTG+AGG | 0.574535 | 7.3:-9748208 | MS.gene24685:CDS |
| TAGATCTGACACTAATGGAA+TGG | 0.579771 | 7.3:-9747393 | MS.gene24685:CDS |
| CGATGTCGGGGAATAGAAGA+AGG | 0.579884 | 7.3:-9748587 | MS.gene24685:CDS |
| ATCCAACTCCGGCAACTCAA+CGG | 0.581410 | 7.3:+9747951 | None:intergenic |
| TTAGCTATACAAAAGATGGT+TGG | 0.586579 | 7.3:-9747918 | MS.gene24685:CDS |
| TCTGGGAAATACATAAGCCA+AGG | 0.590834 | 7.3:+9748024 | None:intergenic |
| ATAACACAGTCAGTTGATGT+TGG | 0.598284 | 7.3:+9747772 | None:intergenic |
| CAATTGGGTCAAACACCCCT+AGG | 0.600359 | 7.3:+9747572 | None:intergenic |
| GTCGACTACACGTACAGAAG+TGG | 0.602304 | 7.3:+9748053 | None:intergenic |
| CTTGTCTCGTTTGGATGTTG+GGG | 0.612760 | 7.3:-9748121 | MS.gene24685:CDS |
| GGTTATTGCTAAACCAGTGG+CGG | 0.617651 | 7.3:-9747897 | MS.gene24685:CDS |
| ACACGACATCCATCCAACTC+CGG | 0.622138 | 7.3:+9747940 | None:intergenic |
| ACAATTTGGAGCTGCAAACG+TGG | 0.624516 | 7.3:-9748176 | MS.gene24685:CDS |
| GTTGGTTATTGCTAAACCAG+TGG | 0.638727 | 7.3:-9747900 | MS.gene24685:CDS |
| TATAAACGTATGTTATCATG+GGG | 0.645070 | 7.3:-9747710 | MS.gene24685:CDS |
| TTTGTAATTCATATATGTTG+TGG | 0.647853 | 7.3:-9747439 | MS.gene24685:CDS |
| AATAGGTCTTACGCTGCACA+GGG | 0.650966 | 7.3:+9747974 | None:intergenic |
| TGTTTATCGTAACAACAGCT+CGG | 0.656147 | 7.3:-9747671 | MS.gene24685:CDS |
| CTCTCTACTAGGCATTTGGG+CGG | 0.676938 | 7.3:+9747520 | None:intergenic |
| AATTCATATATGTTGTGGTG+AGG | 0.682117 | 7.3:-9747434 | MS.gene24685:CDS |
| AACGTGGTCCGATCTCCCTG+TGG | 0.695767 | 7.3:-9748160 | MS.gene24685:CDS |
| GTGTAGTCGACCAATCACCT+TGG | 0.730923 | 7.3:-9748041 | MS.gene24685:CDS |
| AAGCCACACAGGTTGCCTAG+GGG | 0.732552 | 7.3:-9747587 | MS.gene24685:CDS |
| ACACCCCTAGGCAACCTGTG+TGG | 0.745993 | 7.3:+9747584 | None:intergenic |
| ACAATTCTAAGAGTTCCACA+GGG | 0.769621 | 7.3:+9748145 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAGAAAAATATTGTTTA+TGG | + | chr7.3:9747856-9747875 | None:intergenic | 15.0% |
| !! | AAGAGAAAAATATTGTTTAT+GGG | + | chr7.3:9747855-9747874 | None:intergenic | 15.0% |
| !!! | TGTGTTATAGTATTAATTTT+TGG | - | chr7.3:9747966-9747985 | MS.gene24685:CDS | 15.0% |
| !! | TATAATATTTCAATGCTCAA+CGG | + | chr7.3:9747258-9747277 | None:intergenic | 20.0% |
| !! | TTTGTAATTCATATATGTTG+TGG | - | chr7.3:9748284-9748303 | MS.gene24685:intron | 20.0% |
| !!! | GAAATATTATATTTGGCTTA+GGG | - | chr7.3:9747267-9747286 | MS.gene24685:CDS | 20.0% |
| !!! | GAGCATTGAAATATTATATT+TGG | - | chr7.3:9747260-9747279 | MS.gene24685:CDS | 20.0% |
| !!! | TGAAATATTATATTTGGCTT+AGG | - | chr7.3:9747266-9747285 | MS.gene24685:CDS | 20.0% |
| ! | ACTATAAACGTATGTTATCA+TGG | - | chr7.3:9748011-9748030 | MS.gene24685:CDS | 25.0% |
| ! | CTATAAACGTATGTTATCAT+GGG | - | chr7.3:9748012-9748031 | MS.gene24685:CDS | 25.0% |
| ! | TATAAACGTATGTTATCATG+GGG | - | chr7.3:9748013-9748032 | MS.gene24685:CDS | 25.0% |
