Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27903.t1 | XP_024629668.1 | 89.5 | 812 | 84 | 1 | 1 | 812 | 1 | 811 | 0.00E+00 | 1241.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27903.t1 | A0A396GNM2 | 83.6 | 837 | 112 | 1 | 1 | 812 | 1 | 837 | 0.0e+00 | 1232.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049272 | MS.gene27903 | 0.800099 | 1.69E-48 | -1.69E-46 |
| MS.gene049825 | MS.gene27903 | 0.803515 | 3.36E-49 | -1.69E-46 |
| MS.gene049873 | MS.gene27903 | 0.805358 | 1.39E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene27903 | 0.869252 | 3.56E-66 | -1.69E-46 |
| MS.gene050787 | MS.gene27903 | 0.805073 | 1.59E-49 | -1.69E-46 |
| MS.gene050799 | MS.gene27903 | 0.800309 | 1.53E-48 | -1.69E-46 |
| MS.gene050844 | MS.gene27903 | 0.834687 | 2.59E-56 | -1.69E-46 |
| MS.gene051957 | MS.gene27903 | 0.809548 | 1.79E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene27903 | 0.801409 | 9.13E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene27903 | 0.80475 | 1.86E-49 | -1.69E-46 |
| MS.gene052208 | MS.gene27903 | 0.810274 | 1.25E-50 | -1.69E-46 |
| MS.gene052358 | MS.gene27903 | -0.815487 | 9.02E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene27903 | 0.813184 | 2.91E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene27903 | 0.808455 | 3.07E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene27903 | 0.825092 | 5.66E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene27903 | 0.840575 | 8.00E-58 | -1.69E-46 |
| MS.gene052896 | MS.gene27903 | 0.812624 | 3.86E-51 | -1.69E-46 |
| MS.gene053221 | MS.gene27903 | 0.806478 | 8.07E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene27903 | 0.806497 | 7.99E-50 | -1.69E-46 |
| MS.gene053900 | MS.gene27903 | 0.81136 | 7.28E-51 | -1.69E-46 |
| MS.gene053966 | MS.gene27903 | 0.802595 | 5.21E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene27903 | 0.810637 | 1.04E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene27903 | 0.804471 | 2.13E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene27903 | 0.809365 | 1.96E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene27903 | 0.819394 | 1.19E-52 | -1.69E-46 |
| MS.gene055363 | MS.gene27903 | 0.808624 | 2.83E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene27903 | 0.828638 | 8.04E-55 | -1.69E-46 |
| MS.gene05604 | MS.gene27903 | 0.811907 | 5.54E-51 | -1.69E-46 |
| MS.gene056173 | MS.gene27903 | 0.801379 | 9.26E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene27903 | 0.853403 | 2.45E-61 | -1.69E-46 |
