Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28057.t1 | XP_013446783.2 | 59.9 | 491 | 7 | 2 | 1 | 302 | 1 | 490 | 1.90E-139 | 505.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28057.t1 | P56725 | 34.0 | 456 | 106 | 4 | 33 | 302 | 8 | 454 | 9.3e-55 | 215.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28057.t1 | A0A396GP68 | 59.9 | 491 | 7 | 2 | 1 | 302 | 1 | 490 | 1.3e-139 | 505.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050381 | MS.gene28057 | 0.840097 | 1.07E-57 | -1.69E-46 |
| MS.gene050504 | MS.gene28057 | -0.812436 | 4.24E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene28057 | -0.827159 | 1.82E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene28057 | -0.830542 | 2.77E-55 | -1.69E-46 |
| MS.gene050883 | MS.gene28057 | 0.82608 | 3.30E-54 | -1.69E-46 |
| MS.gene051127 | MS.gene28057 | 0.809095 | 2.24E-50 | -1.69E-46 |
| MS.gene05141 | MS.gene28057 | 0.834893 | 2.30E-56 | -1.69E-46 |
| MS.gene051946 | MS.gene28057 | 0.875236 | 3.61E-68 | -1.69E-46 |
| MS.gene05234 | MS.gene28057 | 0.825184 | 5.38E-54 | -1.69E-46 |
| MS.gene052482 | MS.gene28057 | -0.800506 | 1.40E-48 | -1.69E-46 |
| MS.gene052486 | MS.gene28057 | -0.804061 | 2.59E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene28057 | 0.839539 | 1.49E-57 | -1.69E-46 |
| MS.gene053549 | MS.gene28057 | 0.808032 | 3.78E-50 | -1.69E-46 |
| MS.gene053826 | MS.gene28057 | 0.806404 | 8.36E-50 | -1.69E-46 |
| MS.gene054003 | MS.gene28057 | -0.827534 | 1.48E-54 | -1.69E-46 |
| MS.gene054706 | MS.gene28057 | 0.803262 | 3.79E-49 | -1.69E-46 |
| MS.gene054708 | MS.gene28057 | 0.825504 | 4.52E-54 | -1.69E-46 |
| MS.gene05470 | MS.gene28057 | -0.800074 | 1.71E-48 | -1.69E-46 |
| MS.gene055154 | MS.gene28057 | 0.812903 | 3.35E-51 | -1.69E-46 |
| MS.gene055202 | MS.gene28057 | 0.827114 | 1.87E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene28057 | -0.810084 | 1.37E-50 | -1.69E-46 |
| MS.gene056310 | MS.gene28057 | 0.812437 | 4.24E-51 | -1.69E-46 |
| MS.gene056311 | MS.gene28057 | 0.833195 | 6.13E-56 | -1.69E-46 |
| MS.gene056313 | MS.gene28057 | 0.820001 | 8.64E-53 | -1.69E-46 |
| MS.gene057014 | MS.gene28057 | 0.85596 | 4.44E-62 | -1.69E-46 |
| MS.gene057173 | MS.gene28057 | 0.838568 | 2.66E-57 | -1.69E-46 |
| MS.gene05726 | MS.gene28057 | 0.836837 | 7.40E-57 | -1.69E-46 |
| MS.gene058068 | MS.gene28057 | 0.811174 | 7.99E-51 | -1.69E-46 |
| MS.gene058099 | MS.gene28057 | 0.808811 | 2.58E-50 | -1.69E-46 |
| MS.gene058157 | MS.gene28057 | -0.860544 | 1.92E-63 | -1.69E-46 |
| MS.gene058171 | MS.gene28057 | 0.822889 | 1.86E-53 | -1.69E-46 |
| MS.gene058173 | MS.gene28057 | 0.816607 | 5.07E-52 | -1.69E-46 |
