Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41171.t1 | XP_013456128.1 | 100 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 7.00E-45 | 189.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41171.t1 | Q9XGX7 | 80.6 | 93 | 18 | 0 | 1 | 93 | 1 | 93 | 5.4e-38 | 157.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41171.t1 | I3SBU8 | 100.0 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 5.0e-45 | 189.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene41171 | 0.843622 | 1.25E-58 | -1.69E-46 |
| MS.gene050290 | MS.gene41171 | 0.809707 | 1.66E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene41171 | 0.818589 | 1.81E-52 | -1.69E-46 |
| MS.gene050916 | MS.gene41171 | 0.826956 | 2.04E-54 | -1.69E-46 |
| MS.gene051063 | MS.gene41171 | 0.813835 | 2.09E-51 | -1.69E-46 |
| MS.gene051330 | MS.gene41171 | 0.853089 | 3.01E-61 | -1.69E-46 |
| MS.gene051451 | MS.gene41171 | 0.805602 | 1.23E-49 | -1.69E-46 |
| MS.gene051633 | MS.gene41171 | 0.801644 | 8.17E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene41171 | 0.849561 | 2.99E-60 | -1.69E-46 |
| MS.gene051748 | MS.gene41171 | 0.839185 | 1.84E-57 | -1.69E-46 |
| MS.gene051756 | MS.gene41171 | 0.811316 | 7.44E-51 | -1.69E-46 |
| MS.gene051850 | MS.gene41171 | 0.805613 | 1.23E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene41171 | 0.823549 | 1.30E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene41171 | 0.869316 | 3.39E-66 | -1.69E-46 |
| MS.gene052947 | MS.gene41171 | 0.862773 | 4.00E-64 | -1.69E-46 |
| MS.gene053109 | MS.gene41171 | 0.815534 | 8.80E-52 | -1.69E-46 |
| MS.gene053952 | MS.gene41171 | 0.854123 | 1.52E-61 | -1.69E-46 |
| MS.gene054937 | MS.gene41171 | 0.815599 | 8.51E-52 | -1.69E-46 |
| MS.gene055808 | MS.gene41171 | 0.807835 | 4.16E-50 | -1.69E-46 |
| MS.gene056075 | MS.gene41171 | 0.812978 | 3.23E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene41171 | 0.870657 | 1.24E-66 | -1.69E-46 |
| MS.gene056986 | MS.gene41171 | 0.800789 | 1.22E-48 | -1.69E-46 |
| MS.gene057094 | MS.gene41171 | 0.877996 | 4.01E-69 | -1.69E-46 |
| MS.gene057140 | MS.gene41171 | 0.807697 | 4.45E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene41171 | 0.81448 | 1.51E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene41171 | 0.836712 | 7.97E-57 | -1.69E-46 |
| MS.gene058906 | MS.gene41171 | 0.837649 | 4.59E-57 | -1.69E-46 |
| MS.gene059898 | MS.gene41171 | 0.804098 | 2.54E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene41171 | 0.892253 | 1.88E-74 | -1.69E-46 |
| MS.gene06011 | MS.gene41171 | 0.84323 | 1.59E-58 | -1.69E-46 |