| MS.gene057915 | MS.gene27903 | 0.80089 | 1.17E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene27903 | 0.850151 | 2.04E-60 | -1.69E-46 |
| MS.gene058636 | MS.gene27903 | 0.809848 | 1.54E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene27903 | 0.87261 | 2.79E-67 | -1.69E-46 |
| MS.gene058979 | MS.gene27903 | 0.821075 | 4.90E-53 | -1.69E-46 |
| MS.gene059789 | MS.gene27903 | 0.816457 | 5.48E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene27903 | 0.810085 | 1.37E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene27903 | 0.837358 | 5.45E-57 | -1.69E-46 |
| MS.gene060781 | MS.gene27903 | 0.805956 | 1.04E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene27903 | -0.809259 | 2.07E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27903.t1 | MTR_0009s0330 | 33.516 | 182 | 62 | 2 | 461 | 642 | 54 | 176 | 8.50e-29 | 114 |
| MS.gene27903.t1 | MTR_0031s0130 | 37.714 | 175 | 86 | 8 | 602 | 767 | 26 | 186 | 1.05e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 181 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCCAACCACCGACTTAA+AGG | 0.208074 | 4.1:-12279220 | None:intergenic |
| AAGATGTGATAACAGATATT+AGG | 0.229248 | 4.1:+12279696 | MS.gene27903:CDS |
| CGATCTCTCAAATTTCTCTT+TGG | 0.266239 | 4.1:-12273878 | None:intergenic |
| TCAACTTCAAATTCATTTGA+TGG | 0.278093 | 4.1:-12274692 | None:intergenic |
| TGATAATCCATCAAATGATT+TGG | 0.297456 | 4.1:+12275062 | MS.gene27903:CDS |
| CATTCTCTGCCTCCACCCTT+TGG | 0.298562 | 4.1:-12279329 | None:intergenic |
| TGATAATATATCAAATGAAT+TGG | 0.317818 | 4.1:+12273588 | MS.gene27903:CDS |
| CAATCATATATGCAGGGTTT+TGG | 0.318781 | 4.1:+12279243 | MS.gene27903:CDS |
| TGATAACCCATCAAATGAAT+TGG | 0.321881 | 4.1:+12273964 | MS.gene27903:CDS |
| AGCCTGATTTGCAGACATTA+TGG | 0.326446 | 4.1:+12278946 | MS.gene27903:CDS |
| CTCTTGCTTCTCTACAAACT+TGG | 0.328148 | 4.1:-12274349 | None:intergenic |
| AGCTAGATATCGCTTGTATT+AGG | 0.333158 | 4.1:+12279727 | MS.gene27903:CDS |
| TAATAATCCATCATTTGAAT+TGG | 0.339315 | 4.1:+12272476 | MS.gene27903:CDS |
| TTTGAATTGGAAGTTGATCT+TGG | 0.349340 | 4.1:+12272489 | MS.gene27903:CDS |
| ATGGCAGATAACACACAAAA+AGG | 0.350267 | 4.1:+12278965 | MS.gene27903:CDS |
| TCAACTTCCAATTCATTTGA+TGG | 0.350747 | 4.1:-12273971 | None:intergenic |
| TGCCATAATGTCTGCAAATC+AGG | 0.351649 | 4.1:-12278948 | None:intergenic |
| TTCAGAAGACTTGACGCTTT+AGG | 0.351852 | 4.1:-12272414 | None:intergenic |
| ATTCTCTGCCTCCACCCTTT+GGG | 0.352470 | 4.1:-12279328 | None:intergenic |
| TTCAAAAGACTTGACGCTTT+AGG | 0.353871 | 4.1:-12274255 | None:intergenic |
