Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32677.t1 | KEH35909.1 | 92.6 | 417 | 18 | 2 | 1 | 417 | 1 | 404 | 1.00E-212 | 749.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32677.t1 | O04136 | 69.3 | 433 | 78 | 10 | 1 | 384 | 1 | 427 | 1.3e-147 | 524.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32677.t1 | A0A072V1N7 | 92.6 | 417 | 18 | 2 | 1 | 417 | 1 | 404 | 7.5e-213 | 749.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene32677.t1 | TF | HB-KNOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene32677 | 0.805762 | 1.14E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene32677 | 0.839574 | 1.46E-57 | -1.69E-46 |
| MS.gene050323 | MS.gene32677 | 0.806802 | 6.89E-50 | -1.69E-46 |
| MS.gene050697 | MS.gene32677 | 0.809558 | 1.78E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene32677 | 0.833681 | 4.64E-56 | -1.69E-46 |
| MS.gene050871 | MS.gene32677 | 0.838893 | 2.19E-57 | -1.69E-46 |
| MS.gene051941 | MS.gene32677 | 0.815435 | 9.26E-52 | -1.69E-46 |
| MS.gene052164 | MS.gene32677 | 0.819816 | 9.52E-53 | -1.69E-46 |
| MS.gene052503 | MS.gene32677 | 0.807765 | 4.31E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene32677 | 0.817531 | 3.14E-52 | -1.69E-46 |
| MS.gene052825 | MS.gene32677 | 0.816015 | 6.88E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene32677 | 0.80818 | 3.52E-50 | -1.69E-46 |
| MS.gene053421 | MS.gene32677 | -0.821369 | 4.19E-53 | -1.69E-46 |
| MS.gene053480 | MS.gene32677 | 0.803201 | 3.90E-49 | -1.69E-46 |
| MS.gene053626 | MS.gene32677 | 0.835369 | 1.75E-56 | -1.69E-46 |
| MS.gene054486 | MS.gene32677 | 0.810331 | 1.22E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene32677 | 0.807117 | 5.91E-50 | -1.69E-46 |
| MS.gene055629 | MS.gene32677 | 0.819648 | 1.04E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene32677 | 0.807521 | 4.85E-50 | -1.69E-46 |
| MS.gene055909 | MS.gene32677 | 0.80606 | 9.88E-50 | -1.69E-46 |
| MS.gene055911 | MS.gene32677 | 0.803241 | 3.83E-49 | -1.69E-46 |
| MS.gene05601 | MS.gene32677 | 0.80743 | 5.07E-50 | -1.69E-46 |
| MS.gene056040 | MS.gene32677 | 0.819478 | 1.14E-52 | -1.69E-46 |
| MS.gene056166 | MS.gene32677 | 0.828779 | 7.43E-55 | -1.69E-46 |
| MS.gene056387 | MS.gene32677 | 0.86794 | 9.45E-66 | -1.69E-46 |
| MS.gene056504 | MS.gene32677 | 0.810066 | 1.39E-50 | -1.69E-46 |
| MS.gene056583 | MS.gene32677 | -0.800138 | 1.66E-48 | -1.69E-46 |
| MS.gene057086 | MS.gene32677 | 0.809161 | 2.17E-50 | -1.69E-46 |
| MS.gene057321 | MS.gene32677 | -0.803846 | 2.87E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene32677 | 0.844768 | 6.16E-59 | -1.69E-46 |
| MS.gene058157 | MS.gene32677 | 0.863822 | 1.89E-64 | -1.69E-46 |
| MS.gene058420 | MS.gene32677 | 0.837069 | 6.46E-57 | -1.69E-46 |
| MS.gene059367 | MS.gene32677 | 0.813584 | 2.38E-51 | -1.69E-46 |
| MS.gene05995 | MS.gene32677 | 0.853996 | 1.65E-61 | -1.69E-46 |
| MS.gene05996 | MS.gene32677 | 0.843331 | 1.50E-58 | -1.69E-46 |
| MS.gene06000 | MS.gene32677 | 0.832076 | 1.16E-55 | -1.69E-46 |
| MS.gene060187 | MS.gene32677 | -0.808445 | 3.09E-50 | -1.69E-46 |
| MS.gene060778 | MS.gene32677 | 0.854795 | 9.70E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76034 | MS.gene32677 | PPI |
| MS.gene074258 | MS.gene32677 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32677.t1 | MTR_3g106400 | 96.403 | 417 | 2 | 2 | 1 | 417 | 1 | 404 | 0.0 | 830 |
| MS.gene32677.t1 | MTR_3g106400 | 96.094 | 384 | 2 | 2 | 1 | 384 | 1 | 371 | 0.0 | 761 |
| MS.gene32677.t1 | MTR_3g106400 | 96.094 | 384 | 2 | 2 | 1 | 384 | 1 | 371 | 0.0 | 760 |
| MS.gene32677.t1 | MTR_1g012960 | 66.970 | 439 | 87 | 8 | 1 | 384 | 1 | 436 | 0.0 | 557 |
| MS.gene32677.t1 | MTR_2g461240 | 66.006 | 353 | 79 | 6 | 32 | 383 | 42 | 354 | 1.76e-159 | 454 |
| MS.gene32677.t1 | MTR_4g116545 | 78.439 | 269 | 50 | 3 | 118 | 384 | 69 | 331 | 6.11e-152 | 434 |
| MS.gene32677.t1 | MTR_4g116545 | 80.078 | 256 | 43 | 3 | 118 | 371 | 69 | 318 | 1.21e-148 | 426 |
| MS.gene32677.t1 | MTR_5g011070 | 67.033 | 273 | 78 | 3 | 120 | 386 | 28 | 294 | 1.95e-128 | 373 |
| MS.gene32677.t1 | MTR_1g084060 | 35.249 | 261 | 122 | 8 | 120 | 368 | 20 | 245 | 1.29e-30 | 119 |
| MS.gene32677.t1 | MTR_1g084060 | 35.249 | 261 | 122 | 8 | 120 | 368 | 20 | 245 | 2.41e-30 | 119 |
| MS.gene32677.t1 | MTR_2g024390 | 28.102 | 274 | 166 | 4 | 120 | 392 | 118 | 361 | 1.28e-28 | 115 |
| MS.gene32677.t1 | MTR_1g017080 | 32.669 | 251 | 139 | 7 | 120 | 368 | 120 | 342 | 1.44e-25 | 107 |
| MS.gene32677.t1 | MTR_5g033720 | 32.669 | 251 | 138 | 6 | 120 | 368 | 73 | 294 | 3.21e-25 | 105 |
| MS.gene32677.t1 | MTR_5g085860 | 29.032 | 279 | 152 | 7 | 120 | 392 | 47 | 285 | 3.13e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32677.t1 | AT5G25220 | 65.217 | 437 | 81 | 12 | 1 | 384 | 1 | 419 | 0.0 | 511 |
| MS.gene32677.t1 | AT5G25220 | 65.138 | 436 | 81 | 12 | 1 | 383 | 1 | 418 | 2.60e-180 | 509 |
| MS.gene32677.t1 | AT5G11060 | 67.233 | 412 | 76 | 12 | 1 | 383 | 1 | 382 | 4.21e-174 | 492 |
| MS.gene32677.t1 | AT4G32040 | 62.467 | 381 | 127 | 8 | 6 | 384 | 13 | 379 | 1.25e-154 | 442 |
