Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29004.t1 | XP_013460987.1 | 92.6 | 216 | 15 | 1 | 1 | 215 | 1 | 216 | 2.50E-106 | 394.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29004.t1 | Q0WWT7 | 60.6 | 218 | 83 | 1 | 1 | 215 | 1 | 218 | 4.6e-72 | 272.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29004.t1 | A0A072UZZ1 | 92.6 | 216 | 15 | 1 | 1 | 215 | 1 | 216 | 1.8e-106 | 394.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene29004 | 0.846058 | 2.76E-59 | -1.69E-46 |
| MS.gene049427 | MS.gene29004 | 0.827457 | 1.55E-54 | -1.69E-46 |
| MS.gene049614 | MS.gene29004 | 0.829625 | 4.64E-55 | -1.69E-46 |
| MS.gene050076 | MS.gene29004 | 0.805932 | 1.05E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene29004 | 0.826408 | 2.76E-54 | -1.69E-46 |
| MS.gene050767 | MS.gene29004 | 0.841494 | 4.59E-58 | -1.69E-46 |
| MS.gene050770 | MS.gene29004 | 0.841636 | 4.21E-58 | -1.69E-46 |
| MS.gene050783 | MS.gene29004 | 0.831061 | 2.07E-55 | -1.69E-46 |
| MS.gene05101 | MS.gene29004 | 0.860993 | 1.40E-63 | -1.69E-46 |
| MS.gene051387 | MS.gene29004 | 0.823099 | 1.66E-53 | -1.69E-46 |
| MS.gene051877 | MS.gene29004 | 0.80067 | 1.29E-48 | -1.69E-46 |
| MS.gene052078 | MS.gene29004 | 0.809589 | 1.76E-50 | -1.69E-46 |
| MS.gene052271 | MS.gene29004 | 0.811189 | 7.93E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene29004 | 0.820817 | 5.61E-53 | -1.69E-46 |
| MS.gene052322 | MS.gene29004 | 0.800179 | 1.63E-48 | -1.69E-46 |
| MS.gene052326 | MS.gene29004 | 0.867475 | 1.33E-65 | -1.69E-46 |
| MS.gene053322 | MS.gene29004 | 0.842823 | 2.04E-58 | -1.69E-46 |
| MS.gene053813 | MS.gene29004 | 0.816857 | 4.46E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene29004 | 0.801856 | 7.39E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene29004 | 0.845663 | 3.53E-59 | -1.69E-46 |
| MS.gene05455 | MS.gene29004 | 0.85344 | 2.39E-61 | -1.69E-46 |
| MS.gene054802 | MS.gene29004 | 0.886017 | 4.93E-72 | -1.69E-46 |
| MS.gene054803 | MS.gene29004 | 0.885018 | 1.17E-71 | -1.69E-46 |
| MS.gene054804 | MS.gene29004 | 0.883401 | 4.63E-71 | -1.69E-46 |
| MS.gene055277 | MS.gene29004 | 0.844104 | 9.29E-59 | -1.69E-46 |
| MS.gene055390 | MS.gene29004 | 0.840957 | 6.36E-58 | -1.69E-46 |
| MS.gene055397 | MS.gene29004 | 0.813775 | 2.16E-51 | -1.69E-46 |
| MS.gene055412 | MS.gene29004 | 0.816868 | 4.43E-52 | -1.69E-46 |
| MS.gene055428 | MS.gene29004 | 0.813056 | 3.10E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene29004 | 0.829877 | 4.02E-55 | -1.69E-46 |
| MS.gene055647 | MS.gene29004 | 0.832855 | 7.45E-56 | -1.69E-46 |
| MS.gene055930 | MS.gene29004 | 0.821551 | 3.80E-53 | -1.69E-46 |
| MS.gene056191 | MS.gene29004 | 0.813136 | 2.98E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene29004 | 0.802903 | 4.50E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene29004 | 0.800641 | 1.31E-48 | -1.69E-46 |
| MS.gene056452 | MS.gene29004 | 0.870415 | 1.49E-66 | -1.69E-46 |
| MS.gene056935 | MS.gene29004 | 0.80053 | 1.38E-48 | -1.69E-46 |
