Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40259.t1 | XP_013462044.1 | 98.7 | 232 | 3 | 0 | 1 | 232 | 1 | 232 | 7.90E-130 | 473 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40259.t1 | Q9XI47 | 44.4 | 248 | 107 | 4 | 12 | 230 | 11 | 256 | 1.8e-50 | 200.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40259.t1 | A0A072V207 | 98.7 | 232 | 3 | 0 | 1 | 232 | 1 | 232 | 5.7e-130 | 473.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene40259 | 0.838403 | 2.94E-57 | -1.69E-46 |
| MS.gene049343 | MS.gene40259 | 0.817799 | 2.73E-52 | -1.69E-46 |
| MS.gene049711 | MS.gene40259 | 0.801125 | 1.04E-48 | -1.69E-46 |
| MS.gene049825 | MS.gene40259 | 0.827825 | 1.26E-54 | -1.69E-46 |
| MS.gene049873 | MS.gene40259 | 0.823248 | 1.53E-53 | -1.69E-46 |
| MS.gene050355 | MS.gene40259 | 0.816623 | 5.03E-52 | -1.69E-46 |
| MS.gene050559 | MS.gene40259 | 0.830883 | 2.29E-55 | -1.69E-46 |
| MS.gene050561 | MS.gene40259 | 0.818107 | 2.33E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene40259 | 0.802945 | 4.41E-49 | -1.69E-46 |
| MS.gene051363 | MS.gene40259 | 0.800982 | 1.12E-48 | -1.69E-46 |
| MS.gene051597 | MS.gene40259 | 0.82222 | 2.66E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene40259 | 0.859762 | 3.30E-63 | -1.69E-46 |
| MS.gene051832 | MS.gene40259 | 0.804421 | 2.18E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene40259 | 0.81856 | 1.84E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene40259 | 0.803316 | 3.69E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene40259 | 0.823243 | 1.54E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene40259 | 0.82901 | 6.54E-55 | -1.69E-46 |
| MS.gene053006 | MS.gene40259 | 0.823428 | 1.39E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene40259 | 0.833976 | 3.91E-56 | -1.69E-46 |
| MS.gene05365 | MS.gene40259 | 0.809628 | 1.72E-50 | -1.69E-46 |
| MS.gene053995 | MS.gene40259 | 0.812211 | 4.75E-51 | -1.69E-46 |
| MS.gene054576 | MS.gene40259 | 0.812214 | 4.75E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene40259 | 0.824765 | 6.76E-54 | -1.69E-46 |
| MS.gene055166 | MS.gene40259 | 0.805864 | 1.09E-49 | -1.69E-46 |
| MS.gene055586 | MS.gene40259 | 0.883065 | 6.15E-71 | -1.69E-46 |
| MS.gene055589 | MS.gene40259 | 0.842173 | 3.04E-58 | -1.69E-46 |
| MS.gene055808 | MS.gene40259 | 0.809561 | 1.78E-50 | -1.69E-46 |
| MS.gene055841 | MS.gene40259 | 0.824978 | 6.02E-54 | -1.69E-46 |
| MS.gene056091 | MS.gene40259 | 0.806954 | 6.40E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene40259 | 0.804835 | 1.78E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene40259 | 0.800452 | 1.43E-48 | -1.69E-46 |
| MS.gene05686 | MS.gene40259 | 0.812845 | 3.45E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene40259 | 0.823812 | 1.13E-53 | -1.69E-46 |
| MS.gene057026 | MS.gene40259 | 0.815185 | 1.05E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene40259 | 0.82121 | 4.56E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene40259 | 0.821224 | 4.52E-53 | -1.69E-46 |