| MS.gene060429 | MS.gene41171 | 0.822987 | 1.76E-53 | -1.69E-46 |
| MS.gene060586 | MS.gene41171 | 0.806254 | 8.99E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene41171 | 0.800736 | 1.25E-48 | -1.69E-46 |
| MS.gene060830 | MS.gene41171 | 0.817834 | 2.68E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene052067 | MS.gene41171 | PPI |
| MS.gene001663 | MS.gene41171 | PPI |
| MS.gene31107 | MS.gene41171 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41171.t1 | MTR_4g063925 | 100.000 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 2.50e-66 | 194 |
| MS.gene41171.t1 | MTR_4g021715 | 46.237 | 93 | 33 | 1 | 1 | 93 | 1 | 76 | 9.56e-25 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41171.t1 | AT3G46560 | 78.495 | 93 | 20 | 0 | 1 | 93 | 1 | 93 | 4.39e-51 | 155 |
Find 19 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGCATGATTGCTGATA+TGG | 0.238381 | 4.1:-36530947 | MS.gene41171:CDS |
| AACCTCACCTGTCACGGATT+TGG | 0.342119 | 4.1:+36530872 | None:intergenic |
| CCAGGTTATTATACATTCTC+AGG | 0.398941 | 4.1:+36527472 | None:intergenic |
| AATCTTGAGTTGCAGCTCCT+TGG | 0.400935 | 4.1:+36527310 | None:intergenic |
| ATTCTTTGTTTATCTGCCTC+TGG | 0.426356 | 4.1:+36530916 | None:intergenic |
| AGAGGCAGATAAACAAAGAA+TGG | 0.502607 | 4.1:-36530914 | MS.gene41171:CDS |
| ATCAGCTCCAAATCCGTGAC+AGG | 0.514968 | 4.1:-36530879 | MS.gene41171:intron |
| CTCTGCACATCTTCGAACAC+AGG | 0.526331 | 4.1:+36527383 | None:intergenic |
| TTTGGGAACCTCACCTGTCA+CGG | 0.540460 | 4.1:+36530866 | None:intergenic |
| CTGAAGCACTCTATGCGTGT+TGG | 0.545186 | 4.1:-36527354 | MS.gene41171:CDS |
| GATTTGGAGCTGATCGATCA+TGG | 0.557131 | 4.1:+36530888 | None:intergenic |
| CCTGAGAATGTATAATAACC+TGG | 0.571370 | 4.1:-36527472 | MS.gene41171:CDS |
| CATGAAAGCATCTCTCCACC+AGG | 0.576768 | 4.1:+36527454 | None:intergenic |
| ACTCTATGCGTGTTGGCATG+AGG | 0.597417 | 4.1:-36527347 | MS.gene41171:CDS |
| TAAATCCCTGCAAAAGCAAG+AGG | 0.610554 | 4.1:-36527409 | MS.gene41171:CDS |
| AGGTTTGCTGAGCTCAACCA+AGG | 0.659807 | 4.1:-36527327 | MS.gene41171:CDS |
| GAGATGCTTTCATGATTGTG+TGG | 0.661772 | 4.1:-36527445 | MS.gene41171:CDS |
| GAGAATGTATAATAACCTGG+TGG | 0.692374 | 4.1:-36527469 | MS.gene41171:CDS |
| TGATATGGAAAATCTTCCAG+AGG | 0.718208 | 4.1:-36530932 | MS.gene41171:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTATTAGAACTTATAA+CGG | + | chr4.1:36530584-36530603 | None:intergenic | 10.0% |
| !!! | AAAAAAAACCTAAATTTTTT+TGG | + | chr4.1:36527535-36527554 | None:intergenic | 10.0% |
| !! | AATAAATTAAGATTTAAACG+TGG | - | chr4.1:36528602-36528621 | MS.gene41171:intron | 15.0% |