| MS.gene32677.t1 | AT4G32040 | 62.467 | 381 | 127 | 8 | 6 | 384 | 13 | 379 | 2.14e-154 | 442 |
| MS.gene32677.t1 | AT1G62990 | 62.759 | 290 | 99 | 4 | 97 | 383 | 7 | 290 | 3.16e-126 | 367 |
| MS.gene32677.t1 | AT1G70510 | 33.077 | 260 | 137 | 8 | 113 | 368 | 63 | 289 | 1.82e-29 | 117 |
| MS.gene32677.t1 | AT1G23380 | 32.616 | 279 | 143 | 9 | 120 | 390 | 86 | 327 | 8.48e-29 | 115 |
| MS.gene32677.t1 | AT1G70510 | 31.923 | 260 | 144 | 7 | 113 | 368 | 63 | 293 | 5.92e-28 | 112 |
| MS.gene32677.t1 | AT1G23380 | 32.384 | 281 | 143 | 10 | 120 | 390 | 86 | 329 | 6.22e-27 | 110 |
| MS.gene32677.t1 | AT4G08150 | 33.205 | 259 | 130 | 8 | 120 | 368 | 135 | 360 | 1.04e-25 | 108 |
| MS.gene32677.t1 | AT1G62360 | 34.400 | 250 | 135 | 6 | 120 | 368 | 122 | 343 | 2.78e-25 | 106 |
Find 123 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAATAGTATGGGAGGATT+TGG | 0.320582 | 3.1:+84411935 | MS.gene32677:CDS |
| TGCCAGCTGAGCGTCGATCC+TGG | 0.345057 | 3.1:-84409445 | None:intergenic |
| TGTACCTGTTAGACTTTGTA+AGG | 0.355039 | 3.1:-84410420 | None:intergenic |
| GTACTCTGCGTTAGGACAAC+AGG | 0.363398 | 3.1:+84409491 | MS.gene32677:CDS |
| GGATGGTTCAGATAATAGTA+TGG | 0.368115 | 3.1:+84411925 | MS.gene32677:CDS |
| CTTTCCAAACTGCACCTAAC+TGG | 0.380352 | 3.1:+84409082 | MS.gene32677:CDS |
| AATTGAAACAGATCAATAAC+TGG | 0.381851 | 3.1:+84412919 | MS.gene32677:CDS |
| GTTGTTGTTGTTCTGTGAAA+TGG | 0.389827 | 3.1:-84409029 | None:intergenic |
| TGCCTTTCAGGAAGAGGATA+AGG | 0.392331 | 3.1:+84412869 | MS.gene32677:intron |
| CAGTCCTTACAAAGTCTAAC+AGG | 0.396414 | 3.1:+84410416 | MS.gene32677:CDS |
| GAGCGTCGATCCTGGGCAAC+TGG | 0.397329 | 3.1:-84409437 | None:intergenic |
| TAAACAACTCGACCACTTCA+TGG | 0.399427 | 3.1:+84409536 | MS.gene32677:CDS |
| GAGCCATTGACCGGAGGATT+GGG | 0.403988 | 3.1:-84409205 | None:intergenic |
| GCAAGGTTGGTGCAAGAAAC+CGG | 0.410624 | 3.1:+84412891 | MS.gene32677:CDS |
| TGGTGTCGAGGTTGCGAAGA+AGG | 0.418558 | 3.1:-84409116 | None:intergenic |
| AGACGAGCTGGAAAACTTCC+TGG | 0.420513 | 3.1:+84412314 | MS.gene32677:CDS |
| AGTGATGTTAATCTGTTTGA+TGG | 0.421723 | 3.1:+84411896 | MS.gene32677:CDS |
| AGGGCGTTGTTGAGCCAGTT+AGG | 0.423606 | 3.1:-84409096 | None:intergenic |
| GAAGTCATCGACGACGTTAC+CGG | 0.424039 | 3.1:+84409258 | MS.gene32677:CDS |
| TGAGCCAGTTAGGTGCAGTT+TGG | 0.424789 | 3.1:-84409086 | None:intergenic |
| GGAAGCAGTAATGGCTTGTT+GGG | 0.426655 | 3.1:+84410385 | MS.gene32677:CDS |
| GTTCCCAATCCTCCGGTCAA+TGG | 0.427348 | 3.1:+84409202 | MS.gene32677:CDS |
| AATGGTGGAGTGGGTTGTCT+TGG | 0.431285 | 3.1:-84409011 | None:intergenic |
| TGGAAGCAGTAATGGCTTGT+TGG | 0.435199 | 3.1:+84410384 | MS.gene32677:CDS |
| ATCCTGGGCAACTGGTCAAC+CGG | 0.438877 | 3.1:-84409429 | None:intergenic |
| TCAATCAAAGGAAGAGGAAC+TGG | 0.439251 | 3.1:+84412946 | MS.gene32677:CDS |
| GAAGTTGGTACTGTTGTTGT+TGG | 0.439599 | 3.1:-84409160 | None:intergenic |
| GCCCAGGATCGACGCTCAGC+TGG | 0.442737 | 3.1:+84409443 | MS.gene32677:CDS |
| GAAACACAAAGGTGAAATAA+TGG | 0.443665 | 3.1:+84409347 | MS.gene32677:CDS |
| TAATCTGTTTGATGGAGGTT+TGG | 0.446200 | 3.1:+84411904 | MS.gene32677:CDS |
| AGAGCCATTGACCGGAGGAT+TGG | 0.446472 | 3.1:-84409206 | None:intergenic |
| GCCAGCTGAGCGTCGATCCT+GGG | 0.452139 | 3.1:-84409444 | None:intergenic |
| GGTACTGTTGTTGTTGGTTG+TGG | 0.453246 | 3.1:-84409154 | None:intergenic |
| ATTAAAGCATGAGTTGAAAC+AGG | 0.455099 | 3.1:+84412012 | MS.gene32677:CDS |
| ATAGAAGCTGTTCATACAAC+GGG | 0.456842 | 3.1:-84409374 | None:intergenic |
| TTGTCCTAACGCAGAGTACT+TGG | 0.459203 | 3.1:-84409487 | None:intergenic |
| AACCGGCGGTGTCGAGGTTG+AGG | 0.460908 | 3.1:-84409182 | None:intergenic |
| CAGCGGAGGGAGTGATGAAC+TGG | 0.464161 | 3.1:+84409316 | MS.gene32677:CDS |
| CGCCGGTTGACCAGTTGCCC+AGG | 0.465203 | 3.1:+84409427 | MS.gene32677:CDS |
| CAACCTCAGTACTTAAAGAT+TGG | 0.466078 | 3.1:+84412342 | MS.gene32677:CDS |
| TTCAACGCATTAGAAGTTGA+AGG | 0.469895 | 3.1:-84412978 | None:intergenic |
| GTTGTTGTTGGTTGTGGCGG+TGG | 0.469972 | 3.1:-84409148 | None:intergenic |
| CCATGCAATGGAAGCAGTAA+TGG | 0.471444 | 3.1:+84410376 | MS.gene32677:CDS |
| GTTGCTCCTGTACCTTCCCC+TGG | 0.471752 | 3.1:-84411842 | None:intergenic |
| CTGTTTGATGGAGGTTTGGA+TGG | 0.472583 | 3.1:+84411908 | MS.gene32677:CDS |
| ATAGTTCTTACAGTAGGATA+AGG | 0.484286 | 3.1:-84412386 | None:intergenic |
| CATGGACTCGGACATGTTGT+TGG | 0.486135 | 3.1:-84410358 | None:intergenic |
| CGTTACCGGCGCTGGTATGA+AGG | 0.491895 | 3.1:+84409272 | MS.gene32677:CDS |
| GTTGCCAAGTACTCTGCGTT+AGG | 0.491986 | 3.1:+84409483 | MS.gene32677:CDS |
| GTTTCACCAGGGGAAGGTAC+AGG | 0.498577 | 3.1:+84411836 | MS.gene32677:CDS |
| AGTACTGAGGTTGTGTCACC+AGG | 0.501554 | 3.1:-84412332 | None:intergenic |
| CCATTACTGCTTCCATTGCA+TGG | 0.504180 | 3.1:-84410376 | None:intergenic |
| AGGACGGGAGAGCCATTGAC+CGG | 0.509843 | 3.1:-84409214 | None:intergenic |
| CTGTGGTTTCGATGGAGGAC+AGG | 0.510607 | 3.1:-84409234 | None:intergenic |
| GTTCTGTGAAATGGTGGAGT+GGG | 0.511127 | 3.1:-84409020 | None:intergenic |
| AAGCGGTGAGGCAACAGCGG+AGG | 0.511964 | 3.1:+84409302 | MS.gene32677:CDS |