| MS.gene056942 | MS.gene29004 | 0.804666 | 1.94E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene29004 | 0.867675 | 1.15E-65 | -1.69E-46 |
| MS.gene057123 | MS.gene29004 | 0.819661 | 1.03E-52 | -1.69E-46 |
| MS.gene057129 | MS.gene29004 | 0.811458 | 6.93E-51 | -1.69E-46 |
| MS.gene057146 | MS.gene29004 | 0.833503 | 5.14E-56 | -1.69E-46 |
| MS.gene057416 | MS.gene29004 | 0.804629 | 1.97E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene29004 | 0.807838 | 4.16E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene29004 | 0.835434 | 1.68E-56 | -1.69E-46 |
| MS.gene058323 | MS.gene29004 | 0.815184 | 1.05E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene29004 | 0.866055 | 3.77E-65 | -1.69E-46 |
| MS.gene05907 | MS.gene29004 | 0.82887 | 7.07E-55 | -1.69E-46 |
| MS.gene059326 | MS.gene29004 | 0.814869 | 1.24E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene29004 | 0.852295 | 5.07E-61 | -1.69E-46 |
| MS.gene059676 | MS.gene29004 | 0.800162 | 1.64E-48 | -1.69E-46 |
| MS.gene059688 | MS.gene29004 | 0.80072 | 1.26E-48 | -1.69E-46 |
| MS.gene059960 | MS.gene29004 | 0.864796 | 9.40E-65 | -1.69E-46 |
| MS.gene060193 | MS.gene29004 | 0.811626 | 6.37E-51 | -1.69E-46 |
| MS.gene060559 | MS.gene29004 | 0.807708 | 4.43E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene29004 | 0.866726 | 2.31E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29004.t1 | MTR_3g075540 | 95.370 | 216 | 9 | 1 | 1 | 215 | 1 | 216 | 1.22e-152 | 425 |
| MS.gene29004.t1 | MTR_4g015860 | 36.957 | 138 | 86 | 1 | 79 | 215 | 52 | 189 | 7.39e-24 | 95.1 |
| MS.gene29004.t1 | MTR_7g092820 | 26.923 | 130 | 95 | 0 | 84 | 213 | 46 | 175 | 4.45e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29004.t1 | AT4G24750 | 61.644 | 219 | 79 | 3 | 1 | 215 | 1 | 218 | 9.12e-97 | 283 |
| MS.gene29004.t1 | AT3G08920 | 36.496 | 137 | 86 | 1 | 79 | 214 | 39 | 175 | 3.99e-21 | 87.8 |
| MS.gene29004.t1 | AT2G42220 | 30.178 | 169 | 96 | 3 | 45 | 213 | 31 | 177 | 1.16e-17 | 79.0 |
Find 57 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGCTTCCCATCTCTTTC+TGG | 0.133810 | 3.1:-62678957 | None:intergenic |
| AACAATTAGTTCTGCATCTT+TGG | 0.158493 | 3.1:-62680474 | None:intergenic |
| CCGGTTACACAAACCTGTTT+TGG | 0.266059 | 3.1:+62680794 | MS.gene29004:CDS |
| ACAATTAGTTCTGCATCTTT+GGG | 0.290043 | 3.1:-62680473 | None:intergenic |
| CCAAAACAGGTTTGTGTAAC+CGG | 0.332922 | 3.1:-62680794 | None:intergenic |
| GAGCTCACCTCAGTCCCTTC+TGG | 0.353437 | 3.1:-62680502 | None:intergenic |
| CCATCATCGACATTGAATAT+TGG | 0.361064 | 3.1:-62680165 | None:intergenic |
| GGGAACTTCTCCGCAACTTT+GGG | 0.366253 | 3.1:-62680452 | None:intergenic |
| TTCAACTAGACAGAAGTCTA+TGG | 0.385292 | 3.1:+62678782 | MS.gene29004:CDS |
| AACCTTGTTGTGTTCATTTG+AGG | 0.419393 | 3.1:-62679749 | None:intergenic |
| GGGGAACTTCTCCGCAACTT+TGG | 0.424721 | 3.1:-62680453 | None:intergenic |
| AGCCTCCTTGAACCCAAAAC+AGG | 0.429532 | 3.1:-62680807 | None:intergenic |