| GGAGAATCAATCAAATGAAT+TGG | 0.357053 | 4.1:+12275559 | MS.gene27903:CDS |
| GCAACTTCCAACTCATTTGA+TGG | 0.361666 | 4.1:-12275515 | None:intergenic |
| TTCTGAAGACTTGACACTTT+AGG | 0.365515 | 4.1:-12275446 | None:intergenic |
| TTCTGAAGAGTAGACGCTTT+AGG | 0.365624 | 4.1:-12273902 | None:intergenic |
| TGCTGAAGACTTGACGCTTT+AGG | 0.365823 | 4.1:-12273147 | None:intergenic |
| TTCTGAAGACTTGACGCTTT+AGG | 0.367145 | 4.1:-12273526 | None:intergenic |
| TGAGTCTGATTGGAAATTCT+TGG | 0.369640 | 4.1:+12278606 | MS.gene27903:CDS |
| TCAACTTCCAAATCATTTGA+TGG | 0.372340 | 4.1:-12275069 | None:intergenic |
| TCAGACTCATTGACGTCATC+AGG | 0.373190 | 4.1:-12278592 | None:intergenic |
| TTCTGAAGACTTGACACTTT+AGG | 0.373672 | 4.1:-12274623 | None:intergenic |
| ATGAAGCAGGCCGTTTATAT+CGG | 0.376195 | 4.1:+12278500 | MS.gene27903:CDS |
| TTCTGAAGACTTGACGCTTT+AGG | 0.380718 | 4.1:-12275000 | None:intergenic |
| GGACTCGACCTCAACAAGTT+TGG | 0.381644 | 4.1:-12279379 | None:intergenic |
| TCTTAAACTTCTCTTTGAAA+TGG | 0.394970 | 4.1:-12274594 | None:intergenic |
| TCAACTTCCAATTCAAATGA+TGG | 0.401502 | 4.1:-12272483 | None:intergenic |
| AGATGTGATAACAGATATTA+GGG | 0.404825 | 4.1:+12279697 | MS.gene27903:CDS |
| TCCTGCTCCTCTACAGAGTC+AGG | 0.409851 | 4.1:-12275590 | None:intergenic |
| CCGTCGCTCCTCTGCCAGTT+GGG | 0.412391 | 4.1:-12279400 | None:intergenic |
| TCCACTTGTTCACATTAAAA+CGG | 0.416746 | 4.1:-12276958 | None:intergenic |
| ATTTCAAAGAGAAGTTTAAG+AGG | 0.428244 | 4.1:+12274596 | MS.gene27903:CDS |
| TTTGTAGAGGAGCAGGCAAC+AGG | 0.431641 | 4.1:+12274722 | MS.gene27903:CDS |
| GATCAGTAATGAAGTCATTA+CGG | 0.436319 | 4.1:-12276910 | None:intergenic |
| TTTGTAGAGGAGCAAGAAAT+AGG | 0.437140 | 4.1:+12274001 | MS.gene27903:CDS |
| AGGTTCCATGGCAAAGAGAA+AGG | 0.437723 | 4.1:+12275412 | MS.gene27903:intron |
| TCCTGCTCCTCTACAAGCTC+AGG | 0.439898 | 4.1:-12273619 | None:intergenic |
| TTGAATTGGAAGTTGATCTT+GGG | 0.441555 | 4.1:+12272490 | MS.gene27903:CDS |
| AGGCTGGTGGCTGTAGGTCC+AGG | 0.443742 | 4.1:+12276887 | MS.gene27903:CDS |
| TTATCACATCTTCCGCCTCA+TGG | 0.446333 | 4.1:-12279685 | None:intergenic |
| CCACTTGTTCACATTAAAAC+GGG | 0.448981 | 4.1:-12276957 | None:intergenic |
| TCTTGGGTTTGTAGAGGAGC+AGG | 0.450818 | 4.1:+12272506 | MS.gene27903:CDS |
| TCCTGAGCTTGTAGAGGAGC+AGG | 0.454298 | 4.1:+12273618 | MS.gene27903:CDS |
| GATGGATTATTAAGAACAAC+CGG | 0.455190 | 4.1:-12272465 | None:intergenic |
| CAAAGAGAAGTTTAAGAGGT+AGG | 0.460609 | 4.1:+12274600 | MS.gene27903:CDS |