| !! | AGATCTAGCTTGAAAATTAT+TGG | + | chr7.3:9748317-9748336 | None:intergenic | 25.0% |
| !! | CAAAACAATTACTGTTTTCT+GGG | + | chr7.3:9747719-9747738 | None:intergenic | 25.0% |
| !! | GATCTAGCTTGAAAATTATT+GGG | + | chr7.3:9748316-9748335 | None:intergenic | 25.0% |
| !! | TCAAAACAATTACTGTTTTC+TGG | + | chr7.3:9747720-9747739 | None:intergenic | 25.0% |
| !!! | AGTTTTATGATAGAGTACAA+AGG | - | chr7.3:9748254-9748273 | MS.gene24685:intron | 25.0% |
| !!! | GTATTAATTTTTGGACATCT+TGG | - | chr7.3:9747975-9747994 | MS.gene24685:CDS | 25.0% |
| AACAAACGAATTTAGTTAGC+AGG | + | chr7.3:9747430-9747449 | None:intergenic | 30.0% | |
| AATTCATATATGTTGTGGTG+AGG | - | chr7.3:9748289-9748308 | MS.gene24685:intron | 30.0% | |
| ACACTCCAAGTATATTCAAT+TGG | + | chr7.3:9748170-9748189 | None:intergenic | 30.0% | |
| CACTCCAAGTATATTCAATT+GGG | + | chr7.3:9748169-9748188 | None:intergenic | 30.0% | |
| CTCTATCATAAAACTCTCTT+TGG | + | chr7.3:9748249-9748268 | None:intergenic | 30.0% | |
| TGAGGTAAAAAGTGACAATT+TGG | - | chr7.3:9747533-9747552 | MS.gene24685:CDS | 30.0% | |
| TTAGCTATACAAAAGATGGT+TGG | - | chr7.3:9747805-9747824 | MS.gene24685:CDS | 30.0% | |
| TTGACCCAATTGAATATACT+TGG | - | chr7.3:9748162-9748181 | MS.gene24685:CDS | 30.0% | |
| ! | CAATTTGGAATTTCCCTTTA+AGG | + | chr7.3:9747914-9747933 | None:intergenic | 30.0% |
| ! | GATAAGCTTGTCTTTTCTAA+TGG | - | chr7.3:9748098-9748117 | MS.gene24685:CDS | 30.0% |
| ! | TTTTATTGTTTAAGCCACAC+AGG | - | chr7.3:9748125-9748144 | MS.gene24685:CDS | 30.0% |
| !!! | GTTTTTTGTCATCTCATTCT+AGG | - | chr7.3:9748393-9748412 | MS.gene24685:intron | 30.0% |
| AATACATAAGCCAAGGTGAT+TGG | + | chr7.3:9747695-9747714 | None:intergenic | 35.0% | |
| AGAATTGTTCTTGTCTCGTT+TGG | - | chr7.3:9747593-9747612 | MS.gene24685:CDS | 35.0% | |
| CGTGTTAGCTATACAAAAGA+TGG | - | chr7.3:9747801-9747820 | MS.gene24685:CDS | 35.0% | |
| GAGTTCTATTGCGAAAAACT+CGG | - | chr7.3:9748223-9748242 | MS.gene24685:intron | 35.0% | |
| GCTTAGTGGGATAATATCTA+TGG | + | chr7.3:9748508-9748527 | None:intergenic | 35.0% | |
| GTGATCAGATCACTAGTAAA+GGG | + | chr7.3:9747882-9747901 | None:intergenic | 35.0% | |
| TAGATCTGACACTAATGGAA+TGG | - | chr7.3:9748330-9748349 | MS.gene24685:intron | 35.0% | |
| TATCGAGGGAAAAAACATTG+AGG | + | chr7.3:9747222-9747241 | None:intergenic | 35.0% | |
| TGTGATCAGATCACTAGTAA+AGG | + | chr7.3:9747883-9747902 | None:intergenic | 35.0% | |
| TGTTTATCGTAACAACAGCT+CGG | - | chr7.3:9748052-9748071 | MS.gene24685:CDS | 35.0% | |
| ! | AACAATTCTAAGAGTTCCAC+AGG | + | chr7.3:9747582-9747601 | None:intergenic | 35.0% |
| ! | ACAATTCTAAGAGTTCCACA+GGG | + | chr7.3:9747581-9747600 | None:intergenic | 35.0% |
| ! | ATAACACAGTCAGTTGATGT+TGG | + | chr7.3:9747954-9747973 | None:intergenic | 35.0% |
| ! | TTCCATAGAAACGGACTTTA+GGG | + | chr7.3:9748457-9748476 | None:intergenic | 35.0% |
| ! | TTTCCATAGAAACGGACTTT+AGG | + | chr7.3:9748458-9748477 | None:intergenic | 35.0% |