| !! | AATAATTTGAGCTTATTTAT+TGG | + | chr4.1:36530408-36530427 | None:intergenic | 15.0% |
| !! | ACATTAAATAGATCATTAAA+CGG | + | chr4.1:36529170-36529189 | None:intergenic | 15.0% |
| !! | ATATAATGTTCTATTTAATG+TGG | - | chr4.1:36527987-36528006 | MS.gene41171:intron | 15.0% |
| !! | CTTAATTTATTAGACTTTAT+TGG | + | chr4.1:36528593-36528612 | None:intergenic | 15.0% |
| !! | TTTGTTTACCAAAAAAATTT+AGG | - | chr4.1:36527524-36527543 | MS.gene41171:intron | 15.0% |
| !!! | ATAATGTGTTGAATTTATTT+TGG | - | chr4.1:36527574-36527593 | MS.gene41171:intron | 15.0% |
| !!! | ATTTAGGTTTTTTTTTTTGT+TGG | - | chr4.1:36527540-36527559 | MS.gene41171:intron | 15.0% |
| !!! | TGAATCTTTTTTAAAATTTG+AGG | - | chr4.1:36529633-36529652 | MS.gene41171:intron | 15.0% |
| !!! | TTGAATTTATTTTGGAATTT+GGG | - | chr4.1:36527582-36527601 | MS.gene41171:intron | 15.0% |
| !! | GTTTAATGATCTATTTAATG+TGG | - | chr4.1:36529169-36529188 | MS.gene41171:intron | 20.0% |
| !! | TTATTGCTTCATTACATTAT+GGG | - | chr4.1:36530666-36530685 | MS.gene41171:intron | 20.0% |
| !! | TTGGTTTCATAAAATATTAG+TGG | - | chr4.1:36528485-36528504 | MS.gene41171:intron | 20.0% |
| !!! | CATTTTTGTTTTTGGATAAT+AGG | - | chr4.1:36529002-36529021 | MS.gene41171:intron | 20.0% |
| !!! | CTTTTTTTTCTTTCTTTTGT+TGG | - | chr4.1:36529590-36529609 | MS.gene41171:intron | 20.0% |
| !!! | GCTTTATTATTTACTCATTT+TGG | - | chr4.1:36529456-36529475 | MS.gene41171:intron | 20.0% |
| !!! | GTTGAATTTATTTTGGAATT+TGG | - | chr4.1:36527581-36527600 | MS.gene41171:intron | 20.0% |
| !!! | TATTTTACATGACTTTGTTA+GGG | - | chr4.1:36530636-36530655 | MS.gene41171:intron | 20.0% |
| !!! | TGAATCTGTTTTTATATTGA+GGG | - | chr4.1:36528768-36528787 | MS.gene41171:intron | 20.0% |
| !!! | TGAATTTATTTTGGAATTTG+GGG | - | chr4.1:36527583-36527602 | MS.gene41171:intron | 20.0% |
| !!! | TTATTTTACATGACTTTGTT+AGG | - | chr4.1:36530635-36530654 | MS.gene41171:intron | 20.0% |
| !!! | TTGAATCTGTTTTTATATTG+AGG | - | chr4.1:36528767-36528786 | MS.gene41171:intron | 20.0% |
| ! | AAAAAACCCTAAACTTTACA+AGG | + | chr4.1:36527507-36527526 | None:intergenic | 25.0% |
| ! | AAAATATTAGTGGTGTGTTT+GGG | - | chr4.1:36528495-36528514 | MS.gene41171:intron | 25.0% |
| ! | AAATAAATGTACAAACTTCG+AGG | + | chr4.1:36529541-36529560 | None:intergenic | 25.0% |
| ! | ATAGACAACAAAAATCAATG+TGG | + | chr4.1:36527969-36527988 | None:intergenic | 25.0% |
| ! | CAAATTATCAACATGTCATA+AGG | - | chr4.1:36530340-36530359 | MS.gene41171:intron | 25.0% |
| ! | CTCAATATAGTACTTTACTT+GGG | + | chr4.1:36530445-36530464 | None:intergenic | 25.0% |
| ! | GTAAATAATAAAGCTCAATG+TGG | + | chr4.1:36529450-36529469 | None:intergenic | 25.0% |
