Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38724.t1 | XP_003603025.1 | 97.2 | 216 | 6 | 0 | 1 | 216 | 16 | 231 | 1.90E-114 | 421.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38724.t1 | Q1G3M3 | 52.0 | 221 | 92 | 4 | 1 | 216 | 16 | 227 | 1.2e-51 | 204.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38724.t1 | G7J6B9 | 97.2 | 216 | 6 | 0 | 1 | 216 | 16 | 231 | 1.4e-114 | 421.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene38724.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene38724 | 0.857345 | 1.74E-62 | -1.69E-46 |
| MS.gene049596 | MS.gene38724 | 0.809536 | 1.80E-50 | -1.69E-46 |
| MS.gene049844 | MS.gene38724 | 0.800278 | 1.55E-48 | -1.69E-46 |
| MS.gene050874 | MS.gene38724 | 0.815885 | 7.35E-52 | -1.69E-46 |
| MS.gene050875 | MS.gene38724 | 0.853705 | 2.00E-61 | -1.69E-46 |
| MS.gene05124 | MS.gene38724 | 0.841299 | 5.17E-58 | -1.69E-46 |
| MS.gene051914 | MS.gene38724 | 0.891638 | 3.31E-74 | -1.69E-46 |
| MS.gene052143 | MS.gene38724 | 0.815617 | 8.43E-52 | -1.69E-46 |
| MS.gene052308 | MS.gene38724 | 0.86754 | 1.27E-65 | -1.69E-46 |
| MS.gene052367 | MS.gene38724 | 0.835571 | 1.55E-56 | -1.69E-46 |
| MS.gene053173 | MS.gene38724 | 0.89514 | 1.27E-75 | -1.69E-46 |
| MS.gene053348 | MS.gene38724 | 0.82849 | 8.73E-55 | -1.69E-46 |
| MS.gene053416 | MS.gene38724 | 0.843933 | 1.03E-58 | -1.69E-46 |
| MS.gene053417 | MS.gene38724 | 0.842115 | 3.15E-58 | -1.69E-46 |
| MS.gene054018 | MS.gene38724 | 0.813071 | 3.08E-51 | -1.69E-46 |
| MS.gene054459 | MS.gene38724 | 0.817348 | 3.45E-52 | -1.69E-46 |
| MS.gene054551 | MS.gene38724 | 0.882565 | 9.37E-71 | -1.69E-46 |
| MS.gene054593 | MS.gene38724 | 0.865285 | 6.60E-65 | -1.69E-46 |
| MS.gene054633 | MS.gene38724 | 0.992431 | 2.99E-193 | -1.69E-46 |
| MS.gene054662 | MS.gene38724 | 0.854727 | 1.02E-61 | -1.69E-46 |
| MS.gene054941 | MS.gene38724 | 0.804067 | 2.58E-49 | -1.69E-46 |
| MS.gene055308 | MS.gene38724 | 0.852607 | 4.13E-61 | -1.69E-46 |
| MS.gene055578 | MS.gene38724 | 0.857522 | 1.54E-62 | -1.69E-46 |
| MS.gene056041 | MS.gene38724 | 0.840943 | 6.41E-58 | -1.69E-46 |
| MS.gene056266 | MS.gene38724 | -0.802645 | 5.09E-49 | -1.69E-46 |
| MS.gene05640 | MS.gene38724 | 0.881105 | 3.16E-70 | -1.69E-46 |
| MS.gene056526 | MS.gene38724 | 0.81853 | 1.87E-52 | -1.69E-46 |
| MS.gene056528 | MS.gene38724 | 0.827829 | 1.26E-54 | -1.69E-46 |
| MS.gene05652 | MS.gene38724 | 0.845379 | 4.21E-59 | -1.69E-46 |
| MS.gene056694 | MS.gene38724 | 0.803798 | 2.94E-49 | -1.69E-46 |
| MS.gene05732 | MS.gene38724 | 0.804919 | 1.71E-49 | -1.69E-46 |
| MS.gene057367 | MS.gene38724 | 0.840153 | 1.03E-57 | -1.69E-46 |
| MS.gene057458 | MS.gene38724 | 0.830141 | 3.47E-55 | -1.69E-46 |
| MS.gene058013 | MS.gene38724 | 0.813982 | 1.94E-51 | -1.69E-46 |
| MS.gene058128 | MS.gene38724 | 0.857124 | 2.02E-62 | -1.69E-46 |
| MS.gene058828 | MS.gene38724 | 0.800517 | 1.39E-48 | -1.69E-46 |
| MS.gene058853 | MS.gene38724 | 0.866396 | 2.94E-65 | -1.69E-46 |
| MS.gene05926 | MS.gene38724 | 0.822369 | 2.46E-53 | -1.69E-46 |
| MS.gene059304 | MS.gene38724 | 0.805826 | 1.11E-49 | -1.69E-46 |
| MS.gene059553 | MS.gene38724 | 0.839491 | 1.54E-57 | -1.69E-46 |
| MS.gene059616 | MS.gene38724 | 0.829856 | 4.07E-55 | -1.69E-46 |
| MS.gene060275 | MS.gene38724 | 0.804797 | 1.82E-49 | -1.69E-46 |
| MS.gene060473 | MS.gene38724 | 0.819598 | 1.07E-52 | -1.69E-46 |
| MS.gene060565 | MS.gene38724 | 0.804235 | 2.38E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene38724 | 0.888243 | 7.02E-73 | -1.69E-46 |
| MS.gene061099 | MS.gene38724 | 0.834052 | 3.75E-56 | -1.69E-46 |
| MS.gene061260 | MS.gene38724 | 0.834543 | 2.82E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38724.t1 | MTR_3g101520 | 99.537 | 216 | 1 | 0 | 1 | 216 | 16 | 231 | 6.78e-163 | 449 |