| CTGCCTTTAAGTCGGTGGTT+GGG | 0.460613 | 4.1:+12279217 | MS.gene27903:CDS |
| TTTGTAGAGGAGCAGGGGAC+AGG | 0.460722 | 4.1:+12272513 | MS.gene27903:CDS |
| CTTGTAGAGGAGCAGGAGAC+AGG | 0.461686 | 4.1:+12273625 | MS.gene27903:CDS |
| TAACAGCGGGACCCTGTGAC+TGG | 0.462835 | 4.1:+12278918 | MS.gene27903:intron |
| AAATGAATTGGAAGTTGATC+CGG | 0.466601 | 4.1:+12273976 | MS.gene27903:CDS |
| TCCTGCTCCTCTACAACGTC+AGG | 0.466617 | 4.1:-12275539 | None:intergenic |
| TCCGTCGCTCCTCTGCCAGT+TGG | 0.466866 | 4.1:-12279401 | None:intergenic |
| TCAACTTCTAATTCATTCGA+TGG | 0.467657 | 4.1:-12274324 | None:intergenic |
| TTGGTAGAGCAGCAGGTGAC+AGG | 0.469637 | 4.1:+12273246 | MS.gene27903:CDS |
| AGGTACCATGGCAAAGAGAA+AGG | 0.469697 | 4.1:+12272380 | None:intergenic |
| AGGTACCATGGCAAAGAGAA+AGG | 0.469697 | 4.1:+12274221 | MS.gene27903:intron |
| AGTGTCAAGTCTTCAGAAGC+AGG | 0.470712 | 4.1:+12274628 | MS.gene27903:CDS |
| TGAGGATGAGGTGGAAGTAA+TGG | 0.470828 | 4.1:+12279191 | MS.gene27903:CDS |
| TCCTGACTCTGTAGAGGAGC+AGG | 0.473160 | 4.1:+12275589 | MS.gene27903:CDS |
| TTGCTTCAGATACAAGAGTC+AGG | 0.473273 | 4.1:+12276765 | MS.gene27903:intron |
| TCTTCCCTTTCTCTTTGCCA+TGG | 0.473899 | 4.1:-12275417 | None:intergenic |
| TCTTGAGTTTGTAGAGGAGC+AGG | 0.474752 | 4.1:+12274715 | MS.gene27903:CDS |
| ACAGAGAGCAAATGTCAAAT+CGG | 0.476160 | 4.1:+12273179 | MS.gene27903:CDS |
| ACACAGTGCAAGTGTCGAAC+CGG | 0.477791 | 4.1:+12272446 | MS.gene27903:CDS |
| CAACTTCCAATTCATTTGAT+GGG | 0.479734 | 4.1:-12273970 | None:intergenic |
| TCAGGCTCCTTTCCAGTCAC+AGG | 0.480785 | 4.1:-12278930 | None:intergenic |
| AGCGTCAAGTCTTCTGAAGA+AGG | 0.484194 | 4.1:+12272419 | MS.gene27903:CDS |
| GATGGATTATCAAGAACAAC+CGG | 0.485164 | 4.1:-12275051 | None:intergenic |
| AGCGTCAAGTCTTCAGAAGA+AGG | 0.486366 | 4.1:+12273531 | MS.gene27903:CDS |
| TCTTGCTTCTCTACAAACTT+GGG | 0.486475 | 4.1:-12274348 | None:intergenic |
| TCTGTAGAGGAGCAGGAGAC+AGG | 0.487186 | 4.1:+12275596 | MS.gene27903:CDS |
| TCTTCCCTTTCTCTTTGCCA+TGG | 0.488381 | 4.1:-12272385 | None:intergenic |
| TCTTCCCTTTCTCTTTGCCA+TGG | 0.488381 | 4.1:-12274226 | None:intergenic |
| TCCTGAGTTGGTAGAGCAGC+AGG | 0.491712 | 4.1:+12273239 | MS.gene27903:CDS |
| AGCGTCAAGTCTTCAGAAGC+AGG | 0.491830 | 4.1:+12275005 | MS.gene27903:CDS |
| GTCATCAGGGATATGCTTCA+AGG | 0.491897 | 4.1:-12278578 | None:intergenic |
| AGTGTCAAGTCTTCAGAAGA+AGG | 0.492126 | 4.1:+12275451 | MS.gene27903:CDS |
| TGGGAAGCAATCATATATGC+AGG | 0.493010 | 4.1:+12279236 | MS.gene27903:CDS |
| TGTTGAGGTCGAGTCCCAAC+TGG | 0.495312 | 4.1:+12279386 | MS.gene27903:CDS |