| GCAAATTTAAGATTATGAAA+AGG | 0.513629 | 3.1:-84413040 | None:intergenic |
| CTGCTTCCATTGCATGGACT+CGG | 0.514678 | 3.1:-84410370 | None:intergenic |
| TTGACCGGAGGATTGGGAAC+CGG | 0.515320 | 3.1:-84409199 | None:intergenic |
| TGTTGCCTCACCGCTTTCCT+CGG | 0.515416 | 3.1:-84409295 | None:intergenic |
| TGACTTCGCTGTGGTTTCGA+TGG | 0.516848 | 3.1:-84409242 | None:intergenic |
| ACTTATTTCTAATTCAAGAT+CGG | 0.521991 | 3.1:-84413075 | None:intergenic |
| TCATTCTCTGTTAGAACAAG+AGG | 0.524064 | 3.1:-84411959 | None:intergenic |
| GGTGTCGAGGTTGCGAAGAA+GGG | 0.525959 | 3.1:-84409115 | None:intergenic |
| GAAAATTGTGGACATAAGAG+AGG | 0.527462 | 3.1:+84412277 | MS.gene32677:CDS |
| GGTGTCGAGGTTGAGGAAGT+TGG | 0.532035 | 3.1:-84409175 | None:intergenic |
| ATTGGGAACCGGCGGTGTCG+AGG | 0.533014 | 3.1:-84409188 | None:intergenic |
| GATGGTTCAGATAATAGTAT+GGG | 0.538925 | 3.1:+84411926 | MS.gene32677:CDS |
| CGTTGAAGAGCAAGCGCAAG+AGG | 0.539470 | 3.1:+84412994 | MS.gene32677:CDS |
| GGAAGAGGATAAGGCAAGGT+TGG | 0.540633 | 3.1:+84412878 | MS.gene32677:intron |
| GTTGTTGTTCTGTGAAATGG+TGG | 0.541053 | 3.1:-84409026 | None:intergenic |
| GAGTGGTGAGGATCGGAGGT+TGG | 0.542790 | 3.1:-84409060 | None:intergenic |
| CTTCGCTGTGGTTTCGATGG+AGG | 0.543312 | 3.1:-84409239 | None:intergenic |
| CTCGGCCTTCATACCAGCGC+CGG | 0.547542 | 3.1:-84409277 | None:intergenic |
| CCTCAGTACTTAAAGATTGG+TGG | 0.548243 | 3.1:+84412345 | MS.gene32677:CDS |
| GTTTCGATGGAGGACAGGAC+GGG | 0.549706 | 3.1:-84409229 | None:intergenic |
| GAAAGAGTGGTGAGGATCGG+AGG | 0.551627 | 3.1:-84409064 | None:intergenic |
| GAATTAGAAATAAGTAATGC+AGG | 0.558191 | 3.1:+84413083 | MS.gene32677:CDS |
| ATCGACGACGTTACCGGCGC+TGG | 0.558499 | 3.1:+84409264 | MS.gene32677:CDS |
| AGCGGTGAGGCAACAGCGGA+GGG | 0.559972 | 3.1:+84409303 | MS.gene32677:CDS |
| AGAGAATGAGAGGTCCCTCA+TGG | 0.567340 | 3.1:+84411973 | MS.gene32677:CDS |
| ATAACTGGTTTATCAATCAA+AGG | 0.567448 | 3.1:+84412934 | MS.gene32677:CDS |
| TGTTCTGTGAAATGGTGGAG+TGG | 0.567991 | 3.1:-84409021 | None:intergenic |
| CAAGGTTGGTGCAAGAAACC+GGG | 0.570646 | 3.1:+84412892 | MS.gene32677:CDS |
| ACCGCCGGTTCCCAATCCTC+CGG | 0.570735 | 3.1:+84409195 | MS.gene32677:CDS |
| TTCCTCAACCTCGACACCGC+CGG | 0.572536 | 3.1:+84409180 | MS.gene32677:CDS |
| CGGCGCTGGTATGAAGGCCG+AGG | 0.574579 | 3.1:+84409278 | MS.gene32677:CDS |
| GGTTTATCAATCAAAGGAAG+AGG | 0.579093 | 3.1:+84412940 | MS.gene32677:CDS |
| TTGGAAAGAGTGGTGAGGAT+CGG | 0.583594 | 3.1:-84409067 | None:intergenic |
| CCACCAATCTTTAAGTACTG+AGG | 0.588799 | 3.1:-84412345 | None:intergenic |
| GGTTTCGATGGAGGACAGGA+CGG | 0.592132 | 3.1:-84409230 | None:intergenic |
| AAAGGTAAAATACCATGAAG+TGG | 0.598924 | 3.1:-84409548 | None:intergenic |
| TAGGTGCAGTTTGGAAAGAG+TGG | 0.600373 | 3.1:-84409077 | None:intergenic |
| TGGCGTTGACGTTGGTGTCG+AGG | 0.601937 | 3.1:-84409128 | None:intergenic |
| GGGTTATAAAGAGAAAATTG+TGG | 0.610746 | 3.1:+84412265 | MS.gene32677:intron |
| TTGTTCTAACAGAGAATGAG+AGG | 0.611125 | 3.1:+84411963 | MS.gene32677:CDS |
| TGTGGCGGTGGCGTTGACGT+TGG | 0.611369 | 3.1:-84409136 | None:intergenic |
| GGTTCAGATAATAGTATGGG+AGG | 0.618510 | 3.1:+84411929 | MS.gene32677:CDS |
| GATGTTAATCTGTTTGATGG+AGG | 0.621633 | 3.1:+84411899 | MS.gene32677:CDS |
| TGTGTAACAGGAGTTTCACC+AGG | 0.621894 | 3.1:+84411824 | MS.gene32677:intron |
| GATCTGTTTCAATTGCAACC+CGG | 0.623157 | 3.1:-84412910 | None:intergenic |
| ACCGGAGGATTGGGAACCGG+CGG | 0.625286 | 3.1:-84409196 | None:intergenic |
| GGAAAGCGGTGAGGCAACAG+CGG | 0.626255 | 3.1:+84409299 | MS.gene32677:CDS |
| GGGCAACTGGTCAACCGGCG+TGG | 0.628223 | 3.1:-84409424 | None:intergenic |
| ATGTCTTACACGTTCCATGA+GGG | 0.635061 | 3.1:-84411987 | None:intergenic |
| ACAGGAGTTTCACCAGGGGA+AGG | 0.636992 | 3.1:+84411830 | MS.gene32677:intron |
| ACATGTCCGAGTCCATGCAA+TGG | 0.642083 | 3.1:+84410364 | MS.gene32677:CDS |
| ACTGTTGTTGTTGGTTGTGG+CGG | 0.642777 | 3.1:-84409151 | None:intergenic |
| CATGTCTTACACGTTCCATG+AGG | 0.645094 | 3.1:-84411988 | None:intergenic |
| GATAGAAGCTGTTCATACAA+CGG | 0.647941 | 3.1:-84409375 | None:intergenic |
| TACTCTGCGTTAGGACAACA+GGG | 0.650241 | 3.1:+84409492 | MS.gene32677:CDS |
| GGTATGAAGGCCGAGGAAAG+CGG | 0.652275 | 3.1:+84409285 | MS.gene32677:CDS |
| ACGGGAGAGCCATTGACCGG+AGG | 0.652694 | 3.1:-84409211 | None:intergenic |
| GTGTTTGAGAATCGCCACGC+CGG | 0.654940 | 3.1:+84409410 | MS.gene32677:CDS |
| TTCAGGAAGAGGATAAGGCA+AGG | 0.655439 | 3.1:+84412874 | MS.gene32677:intron |
| AATGCAGGTGATAAAAGTGA+CGG | 0.675503 | 3.1:+84413098 | MS.gene32677:CDS |
| GGTGGCAATCACATTCAAAG+TGG | 0.680210 | 3.1:+84412363 | MS.gene32677:CDS |
| CGTCGTCGATGACTTCGCTG+TGG | 0.682559 | 3.1:-84409251 | None:intergenic |
| TGGCAGAAAGCGAAACACAA+AGG | 0.682726 | 3.1:+84409336 | MS.gene32677:CDS |
| GCAGTTTGGAAAGAGTGGTG+AGG | 0.695329 | 3.1:-84409072 | None:intergenic |
| GTGTAACAGGAGTTTCACCA+GGG | 0.706920 | 3.1:+84411825 | MS.gene32677:intron |
| GAAGGCCGAGGAAAGCGGTG+AGG | 0.708487 | 3.1:+84409290 | MS.gene32677:CDS |