| CTGCATATCCAGCTTCCCTT+GGG | 0.434527 | 3.1:-62679690 | None:intergenic |
| AGAAGAAGGACGGTGTTGTA+AGG | 0.442401 | 3.1:-62678760 | None:intergenic |
| GTAGGTGTTGGTGTTGGAAT+TGG | 0.442509 | 3.1:-62678697 | None:intergenic |
| ACTGCATATCCAGCTTCCCT+TGG | 0.444447 | 3.1:-62679691 | None:intergenic |
| ATTGAAGCAAGTCAGGGATA+TGG | 0.444913 | 3.1:+62678928 | MS.gene29004:CDS |
| ACCTTGTTGTGTTCATTTGA+GGG | 0.445197 | 3.1:-62679748 | None:intergenic |
| ACAAGCCCCTTCTTGATGTT+CGG | 0.445700 | 3.1:+62679725 | MS.gene29004:CDS |
| GACATTGAATATTGGAATCC+AGG | 0.449682 | 3.1:-62680157 | None:intergenic |
| GTTCTTACCCCAAGGGAAGC+TGG | 0.464181 | 3.1:+62679682 | MS.gene29004:CDS |
| CAGAAAGAGATGGGAAGCTC+TGG | 0.490533 | 3.1:+62678958 | MS.gene29004:CDS |
| CCAATATTCAATGTCGATGA+TGG | 0.493249 | 3.1:+62680165 | MS.gene29004:CDS |
| GGAATTGGTAACAGTGATTG+TGG | 0.521328 | 3.1:-62678682 | None:intergenic |
| GGCTGCTGCCAGAAAGAGAT+GGG | 0.527321 | 3.1:+62678949 | MS.gene29004:CDS |
| GAATTGGTAACAGTGATTGT+GGG | 0.531813 | 3.1:-62678681 | None:intergenic |
| CTTTGATGCTGCTGAAGAAG+AGG | 0.535812 | 3.1:+62680828 | MS.gene29004:CDS |
| TAGATGTTGGAACCATTCCC+AGG | 0.536270 | 3.1:+62680190 | MS.gene29004:CDS |
| GGTAACAGTGATTGTGGGAA+GGG | 0.538152 | 3.1:-62678676 | None:intergenic |
| TGTTATGAACAGGAGGTTGG+TGG | 0.549582 | 3.1:+62680302 | MS.gene29004:intron |
| GTCGATGATGGTCTAGATGT+TGG | 0.552986 | 3.1:+62680177 | MS.gene29004:CDS |
| CTAATTGTTGCATGCCAGAA+GGG | 0.553912 | 3.1:+62680488 | MS.gene29004:CDS |
| TGGTAACAGTGATTGTGGGA+AGG | 0.563931 | 3.1:-62678677 | None:intergenic |
| TTGAGGGCCGAACATCAAGA+AGG | 0.565178 | 3.1:-62679732 | None:intergenic |
| CATGGGTGAAAGGTTCAACC+TGG | 0.567974 | 3.1:+62680139 | MS.gene29004:CDS |
| TTCTGTCTAGTTGAAGAAGA+AGG | 0.568939 | 3.1:-62678774 | None:intergenic |
| CAATTAGTTCTGCATCTTTG+GGG | 0.572471 | 3.1:-62680472 | None:intergenic |
| TGAACAGGAGGTTGGTGGAG+TGG | 0.574736 | 3.1:+62680307 | MS.gene29004:intron |
| AGAAATGTAGGTGTTGGTGT+TGG | 0.575274 | 3.1:-62678703 | None:intergenic |
| ACTTAGAGAAATGTAGGTGT+TGG | 0.580172 | 3.1:-62678709 | None:intergenic |
| AAATTAAGGTTCTTACCCCA+AGG | 0.581254 | 3.1:+62679674 | MS.gene29004:CDS |
| TGAGGGCCGAACATCAAGAA+GGG | 0.582614 | 3.1:-62679731 | None:intergenic |
| ACTAATTGTTGCATGCCAGA+AGG | 0.587081 | 3.1:+62680487 | MS.gene29004:CDS |
| AGCGGCACTTAGAGAAATGT+AGG | 0.593525 | 3.1:-62678715 | None:intergenic |
| AATTAAGGTTCTTACCCCAA+GGG | 0.596376 | 3.1:+62679675 | MS.gene29004:CDS |
| TGGCTGCTGCCAGAAAGAGA+TGG | 0.598638 | 3.1:+62678948 | MS.gene29004:CDS |
| TGATGTTATGAACAGGAGGT+TGG | 0.608404 | 3.1:+62680299 | MS.gene29004:intron |
| TGTGAACTACTATATAATGC+CGG | 0.608880 | 3.1:+62680775 | MS.gene29004:CDS |
| CTCGTTCTTACCCAAAGTTG+CGG | 0.625365 | 3.1:+62680442 | MS.gene29004:CDS |
| GAGGGCCGAACATCAAGAAG+GGG | 0.626090 | 3.1:-62679730 | None:intergenic |
| GTCTAGTTGAAGAAGAAGGA+CGG | 0.638770 | 3.1:-62678770 | None:intergenic |
| GCCCTCAAATGAACACAACA+AGG | 0.642119 | 3.1:+62679747 | MS.gene29004:CDS |