| MS.gene058498 | MS.gene40259 | 0.803282 | 3.76E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene40259 | -0.839659 | 1.39E-57 | -1.69E-46 |
| MS.gene059935 | MS.gene40259 | 0.867582 | 1.23E-65 | -1.69E-46 |
| MS.gene060365 | MS.gene40259 | 0.826671 | 2.39E-54 | -1.69E-46 |
| MS.gene060429 | MS.gene40259 | 0.80223 | 6.19E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene40259 | 0.807744 | 4.35E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene40259 | 0.820259 | 7.54E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene40259 | 0.811653 | 6.29E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40259.t1 | MTR_3g110260 | 98.707 | 232 | 3 | 0 | 1 | 232 | 1 | 232 | 2.77e-174 | 478 |
| MS.gene40259.t1 | MTR_8g061040 | 40.076 | 262 | 125 | 4 | 1 | 232 | 1 | 260 | 3.43e-65 | 206 |
| MS.gene40259.t1 | MTR_8g014075 | 39.095 | 243 | 126 | 3 | 8 | 230 | 7 | 247 | 1.14e-50 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40259.t1 | AT1G15215 | 44.355 | 248 | 107 | 4 | 12 | 230 | 11 | 256 | 7.55e-66 | 204 |
| MS.gene40259.t1 | AT3G18380 | 39.068 | 279 | 118 | 4 | 1 | 232 | 1 | 274 | 1.50e-61 | 196 |
| MS.gene40259.t1 | AT1G15215 | 44.118 | 238 | 102 | 4 | 12 | 220 | 11 | 246 | 3.75e-61 | 192 |
| MS.gene40259.t1 | AT1G15215 | 43.802 | 242 | 105 | 4 | 12 | 224 | 11 | 250 | 8.28e-61 | 191 |
| MS.gene40259.t1 | AT3G18380 | 38.929 | 280 | 118 | 5 | 1 | 232 | 1 | 275 | 1.02e-59 | 192 |
| MS.gene40259.t1 | AT3G18380 | 39.416 | 274 | 122 | 7 | 1 | 232 | 1 | 272 | 7.62e-59 | 189 |
| MS.gene40259.t1 | AT1G15215 | 35.484 | 155 | 69 | 4 | 12 | 137 | 11 | 163 | 1.79e-18 | 79.7 |
Find 45 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTCAGATTGAGAAAA+TGG | 0.159542 | 3.3:-91163167 | MS.gene40259:intron |
| GAACATAGTCTCCAACTTTC+AGG | 0.226239 | 3.3:+91161183 | None:intergenic |
| GAAAACAGACTTGAAACTTT+TGG | 0.264857 | 3.3:+91163081 | None:intergenic |
| CGAAAGGAACTGAGCGTTCC+CGG | 0.320535 | 3.3:+91161225 | None:intergenic |
| AGAGTCAGATTTGTTGGGTT+TGG | 0.339869 | 3.3:-91161287 | MS.gene40259:CDS |
| AGCTTATCATCTGGTCGTGC+TGG | 0.372792 | 3.3:-91162986 | MS.gene40259:CDS |
| AGACTATGTTCTGTGCTTCC+AGG | 0.376950 | 3.3:-91161171 | MS.gene40259:intron |
| AAAAGTACCTCAAAATGAAT+TGG | 0.377374 | 3.3:-91162784 | MS.gene40259:CDS |
| GGATATCATGCATTCTCCTT+TGG | 0.380382 | 3.3:+91161019 | None:intergenic |
| GAAGTCAGAGTCAGATTTGT+TGG | 0.404906 | 3.3:-91161293 | MS.gene40259:CDS |
| AAATGTGACACCTGCAACCT+CGG | 0.422569 | 3.3:+91160998 | None:intergenic |
| CTGGGAAACCTGTCATCAAA+TGG | 0.437508 | 3.3:-91162967 | MS.gene40259:CDS |
| GTCATGTATATCTAAGATCT+TGG | 0.438432 | 3.3:+91160826 | None:intergenic |
| GTAGGAAGGTACCTCAGAAT+TGG | 0.440658 | 3.3:+91163253 | None:intergenic |
| ACCTGAGTCCATTTGATGAC+AGG | 0.456466 | 3.3:+91162959 | None:intergenic |
| TTCCAACTCTGATGAGTCTC+GGG | 0.471097 | 3.3:+91162302 | None:intergenic |
| AAGTCAGAGTCAGATTTGTT+GGG | 0.473120 | 3.3:-91161292 | MS.gene40259:CDS |
| TTGTCTTGTAGCTTATCATC+TGG | 0.473796 | 3.3:-91162995 | MS.gene40259:intron |