| MS.gene38724.t1 | MTR_3g101520 | 95.833 | 216 | 1 | 1 | 1 | 216 | 16 | 223 | 1.92e-152 | 422 |
| MS.gene38724.t1 | MTR_2g102450 | 43.519 | 216 | 114 | 5 | 3 | 212 | 22 | 235 | 2.34e-44 | 153 |
| MS.gene38724.t1 | MTR_2g102450 | 54.167 | 120 | 55 | 0 | 93 | 212 | 62 | 181 | 3.11e-39 | 138 |
| MS.gene38724.t1 | MTR_4g008310 | 47.934 | 121 | 63 | 0 | 93 | 213 | 191 | 311 | 3.79e-33 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38724.t1 | AT5G42700 | 55.450 | 211 | 87 | 2 | 1 | 210 | 17 | 221 | 2.08e-72 | 219 |
| MS.gene38724.t1 | AT3G19184 | 56.621 | 219 | 85 | 4 | 1 | 216 | 16 | 227 | 1.41e-71 | 219 |
| MS.gene38724.t1 | AT3G19184 | 56.621 | 219 | 85 | 4 | 1 | 216 | 16 | 227 | 1.60e-71 | 219 |
| MS.gene38724.t1 | AT5G42700 | 55.056 | 178 | 74 | 1 | 33 | 210 | 5 | 176 | 4.51e-62 | 192 |
| MS.gene38724.t1 | AT5G58280 | 37.019 | 208 | 121 | 4 | 11 | 212 | 49 | 252 | 3.61e-35 | 126 |
| MS.gene38724.t1 | AT5G58280 | 36.842 | 209 | 121 | 5 | 11 | 212 | 49 | 253 | 2.04e-33 | 122 |
| MS.gene38724.t1 | AT5G58280 | 35.945 | 217 | 123 | 5 | 1 | 211 | 13 | 219 | 8.20e-33 | 119 |
Find 53 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTGAAATTCTATTTCT+AGG | 0.204642 | 3.3:-84100249 | None:intergenic |
| CTCATGTCACTGGTGGATTC+TGG | 0.287144 | 3.3:+84100508 | MS.gene38724:CDS |
| TGAGTCTCCAACTACATATT+TGG | 0.308296 | 3.3:+84102866 | MS.gene38724:CDS |
| ACAACGAGCTCTTTCTTGAT+AGG | 0.331075 | 3.3:-84100063 | None:intergenic |
| GTCATCACTTCGTCCCGTTT+TGG | 0.333776 | 3.3:-84102822 | None:intergenic |
| TTACAGACTTCTTTGTAAAC+AGG | 0.370188 | 3.3:-84100123 | None:intergenic |
| CTTGATAGGGGTGCGAGGTT+TGG | 0.379420 | 3.3:-84100049 | None:intergenic |
| TAGAGTGAATGAGGGTAAAC+AGG | 0.402295 | 3.3:+84103461 | MS.gene38724:CDS |
| CTCGTTGTTGTTCGAAGATC+CGG | 0.408143 | 3.3:+84100078 | MS.gene38724:CDS |
| TACCTAGAAATAGAATTTCA+AGG | 0.423170 | 3.3:+84100247 | MS.gene38724:CDS |
| ACATATTTGGCTCACAAAAC+AGG | 0.425458 | 3.3:+84102879 | MS.gene38724:CDS |
| AGTTAAACGCACTGCATTCA+AGG | 0.432696 | 3.3:+84102974 | MS.gene38724:CDS |
| ATTGCTCATAACCTTGTTGA+TGG | 0.442206 | 3.3:+84102930 | MS.gene38724:CDS |
| AGCATTGACTTGACAAAAGT+TGG | 0.443741 | 3.3:-84100480 | None:intergenic |
| TGCGTCCGACGAAGCTAGAA+TGG | 0.446516 | 3.3:+84100407 | MS.gene38724:CDS |
| CAACGAGCTCTTTCTTGATA+GGG | 0.456259 | 3.3:-84100062 | None:intergenic |
| ATCCACCAGTGACATGAGAT+TGG | 0.459124 | 3.3:-84100503 | None:intergenic |
| GGAAGAAAATCAAAAGAGAA+TGG | 0.470843 | 3.3:+84099954 | MS.gene38724:CDS |
| GCCTTCCAAATCATTTCTGC+AGG | 0.472041 | 3.3:+84102790 | MS.gene38724:CDS |
| ATGACTTTAATTGATGAGGA+TGG | 0.480177 | 3.3:+84102840 | MS.gene38724:CDS |
| GTGAAGTGATTGAGAGAGCT+TGG | 0.490518 | 3.3:-84099992 | None:intergenic |
| GTGGTGGATATGATAAGTAC+AGG | 0.491955 | 3.3:+84100364 | MS.gene38724:CDS |
| TGCTTCCATTCTAGCTTCGT+CGG | 0.496827 | 3.3:-84100412 | None:intergenic |
| GTACATTATTAGAGTGAATG+AGG | 0.501375 | 3.3:+84103452 | MS.gene38724:CDS |
| GTAAACAGGAGCAGGCATAT+TGG | 0.504680 | 3.3:-84100109 | None:intergenic |
| TGGATGATCAGAATCTAAAT+CGG | 0.505469 | 3.3:-84100460 | None:intergenic |
| GGTGCGAGGTTTGGAAGGTG+AGG | 0.511953 | 3.3:-84100040 | None:intergenic |
| CACAAAACAGGACTTAGTGC+TGG | 0.519162 | 3.3:+84102891 | MS.gene38724:CDS |
| ATGCTCCAATCTCATGTCAC+TGG | 0.520101 | 3.3:+84100498 | MS.gene38724:CDS |
| ACTTCTTTGTAAACAGGAGC+AGG | 0.521856 | 3.3:-84100117 | None:intergenic |
| CTCCAATCTCATGTCACTGG+TGG | 0.526085 | 3.3:+84100501 | MS.gene38724:CDS |
| CGAAGCTAGAATGGAAGCAA+TGG | 0.532880 | 3.3:+84100416 | MS.gene38724:CDS |
| TTGTGAGCCAAATATGTAGT+TGG | 0.534295 | 3.3:-84102873 | None:intergenic |
| TTGCTCATAACCTTGTTGAT+GGG | 0.536210 | 3.3:+84102931 | MS.gene38724:CDS |
| GACTTTAATTGATGAGGATG+GGG | 0.536969 | 3.3:+84102842 | MS.gene38724:CDS |