| GAGTGAGGCATAATTAGTAG+CGG | 0.656820 | 3.1:-62678733 | None:intergenic |
| TGCATATCCAGCTTCCCTTG+GGG | 0.664362 | 3.1:-62679689 | None:intergenic |
| GTGTTGTAAGGAAGAGAGTG+AGG | 0.671205 | 3.1:-62678748 | None:intergenic |
| TTGCATGCCAGAAGGGACTG+AGG | 0.715447 | 3.1:+62680495 | MS.gene29004:CDS |
| TACTTGTCAAAAGACAGTGT+AGG | 0.751162 | 3.1:-62680334 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAGAATCAAATGTATA+AGG | - | chr3.1:62679991-62680010 | None:intergenic | 15.0% |
| !!! | CATTTCATTTTTTAAATCTT+TGG | + | chr3.1:62680636-62680655 | MS.gene29004:intron | 15.0% |
| !!! | TTTTAAACATCTTATTGTTA+TGG | + | chr3.1:62679883-62679902 | MS.gene29004:intron | 15.0% |
| !! | AGACAAATATTAGAAATTAG+TGG | + | chr3.1:62679412-62679431 | MS.gene29004:intron | 20.0% |
| !! | TATAAATGTAATGAAAGAGT+CGG | - | chr3.1:62680255-62680274 | None:intergenic | 20.0% |
| !!! | AAAATCACAAATTTTGCTAT+GGG | + | chr3.1:62680213-62680232 | MS.gene29004:CDS | 20.0% |
| !!! | AATCTAATAGTGTTTGTTAT+TGG | + | chr3.1:62679540-62679559 | MS.gene29004:intron | 20.0% |
| !!! | CAATTACCAAATACATTTTA+AGG | - | chr3.1:62680586-62680605 | None:intergenic | 20.0% |
| !!! | CTTAAAATGTATTTGGTAAT+TGG | + | chr3.1:62680584-62680603 | MS.gene29004:intron | 20.0% |
| ! | AGAAAATGAAATGCTAGTTA+TGG | + | chr3.1:62679169-62679188 | MS.gene29004:intron | 25.0% |
| ! | ATTCAATTCAACCAAAAACT+AGG | - | chr3.1:62679299-62679318 | None:intergenic | 25.0% |
| ! | CCATTTCCTTAAAATGTATT+TGG | + | chr3.1:62680577-62680596 | MS.gene29004:intron | 25.0% |
| ! | TAAGGTTTACATTGTCTATT+TGG | - | chr3.1:62680714-62680733 | None:intergenic | 25.0% |
| ! | TATATCACCAACAAATATCT+AGG | - | chr3.1:62679330-62679349 | None:intergenic | 25.0% |
| ! | TTCTTATCCTAGATATTTGT+TGG | + | chr3.1:62679320-62679339 | MS.gene29004:intron | 25.0% |
| ! | TTGGTTCAATCAAATTATTG+TGG | + | chr3.1:62680655-62680674 | MS.gene29004:intron | 25.0% |
| !! | ACTTGTTAAATGATTAGAGA+TGG | - | chr3.1:62680686-62680705 | None:intergenic | 25.0% |
| !! | GAAAATCACAAATTTTGCTA+TGG | + | chr3.1:62680212-62680231 | MS.gene29004:CDS | 25.0% |
| !!! | CCAAATACATTTTAAGGAAA+TGG | - | chr3.1:62680580-62680599 | None:intergenic | 25.0% |
| !!! | GTTGGTGATATAGATTATTT+GGG | + | chr3.1:62679338-62679357 | MS.gene29004:intron | 25.0% |
| !!! | TGTTGGTGATATAGATTATT+TGG | + | chr3.1:62679337-62679356 | MS.gene29004:intron | 25.0% |
| !!! | TTGGATGACTGTATTTTAAT+GGG | + | chr3.1:62679615-62679634 | MS.gene29004:intron | 25.0% |
| !!! | TTTGGATGACTGTATTTTAA+TGG | + | chr3.1:62679614-62679633 | MS.gene29004:intron | 25.0% |
| AAATGTGACTCAAAACACAA+GGG | - | chr3.1:62680621-62680640 | None:intergenic | 30.0% | |
| AACATCTTATTGTTATGGTC+AGG | + | chr3.1:62679888-62679907 | MS.gene29004:intron | 30.0% | |
| AAGAAACGAAAATCTTCACT+TGG | - | chr3.1:62679079-62679098 | None:intergenic | 30.0% | |
| AAGATCACAACAATAATGTG+TGG | - | chr3.1:62680091-62680110 | None:intergenic | 30.0% | |
| TATGTGCAAGTGCAATATAT+TGG | - | chr3.1:62679812-62679831 | None:intergenic | 30.0% | |