| TGTAACAGGAGTTTCACCAG+GGG | 0.775474 | 3.1:+84411826 | MS.gene32677:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAATAATGATTAGT+CGG | - | chr3.1:84412827-84412846 | None:intergenic | 10.0% |
| !!! | AATTACAATATTTTTTTGTA+TGG | + | chr3.1:84410060-84410079 | MS.gene32677:intron | 10.0% |
| !! | AATGATAATTAAGATCTTAA+TGG | + | chr3.1:84410760-84410779 | MS.gene32677:intron | 15.0% |
| !! | AATTTATTAGTAAGATAGAA+TGG | + | chr3.1:84411554-84411573 | MS.gene32677:intron | 15.0% |
| !! | CTAATAAATTATTCATTATG+TGG | - | chr3.1:84411544-84411563 | None:intergenic | 15.0% |
| !! | TTTGTAAATATTATTGAGAA+AGG | - | chr3.1:84409569-84409588 | None:intergenic | 15.0% |
| !!! | AAGTTTTTATAGGAAAAAAT+AGG | + | chr3.1:84410574-84410593 | MS.gene32677:intron | 15.0% |
| !!! | AATTTTCTGCAATAATATTT+TGG | + | chr3.1:84410115-84410134 | MS.gene32677:intron | 15.0% |
| !!! | ATTTATACTTTTCTCAATAT+AGG | + | chr3.1:84410668-84410687 | MS.gene32677:intron | 15.0% |
| !!! | TATTTTTTATTTTTTTGTCG+TGG | + | chr3.1:84410193-84410212 | MS.gene32677:intron | 15.0% |
| !! | AAAATAATTAAGGTAGCTAA+TGG | + | chr3.1:84409889-84409908 | MS.gene32677:intron | 20.0% |
| !! | AAATAACATGCTAAAAAGTA+AGG | - | chr3.1:84411667-84411686 | None:intergenic | 20.0% |
| !! | AATTAGTACTCATATCTAAT+GGG | - | chr3.1:84411783-84411802 | None:intergenic | 20.0% |
| !! | ATTATTCATTATGTGGTTTA+AGG | - | chr3.1:84411537-84411556 | None:intergenic | 20.0% |
| !! | GATTACATTAAATGTTGAAT+AGG | + | chr3.1:84412048-84412067 | MS.gene32677:intron | 20.0% |
| !! | TAAATTATTCATGACGTATT+TGG | - | chr3.1:84411068-84411087 | None:intergenic | 20.0% |
| !! | TAATTAGTACTCATATCTAA+TGG | - | chr3.1:84411784-84411803 | None:intergenic | 20.0% |
| !! | TTCTCAATATAGGAATTATA+CGG | + | chr3.1:84410678-84410697 | MS.gene32677:intron | 20.0% |
| !!! | ACTTATTTCTAATTCAAGAT+CGG | - | chr3.1:84413078-84413097 | None:intergenic | 20.0% |
| !!! | AGAATTTATTTTCTGTTGTA+TGG | + | chr3.1:84410259-84410278 | MS.gene32677:intron | 20.0% |
| !!! | ATATATGAATTATTTGGGTT+AGG | + | chr3.1:84410988-84411007 | MS.gene32677:intron | 20.0% |
| !!! | CATATTGATTAATATCCAAT+TGG | - | chr3.1:84411337-84411356 | None:intergenic | 20.0% |
| !!! | GCAAAACTTAAATTTTAACT+CGG | + | chr3.1:84409718-84409737 | MS.gene32677:intron | 20.0% |
| !!! | GCAAATTTAAGATTATGAAA+AGG | - | chr3.1:84413043-84413062 | None:intergenic | 20.0% |
| !!! | TAAGCAAAAAACTACATTTT+AGG | + | chr3.1:84410859-84410878 | MS.gene32677:intron | 20.0% |
| !!! | TACAATATTTTTTTGTATGG+TGG | + | chr3.1:84410063-84410082 | MS.gene32677:intron | 20.0% |
| !!! | TATATGAATTATTTGGGTTA+GGG | + | chr3.1:84410989-84411008 | MS.gene32677:intron | 20.0% |
| ! | AAAACATAATTACACTCCAT+TGG | - | chr3.1:84410174-84410193 | None:intergenic | 25.0% |
| ! | AAAGTCCAAACAATTCATAT+GGG | - | chr3.1:84411461-84411480 | None:intergenic | 25.0% |
| ! | AACATCATAGTTATACTGTA+TGG | + | chr3.1:84411607-84411626 | MS.gene32677:intron | 25.0% |
| ! | AACATTTAATGTAATCCATG+AGG | - | chr3.1:84412044-84412063 | None:intergenic | 25.0% |
| ! | AAGCTATCTTAGATATCTTA+CGG | + | chr3.1:84412672-84412691 | MS.gene32677:intron | 25.0% |
| ! | AATTCTGTCAAAAAAAAGCA+AGG | - | chr3.1:84411642-84411661 | None:intergenic | 25.0% |
| ! | AATTGAAACAGATCAATAAC+TGG | + | chr3.1:84412919-84412938 | MS.gene32677:CDS | 25.0% |
| ! | ACAATTCTGTCAAAAAAACA+AGG | - | chr3.1:84411215-84411234 | None:intergenic | 25.0% |
| ! | AGGAATAAGCAACAAAAATT+TGG | - | chr3.1:84410534-84410553 | None:intergenic | 25.0% |
| ! | ATATGAATTGTTTGGACTTT+GGG | + | chr3.1:84411461-84411480 | MS.gene32677:intron | 25.0% |
| ! | CATTAAATGTTGAATAGGAA+AGG | + | chr3.1:84412053-84412072 | MS.gene32677:intron | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | + | chr3.1:84410884-84410903 | MS.gene32677:intron | 25.0% |
| ! | CATTCGTGTAATTTATCTTT+AGG | - | chr3.1:84410554-84410573 | None:intergenic | 25.0% |
| ! | GAATTAGAAATAAGTAATGC+AGG | + | chr3.1:84413083-84413102 | MS.gene32677:CDS | 25.0% |
| ! | GGCGTATATATGAATTATTT+GGG | + | chr3.1:84410983-84411002 | MS.gene32677:intron | 25.0% |
| ! | GTATCTATATTCAAAGTACA+TGG | - | chr3.1:84411700-84411719 | None:intergenic | 25.0% |
| ! | TAAATATTTGAGAACCTGAT+TGG | - | chr3.1:84412727-84412746 | None:intergenic | 25.0% |
| ! | TATACATAAATTCTTGCCAA+TGG | + | chr3.1:84410155-84410174 | MS.gene32677:intron | 25.0% |
| ! | TCTCAATATAGGAATTATAC+GGG | + | chr3.1:84410679-84410698 | MS.gene32677:intron | 25.0% |
| ! | TTTCAGATTCAAAACATACT+TGG | + | chr3.1:84412442-84412461 | MS.gene32677:intron | 25.0% |
| !! | AACATTTTATAGATCCAATC+AGG | + | chr3.1:84412710-84412729 | MS.gene32677:intron | 25.0% |
| !! | ACTGAAAATAAGTCTAAAGT+AGG | + | chr3.1:84409846-84409865 | MS.gene32677:intron | 25.0% |
| !! | ATAACTGGTTTATCAATCAA+AGG | + | chr3.1:84412934-84412953 | MS.gene32677:CDS | 25.0% |
| !! | TACACGAATGAAGTTTTTAT+AGG | + | chr3.1:84410564-84410583 | MS.gene32677:intron | 25.0% |
| !! | TATTTTCTGTTGTATGGTTA+CGG | + | chr3.1:84410265-84410284 | MS.gene32677:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | + | chr3.1:84410958-84410977 | MS.gene32677:intron | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | - | chr3.1:84410849-84410868 | None:intergenic | 25.0% |