| CTCTGACCTTCCTTGCATTG+AGG | 0.498752 | 3.3:+91162756 | None:intergenic |
| GCACACAGATTTCTTAGCAC+AGG | 0.502053 | 3.3:-91161411 | MS.gene40259:CDS |
| CACACAGATTTCTTAGCACA+GGG | 0.505636 | 3.3:-91161410 | MS.gene40259:CDS |
| TTGCTAAGGGAATCATCAAA+AGG | 0.520977 | 3.3:-91163139 | MS.gene40259:CDS |
| ATTCCAACTCTGATGAGTCT+CGG | 0.521550 | 3.3:+91162301 | None:intergenic |
| CTCAGTTCCTTTCGAGAACA+CGG | 0.527058 | 3.3:-91161216 | MS.gene40259:CDS |
| ATTTGTTGGGTTTGGAGCTG+AGG | 0.536262 | 3.3:-91161279 | MS.gene40259:CDS |
| TGCATGATATCCGAGGTTGC+AGG | 0.537901 | 3.3:-91161008 | MS.gene40259:CDS |
| GCATATGTGCTCACCATGCT+TGG | 0.545702 | 3.3:+91162256 | None:intergenic |
| CACCCGAGACTCATCAGAGT+TGG | 0.547609 | 3.3:-91162304 | MS.gene40259:CDS |
| GCTTATCATCTGGTCGTGCT+GGG | 0.552961 | 3.3:-91162985 | MS.gene40259:CDS |
| TTCTGGATTCACCAATTCTG+AGG | 0.559706 | 3.3:-91163264 | MS.gene40259:intron |
| GAGTGTTCCAACCTGAAAGT+TGG | 0.564740 | 3.3:-91161194 | MS.gene40259:CDS |
| ATAGTCTCCAACTTTCAGGT+TGG | 0.570305 | 3.3:+91161187 | None:intergenic |
| ATTGGTTTCTCCTCAATGCA+AGG | 0.583252 | 3.3:-91162766 | MS.gene40259:CDS |
| TCTAGGAAAGAGTTCGCTTG+AGG | 0.588698 | 3.3:-91160864 | MS.gene40259:intron |
| GAACACTCCGTGTTCTCGAA+AGG | 0.592495 | 3.3:+91161209 | None:intergenic |
| ACCTGTCATCAAATGGACTC+AGG | 0.592515 | 3.3:-91162960 | MS.gene40259:intron |
| CTCACATTGTAGAGATCCAA+AGG | 0.594628 | 3.3:-91161035 | MS.gene40259:CDS |
| TGGAGCTGAGGAAGATGAGT+GGG | 0.595934 | 3.3:-91161267 | MS.gene40259:CDS |
| GATCTTCGAAAGACCAAGCA+TGG | 0.600049 | 3.3:-91162269 | MS.gene40259:intron |
| GTTTCTCCTCAATGCAAGGA+AGG | 0.620933 | 3.3:-91162762 | MS.gene40259:intron |
| ATATCTAAGATCTTGGTCTG+TGG | 0.670538 | 3.3:+91160833 | None:intergenic |
| TTGGAGCTGAGGAAGATGAG+TGG | 0.671942 | 3.3:-91161268 | MS.gene40259:CDS |
| AGGAGAATGCATGATATCCG+AGG | 0.689625 | 3.3:-91161015 | MS.gene40259:CDS |
| ACACAGATTTCTTAGCACAG+GGG | 0.750555 | 3.3:-91161409 | MS.gene40259:CDS |
| ATATGATCACGACAACAACG+AGG | 0.764532 | 3.3:-91160968 | MS.gene40259:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATTTAATGATTTAGT+TGG | + | chr3.3:91162574-91162593 | None:intergenic | 15.0% |
| !! | ATATAATTGTAAAAACTTAC+AGG | + | chr3.3:91162755-91162774 | None:intergenic | 15.0% |
| !! | ATATATACAACTTAAATGAA+TGG | + | chr3.3:91162438-91162457 | None:intergenic | 15.0% |
| !! | CTAACTAAATAAAAAAGTAA+AGG | + | chr3.3:91161719-91161738 | None:intergenic | 15.0% |
| !! | TAAAAAATAACAATTTAGTG+TGG | + | chr3.3:91162033-91162052 | None:intergenic | 15.0% |
| !! | TAAAATTCCCATAAAAATAA+AGG | + | chr3.3:91161293-91161312 | None:intergenic | 15.0% |
| !! | TTATGGTTTATAGTTAAAAT+TGG | + | chr3.3:91162493-91162512 | None:intergenic | 15.0% |
| !!! | AATTGTTCCTTTATTTTTAT+GGG | - | chr3.3:91161283-91161302 | MS.gene40259:CDS | 15.0% |
| !!! | TAATTGTTCCTTTATTTTTA+TGG | - | chr3.3:91161282-91161301 | MS.gene40259:CDS | 15.0% |
| !!! | TTTTCTTTTTGTTATATTCT+AGG | - | chr3.3:91163255-91163274 | MS.gene40259:intron | 15.0% |