| TGTGAACTACTATATAATGC+CGG | + | chr3.1:62680775-62680794 | MS.gene29004:CDS | 30.0% | |
| TTTAGTTAGTTACCTCTAGT+AGG | + | chr3.1:62679835-62679854 | MS.gene29004:intron | 30.0% | |
| ! | AGCAAAATTTGTGATTTTCC+TGG | - | chr3.1:62680211-62680230 | None:intergenic | 30.0% |
| ! | ATGTGTTTTCACAGAGTAAA+TGG | + | chr3.1:62679271-62679290 | MS.gene29004:intron | 30.0% |
| ! | ATTTTGAATTGAAGCAAGTC+AGG | + | chr3.1:62678921-62678940 | MS.gene29004:CDS | 30.0% |
| ! | GATTATTTGGGATTTCTCAA+AGG | + | chr3.1:62679350-62679369 | MS.gene29004:intron | 30.0% |
| ! | GCAAAATTTGTGATTTTCCT+GGG | - | chr3.1:62680210-62680229 | None:intergenic | 30.0% |
| ! | TTTTGAATTGAAGCAAGTCA+GGG | + | chr3.1:62678922-62678941 | MS.gene29004:CDS | 30.0% |
| !! | AACAATTAGTTCTGCATCTT+TGG | - | chr3.1:62680477-62680496 | None:intergenic | 30.0% |
| !! | ACAATTAGTTCTGCATCTTT+GGG | - | chr3.1:62680476-62680495 | None:intergenic | 30.0% |
| !! | TTTGACTTGATGTTATGAAC+AGG | + | chr3.1:62680292-62680311 | MS.gene29004:intron | 30.0% |
| !!! | TGGATGACTGTATTTTAATG+GGG | + | chr3.1:62679616-62679635 | MS.gene29004:intron | 30.0% |
| !!! | TTGAAGGAGTTTTAAGCAAT+AGG | - | chr3.1:62679467-62679486 | None:intergenic | 30.0% |
| AAATTAAGGTTCTTACCCCA+AGG | + | chr3.1:62679674-62679693 | MS.gene29004:CDS | 35.0% | |
| AATGTGACTCAAAACACAAG+GGG | - | chr3.1:62680620-62680639 | None:intergenic | 35.0% | |
| AATTAAGGTTCTTACCCCAA+GGG | + | chr3.1:62679675-62679694 | MS.gene29004:CDS | 35.0% | |
| ACAACATTCTTCTTCTGCAA+AGG | - | chr3.1:62678878-62678897 | None:intergenic | 35.0% | |
| ACTTAGAGAAATGTAGGTGT+TGG | - | chr3.1:62678712-62678731 | None:intergenic | 35.0% | |
| ATCAGGTTCAGAACAACATA+AGG | - | chr3.1:62680732-62680751 | None:intergenic | 35.0% | |
| ATTCGATCCAGAAACTAACA+TGG | - | chr3.1:62679438-62679457 | None:intergenic | 35.0% | |
| CCAATATTCAATGTCGATGA+TGG | + | chr3.1:62680165-62680184 | MS.gene29004:CDS | 35.0% | |
| CCATCATCGACATTGAATAT+TGG | - | chr3.1:62680168-62680187 | None:intergenic | 35.0% | |
| GAAATGTGACTCAAAACACA+AGG | - | chr3.1:62680622-62680641 | None:intergenic | 35.0% | |
| GACATTGAATATTGGAATCC+AGG | - | chr3.1:62680160-62680179 | None:intergenic | 35.0% | |
| GCTCAGGGATGAAAAAATTA+AGG | + | chr3.1:62679660-62679679 | MS.gene29004:intron | 35.0% | |
| GTGAGCTCTATACATTCAAT+AGG | + | chr3.1:62680517-62680536 | MS.gene29004:intron | 35.0% | |
| TACTTGTCAAAAGACAGTGT+AGG | - | chr3.1:62680337-62680356 | None:intergenic | 35.0% | |
| TTCAACTAGACAGAAGTCTA+TGG | + | chr3.1:62678782-62678801 | MS.gene29004:CDS | 35.0% | |
| TTCTGTCTAGTTGAAGAAGA+AGG | - | chr3.1:62678777-62678796 | None:intergenic | 35.0% | |
| ! | AACCTTGTTGTGTTCATTTG+AGG | - | chr3.1:62679752-62679771 | None:intergenic | 35.0% |
| ! | ACCTTGTTGTGTTCATTTGA+GGG | - | chr3.1:62679751-62679770 | None:intergenic | 35.0% |
| ! | ATTTGTGATTTTCCTGGGAA+TGG | - | chr3.1:62680205-62680224 | None:intergenic | 35.0% |
| ! | GAATTGGTAACAGTGATTGT+GGG | - | chr3.1:62678684-62678703 | None:intergenic | 35.0% |