| ! | GTTATTGCTTCATTACATTA+TGG | - | chr4.1:36530665-36530684 | MS.gene41171:intron | 25.0% |
| ! | TAAAATATTAGTGGTGTGTT+TGG | - | chr4.1:36528494-36528513 | MS.gene41171:intron | 25.0% |
| ! | TATACCTTAATACAGTCTAT+AGG | - | chr4.1:36529299-36529318 | MS.gene41171:intron | 25.0% |
| ! | TATTGCTTCATTACATTATG+GGG | - | chr4.1:36530667-36530686 | MS.gene41171:intron | 25.0% |
| ! | TCAATATAGTACTTTACTTG+GGG | + | chr4.1:36530444-36530463 | None:intergenic | 25.0% |
| ! | TCATGCTAATTTATAAGTTG+CGG | - | chr4.1:36528793-36528812 | MS.gene41171:intron | 25.0% |
| ! | TTCATTCATCTATCACTATT+TGG | - | chr4.1:36529273-36529292 | MS.gene41171:intron | 25.0% |
| !! | AAAAAACGAAGCAATGATTT+TGG | + | chr4.1:36527415-36527434 | None:intergenic | 25.0% |
| !! | AAAAACGAAGCAATGATTTT+GGG | + | chr4.1:36527414-36527433 | None:intergenic | 25.0% |
| !! | AATTTAATGAACTAGTCTCT+GGG | + | chr4.1:36529115-36529134 | None:intergenic | 25.0% |
| !! | AGAGACTAGTTCATTAAATT+GGG | - | chr4.1:36529115-36529134 | MS.gene41171:intron | 25.0% |
| !!! | TTCTAATGAACTAGTCTTTT+GGG | + | chr4.1:36528413-36528432 | None:intergenic | 25.0% |
| !!! | TTTTAAAATTTGAGGCTTCA+TGG | - | chr4.1:36529641-36529660 | MS.gene41171:intron | 25.0% |
| !!! | TTTTAAGGAGAACATCAATA+TGG | + | chr4.1:36529744-36529763 | None:intergenic | 25.0% |
| AAAGTGGTAATTAAACCATG+AGG | + | chr4.1:36529145-36529164 | None:intergenic | 30.0% | |
| AAATAAATGTACCTCCTTTG+AGG | + | chr4.1:36527476-36527495 | None:intergenic | 30.0% | |
| AACTAACCCAAAAATTTGCA+AGG | + | chr4.1:36528713-36528732 | None:intergenic | 30.0% | |
| AATAAATGTACCTCCTTTGA+GGG | + | chr4.1:36527475-36527494 | None:intergenic | 30.0% | |
| AGAAACATTCAAAAGTCACA+CGG | + | chr4.1:36529768-36529787 | None:intergenic | 30.0% | |
| AGATCATTAAACGGATAAAG+TGG | + | chr4.1:36529161-36529180 | None:intergenic | 30.0% | |
| AGTTATGACTTAAGCCAATA+TGG | - | chr4.1:36529369-36529388 | MS.gene41171:intron | 30.0% | |
| ATAAGAGCCAATGTCTATAA+CGG | - | chr4.1:36528032-36528051 | MS.gene41171:intron | 30.0% | |
| ATTTGCACCTTGTAAAGTTT+AGG | - | chr4.1:36527497-36527516 | MS.gene41171:intron | 30.0% | |
| CATGCTAATTTATAAGTTGC+GGG | - | chr4.1:36528794-36528813 | MS.gene41171:intron | 30.0% | |
| CATTAGATGAAGGCTTAATT+AGG | - | chr4.1:36529880-36529899 | MS.gene41171:intron | 30.0% | |
| CTTTCTTATCTACTCAATGT+GGG | - | chr4.1:36530465-36530484 | MS.gene41171:intron | 30.0% | |
| GCTCAATATAGTACTTTACT+TGG | + | chr4.1:36530446-36530465 | None:intergenic | 30.0% | |
| TCTACCTATAGACTGTATTA+AGG | + | chr4.1:36529306-36529325 | None:intergenic | 30.0% | |