| !! | AAATGTTTAATGCATAATTG+AGG | + | chr3.3:91162166-91162185 | None:intergenic | 20.0% |
| !! | ATTATAAATCACACATGAAA+TGG | + | chr3.3:91163226-91163245 | None:intergenic | 20.0% |
| !! | CTGAAATGAAATAAGATTAA+AGG | + | chr3.3:91160959-91160978 | None:intergenic | 20.0% |
| !! | TGAAATAAGATTAAAGGTAA+CGG | + | chr3.3:91160953-91160972 | None:intergenic | 20.0% |
| !!! | AACTTTTTCACATCTATAAT+AGG | - | chr3.3:91162218-91162237 | MS.gene40259:intron | 20.0% |
| !!! | ATTTTTTAGCATGTATGATA+CGG | + | chr3.3:91162311-91162330 | None:intergenic | 20.0% |
| !!! | TAAATTTTAATGTCACTGAA+AGG | - | chr3.3:91161959-91161978 | MS.gene40259:intron | 20.0% |
| !!! | TAATTAAAAGTGCATTTCAA+AGG | + | chr3.3:91161264-91161283 | None:intergenic | 20.0% |
| ! | AAGATTCTTTGACTAAAATC+TGG | - | chr3.3:91162403-91162422 | MS.gene40259:intron | 25.0% |
| ! | AGAAAATGGAAAAATTGCTA+AGG | - | chr3.3:91160983-91161002 | MS.gene40259:CDS | 25.0% |
| ! | AGAGAGTAAAAGAAAAAAGT+AGG | + | chr3.3:91160904-91160923 | None:intergenic | 25.0% |
| ! | AGTAAAAGAAAAAAGTAGGA+AGG | + | chr3.3:91160900-91160919 | None:intergenic | 25.0% |
| ! | ATACATGCTAAAAAATTGTG+AGG | - | chr3.3:91162315-91162334 | MS.gene40259:intron | 25.0% |
| ! | ATGAAGCTATAAACAATCTA+TGG | + | chr3.3:91162085-91162104 | None:intergenic | 25.0% |
| ! | ATGTAATTTACTTCAGAATG+CGG | - | chr3.3:91161536-91161555 | MS.gene40259:intron | 25.0% |
| ! | CCATAAAACAGATAGTATAT+AGG | - | chr3.3:91162507-91162526 | MS.gene40259:intron | 25.0% |
| ! | GAAAATGGAAAAATTGCTAA+GGG | - | chr3.3:91160984-91161003 | MS.gene40259:CDS | 25.0% |
| ! | GTAGTATTCAGTTAATTATC+TGG | - | chr3.3:91162254-91162273 | MS.gene40259:intron | 25.0% |
| ! | GTTGTATATATGTATATGTG+TGG | - | chr3.3:91162447-91162466 | MS.gene40259:intron | 25.0% |
| ! | TCAACATAAAAAATTCAGTC+CGG | - | chr3.3:91162892-91162911 | MS.gene40259:intron | 25.0% |
| ! | TTCATTTCAGATTGAGAAAA+TGG | - | chr3.3:91160969-91160988 | MS.gene40259:CDS | 25.0% |
| !! | CCTATATACTATCTGTTTTA+TGG | + | chr3.3:91162510-91162529 | None:intergenic | 25.0% |
| !! | CTTTTATAACTATACATGGA+TGG | - | chr3.3:91162378-91162397 | MS.gene40259:intron | 25.0% |
| !! | TCGTCTTTTATAACTATACA+TGG | - | chr3.3:91162374-91162393 | MS.gene40259:intron | 25.0% |
| !!! | AAAAGTACCTCAAAATGAAT+TGG | - | chr3.3:91161352-91161371 | MS.gene40259:intron | 25.0% |
| !!! | AATTCATTTTGAGGTACTTT+TGG | + | chr3.3:91161353-91161372 | None:intergenic | 25.0% |
| !!! | ATGTTAAACTGCATTGATTA+TGG | - | chr3.3:91161586-91161605 | MS.gene40259:intron | 25.0% |
| !!! | GTAAGAGTTTTGAAAATCAT+TGG | + | chr3.3:91162549-91162568 | None:intergenic | 25.0% |
| !!! | TAGTTTTTGGTAAAAATCGA+GGG | + | chr3.3:91161034-91161053 | None:intergenic | 25.0% |
| !!! | TTTTTTAGCATGTATGATAC+GGG | + | chr3.3:91162310-91162329 | None:intergenic | 25.0% |
| AAAATCTAGTACACCCTATA+AGG | + | chr3.3:91162792-91162811 | None:intergenic | 30.0% | |
| AAATCTAGTACACCCTATAA+GGG | + | chr3.3:91162791-91162810 | None:intergenic | 30.0% | |
| AACTATCCTAACAACGTTTA+AGG | + | chr3.3:91161417-91161436 | None:intergenic | 30.0% | |