| ! | TCATTTTCTCTCGACCATAA+TGG | - | chr3.1:62679158-62679177 | None:intergenic | 35.0% |
| ! | TTAGTTTCTGGATCGAATCT+GGG | + | chr3.1:62679440-62679459 | MS.gene29004:intron | 35.0% |
| !! | AGTAAATGGAGCCTAGTTTT+TGG | + | chr3.1:62679285-62679304 | MS.gene29004:intron | 35.0% |
| !! | CAATTAGTTCTGCATCTTTG+GGG | - | chr3.1:62680475-62680494 | None:intergenic | 35.0% |
| !! | GCTCTTTTTGCATGTTTTGA+AGG | + | chr3.1:62680116-62680135 | MS.gene29004:intron | 35.0% |
| !!! | GGATGACTGTATTTTAATGG+GGG | + | chr3.1:62679617-62679636 | MS.gene29004:intron | 35.0% |
| !!! | TTTGCATGTTTTGAAGGCAT+GGG | + | chr3.1:62680122-62680141 | MS.gene29004:intron | 35.0% |
| !!! | TTTTGCATGTTTTGAAGGCA+TGG | + | chr3.1:62680121-62680140 | MS.gene29004:intron | 35.0% |
| ACTAATTGTTGCATGCCAGA+AGG | + | chr3.1:62680487-62680506 | MS.gene29004:CDS | 40.0% | |
| ACTAGACAGAAGTCTATGGT+TGG | + | chr3.1:62678786-62678805 | MS.gene29004:intron | 40.0% | |
| ACTCTTGAAGCGAACCATTA+TGG | + | chr3.1:62679141-62679160 | MS.gene29004:intron | 40.0% | |
| AGTTAGTTACCTCTAGTAGG+AGG | + | chr3.1:62679838-62679857 | MS.gene29004:intron | 40.0% | |
| ATTGAAGCAAGTCAGGGATA+TGG | + | chr3.1:62678928-62678947 | MS.gene29004:CDS | 40.0% | |
| CAAGTGCAATATATTGGCCA+AGG | - | chr3.1:62679806-62679825 | None:intergenic | 40.0% | |
| CCAAAACAGGTTTGTGTAAC+CGG | - | chr3.1:62680797-62680816 | None:intergenic | 40.0% | |
| CTAATTGTTGCATGCCAGAA+GGG | + | chr3.1:62680488-62680507 | MS.gene29004:CDS | 40.0% | |
| CTGTCATGAGTGATTGATCT+TGG | + | chr3.1:62679926-62679945 | MS.gene29004:intron | 40.0% | |
| GACTTGATGTTATGAACAGG+AGG | + | chr3.1:62680295-62680314 | MS.gene29004:intron | 40.0% | |
| GAGTGAGGCATAATTAGTAG+CGG | - | chr3.1:62678736-62678755 | None:intergenic | 40.0% | |
| GCTTTCAACAGTTACTACCA+AGG | - | chr3.1:62679953-62679972 | None:intergenic | 40.0% | |
| GGTAAGGTAAGAGACATTGA+AGG | - | chr3.1:62679483-62679502 | None:intergenic | 40.0% | |
| GTCTAGTTGAAGAAGAAGGA+CGG | - | chr3.1:62678773-62678792 | None:intergenic | 40.0% | |
| TAATGATCTGGCCAACAATC+AGG | - | chr3.1:62680749-62680768 | None:intergenic | 40.0% | |
| TGATGTTATGAACAGGAGGT+TGG | + | chr3.1:62680299-62680318 | MS.gene29004:intron | 40.0% | |
| TGGGATTTCTCAAAGGCTTT+GGG | + | chr3.1:62679357-62679376 | MS.gene29004:intron | 40.0% | |
| TTCACAAGCAGCTAATGATC+TGG | - | chr3.1:62680761-62680780 | None:intergenic | 40.0% | |
| TTGGGATTTCTCAAAGGCTT+TGG | + | chr3.1:62679356-62679375 | MS.gene29004:intron | 40.0% | |
| ! | CGGTTACACAAACCTGTTTT+GGG | + | chr3.1:62680795-62680814 | MS.gene29004:CDS | 40.0% |
| ! | GGAATTGGTAACAGTGATTG+TGG | - | chr3.1:62678685-62678704 | None:intergenic | 40.0% |
| ! | GTTAGTTTCTGGATCGAATC+TGG | + | chr3.1:62679439-62679458 | MS.gene29004:intron | 40.0% |
| ! | GTTGTTCTGAACCTGATTGT+TGG | + | chr3.1:62680735-62680754 | MS.gene29004:intron | 40.0% |
| ! | TTAGTGGCCATGTTAGTTTC+TGG | + | chr3.1:62679428-62679447 | MS.gene29004:intron | 40.0% |
| !! | AGAAATGTAGGTGTTGGTGT+TGG | - | chr3.1:62678706-62678725 | None:intergenic | 40.0% |