| !!! | AACATGTGAACTATTTTGAA+TGG | - | chr3.1:84412774-84412793 | None:intergenic | 25.0% |
| !!! | CAATTTCACTTTTGCAAAAA+AGG | - | chr3.1:84409763-84409782 | None:intergenic | 25.0% |
| !!! | GTATGTTTTGAATCTGAAAA+AGG | - | chr3.1:84412441-84412460 | None:intergenic | 25.0% |
| !!! | TTTCTGCAATAATATTTTGG+CGG | + | chr3.1:84410118-84410137 | MS.gene32677:intron | 25.0% |
| AAAAAAAAGCAAGGACAACT+GGG | - | chr3.1:84411633-84411652 | None:intergenic | 30.0% | |
| AAAGGTAAAATACCATGAAG+TGG | - | chr3.1:84409551-84409570 | None:intergenic | 30.0% | |
| AAATTTGTGTCTACAGTAAC+TGG | - | chr3.1:84410228-84410247 | None:intergenic | 30.0% | |
| AAGTGAAATTGAAACATGCA+CGG | + | chr3.1:84409772-84409791 | MS.gene32677:intron | 30.0% | |
| ACAAGTTAGCTAATCTTTCT+TGG | - | chr3.1:84411277-84411296 | None:intergenic | 30.0% | |
| AGTAATAATCAAGCCCTTAA+TGG | + | chr3.1:84411383-84411402 | MS.gene32677:intron | 30.0% | |
| AGTCATTCATGCATAGTAAT+AGG | - | chr3.1:84409829-84409848 | None:intergenic | 30.0% | |
| AGTGATGTTAATCTGTTTGA+TGG | + | chr3.1:84411896-84411915 | MS.gene32677:CDS | 30.0% | |
| ATAGTTCTTACAGTAGGATA+AGG | - | chr3.1:84412389-84412408 | None:intergenic | 30.0% | |
| ATTCAAAGTACATGGTAGTT+TGG | - | chr3.1:84411692-84411711 | None:intergenic | 30.0% | |
| ATTCATGACGTATTTGGTAT+AGG | - | chr3.1:84411062-84411081 | None:intergenic | 30.0% | |
| CAAAGTCCAAACAATTCATA+TGG | - | chr3.1:84411462-84411481 | None:intergenic | 30.0% | |
| CATATGAATTGTTTGGACTT+TGG | + | chr3.1:84411460-84411479 | MS.gene32677:intron | 30.0% | |
| CATTCATTTAATGATGCACA+TGG | - | chr3.1:84410923-84410942 | None:intergenic | 30.0% | |
| CTCAATATAGGAATTATACG+GGG | + | chr3.1:84410680-84410699 | MS.gene32677:intron | 30.0% | |
| CTTTGACTATCAACCATTAA+GGG | - | chr3.1:84410776-84410795 | None:intergenic | 30.0% | |
| GAAACACAAAGGTGAAATAA+TGG | + | chr3.1:84409347-84409366 | MS.gene32677:CDS | 30.0% | |
| GATGGTTCAGATAATAGTAT+GGG | + | chr3.1:84411926-84411945 | MS.gene32677:CDS | 30.0% | |
| GCTGTTATAGTTATACTGTA+TGG | + | chr3.1:84411180-84411199 | MS.gene32677:intron | 30.0% | |
| GGGCGTATATATGAATTATT+TGG | + | chr3.1:84410982-84411001 | MS.gene32677:intron | 30.0% | |
| GGGTTATAAAGAGAAAATTG+TGG | + | chr3.1:84412265-84412284 | MS.gene32677:intron | 30.0% | |
| GTCAATATAGTTCTTACAGT+AGG | - | chr3.1:84412395-84412414 | None:intergenic | 30.0% | |
| GTCATTCATGCATAGTAATA+GGG | - | chr3.1:84409828-84409847 | None:intergenic | 30.0% | |
| TCAAAAAAACAAGGACAACT+GGG | - | chr3.1:84411206-84411225 | None:intergenic | 30.0% | |
| TGTGTTGAAACTTGAAATGA+TGG | - | chr3.1:84412120-84412139 | None:intergenic | 30.0% | |
| ! | ATTAAAGCATGAGTTGAAAC+AGG | + | chr3.1:84412012-84412031 | MS.gene32677:CDS | 30.0% |
| ! | GTTACTGTAGACACAAATTT+TGG | + | chr3.1:84410228-84410247 | MS.gene32677:intron | 30.0% |
| ! | TGTCAATTAATGGATGGAAA+TGG | + | chr3.1:84409634-84409653 | MS.gene32677:intron | 30.0% |
| ! | TTAATGGATGGAAATGGATT+TGG | + | chr3.1:84409640-84409659 | MS.gene32677:intron | 30.0% |
| ! | TTTCTTGGTGGATAATAGTT+TGG | - | chr3.1:84411262-84411281 | None:intergenic | 30.0% |
| !! | TTAATGGTTGATAGTCAAAG+AGG | + | chr3.1:84410776-84410795 | MS.gene32677:intron | 30.0% |
| !!! | CATACATCACTTTTTCCAAT+TGG | + | chr3.1:84411319-84411338 | MS.gene32677:intron | 30.0% |
| !!! | CCTTTTGAGCTTATTTTAAC+CGG | + | chr3.1:84409983-84410002 | MS.gene32677:intron | 30.0% |
| AAGCTTTGCGTGTCAATTAA+TGG | + | chr3.1:84409624-84409643 | MS.gene32677:intron | 35.0% | |
| AATGCAGGTGATAAAAGTGA+CGG | + | chr3.1:84413098-84413117 | MS.gene32677:CDS | 35.0% | |
| AGTTAGCTAATCTTTCTTGG+TGG | - | chr3.1:84411274-84411293 | None:intergenic | 35.0% | |
| ATAATAACATGCTACGAGCA+TGG | - | chr3.1:84411238-84411257 | None:intergenic | 35.0% | |
| ATAGAAGCTGTTCATACAAC+GGG | - | chr3.1:84409377-84409396 | None:intergenic | 35.0% | |
| CAAAAAAAAGCAAGGACAAC+TGG | - | chr3.1:84411634-84411653 | None:intergenic | 35.0% | |
| CAAACAATTCATATGGGACA+AGG | - | chr3.1:84411455-84411474 | None:intergenic | 35.0% | |
| CAACCTCAGTACTTAAAGAT+TGG | + | chr3.1:84412342-84412361 | MS.gene32677:CDS | 35.0% | |
| CATGTTAAGATAGGCTCAAA+AGG | - | chr3.1:84409926-84409945 | None:intergenic | 35.0% | |
| CCATTCTCTAATACACGTTT+CGG | - | chr3.1:84412227-84412246 | None:intergenic | 35.0% | |
| CCGGTTAAAATAAGCTCAAA+AGG | - | chr3.1:84409986-84410005 | None:intergenic | 35.0% | |
| CCTTTGACTATCAACCATTA+AGG | - | chr3.1:84411400-84411419 | None:intergenic | 35.0% | |
| CGAAACGTGTATTAGAGAAT+GGG | + | chr3.1:84412225-84412244 | MS.gene32677:intron | 35.0% | |
| CTTGTCCCATATGAATTGTT+TGG | + | chr3.1:84411453-84411472 | MS.gene32677:intron | 35.0% | |
| GAAAATTGTGGACATAAGAG+AGG | + | chr3.1:84412277-84412296 | MS.gene32677:CDS | 35.0% | |
| GATAATAGTATGGGAGGATT+TGG | + | chr3.1:84411935-84411954 | MS.gene32677:CDS | 35.0% | |
| GATAGAAGCTGTTCATACAA+CGG | - | chr3.1:84409378-84409397 | None:intergenic | 35.0% | |
| GATGTTAATCTGTTTGATGG+AGG | + | chr3.1:84411899-84411918 | MS.gene32677:CDS | 35.0% | |