| AGGCATATTGGCGACACGAC+CGG | 0.537317 | 3.3:-84100097 | None:intergenic |
| TCCTGCAGAAATGATTTGGA+AGG | 0.537387 | 3.3:-84102791 | None:intergenic |
| GTGCGAGGTTTGGAAGGTGA+GGG | 0.543398 | 3.3:-84100039 | None:intergenic |
| TGACTTTAATTGATGAGGAT+GGG | 0.546142 | 3.3:+84102841 | MS.gene38724:CDS |
| TGTCACTGGTGGATTCTGGC+TGG | 0.546764 | 3.3:+84100512 | MS.gene38724:CDS |
| TGCTCATAACCTTGTTGATG+GGG | 0.557712 | 3.3:+84102932 | MS.gene38724:CDS |
| ATAGGGGTGCGAGGTTTGGA+AGG | 0.572029 | 3.3:-84100045 | None:intergenic |
| AACGAGCTCTTTCTTGATAG+GGG | 0.578112 | 3.3:-84100061 | None:intergenic |
| GGACTTAGTGCTGGATGGAG+AGG | 0.579069 | 3.3:+84102900 | MS.gene38724:CDS |
| GTACAGGGATTATTCGAAGC+GGG | 0.591336 | 3.3:+84100380 | MS.gene38724:CDS |
| TACATTATTAGAGTGAATGA+GGG | 0.593532 | 3.3:+84103453 | MS.gene38724:CDS |
| AAACAGGACTTAGTGCTGGA+TGG | 0.601864 | 3.3:+84102895 | MS.gene38724:CDS |
| AGTGATGACTTTAATTGATG+AGG | 0.610611 | 3.3:+84102836 | MS.gene38724:CDS |
| TAGAATGGAAGCAATGGAGA+AGG | 0.631866 | 3.3:+84100422 | MS.gene38724:CDS |
| TGGTGGATATGATAAGTACA+GGG | 0.664434 | 3.3:+84100365 | MS.gene38724:CDS |
| TCTTTCTTGATAGGGGTGCG+AGG | 0.664811 | 3.3:-84100054 | None:intergenic |
| TTAAAGCATCCCCATCAACA+AGG | 0.671282 | 3.3:-84102941 | None:intergenic |
| AGTACAGGGATTATTCGAAG+CGG | 0.715139 | 3.3:+84100379 | MS.gene38724:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTAATTTATTTGTACA+AGG | - | chr3.3:84102655-84102674 | None:intergenic | 10.0% |
| !! | AACATAACATATATAATAGT+TGG | - | chr3.3:84102547-84102566 | None:intergenic | 15.0% |
| !! | ACATAACATATATAATAGTT+GGG | - | chr3.3:84102546-84102565 | None:intergenic | 15.0% |
| !! | ATACAACTACAATTTATAAT+TGG | + | chr3.3:84102737-84102756 | MS.gene38724:intron | 15.0% |
| !! | TATAAAGATGTTAAAAAAAG+AGG | + | chr3.3:84100657-84100676 | MS.gene38724:intron | 15.0% |
| !! | TATTATATATGTTATGTTGA+GGG | + | chr3.3:84102549-84102568 | MS.gene38724:intron | 15.0% |
| !! | TGATAACATGTATTATAAAT+AGG | - | chr3.3:84103183-84103202 | None:intergenic | 15.0% |
| !! | TTGACAAATTTAAATCTATA+TGG | + | chr3.3:84102509-84102528 | MS.gene38724:intron | 15.0% |
| !! | TTTCATAATATAAAATGAAG+TGG | + | chr3.3:84101306-84101325 | MS.gene38724:intron | 15.0% |
| !!! | AAGTATCTTATTTTTATGAA+AGG | - | chr3.3:84101053-84101072 | None:intergenic | 15.0% |
| !!! | AGTATCTTATTTTTATGAAA+GGG | - | chr3.3:84101052-84101071 | None:intergenic | 15.0% |
| !!! | TTATAATTGGTTAATCATTT+TGG | + | chr3.3:84102750-84102769 | MS.gene38724:intron | 15.0% |
| !! | AAAAAACATACATTAGACAA+TGG | - | chr3.3:84101366-84101385 | None:intergenic | 20.0% |
| !! | AATACTACTGATATTTATCT+AGG | + | chr3.3:84103336-84103355 | MS.gene38724:intron | 20.0% |
| !! | AGTAAATAATCTAATATAGG+TGG | - | chr3.3:84101571-84101590 | None:intergenic | 20.0% |
| !! | AGTAATAGAGAAAGATAAAA+TGG | - | chr3.3:84100171-84100190 | None:intergenic | 20.0% |
| !! | CCACATTGAAATAAATATAA+TGG | - | chr3.3:84103244-84103263 | None:intergenic | 20.0% |
| !! | CCATTATATTTATTTCAATG+TGG | + | chr3.3:84103241-84103260 | MS.gene38724:intron | 20.0% |
| !! | CTATTATATATGTTATGTTG+AGG | + | chr3.3:84102548-84102567 | MS.gene38724:intron | 20.0% |
| !! | GAGAGTAAATAATCTAATAT+AGG | - | chr3.3:84101574-84101593 | None:intergenic | 20.0% |
| !! | GTAAATAATCTAATATAGGT+GGG | - | chr3.3:84101570-84101589 | None:intergenic | 20.0% |
| !! | TATATTTATTTCAATGTGGA+GGG | + | chr3.3:84103245-84103264 | MS.gene38724:intron | 20.0% |
| !! | TTATATTTATTTCAATGTGG+AGG | + | chr3.3:84103244-84103263 | MS.gene38724:intron | 20.0% |
| !!! | ATAAATAGGAGTATTGAAAA+AGG | - | chr3.3:84103169-84103188 | None:intergenic | 20.0% |
| !!! | ATTAACATTCTCTCTTTTAA+TGG | - | chr3.3:84101088-84101107 | None:intergenic | 20.0% |