| !! | GCTCTTGCTTTTGTTTACCT+TGG | + | chr3.1:62679786-62679805 | MS.gene29004:intron | 40.0% |
| !!! | ACAAACCTGTTTTGGGTTCA+AGG | + | chr3.1:62680802-62680821 | MS.gene29004:CDS | 40.0% |
| AAAAGCAAGAGCTGCGTCAT+AGG | - | chr3.1:62679778-62679797 | None:intergenic | 45.0% | |
| ACAAGCCCCTTCTTGATGTT+CGG | + | chr3.1:62679725-62679744 | MS.gene29004:CDS | 45.0% | |
| AGCGGCACTTAGAGAAATGT+AGG | - | chr3.1:62678718-62678737 | None:intergenic | 45.0% | |
| AGTTTACTAAAGAGCCGCGT+AGG | - | chr3.1:62679516-62679535 | None:intergenic | 45.0% | |
| CGTGTTTGCTTTGTAGCTCA+GGG | + | chr3.1:62679645-62679664 | MS.gene29004:intron | 45.0% | |
| CTCGTTCTTACCCAAAGTTG+CGG | + | chr3.1:62680442-62680461 | MS.gene29004:CDS | 45.0% | |
| GAGTGATTGATCTTGGACCT+TGG | + | chr3.1:62679933-62679952 | MS.gene29004:intron | 45.0% | |
| GCCCTCAAATGAACACAACA+AGG | + | chr3.1:62679747-62679766 | MS.gene29004:CDS | 45.0% | |
| GGTAACAGTGATTGTGGGAA+GGG | - | chr3.1:62678679-62678698 | None:intergenic | 45.0% | |
| GTGTTGTAAGGAAGAGAGTG+AGG | - | chr3.1:62678751-62678770 | None:intergenic | 45.0% | |
| TAGATGTTGGAACCATTCCC+AGG | + | chr3.1:62680190-62680209 | MS.gene29004:CDS | 45.0% | |
| TAGTAGGAGGTGACAAGGAA+AGG | + | chr3.1:62679851-62679870 | MS.gene29004:intron | 45.0% | |
| TGGTAACAGTGATTGTGGGA+AGG | - | chr3.1:62678680-62678699 | None:intergenic | 45.0% | |
| TGTTATGAACAGGAGGTTGG+TGG | + | chr3.1:62680302-62680321 | MS.gene29004:intron | 45.0% | |
| ! | CCGGTTACACAAACCTGTTT+TGG | + | chr3.1:62680794-62680813 | MS.gene29004:CDS | 45.0% |
| ! | CTGCGATCTTCTTTTGCGTT+TGG | + | chr3.1:62679596-62679615 | MS.gene29004:intron | 45.0% |
| ! | GTCGATGATGGTCTAGATGT+TGG | + | chr3.1:62680177-62680196 | MS.gene29004:CDS | 45.0% |
| !! | AGAAGAAGGACGGTGTTGTA+AGG | - | chr3.1:62678763-62678782 | None:intergenic | 45.0% |
| !! | GTAGGTGTTGGTGTTGGAAT+TGG | - | chr3.1:62678700-62678719 | None:intergenic | 45.0% |
| !!! | AACCTGTTTTGGGTTCAAGG+AGG | + | chr3.1:62680805-62680824 | MS.gene29004:CDS | 45.0% |
| !!! | GTTTTGAAGGCATGGGTGAA+AGG | + | chr3.1:62680129-62680148 | MS.gene29004:intron | 45.0% |
| ACCTCTAGTAGGAGGTGACA+AGG | + | chr3.1:62679846-62679865 | MS.gene29004:intron | 50.0% | |
| ACTGCATATCCAGCTTCCCT+TGG | - | chr3.1:62679694-62679713 | None:intergenic | 50.0% | |
| AGCCTCCTTGAACCCAAAAC+AGG | - | chr3.1:62680810-62680829 | None:intergenic | 50.0% | |
| CAGAAAGAGATGGGAAGCTC+TGG | + | chr3.1:62678958-62678977 | MS.gene29004:CDS | 50.0% | |
| CAGAGCTTCCCATCTCTTTC+TGG | - | chr3.1:62678960-62678979 | None:intergenic | 50.0% | |
| CATGGGTGAAAGGTTCAACC+TGG | + | chr3.1:62680139-62680158 | MS.gene29004:CDS | 50.0% | |
| CTGCATATCCAGCTTCCCTT+GGG | - | chr3.1:62679693-62679712 | None:intergenic | 50.0% | |
| GCGTGTTTGCTTTGTAGCTC+AGG | + | chr3.1:62679644-62679663 | MS.gene29004:intron | 50.0% | |
| GGGAACTTCTCCGCAACTTT+GGG | - | chr3.1:62680455-62680474 | None:intergenic | 50.0% | |
| TCCTTGTCACCTCCTACTAG+AGG | - | chr3.1:62679850-62679869 | None:intergenic | 50.0% | |