| GGATGGTTCAGATAATAGTA+TGG | + | chr3.1:84411925-84411944 | MS.gene32677:CDS | 35.0% | |
| GGTCAAGTTCATGTTAAGAT+AGG | - | chr3.1:84409935-84409954 | None:intergenic | 35.0% | |
| GGTTTATCAATCAAAGGAAG+AGG | + | chr3.1:84412940-84412959 | MS.gene32677:CDS | 35.0% | |
| GTCAAAAAAACAAGGACAAC+TGG | - | chr3.1:84411207-84411226 | None:intergenic | 35.0% | |
| TAATCTGTTTGATGGAGGTT+TGG | + | chr3.1:84411904-84411923 | MS.gene32677:CDS | 35.0% | |
| TAATTCATATATACGCCCTC+CGG | - | chr3.1:84410980-84410999 | None:intergenic | 35.0% | |
| TCAAAGAGGAACATGACTAT+AGG | + | chr3.1:84410790-84410809 | MS.gene32677:intron | 35.0% | |
| TCATGCATAGTAATAGGGAA+AGG | - | chr3.1:84409823-84409842 | None:intergenic | 35.0% | |
| TCATTCTCTGTTAGAACAAG+AGG | - | chr3.1:84411962-84411981 | None:intergenic | 35.0% | |
| TGTACCTGTTAGACTTTGTA+AGG | - | chr3.1:84410423-84410442 | None:intergenic | 35.0% | |
| TTAACCGGCATGTTTATGTA+GGG | + | chr3.1:84409998-84410017 | MS.gene32677:intron | 35.0% | |
| TTGTTCTAACAGAGAATGAG+AGG | + | chr3.1:84411963-84411982 | MS.gene32677:CDS | 35.0% | |
| TTTAACCGGCATGTTTATGT+AGG | + | chr3.1:84409997-84410016 | MS.gene32677:intron | 35.0% | |
| TTTATCTCCACATGTGTAAC+AGG | + | chr3.1:84411812-84411831 | MS.gene32677:intron | 35.0% | |
| TTTATGTATAGAAGCTCGCA+TGG | - | chr3.1:84410145-84410164 | None:intergenic | 35.0% | |
| TTTGCGTGTCAATTAATGGA+TGG | + | chr3.1:84409628-84409647 | MS.gene32677:intron | 35.0% | |
| ! | AATTGTTTGGACTTTGGGTT+AGG | + | chr3.1:84411466-84411485 | MS.gene32677:intron | 35.0% |
| ! | ATTGTTTGGACTTTGGGTTA+GGG | + | chr3.1:84411467-84411486 | MS.gene32677:intron | 35.0% |
| ! | GTATGTTTTCGGTTCAGTAT+AGG | + | chr3.1:84410619-84410638 | MS.gene32677:intron | 35.0% |
| ! | GTTGTTGTTGTTCTGTGAAA+TGG | - | chr3.1:84409032-84409051 | None:intergenic | 35.0% |
| ! | TGGAAAATTTTCTCTCTCTC+TGG | + | chr3.1:84409660-84409679 | MS.gene32677:intron | 35.0% |
| !! | CCTTAATGGTTGATAGTCAA+AGG | + | chr3.1:84411397-84411416 | MS.gene32677:intron | 35.0% |
| !! | TAATGGTTGATAGTCAAAGG+AGG | + | chr3.1:84411400-84411419 | MS.gene32677:intron | 35.0% |
| !!! | GGGTTGCTCTTATTTTTGTA+GGG | + | chr3.1:84412245-84412264 | MS.gene32677:intron | 35.0% |
| !!! | TGGGTTGCTCTTATTTTTGT+AGG | + | chr3.1:84412244-84412263 | MS.gene32677:intron | 35.0% |
| AACTCCCTACATAAACATGC+CGG | - | chr3.1:84410005-84410024 | None:intergenic | 40.0% | |
| ACTGAACCGAAAACATACTG+CGG | - | chr3.1:84410617-84410636 | None:intergenic | 40.0% | |
| ATGTCTTACACGTTCCATGA+GGG | - | chr3.1:84411990-84412009 | None:intergenic | 40.0% | |
| CAATTCATATGGGACAAGGA+AGG | - | chr3.1:84411451-84411470 | None:intergenic | 40.0% | |
| CAGTCCTTACAAAGTCTAAC+AGG | + | chr3.1:84410416-84410435 | MS.gene32677:CDS | 40.0% | |
| CCGAAACGTGTATTAGAGAA+TGG | + | chr3.1:84412224-84412243 | MS.gene32677:intron | 40.0% | |
| CCTCAGTACTTAAAGATTGG+TGG | + | chr3.1:84412345-84412364 | MS.gene32677:CDS | 40.0% | |
| GATATGTGTTTGTGCCTTTC+AGG | + | chr3.1:84412857-84412876 | MS.gene32677:intron | 40.0% | |
| GATCTGTTTCAATTGCAACC+CGG | - | chr3.1:84412913-84412932 | None:intergenic | 40.0% | |
| GCTTGATCATAGACAAGCAA+GGG | - | chr3.1:84412541-84412560 | None:intergenic | 40.0% | |
| GGTTCAGATAATAGTATGGG+AGG | + | chr3.1:84411929-84411948 | MS.gene32677:CDS | 40.0% | |
| TAAACAACTCGACCACTTCA+TGG | + | chr3.1:84409536-84409555 | MS.gene32677:CDS | 40.0% | |
| TATCCCAATATGAGACCCTA+TGG | - | chr3.1:84410645-84410664 | None:intergenic | 40.0% | |
| TCAATCAAAGGAAGAGGAAC+TGG | + | chr3.1:84412946-84412965 | MS.gene32677:CDS | 40.0% | |
| TGAAACTCCTGTTACACATG+TGG | - | chr3.1:84411822-84411841 | None:intergenic | 40.0% | |
| TGATAGTCAAAGGAGGAACA+TGG | + | chr3.1:84411407-84411426 | MS.gene32677:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr3.1:84410962-84410981 | MS.gene32677:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | - | chr3.1:84410845-84410864 | None:intergenic | 40.0% | |
| TGCTTGATCATAGACAAGCA+AGG | - | chr3.1:84412542-84412561 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr3.1:84410961-84410980 | MS.gene32677:intron | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | - | chr3.1:84410846-84410865 | None:intergenic | 40.0% | |
| ! | AGCATGAGTTGAAACAGGTA+CGG | + | chr3.1:84412017-84412036 | MS.gene32677:intron | 40.0% |
| ! | CCACCAATCTTTAAGTACTG+AGG | - | chr3.1:84412348-84412367 | None:intergenic | 40.0% |
| ! | GTTGTTGTTCTGTGAAATGG+TGG | - | chr3.1:84409029-84409048 | None:intergenic | 40.0% |
| !! | GAAGTTGGTACTGTTGTTGT+TGG | - | chr3.1:84409163-84409182 | None:intergenic | 40.0% |
| AGGCCATAGGGTCTCATATT+GGG | + | chr3.1:84410639-84410658 | MS.gene32677:intron | 45.0% | |
| CATGTCTTACACGTTCCATG+AGG | - | chr3.1:84411991-84412010 | None:intergenic | 45.0% | |
| CCATGCAATGGAAGCAGTAA+TGG | + | chr3.1:84410376-84410395 | MS.gene32677:CDS | 45.0% | |
| CCATTACTGCTTCCATTGCA+TGG | - | chr3.1:84410379-84410398 | None:intergenic | 45.0% | |
| CTGTTTGATGGAGGTTTGGA+TGG | + | chr3.1:84411908-84411927 | MS.gene32677:CDS | 45.0% | |
| CTTTCCAAACTGCACCTAAC+TGG | + | chr3.1:84409082-84409101 | MS.gene32677:CDS | 45.0% | |
