AlfalfaGEDB | MS.gene31762

M. sativa cultivar XinJiangDaYe / MS.gene31762

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31762.t1	KEH40352.1	95.4	633	29	0	1	633	83	715	0.00E+00	1254.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31762.t1	P93604	53.4	341	153	4	266	602	294	632	1.3e-98	362.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31762.t1	A0A072VF19	95.4	633	29	0	1	633	83	715	0.0e+00	1254.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049259	MS.gene31762	0.807509	4.88E-50	-1.69E-46
MS.gene049634	MS.gene31762	0.813305	2.74E-51	-1.69E-46
MS.gene050216	MS.gene31762	-0.800327	1.52E-48	-1.69E-46
MS.gene050381	MS.gene31762	0.821193	4.60E-53	-1.69E-46
MS.gene050496	MS.gene31762	-0.808319	3.28E-50	-1.69E-46
MS.gene050504	MS.gene31762	-0.810147	1.33E-50	-1.69E-46
MS.gene050612	MS.gene31762	-0.811878	5.62E-51	-1.69E-46
MS.gene05079	MS.gene31762	0.801404	9.15E-49	-1.69E-46
MS.gene050868	MS.gene31762	-0.837871	4.02E-57	-1.69E-46
MS.gene050871	MS.gene31762	-0.833898	4.09E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene31762.t1	MTR_1g027680	95.419	633	29	0	1	633	83	715	1264
MS.gene31762.t1	MTR_1g027990	84.960	625	90	3	1	621	82	706	1093
MS.gene31762.t1	MTR_1g027070	50.311	644	282	13	1	620	79	708	585
MS.gene31762.t1	MTR_1g027140	47.085	686	283	14	1	626	81	746	573
MS.gene31762.t1	MTR_1g027050	45.442	702	279	14	1	621	67	745	569
MS.gene31762.t1	MTR_1g027030	47.214	682	280	14	1	621	82	744	562
MS.gene31762.t1	MTR_1g028280	48.947	617	263	13	1	595	71	657	556
MS.gene31762.t1	MTR_1g028280	49.246	597	252	13	1	595	71	618	538
MS.gene31762.t1	MTR_1g027440	50.085	589	244	16	62	630	28	586	537
MS.gene31762.t1	MTR_1g027830	47.656	640	258	14	1	626	91	667	537

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31762.t1	AT5G38240	48.547	344	156	7	261	598	226	554	1.71e-104	328
MS.gene31762.t1	AT4G18250	46.761	355	178	7	249	595	295	646	4.93e-104	330
MS.gene31762.t1	AT5G38240	48.974	341	153	7	261	595	272	597	6.64e-104	328
MS.gene31762.t1	AT5G38240	48.974	341	153	7	261	595	290	615	1.14e-103	328
MS.gene31762.t1	AT5G38280	49.844	321	155	5	299	615	320	638	1.02e-102	327
MS.gene31762.t1	AT5G38280	49.844	321	155	5	299	615	320	638	1.23e-102	327
MS.gene31762.t1	AT1G70250	47.025	353	170	8	252	595	403	747	2.20e-102	329
MS.gene31762.t1	AT5G38250	48.442	353	158	10	253	595	256	594	1.30e-101	322
MS.gene31762.t1	AT5G38260	43.864	383	208	6	248	626	259	638	8.01e-101	321
MS.gene31762.t1	AT1G67000	45.337	386	185	7	233	595	470	852	7.46e-100	325