| MS.gene058175 | MS.gene28057 | 0.819936 | 8.94E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene28057 | -0.826311 | 2.91E-54 | -1.69E-46 |
| MS.gene058493 | MS.gene28057 | 0.825828 | 3.79E-54 | -1.69E-46 |
| MS.gene058494 | MS.gene28057 | 0.809728 | 1.64E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene28057 | -0.802934 | 4.43E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene28057 | 0.855672 | 5.39E-62 | -1.69E-46 |
| MS.gene060187 | MS.gene28057 | 0.800134 | 1.66E-48 | -1.69E-46 |
| MS.gene060595 | MS.gene28057 | 0.840373 | 9.04E-58 | -1.69E-46 |
| MS.gene060602 | MS.gene28057 | 0.820681 | 6.03E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene28057 | -0.831852 | 1.32E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28057.t1 | MTR_8g090095 | 97.817 | 229 | 4 | 1 | 10 | 238 | 1 | 228 | 4.43e-164 | 465 |
| MS.gene28057.t1 | MTR_8g090095 | 93.846 | 65 | 4 | 0 | 238 | 302 | 417 | 481 | 8.95e-35 | 131 |
| MS.gene28057.t1 | MTR_1g029540 | 61.809 | 199 | 69 | 2 | 40 | 238 | 19 | 210 | 4.48e-80 | 250 |
| MS.gene28057.t1 | MTR_1g029540 | 67.692 | 65 | 21 | 0 | 238 | 302 | 397 | 461 | 8.50e-23 | 98.2 |
| MS.gene28057.t1 | MTR_4g008630 | 57.940 | 233 | 87 | 3 | 32 | 264 | 11 | 232 | 8.66e-78 | 244 |
| MS.gene28057.t1 | MTR_4g008630 | 73.438 | 64 | 17 | 0 | 239 | 302 | 401 | 464 | 1.63e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTTCATCCGTAGCTAAA+AGG | 0.191915 | 4.4:-10892216 | MS.gene28057:CDS |
| CCTTCTAGAGAAGGAACTTC+TGG | 0.234817 | 4.4:+10892028 | None:intergenic |
| TGTCATTTATGACTCCCTTA+TGG | 0.295588 | 4.4:-10892188 | MS.gene28057:CDS |
| CTACTACCACTTGGTGGGTT+TGG | 0.318095 | 4.4:+10892545 | None:intergenic |
| GACGAGAGAGGTGGAGAAGT+TGG | 0.358535 | 4.4:+10892488 | None:intergenic |
| CCAACCTTGGACACGAACTA+TGG | 0.380494 | 4.4:+10892405 | None:intergenic |
| CCAGAAGTTCCTTCTCTAGA+AGG | 0.396393 | 4.4:-10892028 | MS.gene28057:CDS |
| TGGTGTTTCACGTATGGAAC+TGG | 0.397587 | 4.4:-10891207 | MS.gene28057:CDS |
| CTACCACTTGGTGGGTTTGG+TGG | 0.423175 | 4.4:+10892548 | None:intergenic |
| AGGAACTTCTGGGATAATAT+TGG | 0.423810 | 4.4:+10892039 | None:intergenic |
| TTTGAAGAAGCTTGAAAGGA+AGG | 0.426011 | 4.4:+10892271 | None:intergenic |
| GTTGTGTTGTGCCAACAAAA+TGG | 0.439444 | 4.4:+10892440 | None:intergenic |
| GTGGGTTTGGTGGATGACTT+TGG | 0.443349 | 4.4:+10892558 | None:intergenic |
| CTTGTATACAAGAAGCCATA+AGG | 0.445367 | 4.4:+10892173 | None:intergenic |
| AAATGAAATTCTTGAGTCAA+TGG | 0.449192 | 4.4:-10891237 | MS.gene28057:CDS |
| TGGTTGAGATGGCCTTGTGC+TGG | 0.459658 | 4.4:+10892508 | None:intergenic |
| TTTGCATTTGGGTTTGGAGG+AGG | 0.467661 | 4.4:+10892319 | None:intergenic |
| ACTTTCATCCGTAGCTAAAA+GGG | 0.472204 | 4.4:-10892215 | MS.gene28057:CDS |
| TTGAAGCCATTGTTGTACTT+TGG | 0.485894 | 4.4:+10892617 | None:intergenic |