| !!! | GAAAATGTAATGAATTTTTC+TGG | - | chr3.3:84101145-84101164 | None:intergenic | 20.0% |
| !!! | GTATCTTATTTTTATGAAAG+GGG | - | chr3.3:84101051-84101070 | None:intergenic | 20.0% |
| !!! | TAAATAGGAGTATTGAAAAA+GGG | - | chr3.3:84103168-84103187 | None:intergenic | 20.0% |
| !!! | TATTCATTGATTAACATATG+TGG | - | chr3.3:84103404-84103423 | None:intergenic | 20.0% |
| !!! | TCTATTTCTAGGTATTTTAA+CGG | - | chr3.3:84100241-84100260 | None:intergenic | 20.0% |
| ! | AAAGATAAAATGGTGAATGT+GGG | - | chr3.3:84100161-84100180 | None:intergenic | 25.0% |
| ! | AAGAGATACAAAATTTGAGT+TGG | - | chr3.3:84102274-84102293 | None:intergenic | 25.0% |
| ! | ATAATGAGATTGCTAACTAT+AGG | - | chr3.3:84103380-84103399 | None:intergenic | 25.0% |
| ! | ATGTTAATCAATGAATAGTG+TGG | + | chr3.3:84103407-84103426 | MS.gene38724:intron | 25.0% |
| ! | CGAATAAAATTATGTCATTC+TGG | + | chr3.3:84102589-84102608 | MS.gene38724:intron | 25.0% |
| ! | CTTTATAAACGAAAACACAT+AGG | - | chr3.3:84102412-84102431 | None:intergenic | 25.0% |
| ! | GAATATAGCACGATTAAATA+TGG | - | chr3.3:84103052-84103071 | None:intergenic | 25.0% |
| ! | TACATTATTAGAGTGAATGA+GGG | + | chr3.3:84103453-84103472 | MS.gene38724:CDS | 25.0% |
| ! | TACCTAGAAATAGAATTTCA+AGG | + | chr3.3:84100247-84100266 | MS.gene38724:CDS | 25.0% |
| ! | TGAAGAAAGAAAATTGACAT+TGG | - | chr3.3:84101231-84101250 | None:intergenic | 25.0% |
| ! | TGTCTATTGTATGTTAGTAT+GGG | + | chr3.3:84101398-84101417 | MS.gene38724:intron | 25.0% |
| ! | TTGTCTATTGTATGTTAGTA+TGG | + | chr3.3:84101397-84101416 | MS.gene38724:intron | 25.0% |
| !! | AACCTTGAAATTCTATTTCT+AGG | - | chr3.3:84100252-84100271 | None:intergenic | 25.0% |
| !! | AATGTAATGAATTTTTCTGG+TGG | - | chr3.3:84101142-84101161 | None:intergenic | 25.0% |
| !! | CATTTTGTATGTATAAATGC+TGG | + | chr3.3:84100712-84100731 | MS.gene38724:intron | 25.0% |
| !! | GTTCAACAAAATCTTGTTTA+AGG | + | chr3.3:84101470-84101489 | MS.gene38724:intron | 25.0% |
| !!! | AGTTCACTTTTTTATTACTG+TGG | + | chr3.3:84100603-84100622 | MS.gene38724:intron | 25.0% |
| !!! | ATAAATGCTGGTTTTGTTAT+TGG | + | chr3.3:84100724-84100743 | MS.gene38724:intron | 25.0% |
| !!! | ATATTTTTTGTGTGTAGATG+TGG | + | chr3.3:84100345-84100364 | MS.gene38724:intron | 25.0% |
| !!! | ATTTGTTTTGGCTTTAAATG+AGG | - | chr3.3:84101719-84101738 | None:intergenic | 25.0% |
| AAAACCTATACTACTCTCTA+TGG | + | chr3.3:84101180-84101199 | MS.gene38724:intron | 30.0% | |
| AACATTCGTTGTAACTACTT+TGG | + | chr3.3:84101329-84101348 | MS.gene38724:intron | 30.0% | |
| AAGCCAAAACAAATCTTTGT+AGG | + | chr3.3:84101725-84101744 | MS.gene38724:intron | 30.0% | |
| AATTTATTTGTACAAGGCTC+TGG | - | chr3.3:84102649-84102668 | None:intergenic | 30.0% | |
| ACATTCGTTGTAACTACTTT+GGG | + | chr3.3:84101330-84101349 | MS.gene38724:intron | 30.0% | |
| AGATGAATGTTATATGCATG+TGG | + | chr3.3:84103121-84103140 | MS.gene38724:intron | 30.0% | |
| AGGTACTTGAAAAAGAGTAA+CGG | - | chr3.3:84100844-84100863 | None:intergenic | 30.0% | |
| AGTGATGACTTTAATTGATG+AGG | + | chr3.3:84102836-84102855 | MS.gene38724:CDS | 30.0% | |
| ATGACTTTAATTGATGAGGA+TGG | + | chr3.3:84102840-84102859 | MS.gene38724:CDS | 30.0% | |
| CATTTCCATGGACTTAAAAT+AGG | - | chr3.3:84102127-84102146 | None:intergenic | 30.0% | |
| GAAAGATAAAATGGTGAATG+TGG | - | chr3.3:84100162-84100181 | None:intergenic | 30.0% | |
| GCATTCAAAGCAATAACTAA+AGG | - | chr3.3:84100864-84100883 | None:intergenic | 30.0% | |
| GCTAGTTGTATTGAATTGAA+AGG | - | chr3.3:84102680-84102699 | None:intergenic | 30.0% | |
| GGAAGAAAATCAAAAGAGAA+TGG | + | chr3.3:84099954-84099973 | MS.gene38724:CDS | 30.0% | |
| GTACATTATTAGAGTGAATG+AGG | + | chr3.3:84103452-84103471 | MS.gene38724:CDS | 30.0% | |
| TATATGCATGTGGCTAATAA+TGG | + | chr3.3:84103131-84103150 | MS.gene38724:intron | 30.0% | |