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Find 125 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCCACGGTACGTTA+AGG	0.465626	1.1:+13556263	MS.gene31762:CDS
AAAATATATGAAATATCTCT+TGG	0.431147	1.1:+13557728	MS.gene31762:CDS
AAAGAAATCAAGAAGATGAC+TGG	0.501056	1.1:+13557413	MS.gene31762:CDS
AAAGCAATCTAAATCCTATA+AGG	0.359647	1.1:+13557381	MS.gene31762:CDS
AAAGCCTTGAATTGCCTCCA+AGG	0.536995	1.1:+13558266	MS.gene31762:CDS
AAAGCTGATGTATACAGCTT+TGG	0.417793	1.1:+13557986	MS.gene31762:CDS
AAAGGATCAACTCCTTCTTT+AGG	0.267953	1.1:-13557695	None:intergenic
AAAGTAGTTGAGATGCTTGA+AGG	0.480976	1.1:+13558235	MS.gene31762:CDS
AAATCTAACTCCTATGAATA+AGG	0.214119	1.1:-13557264	None:intergenic
AAATTAGGTCAAGGAGGTTT+TGG	0.314763	1.1:+13557449	MS.gene31762:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAATCAAGAAGATGAC+TGG	+	chr1.1:13557413-13557432	MS.gene31762:CDS	30.0%
AACATGATGTATTCTTCCAA+TGG	-	chr1.1:13557579-13557598	None:intergenic	30.0%
ACATTATCTTTCACAATCTC+CGG	-	chr1.1:13556432-13556451	None:intergenic	30.0%
AGAGAGAGAGATTGAAATAA+TGG	+	chr1.1:13558114-13558133	MS.gene31762:CDS	30.0%
ATTCATCGGATGATAATTGA+TGG	+	chr1.1:13556465-13556484	MS.gene31762:CDS	30.0%
CAAATCCAATAAAAGATCCA+CGG	+	chr1.1:13556253-13556272	MS.gene31762:CDS	30.0%
CACATTTAGTACAAGACAAT+TGG	+	chr1.1:13557181-13557200	MS.gene31762:CDS	30.0%
CTTAGCTAAAAGGATGTTTA+TGG	+	chr1.1:13558162-13558181	MS.gene31762:CDS	30.0%
TAAATCAGATTGAAACATGC+AGG	+	chr1.1:13557143-13557162	MS.gene31762:intron	30.0%
TACAATTTCATTAAGTGACG+CGG	+	chr1.1:13556077-13556096	MS.gene31762:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	13556030	13558408	13556030	ID=MS.gene31762
chr1.1	mRNA	13556030	13558408	13556030	ID=MS.gene31762.t1;Parent=MS.gene31762
chr1.1	exon	13556030	13556630	13556030	ID=MS.gene31762.t1.exon1;Parent=MS.gene31762.t1
chr1.1	CDS	13556030	13556630	13556030	ID=cds.MS.gene31762.t1;Parent=MS.gene31762.t1
chr1.1	exon	13556816	13556848	13556816	ID=MS.gene31762.t1.exon2;Parent=MS.gene31762.t1
chr1.1	CDS	13556816	13556848	13556816	ID=cds.MS.gene31762.t1;Parent=MS.gene31762.t1
chr1.1	exon	13556978	13557001	13556978	ID=MS.gene31762.t1.exon3;Parent=MS.gene31762.t1
chr1.1	CDS	13556978	13557001	13556978	ID=cds.MS.gene31762.t1;Parent=MS.gene31762.t1
chr1.1	exon	13557165	13558408	13557165	ID=MS.gene31762.t1.exon4;Parent=MS.gene31762.t1
chr1.1	CDS	13557165	13558408	13557165	ID=cds.MS.gene31762.t1;Parent=MS.gene31762.t1