| CCATAGTTCGTGTCCAAGGT+TGG | 0.486492 | 4.4:-10892405 | MS.gene28057:CDS |
| CTTCTAGAGAAGGAACTTCT+GGG | 0.490881 | 4.4:+10892029 | None:intergenic |
| AAGATTTGAAGAAGCTTGAA+AGG | 0.491768 | 4.4:+10892267 | None:intergenic |
| TGACTTTGGTGCCCTTGCTA+AGG | 0.493545 | 4.4:+10892572 | None:intergenic |
| CATAGTTCGTGTCCAAGGTT+GGG | 0.497015 | 4.4:-10892404 | MS.gene28057:CDS |
| TTGTATACAAGAAGCCATAA+GGG | 0.500120 | 4.4:+10892174 | None:intergenic |
| TTGGAGTCAAAGGGATGAGT+TGG | 0.500922 | 4.4:-10891348 | MS.gene28057:CDS |
| GAGTCAAAGGGATGAGTTGG+TGG | 0.514091 | 4.4:-10891345 | MS.gene28057:CDS |
| GTTGGTGGTGGCTTCTGTTG+TGG | 0.527494 | 4.4:-10891330 | MS.gene28057:CDS |
| GGTGGAGAAGTTGGTTGAGA+TGG | 0.528608 | 4.4:+10892497 | None:intergenic |
| CAAAAGAAGGTGATGAAATG+AGG | 0.541970 | 4.4:-10891280 | MS.gene28057:CDS |
| AGGTTGATGGCTACAAAAGA+AGG | 0.543266 | 4.4:-10891293 | MS.gene28057:CDS |
| AACAACTACTACCACTTGGT+GGG | 0.543409 | 4.4:+10892540 | None:intergenic |
| TTGTGAAGGATTGGAGTCAA+AGG | 0.543518 | 4.4:-10891358 | MS.gene28057:intron |
| GAATGTTGTGAGAAGGTTGA+TGG | 0.543891 | 4.4:-10891306 | MS.gene28057:CDS |
| CAACAACTACTACCACTTGG+TGG | 0.543959 | 4.4:+10892539 | None:intergenic |
| ATGAAATAAGACGAGAGAGG+TGG | 0.555446 | 4.4:+10892479 | None:intergenic |
| GGTTGAGATGGCCTTGTGCT+GGG | 0.558023 | 4.4:+10892509 | None:intergenic |
| GGAGGAGGTGAAACAAAGGT+TGG | 0.563734 | 4.4:+10892334 | None:intergenic |
| CAAGCCATAGTTCGTGTCCA+AGG | 0.579991 | 4.4:-10892409 | MS.gene28057:CDS |
| TGTGAAGGATTGGAGTCAAA+GGG | 0.581978 | 4.4:-10891357 | MS.gene28057:intron |
| AGATGGCCTTGTGCTGGGAA+AGG | 0.583028 | 4.4:+10892514 | None:intergenic |
| GTTGTGCCTTTCCCAGCACA+AGG | 0.586085 | 4.4:-10892520 | MS.gene28057:CDS |
| GTGAAACATCCTTCTAGAGA+AGG | 0.586476 | 4.4:+10892019 | None:intergenic |
| TGAAGGTGGTGTTTCACGTA+TGG | 0.591938 | 4.4:-10891213 | MS.gene28057:CDS |
| TCAAAGGGATGAGTTGGTGG+TGG | 0.594033 | 4.4:-10891342 | MS.gene28057:CDS |
| GTTTGGAGGAGGTGAAACAA+AGG | 0.609420 | 4.4:+10892330 | None:intergenic |
| GAGTTTCATAAATTCAGCAA+TGG | 0.609838 | 4.4:-10891962 | MS.gene28057:CDS |
| GTTGTGCCAACAAAATGGAT+TGG | 0.612925 | 4.4:+10892445 | None:intergenic |
| ATTCTTGAGTCAATGGATGA+AGG | 0.616575 | 4.4:-10891230 | MS.gene28057:CDS |
| TTGTGGAGAATGTTGTGAGA+AGG | 0.618446 | 4.4:-10891313 | MS.gene28057:CDS |
| GCACAACAACTACTACCACT+TGG | 0.629584 | 4.4:+10892536 | None:intergenic |
| GAACAATCTACAATACAACA+AGG | 0.658862 | 4.4:-10891940 | MS.gene28057:CDS |
| TAGCTACCAAAGTACAACAA+TGG | 0.666582 | 4.4:-10892623 | MS.gene28057:CDS |
| CATCCACCAAACCCACCAAG+TGG | 0.675812 | 4.4:-10892551 | MS.gene28057:CDS |
| AACAATCTACAATACAACAA+GGG | 0.689066 | 4.4:-10891939 | MS.gene28057:intron |