| TAAAGAGAAATTTAAGAGAT+CGG | 0.495754 | 4.1:+12273503 | MS.gene27903:CDS |
| TCCTGACGTTGTAGAGGAGC+AGG | 0.496741 | 4.1:+12275538 | MS.gene27903:CDS |
| TAATAATCCATCAAATGAGT+TGG | 0.498386 | 4.1:+12275508 | MS.gene27903:CDS |
| AGGCGTAAGAATAAAGTAAG+AGG | 0.500263 | 4.1:+12276785 | MS.gene27903:CDS |
| AAAGAGTGCAAATGTCAAAC+CGG | 0.503507 | 4.1:+12275032 | MS.gene27903:CDS |
| TATGCAGGAAATCAACAGTC+AGG | 0.507449 | 4.1:+12279467 | MS.gene27903:CDS |
| TGTTCGAGTTCAAGAGCTGC+AGG | 0.507588 | 4.1:+12279293 | MS.gene27903:CDS |
| TTCAAGATACAGATGTGGTT+CGG | 0.507876 | 4.1:+12278464 | MS.gene27903:CDS |
| TATATCGGAGTCGGCGCCAC+AGG | 0.507889 | 4.1:+12278515 | MS.gene27903:CDS |
| ATTGCAAAGAGAAAGTTAAG+AGG | 0.508898 | 4.1:+12274973 | MS.gene27903:CDS |
| TCTTAACTTTCTCTTTGCCA+TGG | 0.510685 | 4.1:-12273118 | None:intergenic |
| AGCGTCTACTCTTCAGAAGA+AGG | 0.514021 | 4.1:+12273907 | MS.gene27903:CDS |
| ATGACGTCAATGAGTCTGAT+TGG | 0.514502 | 4.1:+12278596 | MS.gene27903:CDS |
| AATCAATATACCTCAAAAGA+AGG | 0.514859 | 4.1:-12278646 | None:intergenic |
| CTCATTAACCCACTCCCCAT+TGG | 0.514976 | 4.1:-12278988 | None:intergenic |
| ACTGCCTTTAAGTCGGTGGT+TGG | 0.517338 | 4.1:+12279216 | MS.gene27903:CDS |
| TTTGTAGAGAAGCAAGAGAC+AGG | 0.517788 | 4.1:+12274354 | MS.gene27903:CDS |
| CAATGGGGAGTGGGTTAATG+AGG | 0.519160 | 4.1:+12278989 | MS.gene27903:CDS |
| TCTTGCTCCTCTACAAACTC+CGG | 0.523797 | 4.1:-12273995 | None:intergenic |
| GGTTCCATGGCAAAGAGAAA+GGG | 0.524638 | 4.1:+12275413 | MS.gene27903:intron |
| GGGTGGAGGCAGAGAATGCT+AGG | 0.531465 | 4.1:+12279334 | MS.gene27903:CDS |
| CAAAGAGAAATTTGAGAGAT+CGG | 0.538439 | 4.1:+12273879 | MS.gene27903:CDS |
| GGCTGAATTAGATGCCCAAA+GGG | 0.538742 | 4.1:+12279314 | MS.gene27903:CDS |
| CCTACGAGGCTGGTGGCTGT+AGG | 0.539947 | 4.1:+12276881 | MS.gene27903:CDS |
| TCTTAACTTTCTCTTTGCAA+TGG | 0.539962 | 4.1:-12274971 | None:intergenic |
| AAGTACTAAAGATACTATAG+TGG | 0.543254 | 4.1:+12276994 | MS.gene27903:CDS |
| AATATTGAGACAATGCTGAC+TGG | 0.546405 | 4.1:-12279503 | None:intergenic |
| GCTAGAGAATTCTGAGGATG+AGG | 0.546881 | 4.1:+12279179 | MS.gene27903:CDS |
| TTACTTAAAATTTGAAACAA+AGG | 0.548318 | 4.1:+12278549 | MS.gene27903:CDS |
| ATCAAAGCTAGCTGCTTGAA+AGG | 0.550346 | 4.1:-12278806 | None:intergenic |
| GAGTTTGTAGAGGAGGAGAC+AGG | 0.551866 | 4.1:+12275096 | MS.gene27903:CDS |
| AGCGTCAAGTCTTCAGCAGA+TGG | 0.555256 | 4.1:+12273152 | MS.gene27903:CDS |
| TGATCCCGAGTTTGTAGAGG+AGG | 0.555539 | 4.1:+12275089 | MS.gene27903:CDS |
| ACTGAGTCGAGATGGAAAGT+TGG | 0.556259 | 4.1:+12276844 | MS.gene27903:CDS |