Gene Sequence

>MS.gene31762

ATGTTCTCCGGGAAATACTATGTACAACACATTGATTACAAGAGATTTACAATTTCATTAAGTGACGCGGGTGCAGTGGAAGACAGTAATTGCTCTTTCATTCCACGGTACTTTTTATATGATCGAAGTTTTAACAATGTTCTTTTTGGCGAAGACAATTTTGGATCCGAGCCGTTCATTCTGGATCCTATAAATCCATTGAGAATAGCATATTTCAATTGTTCAAATCCAATAAAAGATCCACGGTACGTTAAGGTGGACATGAGTCGTTGTAGCACACATGGGAATAGCAGTACTAATCATGTGTATGCTGTTTTGGAACCATCATTGTTTGAGTATCGTGTTGAGGATATTAAGGTTGGGTGTGATTTTATGGTGGCTACGTTGGCTAAGGCACAACCGGAGATTGTGAAAGATAATGTTTCATACGATGAGATTCATCGGATGATAATTGATGGATTTGAGGTTTCTTGGTTGCCTGTGATTTGTGAAGATAGATGTGGAAAGGGAACAAGTTGTAAGGTTGTTGATGAAGATAGTGGAGAAGTTCAATGTAATAAGCAATTATGTCATTATGCTTACCAAACAACTGATAAGTGTGGTACGTATGTTTGGCACATGCCACTTTCTGACTTTCTAAGTAGTTTGATTATGATTTCAAGAAGATTATAACTGAAATTCTCTCAAACAGACATAATTTACTTATACCAGTAAATGTTTAATTGTTGGTCCATGTAAGTCTTTTGAATCATAAGCTAACTATATTATTGTTTTGTGGTGTTTCAGAACTTCAAGACCAGATATTTGGTTATACTCGTGGTATGGATTAATTTCCTTTATTGTTTTTCTCCTCCAACATTTCCCTTGTTTCTCTATTAAATATCTACCATTAAAATATATATGTATAATTTGATGGACTTATTTACTTTTATTTTCTGTTTTTTGCAGCTTATCTTAGAGGCATCTTTATTGGTAAGAACCTTCTACTTTTTTGAACAAAGAAGCTTGTACTTTTTTTTTTTTTTTTTGGTTTTGAGAAGCTTGTACTTATTCTGTGATACATTAATTTGAGTCATATACAAATTGGTATCATAATTTACACTTGAATAAAACTAAATCAGATTGAAACATGCAGGACTTGGAAGTAGAATCACATTTAGTACAAGACAATTGGACAATCCAGTTGGACTAGAATACTTCGATGGAGGAATAATTATAGGAAGAAATGTTATTCCCTTATTCATAGGAGTTAGATTTGTATTTGGTGTTATAGTTCTACTTGTGCTATTTATCTATAAATGGAGAAGGAGACATTTATCAATGTATGATAACATCGAAAACTTTTTGCTAGAAAGCAATCTAAATCCTATAAGGTATGAATACAAAGAAATCAAGAAGATGACTGGAGGTTTTAGAGTGAAATTAGGTCAAGGAGGTTTTGGTGCTGTGTACAAAGGAAAGCTAAGAAGTGGACCGGATGTCGCAATAAAGATGTTGACAAAATCCAATGTTAATAATGGACAAGATTTTATCAACGAAGTTGCGACCATTGGAAGAATACATCATGTTAATGTGGTACGTCTTGTTGGATACTGTGTTGAAGGAAAAAAGAGTGCACTTGTTTACGAATTCATGCCGAATGGGTCATTAGATAAGTACATTTTCCCTAAAGAAGGAGTTGATCCTTTGAGTTACGAGAAAATATATGAAATATCTCTTGGAATAGCTCGTGGGATAGAATATCTGCATCGAGGTTGTGATATGCAAATTCTACATTTTGATATCAAGCCTCATAATATTCTTCTAGACGAAGACTTCGTTCCAAAGGTTTCGGATTTTGGACTTGCAAAGCTATATCCTGTGAACGATAGCATTGTTCCGTTAACTGCGGCAAGAGGAACTTTGGGTTACATGGCTCCTGAATTGTTCTACAAAAATATTGGAGGAGTGTCTTACAAAGCTGATGTATACAGCTTTGGAATGCTTTTGATGGAAATGGCAGGTAAGAGGAAGAACTCGGATCCTAACGCAGCCCACTCGAGTCAACATTACTTCCCATTTTGGATTTATGATCAATTTAAAGAAGAGAGAGAGATTGAAATAATGGAAGATGTCTCCGAAGAGGGAATGGCCTTAGCTAAAAGGATGTTTATGGTTGCACTTTGGTGTATTCAGTTGAAACCGAGTGATCGTCCTTCAATGAACAAAGTAGTTGAGATGCTTGAAGGGAAAACTGAAAGCCTTGAATTGCCTCCAAGGCCTTCTTTTTATGCGAATGAAAATTATAAACATCATGATGAAATCAGCTCTGATCATACATCATGGGGTGATTCCACCAGCATTGGCCAAACCTCAACTAATCATTCATTTGACGATTGA

Protein sequence

>MS.gene31762.t1

MFSGKYYVQHIDYKRFTISLSDAGAVEDSNCSFIPRYFLYDRSFNNVLFGEDNFGSEPFILDPINPLRIAYFNCSNPIKDPRYVKVDMSRCSTHGNSSTNHVYAVLEPSLFEYRVEDIKVGCDFMVATLAKAQPEIVKDNVSYDEIHRMIIDGFEVSWLPVICEDRCGKGTSCKVVDEDSGEVQCNKQLCHYAYQTTDKCELQDQIFGYTRAYLRGIFIGLGSRITFSTRQLDNPVGLEYFDGGIIIGRNVIPLFIGVRFVFGVIVLLVLFIYKWRRRHLSMYDNIENFLLESNLNPIRYEYKEIKKMTGGFRVKLGQGGFGAVYKGKLRSGPDVAIKMLTKSNVNNGQDFINEVATIGRIHHVNVVRLVGYCVEGKKSALVYEFMPNGSLDKYIFPKEGVDPLSYEKIYEISLGIARGIEYLHRGCDMQILHFDIKPHNILLDEDFVPKVSDFGLAKLYPVNDSIVPLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGKRKNSDPNAAHSSQHYFPFWIYDQFKEEREIEIMEDVSEEGMALAKRMFMVALWCIQLKPSDRPSMNKVVEMLEGKTESLELPPRPSFYANENYKHHDEISSDHTSWGDSTSIGQTSTNHSFDD