| GGTGGCAATCACATTCAAAG+TGG | + | chr3.1:84412363-84412382 | MS.gene32677:CDS | 45.0% | |
| GTGTAACAGGAGTTTCACCA+GGG | + | chr3.1:84411825-84411844 | MS.gene32677:intron | 45.0% | |
| TACTCTGCGTTAGGACAACA+GGG | + | chr3.1:84409492-84409511 | MS.gene32677:CDS | 45.0% | |
| TAGGCCATAGGGTCTCATAT+TGG | + | chr3.1:84410638-84410657 | MS.gene32677:intron | 45.0% | |
| TAGGTGCAGTTTGGAAAGAG+TGG | - | chr3.1:84409080-84409099 | None:intergenic | 45.0% | |
| TCGGTTCAGTATAGGCCATA+GGG | + | chr3.1:84410627-84410646 | MS.gene32677:intron | 45.0% | |
| TGCCTTATCCTCTTCCTGAA+AGG | - | chr3.1:84412874-84412893 | None:intergenic | 45.0% | |
| TGCCTTTCAGGAAGAGGATA+AGG | + | chr3.1:84412869-84412888 | MS.gene32677:intron | 45.0% | |
| TGGCAGAAAGCGAAACACAA+AGG | + | chr3.1:84409336-84409355 | MS.gene32677:CDS | 45.0% | |
| TGTAACAGGAGTTTCACCAG+GGG | + | chr3.1:84411826-84411845 | MS.gene32677:intron | 45.0% | |
| TGTGTAACAGGAGTTTCACC+AGG | + | chr3.1:84411824-84411843 | MS.gene32677:intron | 45.0% | |
| TGTTTGTGCCTTTCAGGAAG+AGG | + | chr3.1:84412863-84412882 | MS.gene32677:intron | 45.0% | |
| TTCAGGAAGAGGATAAGGCA+AGG | + | chr3.1:84412874-84412893 | MS.gene32677:intron | 45.0% | |
| TTCGGTTCAGTATAGGCCAT+AGG | + | chr3.1:84410626-84410645 | MS.gene32677:intron | 45.0% | |
| TTGGAAAGAGTGGTGAGGAT+CGG | - | chr3.1:84409070-84409089 | None:intergenic | 45.0% | |
| TTTCTCTCTCTCTGGACTCT+GGG | + | chr3.1:84409668-84409687 | MS.gene32677:intron | 45.0% | |
| ! | ACTGTTGTTGTTGGTTGTGG+CGG | - | chr3.1:84409154-84409173 | None:intergenic | 45.0% |
| ! | ATTTTACGCAAGAGACGAGC+TGG | + | chr3.1:84412302-84412321 | MS.gene32677:CDS | 45.0% |
| ! | GGTACTGTTGTTGTTGGTTG+TGG | - | chr3.1:84409157-84409176 | None:intergenic | 45.0% |
| ! | GTTCTGTGAAATGGTGGAGT+GGG | - | chr3.1:84409023-84409042 | None:intergenic | 45.0% |
| ! | TGGAAGCAGTAATGGCTTGT+TGG | + | chr3.1:84410384-84410403 | MS.gene32677:CDS | 45.0% |
| ! | TGTTCTGTGAAATGGTGGAG+TGG | - | chr3.1:84409024-84409043 | None:intergenic | 45.0% |
| ! | TTGTCCTAACGCAGAGTACT+TGG | - | chr3.1:84409490-84409509 | None:intergenic | 45.0% |
| ! | TTTTCTCTCTCTCTGGACTC+TGG | + | chr3.1:84409667-84409686 | MS.gene32677:intron | 45.0% |
| !! | GGAAGCAGTAATGGCTTGTT+GGG | + | chr3.1:84410385-84410404 | MS.gene32677:CDS | 45.0% |
| !! | AATAATTTATAATGATATAA+TGG | + | chr3.1:84411079-84411098 | MS.gene32677:intron | 5.0% |
| !! | CTTATTAATTAAAATAATTA+AGG | + | chr3.1:84409879-84409898 | MS.gene32677:intron | 5.0% |
| ACATGTCCGAGTCCATGCAA+TGG | + | chr3.1:84410364-84410383 | MS.gene32677:CDS | 50.0% | |
| AGACGAGCTGGAAAACTTCC+TGG | + | chr3.1:84412314-84412333 | MS.gene32677:CDS | 50.0% | |
| AGAGAATGAGAGGTCCCTCA+TGG | + | chr3.1:84411973-84411992 | MS.gene32677:CDS | 50.0% | |
| CAAAGGAGGAACATGGCTAC+AGG | + | chr3.1:84411414-84411433 | MS.gene32677:intron | 50.0% | |
| CATGGACTCGGACATGTTGT+TGG | - | chr3.1:84410361-84410380 | None:intergenic | 50.0% | |
| CTGCTTCCATTGCATGGACT+CGG | - | chr3.1:84410373-84410392 | None:intergenic | 50.0% | |
| GAAGTCATCGACGACGTTAC+CGG | + | chr3.1:84409258-84409277 | MS.gene32677:CDS | 50.0% | |
| GCAGTTTGGAAAGAGTGGTG+AGG | - | chr3.1:84409075-84409094 | None:intergenic | 50.0% | |
| GGAAGAGGATAAGGCAAGGT+TGG | + | chr3.1:84412878-84412897 | MS.gene32677:intron | 50.0% | |
| GTACTCTGCGTTAGGACAAC+AGG | + | chr3.1:84409491-84409510 | MS.gene32677:CDS | 50.0% | |
| GTTGCCAAGTACTCTGCGTT+AGG | + | chr3.1:84409483-84409502 | MS.gene32677:CDS | 50.0% | |
| TGAAACAGGTACGGTCCTCA+TGG | + | chr3.1:84412026-84412045 | MS.gene32677:intron | 50.0% | |
| TGACTTCGCTGTGGTTTCGA+TGG | - | chr3.1:84409245-84409264 | None:intergenic | 50.0% | |
| TGAGCCAGTTAGGTGCAGTT+TGG | - | chr3.1:84409089-84409108 | None:intergenic | 50.0% | |
| ! | AGTACTGAGGTTGTGTCACC+AGG | - | chr3.1:84412335-84412354 | None:intergenic | 50.0% |
| ! | CTGCTGCCGCAGTATGTTTT+CGG | + | chr3.1:84410608-84410627 | MS.gene32677:intron | 50.0% |
| !! | AATGGTGGAGTGGGTTGTCT+TGG | - | chr3.1:84409014-84409033 | None:intergenic | 50.0% |
| !! | CAAGGTTGGTGCAAGAAACC+GGG | + | chr3.1:84412892-84412911 | MS.gene32677:CDS | 50.0% |
| !! | GCAAGGTTGGTGCAAGAAAC+CGG | + | chr3.1:84412891-84412910 | MS.gene32677:CDS | 50.0% |
| ACAGGAGTTTCACCAGGGGA+AGG | + | chr3.1:84411830-84411849 | MS.gene32677:intron | 55.0% | |
| AGAGCCATTGACCGGAGGAT+TGG | - | chr3.1:84409209-84409228 | None:intergenic | 55.0% | |
| ATCCTGGGCAACTGGTCAAC+CGG | - | chr3.1:84409432-84409451 | None:intergenic | 55.0% | |
| ATGCGACTGCGACATCAACG+AGG | - | chr3.1:84410303-84410322 | None:intergenic | 55.0% | |
| CTGTGGTTTCGATGGAGGAC+AGG | - | chr3.1:84409237-84409256 | None:intergenic | 55.0% | |
| CTTCGCTGTGGTTTCGATGG+AGG | - | chr3.1:84409242-84409261 | None:intergenic | 55.0% | |
| GAAAGAGTGGTGAGGATCGG+AGG | - | chr3.1:84409067-84409086 | None:intergenic | 55.0% | |
| GAGCCATTGACCGGAGGATT+GGG | - | chr3.1:84409208-84409227 | None:intergenic | 55.0% | |
| GGTATGAAGGCCGAGGAAAG+CGG | + | chr3.1:84409285-84409304 | MS.gene32677:CDS | 55.0% | |
| GGTTTCGATGGAGGACAGGA+CGG | - | chr3.1:84409233-84409252 | None:intergenic | 55.0% | |