| ATAATGAAATAAGACGAGAG+AGG | 0.699994 | 4.4:+10892476 | None:intergenic |
| CTTGAGTCAATGGATGAAGG+TGG | 0.737225 | 4.4:-10891227 | MS.gene28057:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTTGAAAATGATTT+TGG | + | chr4.4:10891433-10891452 | None:intergenic | 15.0% |
| !!! | AGTTTTTTGAAAATGATTTT+GGG | + | chr4.4:10891432-10891451 | None:intergenic | 15.0% |
| !! | AAAGAAACAATAATAAAGCT+AGG | - | chr4.4:10891986-10892005 | MS.gene28057:CDS | 20.0% |
| !! | AAAGTAAGCAAAAATTTATC+TGG | - | chr4.4:10892127-10892146 | MS.gene28057:CDS | 20.0% |
| !! | AAGTAAGCAAAAATTTATCT+GGG | - | chr4.4:10892128-10892147 | MS.gene28057:CDS | 20.0% |
| !!! | ATTTTAAGTCATTCTTCTAT+AGG | - | chr4.4:10892291-10892310 | MS.gene28057:CDS | 20.0% |
| !!! | CAGTAATTTATGTATCTTTT+GGG | - | chr4.4:10892049-10892068 | MS.gene28057:CDS | 20.0% |
| !!! | GAAATTTTGATTTTGCATTT+GGG | + | chr4.4:10891504-10891523 | None:intergenic | 20.0% |
| !!! | TATAATTTGTTCCTCTTTTA+AGG | + | chr4.4:10892085-10892104 | None:intergenic | 20.0% |
| !!! | TCAGTAATTTATGTATCTTT+TGG | - | chr4.4:10892048-10892067 | MS.gene28057:CDS | 20.0% |
| ! | AAATGAAATTCTTGAGTCAA+TGG | - | chr4.4:10892572-10892591 | MS.gene28057:CDS | 25.0% |
| ! | AAATTATAGAGCTTGCAAAT+GGG | - | chr4.4:10892097-10892116 | MS.gene28057:CDS | 25.0% |
| ! | AACAATCTACAATACAACAA+GGG | - | chr4.4:10891870-10891889 | MS.gene28057:intron | 25.0% |
| ! | CCTTATATAGAGTTAATAGA+AGG | - | chr4.4:10891904-10891923 | MS.gene28057:intron | 25.0% |
| ! | CCTTCTATTAACTCTATATA+AGG | + | chr4.4:10891907-10891926 | None:intergenic | 25.0% |
| ! | TGACTTAAAATTTCCAATTG+CGG | + | chr4.4:10892282-10892301 | None:intergenic | 25.0% |
| !! | TTCTTTTCTCAACACATAAA+GGG | + | chr4.4:10891972-10891991 | None:intergenic | 25.0% |
| !! | TTTCTTTTCTCAACACATAA+AGG | + | chr4.4:10891973-10891992 | None:intergenic | 25.0% |
| !!! | GGAAATTTTGATTTTGCATT+TGG | + | chr4.4:10891505-10891524 | None:intergenic | 25.0% |
| !!! | TACCATGTTTTTGTTCTTTT+GGG | - | chr4.4:10891714-10891733 | MS.gene28057:intron | 25.0% |
| !!! | TAGAAACAGAGTTTTAGTTA+CGG | - | chr4.4:10892407-10892426 | MS.gene28057:CDS | 25.0% |
| !!! | TTACCATGTTTTTGTTCTTT+TGG | - | chr4.4:10891713-10891732 | MS.gene28057:intron | 25.0% |
| AAGAATGATTGAGTTACCAA+AGG | - | chr4.4:10892200-10892219 | MS.gene28057:CDS | 30.0% | |
| AAGATTTGAAGAAGCTTGAA+AGG | + | chr4.4:10891545-10891564 | None:intergenic | 30.0% | |
| ACTTAAAATTTCCAATTGCG+GGG | + | chr4.4:10892280-10892299 | None:intergenic | 30.0% | |
| AGAATGATTGAGTTACCAAA+GGG | - | chr4.4:10892201-10892220 | MS.gene28057:CDS | 30.0% | |
| ATAATGAAATAAGACGAGAG+AGG | + | chr4.4:10891336-10891355 | None:intergenic | 30.0% | |
| CAAATTATAGAGCTTGCAAA+TGG | - | chr4.4:10892096-10892115 | MS.gene28057:CDS | 30.0% | |