| AAGTAAAGGAAAACAGAAAG+TGG | + | chr3.3:91161705-91161724 | None:intergenic | 30.0% | |
| AATCATTGGAGGAAGAAAAT+TGG | + | chr3.3:91162535-91162554 | None:intergenic | 30.0% | |
| ACATTACCTTAAACGTTGTT+AGG | - | chr3.3:91161408-91161427 | MS.gene40259:CDS | 30.0% | |
| AGTAAAGGAAAACAGAAAGT+GGG | + | chr3.3:91161704-91161723 | None:intergenic | 30.0% | |
| ATATATGCAGAATTCACGAA+TGG | + | chr3.3:91161930-91161949 | None:intergenic | 30.0% | |
| CAACATAAAAAATTCAGTCC+GGG | - | chr3.3:91162893-91162912 | MS.gene40259:intron | 30.0% | |
| TACAATTTGTCCAAGTCTAA+AGG | - | chr3.3:91162670-91162689 | MS.gene40259:intron | 30.0% | |
| TCCTGTGTATTTCAATGTTT+GGG | - | chr3.3:91161471-91161490 | MS.gene40259:intron | 30.0% | |
| TTAAACGTTGTTAGGATAGT+TGG | - | chr3.3:91161416-91161435 | MS.gene40259:CDS | 30.0% | |
| TTGGTGAATCCAGAAAAAAT+AGG | + | chr3.3:91160867-91160886 | None:intergenic | 30.0% | |
| ! | AACAACGTTTAAGGTAATGT+AGG | + | chr3.3:91161408-91161427 | None:intergenic | 30.0% |
| ! | AACAGTTTCTCCTTTTGTAA+AGG | - | chr3.3:91162821-91162840 | MS.gene40259:CDS | 30.0% |
| ! | ATCATTGTTTCTTTGTTGGT+CGG | - | chr3.3:91161085-91161104 | MS.gene40259:intron | 30.0% |
| ! | CTCAATCATTGTTTCTTTGT+TGG | - | chr3.3:91161081-91161100 | MS.gene40259:intron | 30.0% |
| ! | GAAAACAGACTTGAAACTTT+TGG | + | chr3.3:91161058-91161077 | None:intergenic | 30.0% |
| ! | GACAGTTTCAATGTGTTTTT+AGG | - | chr3.3:91163048-91163067 | MS.gene40259:intron | 30.0% |
| ! | GGGAATTTTAGATACATAGT+TGG | - | chr3.3:91161303-91161322 | MS.gene40259:intron | 30.0% |
| !!! | AGAGTTTTGAAAATCATTGG+AGG | + | chr3.3:91162546-91162565 | None:intergenic | 30.0% |
| !!! | CTAGTTTTTGGTAAAAATCG+AGG | + | chr3.3:91161035-91161054 | None:intergenic | 30.0% |
| !!! | CTTCAATGCCATTTTTACTT+TGG | - | chr3.3:91162055-91162074 | MS.gene40259:intron | 30.0% |
| !!! | GTTTTAAGAAAATGACACCA+AGG | - | chr3.3:91161625-91161644 | MS.gene40259:intron | 30.0% |
| !!! | TGAAACTTTTGGCTAGTTTT+TGG | + | chr3.3:91161047-91161066 | None:intergenic | 30.0% |
| !!! | TTTCAATGTGTTTTTAGGAG+AGG | - | chr3.3:91163053-91163072 | MS.gene40259:intron | 30.0% |
| AAACTTTGACCTAAATCACC+TGG | + | chr3.3:91162986-91163005 | None:intergenic | 35.0% | |
| AAAGGAGAAACTGTTTAAGC+TGG | + | chr3.3:91162816-91162835 | None:intergenic | 35.0% | |
| AATCTAGTACACCCTATAAG+GGG | + | chr3.3:91162790-91162809 | None:intergenic | 35.0% | |
| ACATTGAAATACACAGGACA+AGG | + | chr3.3:91161469-91161488 | None:intergenic | 35.0% | |
| ACTCTGACTTCCTTTACAAA+AGG | + | chr3.3:91162834-91162853 | None:intergenic | 35.0% | |
| ATGGACCACCAAAGTAAAAA+TGG | + | chr3.3:91162066-91162085 | None:intergenic | 35.0% | |
| ATTTCAATGTTTGGGCCTTT+AGG | - | chr3.3:91161479-91161498 | MS.gene40259:intron | 35.0% | |
| CAGTTAATTATCTGGTGTTC+TGG | - | chr3.3:91162262-91162281 | MS.gene40259:intron | 35.0% | |
| CTCAAATATTTGCGAACACA+AGG | + | chr3.3:91161748-91161767 | None:intergenic | 35.0% | |
| GAAAAAATAGGTCTGTTACG+AGG | + | chr3.3:91160855-91160874 | None:intergenic | 35.0% | |