| TGAAGTTATCATTGTGAGTT+AGG | + | chr4.1:36528142-36528161 | None:intergenic | 30.0% | |
| TGAAGTTGTTTATCCAAACA+AGG | + | chr4.1:36530181-36530200 | None:intergenic | 30.0% | |
| TTATTTCCATAAGTTGTCCA+GGG | + | chr4.1:36530303-36530322 | None:intergenic | 30.0% | |
| TTTGCACCTTGTAAAGTTTA+GGG | - | chr4.1:36527498-36527517 | MS.gene41171:intron | 30.0% | |
| ! | ATAGTGTTTTCATTGAGAGT+TGG | + | chr4.1:36529341-36529360 | None:intergenic | 30.0% |
| ! | CAAAAGACTAGTTCATTAGA+AGG | - | chr4.1:36528412-36528431 | MS.gene41171:intron | 30.0% |
| ! | CAATTTAATGAACTAGTCTC+TGG | + | chr4.1:36529116-36529135 | None:intergenic | 30.0% |
| ! | CAGAGACTAGTTCATTAAAT+TGG | - | chr4.1:36529114-36529133 | MS.gene41171:intron | 30.0% |
| ! | CATAGACTAGTTAGTTAGAT+GGG | - | chr4.1:36527930-36527949 | MS.gene41171:intron | 30.0% |
| ! | CATCTAACTAACTAGTCTAT+GGG | + | chr4.1:36527931-36527950 | None:intergenic | 30.0% |
| ! | TGACTTTTGAATGTTTCTTC+TGG | - | chr4.1:36529770-36529789 | MS.gene41171:intron | 30.0% |
| ! | TTTCCACCTTGCAAATTTTT+GGG | - | chr4.1:36528704-36528723 | MS.gene41171:intron | 30.0% |
| ! | TTTTCCACCTTGCAAATTTT+TGG | - | chr4.1:36528703-36528722 | MS.gene41171:intron | 30.0% |
| ! | TTTTGATGTCCTCCTTAAAA+TGG | - | chr4.1:36529686-36529705 | MS.gene41171:intron | 30.0% |
| !! | GTCTCTGTCTAAGATTTTTA+TGG | - | chr4.1:36529062-36529081 | MS.gene41171:intron | 30.0% |
| !! | TCTGTCTAAGATTTTTATGG+TGG | - | chr4.1:36529065-36529084 | MS.gene41171:intron | 30.0% |
| !! | TTGGTTTGTATTAGCATTAC+AGG | - | chr4.1:36529609-36529628 | MS.gene41171:intron | 30.0% |
| !! | TTTTAAGGAGAACATCACTA+TGG | + | chr4.1:36527678-36527697 | None:intergenic | 30.0% |
| !! | TTTTAAGGAGAACGTAACTA+TGG | + | chr4.1:36528863-36528882 | None:intergenic | 30.0% |
| !!! | CTTCTAATGAACTAGTCTTT+TGG | + | chr4.1:36528414-36528433 | None:intergenic | 30.0% |
| !!! | GTAGCTGTCATTTTTGTTTT+TGG | - | chr4.1:36528994-36529013 | MS.gene41171:intron | 30.0% |
| !!! | GTTAGTTTTTGTTCTTCTGT+TGG | - | chr4.1:36528726-36528745 | MS.gene41171:intron | 30.0% |
| !!! | TGTCATGTTTTTTGGAGAAT+AGG | - | chr4.1:36527815-36527834 | MS.gene41171:intron | 30.0% |
| AAATCTTAGACAGAGACCAA+AGG | + | chr4.1:36529059-36529078 | None:intergenic | 35.0% | |
| AACTTCAATTGTTACGACGT+AGG | - | chr4.1:36528155-36528174 | MS.gene41171:intron | 35.0% | |
| ACCTAATGAACAAGTCTCTA+GGG | + | chr4.1:36529404-36529423 | None:intergenic | 35.0% | |
| ACTTCAATTGTTACGACGTA+GGG | - | chr4.1:36528156-36528175 | MS.gene41171:intron | 35.0% | |
| AGAGGCAGATAAACAAAGAA+TGG | - | chr4.1:36527346-36527365 | MS.gene41171:CDS | 35.0% | |