| CAACACATAAAGGGTTAAAT+GGG | + | chr4.4:10891963-10891982 | None:intergenic | 30.0% | |
| GAACAATCTACAATACAACA+AGG | - | chr4.4:10891869-10891888 | MS.gene28057:intron | 30.0% | |
| GACTTAAAATTTCCAATTGC+GGG | + | chr4.4:10892281-10892300 | None:intergenic | 30.0% | |
| GAGTTTCATAAATTCAGCAA+TGG | - | chr4.4:10891847-10891866 | MS.gene28057:intron | 30.0% | |
| TCAACACATAAAGGGTTAAA+TGG | + | chr4.4:10891964-10891983 | None:intergenic | 30.0% | |
| TTAAGTCATTCTTCTATAGG+TGG | - | chr4.4:10892294-10892313 | MS.gene28057:CDS | 30.0% | |
| TTGTATACAAGAAGCCATAA+GGG | + | chr4.4:10891638-10891657 | None:intergenic | 30.0% | |
| ! | AACATACCAATCCATTTTGT+TGG | - | chr4.4:10891358-10891377 | MS.gene28057:intron | 30.0% |
| ! | GTAACTAAAACTCTGTTTCT+AGG | + | chr4.4:10892408-10892427 | None:intergenic | 30.0% |
| ! | TTGGTAGAATTTTTCACTAG+TGG | + | chr4.4:10891754-10891773 | None:intergenic | 30.0% |
| !! | ACCATGTTTTTGTTCTTTTG+GGG | - | chr4.4:10891715-10891734 | MS.gene28057:intron | 30.0% |
| !! | TGTATGGAGAGTATTACTAT+GGG | - | chr4.4:10892345-10892364 | MS.gene28057:CDS | 30.0% |
| !! | TTGTATGGAGAGTATTACTA+TGG | - | chr4.4:10892344-10892363 | MS.gene28057:CDS | 30.0% |
| !! | TTTGATTTTGCATTTGGGTT+TGG | + | chr4.4:10891499-10891518 | None:intergenic | 30.0% |
| AAGGAAGGAAAAAGATGAGA+TGG | + | chr4.4:10891526-10891545 | None:intergenic | 35.0% | |
| ACCCCAAAAGAACAAAAACA+TGG | + | chr4.4:10891719-10891738 | None:intergenic | 35.0% | |
| ACTTTCATCCGTAGCTAAAA+GGG | - | chr4.4:10891594-10891613 | MS.gene28057:intron | 35.0% | |
| ATTCTTGAGTCAATGGATGA+AGG | - | chr4.4:10892579-10892598 | MS.gene28057:CDS | 35.0% | |
| CAAAAGAAGGTGATGAAATG+AGG | - | chr4.4:10892529-10892548 | MS.gene28057:CDS | 35.0% | |
| CACAAAAAAGTCCTTAGCAA+GGG | - | chr4.4:10891226-10891245 | MS.gene28057:CDS | 35.0% | |
| CTTGTATACAAGAAGCCATA+AGG | + | chr4.4:10891639-10891658 | None:intergenic | 35.0% | |
| GAATGATTGAGTTACCAAAG+GGG | - | chr4.4:10892202-10892221 | MS.gene28057:CDS | 35.0% | |
| GGTATTAAGAGATGCTGATA+GGG | - | chr4.4:10892149-10892168 | MS.gene28057:CDS | 35.0% | |
| GTATTAAGAGATGCTGATAG+GGG | - | chr4.4:10892150-10892169 | MS.gene28057:CDS | 35.0% | |
| TAGCTACCAAAGTACAACAA+TGG | - | chr4.4:10891186-10891205 | MS.gene28057:CDS | 35.0% | |
| TTGAAGCCATTGTTGTACTT+TGG | + | chr4.4:10891195-10891214 | None:intergenic | 35.0% | |
| TTGTGGATGGAATTCTTGTA+TGG | - | chr4.4:10892329-10892348 | MS.gene28057:CDS | 35.0% | |
| TTTGAAGAAGCTTGAAAGGA+AGG | + | chr4.4:10891541-10891560 | None:intergenic | 35.0% | |
| ! | GATTAGTCACAAGACTCATT+GGG | - | chr4.4:10891930-10891949 | MS.gene28057:intron | 35.0% |
| ! | GTTTTATGAGTCATTGTGGA+TGG | - | chr4.4:10892316-10892335 | MS.gene28057:CDS | 35.0% |