| GATGTCCTTTAACTGTTCTA+TGG | + | chr3.3:91163014-91163033 | None:intergenic | 35.0% | |
| GTCCTGTGTATTTCAATGTT+TGG | - | chr3.3:91161470-91161489 | MS.gene40259:intron | 35.0% | |
| TTCATAGCTTTCCCCTTATA+GGG | - | chr3.3:91162776-91162795 | MS.gene40259:CDS | 35.0% | |
| TTGCTAAGGGAATCATCAAA+AGG | - | chr3.3:91160997-91161016 | MS.gene40259:CDS | 35.0% | |
| TTGTCTTGTAGCTTATCATC+TGG | - | chr3.3:91161141-91161160 | MS.gene40259:intron | 35.0% | |
| TTTCAATGTTTGGGCCTTTA+GGG | - | chr3.3:91161480-91161499 | MS.gene40259:intron | 35.0% | |
| ! | AAGTCAGAGTCAGATTTGTT+GGG | - | chr3.3:91162844-91162863 | MS.gene40259:intron | 35.0% |
| ! | ATTTTCGACAATGACATCAG+TGG | - | chr3.3:91162635-91162654 | MS.gene40259:intron | 35.0% |
| ! | GGAGAAACCAATTCATTTTG+AGG | + | chr3.3:91161362-91161381 | None:intergenic | 35.0% |
| ! | TGTGGATTAATATCAGCATG+TGG | + | chr3.3:91162015-91162034 | None:intergenic | 35.0% |
| !!! | CAATGCCATTTTTACTTTGG+TGG | - | chr3.3:91162058-91162077 | MS.gene40259:intron | 35.0% |
| !!! | CGTAACAGACCTATTTTTTC+TGG | - | chr3.3:91160855-91160874 | MS.gene40259:CDS | 35.0% |
| !!! | GTCTGAAATGAGTTTTTTGC+AGG | - | chr3.3:91161803-91161822 | MS.gene40259:intron | 35.0% |
| !!! | TGGGTGTTATTTCTGCATTT+TGG | - | chr3.3:91163191-91163210 | MS.gene40259:intron | 35.0% |
| ACACAGATTTCTTAGCACAG+GGG | - | chr3.3:91162727-91162746 | MS.gene40259:intron | 40.0% | |
| AGAAAATGACACCAAGGACA+AGG | - | chr3.3:91161631-91161650 | MS.gene40259:intron | 40.0% | |
| AGCAATGAGGGACTATCAAA+AGG | - | chr3.3:91161666-91161685 | MS.gene40259:intron | 40.0% | |
| ATATGATCACGACAACAACG+AGG | - | chr3.3:91163168-91163187 | MS.gene40259:intron | 40.0% | |
| ATTCCAACTCTGATGAGTCT+CGG | + | chr3.3:91161838-91161857 | None:intergenic | 40.0% | |
| CACACAGATTTCTTAGCACA+GGG | - | chr3.3:91162726-91162745 | MS.gene40259:intron | 40.0% | |
| CCTCACCATAGAACAGTTAA+AGG | - | chr3.3:91163006-91163025 | MS.gene40259:intron | 40.0% | |
| CCTTTAACTGTTCTATGGTG+AGG | + | chr3.3:91163009-91163028 | None:intergenic | 40.0% | |
| CTCACATTGTAGAGATCCAA+AGG | - | chr3.3:91163101-91163120 | MS.gene40259:CDS | 40.0% | |
| GAACATAGTCTCCAACTTTC+AGG | + | chr3.3:91162956-91162975 | None:intergenic | 40.0% | |
| GAAGTCAGAGTCAGATTTGT+TGG | - | chr3.3:91162843-91162862 | MS.gene40259:intron | 40.0% | |
| GCCCAAACATTGAAATACAC+AGG | + | chr3.3:91161475-91161494 | None:intergenic | 40.0% | |
| GGATATCATGCATTCTCCTT+TGG | + | chr3.3:91163120-91163139 | None:intergenic | 40.0% | |
| GTTCATAGCTTTCCCCTTAT+AGG | - | chr3.3:91162775-91162794 | MS.gene40259:CDS | 40.0% | |
| TTAAACCAGCACTTCTAGTG+AGG | - | chr3.3:91161776-91161795 | MS.gene40259:intron | 40.0% | |
| TTCTGGATTCACCAATTCTG+AGG | - | chr3.3:91160872-91160891 | MS.gene40259:intron | 40.0% | |
| ! | ATAGTCTCCAACTTTCAGGT+TGG | + | chr3.3:91162952-91162971 | None:intergenic | 40.0% |
| ! | ATTGGTTTCTCCTCAATGCA+AGG | - | chr3.3:91161370-91161389 | MS.gene40259:intron | 40.0% |
| ! | CATATCTGAAGTGACCCTAA+AGG | + | chr3.3:91161497-91161516 | None:intergenic | 40.0% |