| TGACTTTAATTGATGAGGAT+GGG | + | chr3.3:84102841-84102860 | MS.gene38724:CDS | 30.0% | |
| TGGATGATCAGAATCTAAAT+CGG | - | chr3.3:84100463-84100482 | None:intergenic | 30.0% | |
| TTACAGACTTCTTTGTAAAC+AGG | - | chr3.3:84100126-84100145 | None:intergenic | 30.0% | |
| TTTAATCGTGCTATATTCCT+TGG | + | chr3.3:84103054-84103073 | MS.gene38724:intron | 30.0% | |
| ! | AGAGATTAGTTACTGCTAAA+GGG | + | chr3.3:84102613-84102632 | MS.gene38724:intron | 30.0% |
| ! | GAATGTTCTTTTGAATACCA+AGG | - | chr3.3:84103074-84103093 | None:intergenic | 30.0% |
| ! | GGTTGCTAAAATTTTCTTTC+AGG | + | chr3.3:84103428-84103447 | MS.gene38724:intron | 30.0% |
| ! | TTGTAACTACTTTGGGAATT+TGG | + | chr3.3:84101337-84101356 | MS.gene38724:intron | 30.0% |
| ! | TTTTTCCTGCAGAAATGATT+TGG | - | chr3.3:84102798-84102817 | None:intergenic | 30.0% |
| !! | AATGAATTTTTCTGGTGGAA+GGG | - | chr3.3:84101137-84101156 | None:intergenic | 30.0% |
| !! | GTTCCTACAAAGATTTGTTT+TGG | - | chr3.3:84101731-84101750 | None:intergenic | 30.0% |
| !! | TAATGAATTTTTCTGGTGGA+AGG | - | chr3.3:84101138-84101157 | None:intergenic | 30.0% |
| !! | TTGCTTTGAATGCTTTTCAA+TGG | + | chr3.3:84100871-84100890 | MS.gene38724:intron | 30.0% |
| !!! | GGTTTTGTTATTGGTTTCAA+TGG | + | chr3.3:84100733-84100752 | MS.gene38724:intron | 30.0% |
| !!! | TTTTTTTTGTGTGTGTGTGT+TGG | + | chr3.3:84101626-84101645 | MS.gene38724:intron | 30.0% |
| AAAGTTAGTAGTCACTAGTC+AGG | - | chr3.3:84101267-84101286 | None:intergenic | 35.0% | |
| AATAAACAGAGTTCAAGCCA+TGG | - | chr3.3:84100763-84100782 | None:intergenic | 35.0% | |
| AATGCTCCCATTGAATAAAG+GGG | - | chr3.3:84100986-84101005 | None:intergenic | 35.0% | |
| AATGCTTCCATTGAGCAAAA+AGG | - | chr3.3:84100920-84100939 | None:intergenic | 35.0% | |
| ACTTAAGTCTATAGCTCACA+TGG | + | chr3.3:84102030-84102049 | MS.gene38724:intron | 35.0% | |
| AGAATGCTCCCATTGAATAA+AGG | - | chr3.3:84100988-84101007 | None:intergenic | 35.0% | |
| AGATAGAAAACACACCACAA+AGG | + | chr3.3:84102061-84102080 | MS.gene38724:intron | 35.0% | |
| ATGCTTCCATTGAGCAAAAA+GGG | - | chr3.3:84100919-84100938 | None:intergenic | 35.0% | |
| ATTGCTCATAACCTTGTTGA+TGG | + | chr3.3:84102930-84102949 | MS.gene38724:CDS | 35.0% | |
| GAATGCTCCCATTGAATAAA+GGG | - | chr3.3:84100987-84101006 | None:intergenic | 35.0% | |
| GACTTTAATTGATGAGGATG+GGG | + | chr3.3:84102842-84102861 | MS.gene38724:CDS | 35.0% | |
| TAAAATGGTGAATGTGGGTT+AGG | - | chr3.3:84100156-84100175 | None:intergenic | 35.0% | |
| TCAAGTCCCCTTTATTCAAT+GGG | + | chr3.3:84100977-84100996 | MS.gene38724:intron | 35.0% | |
| TGAGTCTCCAACTACATATT+TGG | + | chr3.3:84102866-84102885 | MS.gene38724:CDS | 35.0% | |
| TTCAAGTCCCCTTTATTCAA+TGG | + | chr3.3:84100976-84100995 | MS.gene38724:intron | 35.0% | |
| TTGCTCATAACCTTGTTGAT+GGG | + | chr3.3:84102931-84102950 | MS.gene38724:CDS | 35.0% | |
| TTGTGAGCCAAATATGTAGT+TGG | - | chr3.3:84102876-84102895 | None:intergenic | 35.0% | |
| TTGTTTGTTCATTCATGCCT+TGG | + | chr3.3:84103011-84103030 | MS.gene38724:intron | 35.0% | |
| ! | AAAATGGTGAATGTGGGTTA+GGG | - | chr3.3:84100155-84100174 | None:intergenic | 35.0% |
| ! | AAGGTTTGTTCTTTCTTCTG+TGG | + | chr3.3:84100266-84100285 | MS.gene38724:intron | 35.0% |
| ! | ACATATTTGGCTCACAAAAC+AGG | + | chr3.3:84102879-84102898 | MS.gene38724:CDS | 35.0% |
| ! | ATCTAATATAGGTGGGTTTC+TGG | - | chr3.3:84101563-84101582 | None:intergenic | 35.0% |
| ! | CAGAGATTAGTTACTGCTAA+AGG | + | chr3.3:84102612-84102631 | MS.gene38724:intron | 35.0% |
| ! | CTTTTCAATGGAAGTTGTTG+AGG | + | chr3.3:84100883-84100902 | MS.gene38724:intron | 35.0% |
| ! | GCTTATGCACTTTTACTGAA+TGG | + | chr3.3:84100790-84100809 | MS.gene38724:intron | 35.0% |
| ! | TGATTACTTGGGTTAGACTA+GGG | - | chr3.3:84102348-84102367 | None:intergenic | 35.0% |
| ! | TGGTGGATATGATAAGTACA+GGG | + | chr3.3:84100365-84100384 | MS.gene38724:CDS | 35.0% |