| ! | TGATTAGTCACAAGACTCAT+TGG | - | chr4.4:10891929-10891948 | MS.gene28057:intron | 35.0% |
| ! | TGTCATTTATGACTCCCTTA+TGG | - | chr4.4:10891621-10891640 | MS.gene28057:intron | 35.0% |
| !! | AGGAACTTCTGGGATAATAT+TGG | + | chr4.4:10891773-10891792 | None:intergenic | 35.0% |
| !! | CTAAAACTCTGTTTCTAGGT+TGG | + | chr4.4:10892404-10892423 | None:intergenic | 35.0% |
| !! | GTATGGAGAGTATTACTATG+GGG | - | chr4.4:10892346-10892365 | MS.gene28057:CDS | 35.0% |
| !! | TATGGAGAGTATTACTATGG+GGG | - | chr4.4:10892347-10892366 | MS.gene28057:CDS | 35.0% |
| !! | TTTAGTTACGGAAGTGCTTA+AGG | - | chr4.4:10892419-10892438 | MS.gene28057:CDS | 35.0% |
| !!! | CTTGCTAAGGACTTTTTTGT+GGG | + | chr4.4:10891227-10891246 | None:intergenic | 35.0% |
| !!! | TAAAGCTAGGCATTTTAGCT+TGG | - | chr4.4:10891999-10892018 | MS.gene28057:CDS | 35.0% |
| !!! | TTGTTCTTTTGGGGTGTAAT+GGG | - | chr4.4:10891724-10891743 | MS.gene28057:intron | 35.0% |
| !!! | TTTGTTCTTTTGGGGTGTAA+TGG | - | chr4.4:10891723-10891742 | MS.gene28057:intron | 35.0% |
| AACAACTACTACCACTTGGT+GGG | + | chr4.4:10891272-10891291 | None:intergenic | 40.0% | |
| ATGAAATAAGACGAGAGAGG+TGG | + | chr4.4:10891333-10891352 | None:intergenic | 40.0% | |
| CACTTTCATCCGTAGCTAAA+AGG | - | chr4.4:10891593-10891612 | MS.gene28057:intron | 40.0% | |
| CCACAAAAAAGTCCTTAGCA+AGG | - | chr4.4:10891225-10891244 | MS.gene28057:CDS | 40.0% | |
| GAAGAGAGGGTTGAAATTGA+AGG | - | chr4.4:10892228-10892247 | MS.gene28057:CDS | 40.0% | |
| GAATGTTGTGAGAAGGTTGA+TGG | - | chr4.4:10892503-10892522 | MS.gene28057:CDS | 40.0% | |
| GGGTATTAAGAGATGCTGAT+AGG | - | chr4.4:10892148-10892167 | MS.gene28057:CDS | 40.0% | |
| GTTGTGCCAACAAAATGGAT+TGG | + | chr4.4:10891367-10891386 | None:intergenic | 40.0% | |
| GTTGTGTTGTGCCAACAAAA+TGG | + | chr4.4:10891372-10891391 | None:intergenic | 40.0% | |
| TATAGAGCTTGCAAATGGGT+TGG | - | chr4.4:10892101-10892120 | MS.gene28057:CDS | 40.0% | |
| TGGGCTAATTGTGAGAGATT+GGG | - | chr4.4:10892254-10892273 | MS.gene28057:CDS | 40.0% | |
| TGTGAAGGATTGGAGTCAAA+GGG | - | chr4.4:10892452-10892471 | MS.gene28057:CDS | 40.0% | |
| TTGGGCTAATTGTGAGAGAT+TGG | - | chr4.4:10892253-10892272 | MS.gene28057:CDS | 40.0% | |
| TTGTGAAGGATTGGAGTCAA+AGG | - | chr4.4:10892451-10892470 | MS.gene28057:CDS | 40.0% | |
| TTGTGGAGAATGTTGTGAGA+AGG | - | chr4.4:10892496-10892515 | MS.gene28057:CDS | 40.0% | |
| ! | AGGGTTGAAATTGAAGGTGT+TGG | - | chr4.4:10892234-10892253 | MS.gene28057:CDS | 40.0% |
| ! | CTTCTAGAGAAGGAACTTCT+GGG | + | chr4.4:10891783-10891802 | None:intergenic | 40.0% |
| ! | GGTGATGTTTTCAATGAGGA+TGG | - | chr4.4:10892171-10892190 | MS.gene28057:CDS | 40.0% |
| ! | GTGAAACATCCTTCTAGAGA+AGG | + | chr4.4:10891793-10891812 | None:intergenic | 40.0% |