| ACAGAGCGCAAATGTCAAAA+CGG | 0.556630 | 4.1:+12274655 | MS.gene27903:CDS |
| GTCTCCTCCTCTACAAACTC+GGG | 0.557059 | 4.1:-12275093 | None:intergenic |
| TGTCTCCTCCTCTACAAACT+CGG | 0.559934 | 4.1:-12275094 | None:intergenic |
| GGTACCATGGCAAAGAGAAA+GGG | 0.560767 | 4.1:+12272381 | None:intergenic |
| GGTACCATGGCAAAGAGAAA+GGG | 0.560767 | 4.1:+12274222 | MS.gene27903:intron |
| CCCAACTGGCAGAGGAGCGA+CGG | 0.564166 | 4.1:+12279400 | MS.gene27903:CDS |
| CAAAGAGAAAGTTAAGAGGT+AGG | 0.570257 | 4.1:+12274977 | MS.gene27903:CDS |
| AAGGCGATTATCGATGAAGC+AGG | 0.570651 | 4.1:+12278487 | MS.gene27903:CDS |
| AGTTGATCTTGGGTTTGTAG+AGG | 0.572021 | 4.1:+12272500 | MS.gene27903:CDS |
| ATTAAGAGCCAAACTTGTTG+AGG | 0.572539 | 4.1:+12279371 | MS.gene27903:CDS |
| CTTGGGTTTGTAGAGGAGCA+GGG | 0.572912 | 4.1:+12272507 | MS.gene27903:CDS |
| GGTCGAGTCCCAACTGGCAG+AGG | 0.576269 | 4.1:+12279392 | MS.gene27903:CDS |
| TCTTAAATTTCTCTTTAACA+TGG | 0.580244 | 4.1:-12273497 | None:intergenic |
| AAGCGTAAACTGAGTCGAGA+TGG | 0.581874 | 4.1:+12276836 | MS.gene27903:CDS |
| TGATATTCATCCTACGAGGC+TGG | 0.584829 | 4.1:+12276871 | MS.gene27903:CDS |
| ACCTGCTGCTCTACCAACTC+AGG | 0.584977 | 4.1:-12273240 | None:intergenic |
| ACGGAAACGAGAGGAGAGTG+AGG | 0.586157 | 4.1:+12279419 | MS.gene27903:CDS |
| ATTAGATGCCCAAAGGGTGG+AGG | 0.590973 | 4.1:+12279320 | MS.gene27903:CDS |
| CAAAGAGAAAGTTAAGAGAT+CGG | 0.594814 | 4.1:+12273124 | MS.gene27903:CDS |
| AGATACAGATGTGGTTCGGA+AGG | 0.597957 | 4.1:+12278468 | MS.gene27903:CDS |
| GTGTCAAGTCTTCAGAAGCA+GGG | 0.598010 | 4.1:+12274629 | MS.gene27903:CDS |
| GTAATGAAGTCATTACGGCC+TGG | 0.598380 | 4.1:-12276905 | None:intergenic |
| AGAGAATTCTGAGGATGAGG+TGG | 0.599063 | 4.1:+12279182 | MS.gene27903:CDS |
| AGTTGATCTTGAGTTTGTAG+AGG | 0.600145 | 4.1:+12274709 | MS.gene27903:CDS |
| CAGCGGATACATCATACTAG+TGG | 0.602911 | 4.1:+12278775 | MS.gene27903:CDS |
| AGTTGCTCCTGACGTTGTAG+AGG | 0.602942 | 4.1:+12275532 | MS.gene27903:CDS |
| GGAAACTGCCTTTAAGTCGG+TGG | 0.602974 | 4.1:+12279212 | MS.gene27903:CDS |
| AGTTGATCCGGAGTTTGTAG+AGG | 0.604279 | 4.1:+12273988 | MS.gene27903:CDS |
| AGTTGATCCCGAGTTTGTAG+AGG | 0.604279 | 4.1:+12275086 | MS.gene27903:CDS |
| GCGGGACCCTGTGACTGGAA+AGG | 0.604650 | 4.1:+12278923 | MS.gene27903:intron |
| GGCGCCGACTCCGATATAAA+CGG | 0.605809 | 4.1:-12278510 | None:intergenic |
| CCTACAGCCACCAGCCTCGT+AGG | 0.606776 | 4.1:-12276881 | None:intergenic |
| CAGACTCATTGACGTCATCA+GGG | 0.607592 | 4.1:-12278591 | None:intergenic |