| ! | TTGGTTTCAATGGTTTTCCA+TGG | + | chr3.3:84100743-84100762 | MS.gene38724:intron | 35.0% |
| !! | AGCATTGACTTGACAAAAGT+TGG | - | chr3.3:84100483-84100502 | None:intergenic | 35.0% |
| !! | ATGAATTTTTCTGGTGGAAG+GGG | - | chr3.3:84101136-84101155 | None:intergenic | 35.0% |
| !!! | TTTTTTGTGTGTAGATGTGG+TGG | + | chr3.3:84100348-84100367 | MS.gene38724:intron | 35.0% |
| AACACATAGGTGTACATCAG+AGG | - | chr3.3:84102399-84102418 | None:intergenic | 40.0% | |
| AACGAGCTCTTTCTTGATAG+GGG | - | chr3.3:84100064-84100083 | None:intergenic | 40.0% | |
| AATCTCACCGTTCATTTGTG+GGG | + | chr3.3:84101692-84101711 | MS.gene38724:intron | 40.0% | |
| ACAACGAGCTCTTTCTTGAT+AGG | - | chr3.3:84100066-84100085 | None:intergenic | 40.0% | |
| ACCCAAGTTGTAATTGTGAC+TGG | + | chr3.3:84101840-84101859 | MS.gene38724:intron | 40.0% | |
| ACTTCTTTGTAAACAGGAGC+AGG | - | chr3.3:84100120-84100139 | None:intergenic | 40.0% | |
| AGATAGAACACACACCAGAA+AGG | + | chr3.3:84102185-84102204 | MS.gene38724:intron | 40.0% | |
| AGGAACTAACCCACCAAAAT+TGG | + | chr3.3:84101745-84101764 | MS.gene38724:intron | 40.0% | |
| AGGGGCTTGAAAGATTGTAA+CGG | - | chr3.3:84101033-84101052 | None:intergenic | 40.0% | |
| AGTACAGGGATTATTCGAAG+CGG | + | chr3.3:84100379-84100398 | MS.gene38724:CDS | 40.0% | |
| AGTTAAACGCACTGCATTCA+AGG | + | chr3.3:84102974-84102993 | MS.gene38724:CDS | 40.0% | |
| CAACGAGCTCTTTCTTGATA+GGG | - | chr3.3:84100065-84100084 | None:intergenic | 40.0% | |
| CAATCTCACCGTTCATTTGT+GGG | + | chr3.3:84101691-84101710 | MS.gene38724:intron | 40.0% | |
| CAGGAAAAACCTTCCAAAAC+GGG | + | chr3.3:84102809-84102828 | MS.gene38724:CDS | 40.0% | |
| GCAGGAAAAACCTTCCAAAA+CGG | + | chr3.3:84102808-84102827 | MS.gene38724:CDS | 40.0% | |
| GCCAGTCACAATTACAACTT+GGG | - | chr3.3:84101844-84101863 | None:intergenic | 40.0% | |
| GGTAGATGTGTTAAACACCA+AGG | - | chr3.3:84103031-84103050 | None:intergenic | 40.0% | |
| GTCACAATTACAACTTGGGT+TGG | - | chr3.3:84101840-84101859 | None:intergenic | 40.0% | |
| GTGTGTGTGTGTGATTACTT+GGG | - | chr3.3:84102359-84102378 | None:intergenic | 40.0% | |
| TAACCCACCAAAATTGGCAT+TGG | + | chr3.3:84101751-84101770 | MS.gene38724:intron | 40.0% | |
| TAGAATGGAAGCAATGGAGA+AGG | + | chr3.3:84100422-84100441 | MS.gene38724:CDS | 40.0% | |
| TAGAGTGAATGAGGGTAAAC+AGG | + | chr3.3:84103461-84103480 | MS.gene38724:CDS | 40.0% | |
| TGCATTCTTTGCTTCCTTTC+TGG | - | chr3.3:84102202-84102221 | None:intergenic | 40.0% | |
| TGCATTCTTTGCTTCCTTTG+TGG | - | chr3.3:84102078-84102097 | None:intergenic | 40.0% | |
| TGCCAGTCACAATTACAACT+TGG | - | chr3.3:84101845-84101864 | None:intergenic | 40.0% | |
| TGCTCATAACCTTGTTGATG+GGG | + | chr3.3:84102932-84102951 | MS.gene38724:CDS | 40.0% | |
| TGCTTCCATTGAGCAAAAAG+GGG | - | chr3.3:84100918-84100937 | None:intergenic | 40.0% | |
| TGTGTGTGTGTGTGATTACT+TGG | - | chr3.3:84102360-84102379 | None:intergenic | 40.0% | |
| ! | AGTGTGTTACTGTTGAGTGA+GGG | - | chr3.3:84102311-84102330 | None:intergenic | 40.0% |
| ! | ATTCCCTCCAATGCCAATTT+TGG | - | chr3.3:84101761-84101780 | None:intergenic | 40.0% |
| ! | GTGATTACTTGGGTTAGACT+AGG | - | chr3.3:84102349-84102368 | None:intergenic | 40.0% |
| ! | TCCTGCAGAAATGATTTGGA+AGG | - | chr3.3:84102794-84102813 | None:intergenic | 40.0% |
| ! | TGCTGTTAGCTTGAAACCTT+GGG | - | chr3.3:84101812-84101831 | None:intergenic | 40.0% |
| ! | TTAAAGCATCCCCATCAACA+AGG | - | chr3.3:84102944-84102963 | None:intergenic | 40.0% |
| ! | TTATGCCCCTTTTTGCTCAA+TGG | + | chr3.3:84100910-84100929 | MS.gene38724:intron | 40.0% |
| !! | GTGGTGGATATGATAAGTAC+AGG | + | chr3.3:84100364-84100383 | MS.gene38724:CDS | 40.0% |
| !! | TCGCACCTATTTTAAGTCCA+TGG | + | chr3.3:84102119-84102138 | MS.gene38724:intron | 40.0% |