| !! | CAGATGCTTTTGAGAACTTA+TGG | - | chr7.3:9748549-9748568 | MS.gene24685:intron | 35.0% |
| !! | CATAAGTTCTCAAAAGCATC+TGG | + | chr7.3:9748551-9748570 | None:intergenic | 35.0% |
| AAAGAGGTGAGAACACTAGA+TGG | - | chr7.3:9748353-9748372 | MS.gene24685:intron | 40.0% | |
| AAGTCAAGACACTGCTTAGT+GGG | + | chr7.3:9748521-9748540 | None:intergenic | 40.0% | |
| AGAACTCTCTACTAGGCATT+TGG | + | chr7.3:9748210-9748229 | None:intergenic | 40.0% | |
| ATCACACTTCCAAGCCTTAA+AGG | - | chr7.3:9747897-9747916 | MS.gene24685:CDS | 40.0% | |
| CAAGCTAGATCTGACACTAA+TGG | - | chr7.3:9748325-9748344 | MS.gene24685:intron | 40.0% | |
| CACAAGAAAAGGCAGCAATT+TGG | + | chr7.3:9747929-9747948 | None:intergenic | 40.0% | |
| GAACTCTCTACTAGGCATTT+GGG | + | chr7.3:9748209-9748228 | None:intergenic | 40.0% | |
| GACACTAATGGAATGGAAAG+AGG | - | chr7.3:9748337-9748356 | MS.gene24685:intron | 40.0% | |
| GATGATTACTGCTGCATGTA+TGG | - | chr7.3:9747320-9747339 | MS.gene24685:CDS | 40.0% | |
| GTTATCATGGGGCAAAAGAA+TGG | - | chr7.3:9748024-9748043 | MS.gene24685:CDS | 40.0% | |
| GTTCAAGTACTCGATATCGA+GGG | + | chr7.3:9747236-9747255 | None:intergenic | 40.0% | |
| GTTGGTTATTGCTAAACCAG+TGG | - | chr7.3:9747823-9747842 | MS.gene24685:CDS | 40.0% | |
| TCACACTTCCAAGCCTTAAA+GGG | - | chr7.3:9747898-9747917 | MS.gene24685:CDS | 40.0% | |
| TCGCAATAGAACTCTCTACT+AGG | + | chr7.3:9748217-9748236 | None:intergenic | 40.0% | |
| TCTGGGAAATACATAAGCCA+AGG | + | chr7.3:9747702-9747721 | None:intergenic | 40.0% | |
| TCTTGTCTCGTTTGGATGTT+GGG | - | chr7.3:9747601-9747620 | MS.gene24685:CDS | 40.0% | |
| TGATGTTGGAGCACAAGAAA+AGG | + | chr7.3:9747940-9747959 | None:intergenic | 40.0% | |
| TGCAACGCTTTCCATAGAAA+CGG | + | chr7.3:9748466-9748485 | None:intergenic | 40.0% | |
| TGTTTGCAAGAGATGGTGTT+CGG | - | chr7.3:9747644-9747663 | MS.gene24685:CDS | 40.0% | |
| TTCCCTAAAGTCCGTTTCTA+TGG | - | chr7.3:9748452-9748471 | MS.gene24685:intron | 40.0% | |
| TTCTTGTCTCGTTTGGATGT+TGG | - | chr7.3:9747600-9747619 | MS.gene24685:CDS | 40.0% | |
| ! | CATTCTAGGTCTTATGTCAC+TGG | - | chr7.3:9748407-9748426 | MS.gene24685:intron | 40.0% |
| !! | TGGAATTTCCCTTTAAGGCT+TGG | + | chr7.3:9747909-9747928 | None:intergenic | 40.0% |
| AATAGGTCTTACGCTGCACA+GGG | + | chr7.3:9747752-9747771 | None:intergenic | 45.0% | |
| CAAGTCAAGACACTGCTTAG+TGG | + | chr7.3:9748522-9748541 | None:intergenic | 45.0% | |
| CACTAAGCAGTGTCTTGACT+TGG | - | chr7.3:9748520-9748539 | MS.gene24685:intron | 45.0% | |
| CTTCAGCTGTTTGCAAGAGA+TGG | - | chr7.3:9747637-9747656 | MS.gene24685:CDS | 45.0% | |
| CTTGTCTCGTTTGGATGTTG+GGG | - | chr7.3:9747602-9747621 | MS.gene24685:CDS | 45.0% | |
| GGTTATTGCTAAACCAGTGG+CGG | - | chr7.3:9747826-9747845 | MS.gene24685:CDS | 45.0% | |
| GGTTCAAGTACTCGATATCG+AGG | + | chr7.3:9747237-9747256 | None:intergenic | 45.0% | |