| AGATGAATGAAGCCATGAAA+GGG | + | chr4.1:36529264-36529283 | None:intergenic | 35.0% | |
| AGTAACCCCTAAAATTTGCA+CGG | + | chr4.1:36529572-36529591 | None:intergenic | 35.0% | |
| AGTTGACATATTACCAGACA+GGG | - | chr4.1:36530734-36530753 | MS.gene41171:intron | 35.0% | |
| ATAAATGTACCTCCTTTGAG+GGG | + | chr4.1:36527474-36527493 | None:intergenic | 35.0% | |
| CCAGGTTATTATACATTCTC+AGG | + | chr4.1:36530791-36530810 | None:intergenic | 35.0% | |
| CCTGAGAATGTATAATAACC+TGG | - | chr4.1:36530788-36530807 | MS.gene41171:intron | 35.0% | |
| CTACAGAAAGGAATAGAATG+AGG | + | chr4.1:36530056-36530075 | None:intergenic | 35.0% | |
| CTCACTAGTTCATTAGATGA+AGG | - | chr4.1:36529870-36529889 | MS.gene41171:intron | 35.0% | |
| CTCATGATAGATTAGTGGTA+TGG | - | chr4.1:36530489-36530508 | MS.gene41171:intron | 35.0% | |
| CTTATTTCCATAAGTTGTCC+AGG | + | chr4.1:36530304-36530323 | None:intergenic | 35.0% | |
| CTTCATGGTATGTAAGTTGT+TGG | - | chr4.1:36529656-36529675 | MS.gene41171:intron | 35.0% | |
| GAAACATTCAAAAGTCACAC+GGG | + | chr4.1:36529767-36529786 | None:intergenic | 35.0% | |
| GAGAATGTATAATAACCTGG+TGG | - | chr4.1:36530791-36530810 | MS.gene41171:intron | 35.0% | |
| GCTTTCTTATCTACTCAATG+TGG | - | chr4.1:36530464-36530483 | MS.gene41171:intron | 35.0% | |
| GTAACAGTCTAGTGTTTGTT+TGG | + | chr4.1:36528571-36528590 | None:intergenic | 35.0% | |
| GTAGACAAGAAAACTCAATG+TGG | + | chr4.1:36528459-36528478 | None:intergenic | 35.0% | |
| TAACCCAAAAATTTGCAAGG+TGG | + | chr4.1:36528710-36528729 | None:intergenic | 35.0% | |
| TAGATGAATGAAGCCATGAA+AGG | + | chr4.1:36529265-36529284 | None:intergenic | 35.0% | |
| TAGTTGACATATTACCAGAC+AGG | - | chr4.1:36530733-36530752 | MS.gene41171:intron | 35.0% | |
| TCGGCTCTTAAAGTCTTAAA+GGG | + | chr4.1:36529945-36529964 | None:intergenic | 35.0% | |
| TGATATGGAAAATCTTCCAG+AGG | - | chr4.1:36527328-36527347 | MS.gene41171:CDS | 35.0% | |
| TTAAGAGCCGACATATACTA+CGG | - | chr4.1:36529954-36529973 | MS.gene41171:intron | 35.0% | |
| TTGTATTAGACTCTCCTTGT+GGG | + | chr4.1:36530118-36530137 | None:intergenic | 35.0% | |
| TTGTGCTTTCATTGAGAGTT+AGG | + | chr4.1:36530079-36530098 | None:intergenic | 35.0% | |
| TTTGTATTAGACTCTCCTTG+TGG | + | chr4.1:36530119-36530138 | None:intergenic | 35.0% | |
| ! | AAAACTCAATGTGGTAGTGA+AGG | + | chr4.1:36528450-36528469 | None:intergenic | 35.0% |
| ! | AATGTTTCTTCTGGACGTTT+TGG | - | chr4.1:36529779-36529798 | MS.gene41171:intron | 35.0% |
| ! | ATGCTGTCTTTTAGTACCTT+TGG | - | chr4.1:36527853-36527872 | MS.gene41171:intron | 35.0% |
| ! | ATGTTTCTTCTGGACGTTTT+GGG | - | chr4.1:36529780-36529799 | MS.gene41171:intron | 35.0% |