| ! | TGTGGTGTGTTTCAAGTGAA+AGG | - | chr3.3:91162465-91162484 | MS.gene40259:intron | 40.0% |
| !! | AGAGTCAGATTTGTTGGGTT+TGG | - | chr3.3:91162849-91162868 | MS.gene40259:intron | 40.0% |
| AAATGTGACACCTGCAACCT+CGG | + | chr3.3:91163141-91163160 | None:intergenic | 45.0% | |
| AAGTGACTGGGAAGCAATGA+GGG | - | chr3.3:91161654-91161673 | MS.gene40259:intron | 45.0% | |
| AGACTATGTTCTGTGCTTCC+AGG | - | chr3.3:91162965-91162984 | MS.gene40259:CDS | 45.0% | |
| AGGAGAATGCATGATATCCG+AGG | - | chr3.3:91163121-91163140 | MS.gene40259:CDS | 45.0% | |
| CACTGATCTCACTGTATTCC+TGG | - | chr3.3:91162105-91162124 | MS.gene40259:intron | 45.0% | |
| CTCAGTTCCTTTCGAGAACA+CGG | - | chr3.3:91162920-91162939 | MS.gene40259:intron | 45.0% | |
| CTGCAGCAAACCTTTAGACT+TGG | + | chr3.3:91162683-91162702 | None:intergenic | 45.0% | |
| CTGGGAAACCTGTCATCAAA+TGG | - | chr3.3:91161169-91161188 | MS.gene40259:intron | 45.0% | |
| GAGTGTTCCAACCTGAAAGT+TGG | - | chr3.3:91162942-91162961 | MS.gene40259:intron | 45.0% | |
| GATCTTCGAAAGACCAAGCA+TGG | - | chr3.3:91161867-91161886 | MS.gene40259:intron | 45.0% | |
| GCACACAGATTTCTTAGCAC+AGG | - | chr3.3:91162725-91162744 | MS.gene40259:intron | 45.0% | |
| GTTTCTCCTCAATGCAAGGA+AGG | - | chr3.3:91161374-91161393 | MS.gene40259:intron | 45.0% | |
| TCTAGGAAAGAGTTCGCTTG+AGG | - | chr3.3:91163272-91163291 | MS.gene40259:CDS | 45.0% | |
| TCTGTGCTTCCAGGTGATTT+AGG | - | chr3.3:91162974-91162993 | MS.gene40259:CDS | 45.0% | |
| TTCCAACTCTGATGAGTCTC+GGG | + | chr3.3:91161837-91161856 | None:intergenic | 45.0% | |
| TTGCCTAGTCGTAGACATAC+AGG | - | chr3.3:91162606-91162625 | MS.gene40259:intron | 45.0% | |
| ! | ACCTGAGTCCATTTGATGAC+AGG | + | chr3.3:91161180-91161199 | None:intergenic | 45.0% |
| ! | ACCTGTCATCAAATGGACTC+AGG | - | chr3.3:91161176-91161195 | MS.gene40259:CDS | 45.0% |
| ! | ATTTGTTGGGTTTGGAGCTG+AGG | - | chr3.3:91162857-91162876 | MS.gene40259:intron | 45.0% |
| ! | TGTCAAATCGAAAGCATGCC+AGG | + | chr3.3:91162126-91162145 | None:intergenic | 45.0% |
| !! | CAAGTCTAAAGGTTTGCTGC+AGG | - | chr3.3:91162681-91162700 | MS.gene40259:intron | 45.0% |
| !! | GAAGTGCTGGTTTAAGCAGT+TGG | + | chr3.3:91161771-91161790 | None:intergenic | 45.0% |
| !! | GAGGTACTTTTGGTGAGTCT+TGG | + | chr3.3:91161343-91161362 | None:intergenic | 45.0% |
| !! | GTAGGAAGGTACCTCAGAAT+TGG | + | chr3.3:91160886-91160905 | None:intergenic | 45.0% |
| ACCAAGGACAAGGAAGTGAC+TGG | - | chr3.3:91161641-91161660 | MS.gene40259:intron | 50.0% | |
| AGCTTATCATCTGGTCGTGC+TGG | - | chr3.3:91161150-91161169 | MS.gene40259:intron | 50.0% | |
| CCAAGGACAAGGAAGTGACT+GGG | - | chr3.3:91161642-91161661 | MS.gene40259:intron | 50.0% | |
| CTCTGACCTTCCTTGCATTG+AGG | + | chr3.3:91161383-91161402 | None:intergenic | 50.0% | |
| GAACACTCCGTGTTCTCGAA+AGG | + | chr3.3:91162930-91162949 | None:intergenic | 50.0% | |
| GAAGTGACTGGGAAGCAATG+AGG | - | chr3.3:91161653-91161672 | MS.gene40259:intron | 50.0% | |
| GATCACGACAACAACGAGGT+GGG | - | chr3.3:91163172-91163191 | MS.gene40259:intron | 50.0% | |