| TAAGAGTTCCACAGGGAGAT+CGG | + | chr7.3:9747574-9747593 | None:intergenic | 45.0% | |
| ! | ACAATTTGGAGCTGCAAACG+TGG | - | chr7.3:9747547-9747566 | MS.gene24685:CDS | 45.0% |
| ! | ATCCATCCAGCGAAGTCTTT+TGG | + | chr7.3:9748584-9748603 | None:intergenic | 45.0% |
| !! | TTGAATTATAATTATAATTT+AGG | + | chr7.3:9747192-9747211 | None:intergenic | 5.0% |
| ACACGACATCCATCCAACTC+CGG | + | chr7.3:9747786-9747805 | None:intergenic | 50.0% | |
| ATCCAACTCCGGCAACTCAA+CGG | + | chr7.3:9747775-9747794 | None:intergenic | 50.0% | |
| CAATAGAAGAGCTGCTGCTG+AGG | - | chr7.3:9747515-9747534 | MS.gene24685:CDS | 50.0% | |
| CAATTGGGTCAAACACCCCT+AGG | + | chr7.3:9748154-9748173 | None:intergenic | 50.0% | |
| CACCAAAAGACTTCGCTGGA+TGG | - | chr7.3:9748579-9748598 | MS.gene24685:CDS | 50.0% | |
| CTCTCTACTAGGCATTTGGG+CGG | + | chr7.3:9748206-9748225 | None:intergenic | 50.0% | |
| GAACCACCAAAAGACTTCGC+TGG | - | chr7.3:9748575-9748594 | MS.gene24685:CDS | 50.0% | |
| GAATAGGTCTTACGCTGCAC+AGG | + | chr7.3:9747753-9747772 | None:intergenic | 50.0% | |
| GTCGACTACACGTACAGAAG+TGG | + | chr7.3:9747673-9747692 | None:intergenic | 50.0% | |
| GTGTAGTCGACCAATCACCT+TGG | - | chr7.3:9747682-9747701 | MS.gene24685:CDS | 50.0% | |
| TAAGCCACACAGGTTGCCTA+GGG | - | chr7.3:9748135-9748154 | MS.gene24685:CDS | 50.0% | |
| TTAAGCCACACAGGTTGCCT+AGG | - | chr7.3:9748134-9748153 | MS.gene24685:CDS | 50.0% | |
| ! | CATCCAGCGAAGTCTTTTGG+TGG | + | chr7.3:9748581-9748600 | None:intergenic | 50.0% |
| ! | GACCTATTCCGTTGAGTTGC+CGG | - | chr7.3:9747764-9747783 | MS.gene24685:CDS | 50.0% |
| AAGCCACACAGGTTGCCTAG+GGG | - | chr7.3:9748136-9748155 | MS.gene24685:CDS | 55.0% | |
| CTCCGGCAACTCAACGGAAT+AGG | + | chr7.3:9747769-9747788 | None:intergenic | 55.0% | |
| TCTACTAGGCATTTGGGCGG+AGG | + | chr7.3:9748203-9748222 | None:intergenic | 55.0% | |
| ! | GTTGAGTTGCCGGAGTTGGA+TGG | - | chr7.3:9747774-9747793 | MS.gene24685:CDS | 55.0% |
| ! | TTCCGTTGAGTTGCCGGAGT+TGG | - | chr7.3:9747770-9747789 | MS.gene24685:CDS | 55.0% |
| AACGTGGTCCGATCTCCCTG+TGG | - | chr7.3:9747563-9747582 | MS.gene24685:CDS | 60.0% | |
| ACACCCCTAGGCAACCTGTG+TGG | + | chr7.3:9748142-9748161 | None:intergenic | 60.0% | |
| ! | TGTTTATGGGCTGCCGCCAC+TGG | + | chr7.3:9747842-9747861 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 9747138 | 9748607 | 9747138 | ID=MS.gene24685 |
| chr7.3 | mRNA | 9747138 | 9748607 | 9747138 | ID=MS.gene24685.t1;Parent=MS.gene24685 |
| chr7.3 | exon | 9748573 | 9748607 | 9748573 | ID=MS.gene24685.t1.exon1;Parent=MS.gene24685.t1 |
| chr7.3 | CDS | 9748573 | 9748607 | 9748573 | ID=cds.MS.gene24685.t1;Parent=MS.gene24685.t1 |
| chr7.3 | exon | 9747138 | 9748239 | 9747138 | ID=MS.gene24685.t1.exon2;Parent=MS.gene24685.t1 |
| chr7.3 | CDS | 9747138 | 9748239 | 9747138 | ID=cds.MS.gene24685.t1;Parent=MS.gene24685.t1 |
| Gene Sequence |
| Protein sequence |