| AGAGGAGCGACGGAAACGAG+AGG | 0.611564 | 4.1:+12279410 | MS.gene27903:CDS |
| AGATGATCCTGACTCTGTAG+AGG | 0.612790 | 4.1:+12275583 | MS.gene27903:CDS |
| TTGAGACAATGCTGACTGGA+TGG | 0.620427 | 4.1:-12279499 | None:intergenic |
| TTGGGTTTGTAGAGGAGCAG+GGG | 0.620467 | 4.1:+12272508 | MS.gene27903:CDS |
| AAAGTAAGAGGACAAACAAG+AGG | 0.624934 | 4.1:+12276797 | MS.gene27903:CDS |
| AGCGGATACATCATACTAGT+GGG | 0.626746 | 4.1:+12278776 | MS.gene27903:CDS |
| AATGGAAACTGCCTTTAAGT+CGG | 0.629497 | 4.1:+12279209 | MS.gene27903:CDS |
| CAGGCTCCTTTCCAGTCACA+GGG | 0.631724 | 4.1:-12278929 | None:intergenic |
| ATTTGAAGTTGATCCTGAGT+TGG | 0.632233 | 4.1:+12273227 | MS.gene27903:CDS |
| AGTTGATCCTGAGCTTGTAG+AGG | 0.632359 | 4.1:+12273612 | MS.gene27903:CDS |
| GGGAAGCAATCATATATGCA+GGG | 0.632925 | 4.1:+12279237 | MS.gene27903:CDS |
| AGGCTGAATTAGATGCCCAA+AGG | 0.633913 | 4.1:+12279313 | MS.gene27903:CDS |
| ATGGCAAAGAGAAAGGGAAG+AGG | 0.637485 | 4.1:+12272387 | MS.gene27903:CDS |
| CAGGCCGTTTATATCGGAGT+CGG | 0.645550 | 4.1:+12278506 | MS.gene27903:CDS |
| TATTCATCCTACGAGGCTGG+TGG | 0.646755 | 4.1:+12276874 | MS.gene27903:CDS |
| AAGTAAGAGGACAAACAAGA+GGG | 0.650275 | 4.1:+12276798 | MS.gene27903:CDS |
| ATGGCAAAGAGAAAGGGAAG+AGG | 0.656936 | 4.1:+12274228 | MS.gene27903:CDS |
| TGAATTAGATGCCCAAAGGG+TGG | 0.663302 | 4.1:+12279317 | MS.gene27903:CDS |
| CAAAGAGAAAGGGAAGATGT+CGG | 0.667696 | 4.1:+12275423 | MS.gene27903:CDS |
| TGAAGCACAACTCCATGAGG+CGG | 0.667829 | 4.1:+12279673 | MS.gene27903:CDS |
| GAGACTTCAAGATACAGATG+TGG | 0.668184 | 4.1:+12278459 | MS.gene27903:CDS |
| CAAAGAGAAAGGGAAGAGGT+CGG | 0.681304 | 4.1:+12274232 | MS.gene27903:CDS |
| AGTAATGCTCATGAAGCCTG+TGG | 0.683773 | 4.1:-12278531 | None:intergenic |
| GCTTGAAGCACAACTCCATG+AGG | 0.683823 | 4.1:+12279670 | MS.gene27903:CDS |
| GAGTCTGCTAGAGAATTCTG+AGG | 0.685882 | 4.1:+12279173 | MS.gene27903:CDS |
| ATGTTGATATTCATCCTACG+AGG | 0.745737 | 4.1:+12276867 | MS.gene27903:CDS |
| AGGCAAGTAAGGCAAAACAG+CGG | 0.773909 | 4.1:+12278758 | MS.gene27903:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 12272387 | 12279748 | 12272387 | ID=MS.gene27903 |
| chr4.1 | mRNA | 12272387 | 12279748 | 12272387 | ID=MS.gene27903.t1;Parent=MS.gene27903 |
| chr4.1 | exon | 12272387 | 12272534 | 12272387 | ID=MS.gene27903.t1.exon1;Parent=MS.gene27903.t1 |
| chr4.1 | CDS | 12272387 | 12272534 | 12272387 | ID=cds.MS.gene27903.t1;Parent=MS.gene27903.t1 |
| chr4.1 | exon | 12273115 | 12273267 | 12273115 | ID=MS.gene27903.t1.exon2;Parent=MS.gene27903.t1 |