| !!! | AAGGTGAGGGTTTTGAAATG+GGG | - | chr3.3:84100029-84100048 | None:intergenic | 40.0% |
| !!! | GAAGGTGAGGGTTTTGAAAT+GGG | - | chr3.3:84100030-84100049 | None:intergenic | 40.0% |
| ACGCACAGTTGCTTGCTTAT+CGG | + | chr3.3:84101519-84101538 | MS.gene38724:intron | 45.0% | |
| ATCACACACACACACACACA+CGG | + | chr3.3:84102364-84102383 | MS.gene38724:intron | 45.0% | |
| ATCCACCAGTGACATGAGAT+TGG | - | chr3.3:84100506-84100525 | None:intergenic | 45.0% | |
| ATCTCACCGTTCATTTGTGG+GGG | + | chr3.3:84101693-84101712 | MS.gene38724:intron | 45.0% | |
| ATGAAAACCGAGACCTTGAG+AGG | + | chr3.3:84101779-84101798 | MS.gene38724:intron | 45.0% | |
| ATGCTCCAATCTCATGTCAC+TGG | + | chr3.3:84100498-84100517 | MS.gene38724:CDS | 45.0% | |
| ATTGGACCCCTCGAATTAGT+CGG | - | chr3.3:84101675-84101694 | None:intergenic | 45.0% | |
| CACAAAACAGGACTTAGTGC+TGG | + | chr3.3:84102891-84102910 | MS.gene38724:CDS | 45.0% | |
| CCAATCTCACCGTTCATTTG+TGG | + | chr3.3:84101690-84101709 | MS.gene38724:intron | 45.0% | |
| CCACAAATGAACGGTGAGAT+TGG | - | chr3.3:84101693-84101712 | None:intergenic | 45.0% | |
| CGAAGCTAGAATGGAAGCAA+TGG | + | chr3.3:84100416-84100435 | MS.gene38724:CDS | 45.0% | |
| CGCTCCATAGAGAGTAGTAT+AGG | - | chr3.3:84101187-84101206 | None:intergenic | 45.0% | |
| GCCTTCCAAATCATTTCTGC+AGG | + | chr3.3:84102790-84102809 | MS.gene38724:CDS | 45.0% | |
| GGGGACTTGAAAGATTGTAG+CGG | - | chr3.3:84100967-84100986 | None:intergenic | 45.0% | |
| GTAAACAGGAGCAGGCATAT+TGG | - | chr3.3:84100112-84100131 | None:intergenic | 45.0% | |
| GTACAGGGATTATTCGAAGC+GGG | + | chr3.3:84100380-84100399 | MS.gene38724:CDS | 45.0% | |
| GTGAAGTGATTGAGAGAGCT+TGG | - | chr3.3:84099995-84100014 | None:intergenic | 45.0% | |
| GTGTGAGCTATCAACTCACA+AGG | - | chr3.3:84102155-84102174 | None:intergenic | 45.0% | |
| GTGTGTGTGTGTTGGAAACT+CGG | + | chr3.3:84101634-84101653 | MS.gene38724:intron | 45.0% | |
| TGTGTTGGAAACTCGGTATC+TGG | + | chr3.3:84101641-84101660 | MS.gene38724:intron | 45.0% | |
| TTAGAACAGCACACAGCACA+TGG | - | chr3.3:84103215-84103234 | None:intergenic | 45.0% | |
| TTTGGCATGCCTCAACAACA+GGG | + | chr3.3:84102768-84102787 | MS.gene38724:intron | 45.0% | |
| ! | AAACAGGACTTAGTGCTGGA+TGG | + | chr3.3:84102895-84102914 | MS.gene38724:CDS | 45.0% |
| ! | CCACCAAAATTGGCATTGGA+GGG | + | chr3.3:84101755-84101774 | MS.gene38724:intron | 45.0% |
| ! | CTCGTTGTTGTTCGAAGATC+CGG | + | chr3.3:84100078-84100097 | MS.gene38724:CDS | 45.0% |
| ! | GAGTGTGTTACTGTTGAGTG+AGG | - | chr3.3:84102312-84102331 | None:intergenic | 45.0% |
| ! | GCTGTTAGCTTGAAACCTTG+GGG | - | chr3.3:84101811-84101830 | None:intergenic | 45.0% |
| ! | GTGCTGTTAGCTTGAAACCT+TGG | - | chr3.3:84101813-84101832 | None:intergenic | 45.0% |
| ! | TTTTGGCATGCCTCAACAAC+AGG | + | chr3.3:84102767-84102786 | MS.gene38724:intron | 45.0% |
| !! | AATTACAACTTGGGTTGGCC+TGG | - | chr3.3:84101835-84101854 | None:intergenic | 45.0% |
| !! | CACAAGGAAGAGCATTTCCA+TGG | - | chr3.3:84102139-84102158 | None:intergenic | 45.0% |
| !! | CCTCCAATGCCAATTTTGGT+GGG | - | chr3.3:84101757-84101776 | None:intergenic | 45.0% |
| !! | TGCTTCCATTCTAGCTTCGT+CGG | - | chr3.3:84100415-84100434 | None:intergenic | 45.0% |
| !!! | AGGTGAGGGTTTTGAAATGG+GGG | - | chr3.3:84100028-84100047 | None:intergenic | 45.0% |
| !!! | GGAAGGTGAGGGTTTTGAAA+TGG | - | chr3.3:84100031-84100050 | None:intergenic | 45.0% |
| ATGAGGCCCCCACAAATGAA+CGG | - | chr3.3:84101702-84101721 | None:intergenic | 50.0% | |
| CAAGGACCGACTAATTCGAG+GGG | + | chr3.3:84101666-84101685 | MS.gene38724:intron | 50.0% | |
| CCAAGGACCGACTAATTCGA+GGG | + | chr3.3:84101665-84101684 | MS.gene38724:intron | 50.0% | |
| CCTCGAATTAGTCGGTCCTT+GGG | - | chr3.3:84101667-84101686 | None:intergenic | 50.0% | |
| CTCCAATCTCATGTCACTGG+TGG | + | chr3.3:84100501-84100520 | MS.gene38724:CDS | 50.0% | |