| ! | TAGGGGTGATGTTTTCAATG+AGG | - | chr4.4:10892167-10892186 | MS.gene28057:CDS | 40.0% |
| !! | AGGTTGATGGCTACAAAAGA+AGG | - | chr4.4:10892516-10892535 | MS.gene28057:CDS | 40.0% |
| !! | GACAACAACCCTTTTAGCTA+CGG | + | chr4.4:10891605-10891624 | None:intergenic | 40.0% |
| !! | GATTTTGCATTTGGGTTTGG+AGG | + | chr4.4:10891496-10891515 | None:intergenic | 40.0% |
| !! | GGGTTGAAATTGAAGGTGTT+GGG | - | chr4.4:10892235-10892254 | MS.gene28057:CDS | 40.0% |
| !! | TAAGGTTGGTTTGGTTGTGA+AGG | - | chr4.4:10892437-10892456 | MS.gene28057:CDS | 40.0% |
| !! | TTGGTTTGGTTGTGAAGGAT+TGG | - | chr4.4:10892442-10892461 | MS.gene28057:CDS | 40.0% |
| !!! | CCTTGCTAAGGACTTTTTTG+TGG | + | chr4.4:10891228-10891247 | None:intergenic | 40.0% |
| !!! | GGTGGTTTTATGAGTCATTG+TGG | - | chr4.4:10892312-10892331 | MS.gene28057:CDS | 40.0% |
| !!! | TTCCTCTTTTAAGGCTGTTG+TGG | + | chr4.4:10892076-10892095 | None:intergenic | 40.0% |
| ACCAAAGGGGTTTGAAGAGA+GGG | - | chr4.4:10892215-10892234 | MS.gene28057:CDS | 45.0% | |
| CAACAACTACTACCACTTGG+TGG | + | chr4.4:10891273-10891292 | None:intergenic | 45.0% | |
| CACAAGACTCATTGGGCTTT+AGG | - | chr4.4:10891937-10891956 | MS.gene28057:intron | 45.0% | |
| CATAGTTCGTGTCCAAGGTT+GGG | - | chr4.4:10891405-10891424 | MS.gene28057:intron | 45.0% | |
| CCAGAAGTTCCTTCTCTAGA+AGG | - | chr4.4:10891781-10891800 | MS.gene28057:intron | 45.0% | |
| CTTGAGTCAATGGATGAAGG+TGG | - | chr4.4:10892582-10892601 | MS.gene28057:CDS | 45.0% | |
| GACCACAACAGCCTTAAAAG+AGG | - | chr4.4:10892071-10892090 | MS.gene28057:CDS | 45.0% | |
| GCACAACAACTACTACCACT+TGG | + | chr4.4:10891276-10891295 | None:intergenic | 45.0% | |
| GGAGTGGCTTGATAAGCAAA+AGG | - | chr4.4:10892020-10892039 | MS.gene28057:CDS | 45.0% | |
| GTTTGGAGGAGGTGAAACAA+AGG | + | chr4.4:10891482-10891501 | None:intergenic | 45.0% | |
| TACCAAAGGGGTTTGAAGAG+AGG | - | chr4.4:10892214-10892233 | MS.gene28057:CDS | 45.0% | |
| TGAAGGTGGTGTTTCACGTA+TGG | - | chr4.4:10892596-10892615 | MS.gene28057:CDS | 45.0% | |
| TGGTGTTTCACGTATGGAAC+TGG | - | chr4.4:10892602-10892621 | MS.gene28057:CDS | 45.0% | |
| TTGGAGTCAAAGGGATGAGT+TGG | - | chr4.4:10892461-10892480 | MS.gene28057:CDS | 45.0% | |
| ! | CCTTCTAGAGAAGGAACTTC+TGG | + | chr4.4:10891784-10891803 | None:intergenic | 45.0% |
| ! | TTTGCATTTGGGTTTGGAGG+AGG | + | chr4.4:10891493-10891512 | None:intergenic | 45.0% |
| !! | ATGATTTTGGGTCCCAACCT+TGG | + | chr4.4:10891420-10891439 | None:intergenic | 45.0% |
| !! | GGAAGTGCTTAAGGTTGGTT+TGG | - | chr4.4:10892428-10892447 | MS.gene28057:CDS | 45.0% |
| !! | GTTACGGAAGTGCTTAAGGT+TGG | - | chr4.4:10892423-10892442 | MS.gene28057:CDS | 45.0% |
| !!! | CTAGGCATTTTAGCTTGGAG+TGG | - | chr4.4:10892004-10892023 | MS.gene28057:CDS | 45.0% |