| chr4.1 | CDS | 12273115 | 12273267 | 12273115 | ID=cds.MS.gene27903.t1;Parent=MS.gene27903.t1 |
| chr4.1 | exon | 12273494 | 12273646 | 12273494 | ID=MS.gene27903.t1.exon3;Parent=MS.gene27903.t1 |
| chr4.1 | CDS | 12273494 | 12273646 | 12273494 | ID=cds.MS.gene27903.t1;Parent=MS.gene27903.t1 |
| chr4.1 | exon | 12273870 | 12274022 | 12273870 | ID=MS.gene27903.t1.exon4;Parent=MS.gene27903.t1 |
| chr4.1 | CDS | 12273870 | 12274022 | 12273870 | ID=cds.MS.gene27903.t1;Parent=MS.gene27903.t1 |
| chr4.1 | exon | 12274223 | 12274375 | 12274223 | ID=MS.gene27903.t1.exon5;Parent=MS.gene27903.t1 |
| chr4.1 | CDS | 12274223 | 12274375 | 12274223 | ID=cds.MS.gene27903.t1;Parent=MS.gene27903.t1 |
| chr4.1 | exon | 12274591 | 12274743 | 12274591 | ID=MS.gene27903.t1.exon6;Parent=MS.gene27903.t1 |
| chr4.1 | CDS | 12274591 | 12274743 | 12274591 | ID=cds.MS.gene27903.t1;Parent=MS.gene27903.t1 |
| chr4.1 | exon | 12274968 | 12275117 | 12274968 | ID=MS.gene27903.t1.exon7;Parent=MS.gene27903.t1 |
| chr4.1 | CDS | 12274968 | 12275117 | 12274968 | ID=cds.MS.gene27903.t1;Parent=MS.gene27903.t1 |
| chr4.1 | exon | 12275414 | 12275617 | 12275414 | ID=MS.gene27903.t1.exon8;Parent=MS.gene27903.t1 |
| chr4.1 | CDS | 12275414 | 12275617 | 12275414 | ID=cds.MS.gene27903.t1;Parent=MS.gene27903.t1 |
| chr4.1 | exon | 12276774 | 12277027 | 12276774 | ID=MS.gene27903.t1.exon9;Parent=MS.gene27903.t1 |
| chr4.1 | CDS | 12276774 | 12277027 | 12276774 | ID=cds.MS.gene27903.t1;Parent=MS.gene27903.t1 |
| chr4.1 | exon | 12278451 | 12278657 | 12278451 | ID=MS.gene27903.t1.exon10;Parent=MS.gene27903.t1 |
| chr4.1 | CDS | 12278451 | 12278657 | 12278451 | ID=cds.MS.gene27903.t1;Parent=MS.gene27903.t1 |
| chr4.1 | exon | 12278739 | 12278831 | 12278739 | ID=MS.gene27903.t1.exon11;Parent=MS.gene27903.t1 |
| chr4.1 | CDS | 12278739 | 12278831 | 12278739 | ID=cds.MS.gene27903.t1;Parent=MS.gene27903.t1 |
| chr4.1 | exon | 12278924 | 12279028 | 12278924 | ID=MS.gene27903.t1.exon12;Parent=MS.gene27903.t1 |
| chr4.1 | CDS | 12278924 | 12279028 | 12278924 | ID=cds.MS.gene27903.t1;Parent=MS.gene27903.t1 |
| chr4.1 | exon | 12279147 | 12279533 | 12279147 | ID=MS.gene27903.t1.exon13;Parent=MS.gene27903.t1 |
| chr4.1 | CDS | 12279147 | 12279533 | 12279147 | ID=cds.MS.gene27903.t1;Parent=MS.gene27903.t1 |
| chr4.1 | exon | 12279623 | 12279748 | 12279623 | ID=MS.gene27903.t1.exon14;Parent=MS.gene27903.t1 |
| chr4.1 | CDS | 12279623 | 12279748 | 12279623 | ID=cds.MS.gene27903.t1;Parent=MS.gene27903.t1 |
| Gene Sequence |
| Protein sequence |