| GGTTTCAAGCTAACAGCACC+AGG | + | chr3.3:84101814-84101833 | MS.gene38724:intron | 50.0% | |
| TCACACACACACACACACAC+GGG | + | chr3.3:84102365-84102384 | MS.gene38724:intron | 50.0% | |
| TTTGGAAGGCCCTGTTGTTG+AGG | - | chr3.3:84102780-84102799 | None:intergenic | 50.0% | |
| ! | CCCACCAAAATTGGCATTGG+AGG | + | chr3.3:84101754-84101773 | MS.gene38724:intron | 50.0% |
| ! | CCCTCCAATGCCAATTTTGG+TGG | - | chr3.3:84101758-84101777 | None:intergenic | 50.0% |
| ! | GTCATCACTTCGTCCCGTTT+TGG | - | chr3.3:84102825-84102844 | None:intergenic | 50.0% |
| ! | TCTTTCTTGATAGGGGTGCG+AGG | - | chr3.3:84100057-84100076 | None:intergenic | 50.0% |
| !! | CTCATGTCACTGGTGGATTC+TGG | + | chr3.3:84100508-84100527 | MS.gene38724:CDS | 50.0% |
| !! | GGTGAATGTGGGTTAGGGTT+TGG | - | chr3.3:84100150-84100169 | None:intergenic | 50.0% |
| !! | TCACTTCGTCCCGTTTTGGA+AGG | - | chr3.3:84102821-84102840 | None:intergenic | 50.0% |
| !! | TTTTCTGGTGGAAGGGGAGA+GGG | - | chr3.3:84101130-84101149 | None:intergenic | 50.0% |
| !! | TTTTTCTGGTGGAAGGGGAG+AGG | - | chr3.3:84101131-84101150 | None:intergenic | 50.0% |
| ACACACACACACACACGGGT+TGG | + | chr3.3:84102369-84102388 | MS.gene38724:intron | 55.0% | |
| AGGCATATTGGCGACACGAC+CGG | - | chr3.3:84100100-84100119 | None:intergenic | 55.0% | |
| CCCAAGGACCGACTAATTCG+AGG | + | chr3.3:84101664-84101683 | MS.gene38724:intron | 55.0% | |
| CCCTCGAATTAGTCGGTCCT+TGG | - | chr3.3:84101668-84101687 | None:intergenic | 55.0% | |
| GAAACTCGGTATCTGGCCCA+AGG | + | chr3.3:84101648-84101667 | MS.gene38724:intron | 55.0% | |
| GTGCGAGGTTTGGAAGGTGA+GGG | - | chr3.3:84100042-84100061 | None:intergenic | 55.0% | |
| GTGTGCTCCTCTCAAGGTCT+CGG | - | chr3.3:84101789-84101808 | None:intergenic | 55.0% | |
| TGCGTCCGACGAAGCTAGAA+TGG | + | chr3.3:84100407-84100426 | MS.gene38724:CDS | 55.0% | |
| ! | ATAGGGGTGCGAGGTTTGGA+AGG | - | chr3.3:84100048-84100067 | None:intergenic | 55.0% |
| ! | CTTGATAGGGGTGCGAGGTT+TGG | - | chr3.3:84100052-84100071 | None:intergenic | 55.0% |
| ! | GGACTTAGTGCTGGATGGAG+AGG | + | chr3.3:84102900-84102919 | MS.gene38724:CDS | 55.0% |
| ! | TTTCTGGTGGAAGGGGAGAG+GGG | - | chr3.3:84101129-84101148 | None:intergenic | 55.0% |
| !! | TGTCACTGGTGGATTCTGGC+TGG | + | chr3.3:84100512-84100531 | MS.gene38724:CDS | 55.0% |
| CTTGGGGTGTGCTCCTCTCA+AGG | - | chr3.3:84101795-84101814 | None:intergenic | 60.0% | |
| GGTGCGAGGTTTGGAAGGTG+AGG | - | chr3.3:84100043-84100062 | None:intergenic | 60.0% | |
| ! | CTTGAGAGGAGCACACCCCA+AGG | + | chr3.3:84101793-84101812 | MS.gene38724:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 84099952 | 84103491 | 84099952 | ID=MS.gene38724 |
| chr3.3 | mRNA | 84099952 | 84103491 | 84099952 | ID=MS.gene38724.t1;Parent=MS.gene38724 |
| chr3.3 | exon | 84099952 | 84100137 | 84099952 | ID=MS.gene38724.t1.exon1;Parent=MS.gene38724.t1 |
| chr3.3 | CDS | 84099952 | 84100137 | 84099952 | ID=cds.MS.gene38724.t1;Parent=MS.gene38724.t1 |
| chr3.3 | exon | 84100225 | 84100268 | 84100225 | ID=MS.gene38724.t1.exon2;Parent=MS.gene38724.t1 |
| chr3.3 | CDS | 84100225 | 84100268 | 84100225 | ID=cds.MS.gene38724.t1;Parent=MS.gene38724.t1 |
| chr3.3 | exon | 84100362 | 84100533 | 84100362 | ID=MS.gene38724.t1.exon3;Parent=MS.gene38724.t1 |
| chr3.3 | CDS | 84100362 | 84100533 | 84100362 | ID=cds.MS.gene38724.t1;Parent=MS.gene38724.t1 |
| chr3.3 | exon | 84102789 | 84102995 | 84102789 | ID=MS.gene38724.t1.exon4;Parent=MS.gene38724.t1 |
| chr3.3 | CDS | 84102789 | 84102995 | 84102789 | ID=cds.MS.gene38724.t1;Parent=MS.gene38724.t1 |
| chr3.3 | exon | 84103450 | 84103491 | 84103450 | ID=MS.gene38724.t1.exon5;Parent=MS.gene38724.t1 |
| chr3.3 | CDS | 84103450 | 84103491 | 84103450 | ID=cds.MS.gene38724.t1;Parent=MS.gene38724.t1 |
| Gene Sequence |
| Protein sequence |