| ACCCTCTCTTCAAACCCCTT+TGG | + | chr4.4:10892219-10892238 | None:intergenic | 50.0% | |
| CAAGCCATAGTTCGTGTCCA+AGG | - | chr4.4:10891400-10891419 | MS.gene28057:intron | 50.0% | |
| CCAACCTTGGACACGAACTA+TGG | + | chr4.4:10891407-10891426 | None:intergenic | 50.0% | |
| CCATAGTTCGTGTCCAAGGT+TGG | - | chr4.4:10891404-10891423 | MS.gene28057:intron | 50.0% | |
| GGAGGAGGTGAAACAAAGGT+TGG | + | chr4.4:10891478-10891497 | None:intergenic | 50.0% | |
| TGCATAGGCCATGCTGCTAT+TGG | + | chr4.4:10892375-10892394 | None:intergenic | 50.0% | |
| ! | GAGTCAAAGGGATGAGTTGG+TGG | - | chr4.4:10892464-10892483 | MS.gene28057:CDS | 50.0% |
| ! | GGTGGAGAAGTTGGTTGAGA+TGG | + | chr4.4:10891315-10891334 | None:intergenic | 50.0% |
| !! | CTACTACCACTTGGTGGGTT+TGG | + | chr4.4:10891267-10891286 | None:intergenic | 50.0% |
| !! | CTAGGTTGGTCAGAGTGCAT+AGG | + | chr4.4:10892390-10892409 | None:intergenic | 50.0% |
| !! | GTGGGTTTGGTGGATGACTT+TGG | + | chr4.4:10891254-10891273 | None:intergenic | 50.0% |
| !! | TCAAAGGGATGAGTTGGTGG+TGG | - | chr4.4:10892467-10892486 | MS.gene28057:CDS | 50.0% |
| !! | TGACTTTGGTGCCCTTGCTA+AGG | + | chr4.4:10891240-10891259 | None:intergenic | 50.0% |
| CATCCACCAAACCCACCAAG+TGG | - | chr4.4:10891258-10891277 | MS.gene28057:CDS | 55.0% | |
| GACGAGAGAGGTGGAGAAGT+TGG | + | chr4.4:10891324-10891343 | None:intergenic | 55.0% | |
| GTTGTGCCTTTCCCAGCACA+AGG | - | chr4.4:10891289-10891308 | MS.gene28057:CDS | 55.0% | |
| !! | AGATGGCCTTGTGCTGGGAA+AGG | + | chr4.4:10891298-10891317 | None:intergenic | 55.0% |
| !! | CTACCACTTGGTGGGTTTGG+TGG | + | chr4.4:10891264-10891283 | None:intergenic | 55.0% |
| !! | GGTTGAGATGGCCTTGTGCT+GGG | + | chr4.4:10891303-10891322 | None:intergenic | 55.0% |
| !! | GTTGGTGGTGGCTTCTGTTG+TGG | - | chr4.4:10892479-10892498 | MS.gene28057:CDS | 55.0% |
| !! | TGGTTGAGATGGCCTTGTGC+TGG | + | chr4.4:10891304-10891323 | None:intergenic | 55.0% |
| GAGAGATTGGGCCCCGCAAT+TGG | - | chr4.4:10892266-10892285 | MS.gene28057:CDS | 60.0% | |
| !! | TGGGGGTGCCAATAGCAGCA+TGG | - | chr4.4:10892364-10892383 | MS.gene28057:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 10891178 | 10892653 | 10891178 | ID=MS.gene28057 |
| chr4.4 | mRNA | 10891178 | 10892653 | 10891178 | ID=MS.gene28057.t1;Parent=MS.gene28057 |
| chr4.4 | exon | 10891940 | 10892653 | 10891940 | ID=MS.gene28057.t1.exon1;Parent=MS.gene28057.t1 |
| chr4.4 | CDS | 10891940 | 10892653 | 10891940 | ID=cds.MS.gene28057.t1;Parent=MS.gene28057.t1 |
| chr4.4 | exon | 10891178 | 10891372 | 10891178 | ID=MS.gene28057.t1.exon2;Parent=MS.gene28057.t1 |
| chr4.4 | CDS | 10891178 | 10891372 | 10891178 | ID=cds.MS.gene28057.t1;Parent=MS.gene28057.t1 |
| Gene Sequence |
| Protein sequence |