| GCATATGTGCTCACCATGCT+TGG | + | chr3.3:91161883-91161902 | None:intergenic | 50.0% | |
| GCTTATCATCTGGTCGTGCT+GGG | - | chr3.3:91161151-91161170 | MS.gene40259:intron | 50.0% | |
| GTGCCTGTATGTCTACGACT+AGG | + | chr3.3:91162612-91162631 | None:intergenic | 50.0% | |
| TGATCACGACAACAACGAGG+TGG | - | chr3.3:91163171-91163190 | MS.gene40259:intron | 50.0% | |
| TGCATGATATCCGAGGTTGC+AGG | - | chr3.3:91163128-91163147 | MS.gene40259:CDS | 50.0% | |
| TGGAGCTGAGGAAGATGAGT+GGG | - | chr3.3:91162869-91162888 | MS.gene40259:intron | 50.0% | |
| TTGGAGCTGAGGAAGATGAG+TGG | - | chr3.3:91162868-91162887 | MS.gene40259:intron | 50.0% | |
| ! | CTCAACCTCACTAGAAGTGC+TGG | + | chr3.3:91161784-91161803 | None:intergenic | 50.0% |
| CACCCGAGACTCATCAGAGT+TGG | - | chr3.3:91161832-91161851 | MS.gene40259:intron | 55.0% | |
| CCCAGTCACTTCCTTGTCCT+TGG | + | chr3.3:91161645-91161664 | None:intergenic | 55.0% | |
| CGAAAGGAACTGAGCGTTCC+CGG | + | chr3.3:91162914-91162933 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 91160837 | 91163321 | 91160837 | ID=MS.gene40259 |
| chr3.3 | mRNA | 91160837 | 91163321 | 91160837 | ID=MS.gene40259.t1;Parent=MS.gene40259 |
| chr3.3 | exon | 91163265 | 91163321 | 91163265 | ID=MS.gene40259.t1.exon1;Parent=MS.gene40259.t1 |
| chr3.3 | CDS | 91163265 | 91163321 | 91163265 | ID=cds.MS.gene40259.t1;Parent=MS.gene40259.t1 |
| chr3.3 | exon | 91163091 | 91163179 | 91163091 | ID=MS.gene40259.t1.exon2;Parent=MS.gene40259.t1 |
| chr3.3 | CDS | 91163091 | 91163179 | 91163091 | ID=cds.MS.gene40259.t1;Parent=MS.gene40259.t1 |
| chr3.3 | exon | 91162961 | 91163006 | 91162961 | ID=MS.gene40259.t1.exon3;Parent=MS.gene40259.t1 |
| chr3.3 | CDS | 91162961 | 91163006 | 91162961 | ID=cds.MS.gene40259.t1;Parent=MS.gene40259.t1 |
| chr3.3 | exon | 91162763 | 91162844 | 91162763 | ID=MS.gene40259.t1.exon4;Parent=MS.gene40259.t1 |
| chr3.3 | CDS | 91162763 | 91162844 | 91162763 | ID=cds.MS.gene40259.t1;Parent=MS.gene40259.t1 |
| chr3.3 | exon | 91162270 | 91162333 | 91162270 | ID=MS.gene40259.t1.exon5;Parent=MS.gene40259.t1 |
| chr3.3 | CDS | 91162270 | 91162333 | 91162270 | ID=cds.MS.gene40259.t1;Parent=MS.gene40259.t1 |
| chr3.3 | exon | 91161404 | 91161455 | 91161404 | ID=MS.gene40259.t1.exon6;Parent=MS.gene40259.t1 |
| chr3.3 | CDS | 91161404 | 91161455 | 91161404 | ID=cds.MS.gene40259.t1;Parent=MS.gene40259.t1 |
| chr3.3 | exon | 91161172 | 91161315 | 91161172 | ID=MS.gene40259.t1.exon7;Parent=MS.gene40259.t1 |
| chr3.3 | CDS | 91161172 | 91161315 | 91161172 | ID=cds.MS.gene40259.t1;Parent=MS.gene40259.t1 |
| chr3.3 | exon | 91160969 | 91161088 | 91160969 | ID=MS.gene40259.t1.exon8;Parent=MS.gene40259.t1 |
| chr3.3 | CDS | 91160969 | 91161088 | 91160969 | ID=cds.MS.gene40259.t1;Parent=MS.gene40259.t1 |
| chr3.3 | exon | 91160837 | 91160881 | 91160837 | ID=MS.gene40259.t1.exon9;Parent=MS.gene40259.t1 |
| chr3.3 | CDS | 91160837 | 91160881 | 91160837 | ID=cds.MS.gene40259.t1;Parent=MS.gene40259.t1 |
| Gene Sequence |
| Protein sequence |