| GTGTTTGAGAATCGCCACGC+CGG | + | chr3.1:84409410-84409429 | MS.gene32677:CDS | 55.0% | |
| GTTCCCAATCCTCCGGTCAA+TGG | + | chr3.1:84409202-84409221 | MS.gene32677:CDS | 55.0% | |
| GTTTCGATGGAGGACAGGAC+GGG | - | chr3.1:84409232-84409251 | None:intergenic | 55.0% | |
| TCCTTGTCCTGTACACCCTC+CGG | + | chr3.1:84410827-84410846 | MS.gene32677:intron | 55.0% | |
| TGTTGCCTCACCGCTTTCCT+CGG | - | chr3.1:84409298-84409317 | None:intergenic | 55.0% | |
| TTGACCGGAGGATTGGGAAC+CGG | - | chr3.1:84409202-84409221 | None:intergenic | 55.0% | |
| ! | GGTGTCGAGGTTGAGGAAGT+TGG | - | chr3.1:84409178-84409197 | None:intergenic | 55.0% |
| ! | GGTGTCGAGGTTGCGAAGAA+GGG | - | chr3.1:84409118-84409137 | None:intergenic | 55.0% |
| ! | GTTGTTGTTGGTTGTGGCGG+TGG | - | chr3.1:84409151-84409170 | None:intergenic | 55.0% |
| ! | GTTTCACCAGGGGAAGGTAC+AGG | + | chr3.1:84411836-84411855 | MS.gene32677:CDS | 55.0% |
| ! | TGGTGTCGAGGTTGCGAAGA+AGG | - | chr3.1:84409119-84409138 | None:intergenic | 55.0% |
| ! | TTAGTGACCGGAGGGTGTAC+AGG | - | chr3.1:84410837-84410856 | None:intergenic | 55.0% |
| !! | AGGGCGTTGTTGAGCCAGTT+AGG | - | chr3.1:84409099-84409118 | None:intergenic | 55.0% |
| AGGACGGGAGAGCCATTGAC+CGG | - | chr3.1:84409217-84409236 | None:intergenic | 60.0% | |
| CAGCGGAGGGAGTGATGAAC+TGG | + | chr3.1:84409316-84409335 | MS.gene32677:CDS | 60.0% | |
| CGTCGTCGATGACTTCGCTG+TGG | - | chr3.1:84409254-84409273 | None:intergenic | 60.0% | |
| CTCTCTCTCTGGACTCTGGG+TGG | + | chr3.1:84409671-84409690 | MS.gene32677:intron | 60.0% | |
| GAGTGGTGAGGATCGGAGGT+TGG | - | chr3.1:84409063-84409082 | None:intergenic | 60.0% | |
| GGAAAGCGGTGAGGCAACAG+CGG | + | chr3.1:84409299-84409318 | MS.gene32677:CDS | 60.0% | |
| GTTGCTCCTGTACCTTCCCC+TGG | - | chr3.1:84411845-84411864 | None:intergenic | 60.0% | |
| TTCCTCAACCTCGACACCGC+CGG | + | chr3.1:84409180-84409199 | MS.gene32677:CDS | 60.0% | |
| ! | ACCGGAGGGTGTACAGGACA+AGG | - | chr3.1:84410831-84410850 | None:intergenic | 60.0% |
| !! | CGTTACCGGCGCTGGTATGA+AGG | + | chr3.1:84409272-84409291 | MS.gene32677:CDS | 60.0% |
| !! | TGGCGTTGACGTTGGTGTCG+AGG | - | chr3.1:84409131-84409150 | None:intergenic | 60.0% |
| AAGCGGTGAGGCAACAGCGG+AGG | + | chr3.1:84409302-84409321 | MS.gene32677:CDS | 65.0% | |
| ACCGGAGGATTGGGAACCGG+CGG | - | chr3.1:84409199-84409218 | None:intergenic | 65.0% | |
| ACGGGAGAGCCATTGACCGG+AGG | - | chr3.1:84409214-84409233 | None:intergenic | 65.0% | |
| AGCGGTGAGGCAACAGCGGA+GGG | + | chr3.1:84409303-84409322 | MS.gene32677:CDS | 65.0% | |
| ATCGACGACGTTACCGGCGC+TGG | + | chr3.1:84409264-84409283 | MS.gene32677:CDS | 65.0% | |
| CTCGGCCTTCATACCAGCGC+CGG | - | chr3.1:84409280-84409299 | None:intergenic | 65.0% | |
| GAAGGCCGAGGAAAGCGGTG+AGG | + | chr3.1:84409290-84409309 | MS.gene32677:CDS | 65.0% | |
| ! | AACCGGCGGTGTCGAGGTTG+AGG | - | chr3.1:84409185-84409204 | None:intergenic | 65.0% |
| ! | ATTGGGAACCGGCGGTGTCG+AGG | - | chr3.1:84409191-84409210 | None:intergenic | 65.0% |
| !! | ACCGCCGGTTCCCAATCCTC+CGG | + | chr3.1:84409195-84409214 | MS.gene32677:CDS | 65.0% |
| !! | GAGCGTCGATCCTGGGCAAC+TGG | - | chr3.1:84409440-84409459 | None:intergenic | 65.0% |
| !! | GCCAGCTGAGCGTCGATCCT+GGG | - | chr3.1:84409447-84409466 | None:intergenic | 65.0% |
| !! | TGCCAGCTGAGCGTCGATCC+TGG | - | chr3.1:84409448-84409467 | None:intergenic | 65.0% |
| !! | TGTGGCGGTGGCGTTGACGT+TGG | - | chr3.1:84409139-84409158 | None:intergenic | 65.0% |
| GCCCAGGATCGACGCTCAGC+TGG | + | chr3.1:84409443-84409462 | MS.gene32677:CDS | 70.0% | |
| GGGCAACTGGTCAACCGGCG+TGG | - | chr3.1:84409427-84409446 | None:intergenic | 70.0% | |
| ! | CGCCGGTTGACCAGTTGCCC+AGG | + | chr3.1:84409427-84409446 | MS.gene32677:CDS | 70.0% |
| !! | CGGCGCTGGTATGAAGGCCG+AGG | + | chr3.1:84409278-84409297 | MS.gene32677:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 84408997 | 84413133 | 84408997 | ID=MS.gene32677 |
| chr3.1 | mRNA | 84408997 | 84413133 | 84408997 | ID=MS.gene32677.t1;Parent=MS.gene32677 |
| chr3.1 | exon | 84408997 | 84409557 | 84408997 | ID=MS.gene32677.t1.exon1;Parent=MS.gene32677.t1 |
| chr3.1 | CDS | 84408997 | 84409557 | 84408997 | ID=cds.MS.gene32677.t1;Parent=MS.gene32677.t1 |
| chr3.1 | exon | 84410317 | 84410437 | 84410317 | ID=MS.gene32677.t1.exon2;Parent=MS.gene32677.t1 |
| chr3.1 | CDS | 84410317 | 84410437 | 84410317 | ID=cds.MS.gene32677.t1;Parent=MS.gene32677.t1 |
| chr3.1 | exon | 84411834 | 84412033 | 84411834 | ID=MS.gene32677.t1.exon3;Parent=MS.gene32677.t1 |
| chr3.1 | CDS | 84411834 | 84412033 | 84411834 | ID=cds.MS.gene32677.t1;Parent=MS.gene32677.t1 |
| chr3.1 | exon | 84412266 | 84412397 | 84412266 | ID=MS.gene32677.t1.exon4;Parent=MS.gene32677.t1 |
| chr3.1 | CDS | 84412266 | 84412397 | 84412266 | ID=cds.MS.gene32677.t1;Parent=MS.gene32677.t1 |
| chr3.1 | exon | 84412879 | 84413133 | 84412879 | ID=MS.gene32677.t1.exon5;Parent=MS.gene32677.t1 |
| chr3.1 | CDS | 84412879 | 84413133 | 84412879 | ID=cds.MS.gene32677.t1;Parent=MS.gene32677.t1 |
| Gene Sequence |
| Protein sequence |