| TGAGGGCCGAACATCAAGAA+GGG | - | chr3.1:62679734-62679753 | None:intergenic | 50.0% | |
| TGCATATCCAGCTTCCCTTG+GGG | - | chr3.1:62679692-62679711 | None:intergenic | 50.0% | |
| TTGAGGGCCGAACATCAAGA+AGG | - | chr3.1:62679735-62679754 | None:intergenic | 50.0% | |
| AAAGAGCCGCGTAGGTAGCT+CGG | - | chr3.1:62679508-62679527 | None:intergenic | 55.0% | |
| GAGGGCCGAACATCAAGAAG+GGG | - | chr3.1:62679733-62679752 | None:intergenic | 55.0% | |
| GGCTGCTGCCAGAAAGAGAT+GGG | + | chr3.1:62678949-62678968 | MS.gene29004:CDS | 55.0% | |
| GGGGAACTTCTCCGCAACTT+TGG | - | chr3.1:62680456-62680475 | None:intergenic | 55.0% | |
| GTTCTTACCCCAAGGGAAGC+TGG | + | chr3.1:62679682-62679701 | MS.gene29004:CDS | 55.0% | |
| TACCAACCGAGCTACCTACG+CGG | + | chr3.1:62679499-62679518 | MS.gene29004:intron | 55.0% | |
| TGGCTGCTGCCAGAAAGAGA+TGG | + | chr3.1:62678948-62678967 | MS.gene29004:CDS | 55.0% | |
| TTGCATGCCAGAAGGGACTG+AGG | + | chr3.1:62680495-62680514 | MS.gene29004:CDS | 55.0% | |
| ! | CGTAGGTAGCTCGGTTGGTA+AGG | - | chr3.1:62679499-62679518 | None:intergenic | 55.0% |
| !! | TGAACAGGAGGTTGGTGGAG+TGG | + | chr3.1:62680307-62680326 | MS.gene29004:intron | 55.0% |
| GAGCTCACCTCAGTCCCTTC+TGG | - | chr3.1:62680505-62680524 | None:intergenic | 60.0% | |
| AGCCGCGTAGGTAGCTCGGT+TGG | - | chr3.1:62679504-62679523 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 62678663 | 62680849 | 62678663 | ID=MS.gene29004 |
| chr3.1 | mRNA | 62678663 | 62680849 | 62678663 | ID=MS.gene29004.t1;Parent=MS.gene29004 |
| chr3.1 | exon | 62678663 | 62678803 | 62678663 | ID=MS.gene29004.t1.exon1;Parent=MS.gene29004.t1 |
| chr3.1 | CDS | 62678663 | 62678803 | 62678663 | ID=cds.MS.gene29004.t1;Parent=MS.gene29004.t1 |
| chr3.1 | exon | 62678884 | 62678979 | 62678884 | ID=MS.gene29004.t1.exon2;Parent=MS.gene29004.t1 |
| chr3.1 | CDS | 62678884 | 62678979 | 62678884 | ID=cds.MS.gene29004.t1;Parent=MS.gene29004.t1 |
| chr3.1 | exon | 62679661 | 62679768 | 62679661 | ID=MS.gene29004.t1.exon3;Parent=MS.gene29004.t1 |
| chr3.1 | CDS | 62679661 | 62679768 | 62679661 | ID=cds.MS.gene29004.t1;Parent=MS.gene29004.t1 |
| chr3.1 | exon | 62680138 | 62680234 | 62680138 | ID=MS.gene29004.t1.exon4;Parent=MS.gene29004.t1 |
| chr3.1 | CDS | 62680138 | 62680234 | 62680138 | ID=cds.MS.gene29004.t1;Parent=MS.gene29004.t1 |
| chr3.1 | exon | 62680314 | 62680353 | 62680314 | ID=MS.gene29004.t1.exon5;Parent=MS.gene29004.t1 |
| chr3.1 | CDS | 62680314 | 62680353 | 62680314 | ID=cds.MS.gene29004.t1;Parent=MS.gene29004.t1 |
| chr3.1 | exon | 62680442 | 62680516 | 62680442 | ID=MS.gene29004.t1.exon6;Parent=MS.gene29004.t1 |
| chr3.1 | CDS | 62680442 | 62680516 | 62680442 | ID=cds.MS.gene29004.t1;Parent=MS.gene29004.t1 |
| chr3.1 | exon | 62680762 | 62680849 | 62680762 | ID=MS.gene29004.t1.exon7;Parent=MS.gene29004.t1 |
| chr3.1 | CDS | 62680762 | 62680849 | 62680762 | ID=cds.MS.gene29004.t1;Parent=MS.gene29004.t1 |
| Gene Sequence |
| Protein sequence |