| ! | ATTCTTTGTTTATCTGCCTC+TGG | + | chr4.1:36527347-36527366 | None:intergenic | 35.0% |
| ! | CAAAAGCATGATTGCTGATA+TGG | - | chr4.1:36527313-36527332 | MS.gene41171:CDS | 35.0% |
| ! | CAAAATCTGCCACCATTTTA+AGG | + | chr4.1:36529701-36529720 | None:intergenic | 35.0% |
| ! | CCATAGACTAGTTAGTTAGA+TGG | - | chr4.1:36527929-36527948 | MS.gene41171:intron | 35.0% |
| ! | CCATCTAACTAACTAGTCTA+TGG | + | chr4.1:36527932-36527951 | None:intergenic | 35.0% |
| ! | GGAACTACATTTTCAACAAG+TGG | - | chr4.1:36527735-36527754 | MS.gene41171:intron | 35.0% |
| ! | GTGACTTTCAATGTTGCTTA+TGG | - | chr4.1:36528888-36528907 | MS.gene41171:intron | 35.0% |
| ! | GTTTGGGTTTCAGTTCAAAA+AGG | - | chr4.1:36528511-36528530 | MS.gene41171:intron | 35.0% |
| ! | TGACTATTGAATGTTGCTTC+TGG | - | chr4.1:36527704-36527723 | MS.gene41171:intron | 35.0% |
| ! | TGCTGTCTTTTAGTACCTTT+GGG | - | chr4.1:36527854-36527873 | MS.gene41171:intron | 35.0% |
| ! | TTATCCTTAGTTCTCCCAAA+CGG | - | chr4.1:36530365-36530384 | MS.gene41171:intron | 35.0% |
| ! | TTATGGGGCTCTTGTATTTT+TGG | - | chr4.1:36530682-36530701 | MS.gene41171:intron | 35.0% |
| ! | TTTCCACCGTGCAAATTTTA+GGG | - | chr4.1:36529563-36529582 | MS.gene41171:intron | 35.0% |
| ! | TTTTCCACCGTGCAAATTTT+AGG | - | chr4.1:36529562-36529581 | MS.gene41171:intron | 35.0% |
| ! | TTTTCTTGTCTACTCGATGT+TGG | - | chr4.1:36528466-36528485 | MS.gene41171:intron | 35.0% |
| !! | AATGTTGCTTATGGACGTTT+TGG | - | chr4.1:36528897-36528916 | MS.gene41171:intron | 35.0% |
| !! | ATAGACATTGGCTCTTATAG+AGG | + | chr4.1:36528030-36528049 | None:intergenic | 35.0% |
| !! | ATGTTGCTTATGGACGTTTT+GGG | - | chr4.1:36528898-36528917 | MS.gene41171:intron | 35.0% |
| !!! | ATTCATCGATTGGTTTTCAG+TGG | - | chr4.1:36528078-36528097 | MS.gene41171:intron | 35.0% |
| !!! | CAATAGTCACACTGGTTTTA+AGG | + | chr4.1:36527693-36527712 | None:intergenic | 35.0% |
| !!! | CTTAGTTGTGTGCTGTTTTT+CGG | - | chr4.1:36529031-36529050 | MS.gene41171:intron | 35.0% |
| !!! | CTTGTAGCTGTCATGTTTTT+TGG | - | chr4.1:36527807-36527826 | MS.gene41171:intron | 35.0% |
| !!! | TGAAAGTCACACTGGTTTTA+AGG | + | chr4.1:36528878-36528897 | None:intergenic | 35.0% |
| AAACACTTGTGAGACCGTTT+GGG | + | chr4.1:36530382-36530401 | None:intergenic | 40.0% | |
| AAACTTCGAGGCGTAAATCT+GGG | + | chr4.1:36529529-36529548 | None:intergenic | 40.0% | |
| AAAGGGGAAAGGGATAAAAG+TGG | + | chr4.1:36529247-36529266 | None:intergenic | 40.0% | |
| AAATGAGTGAACCTGCCAAA+GGG | + | chr4.1:36530007-36530026 | None:intergenic | 40.0% | |
| AAGGGATAAAAGTGGGTGAA+AGG | + | chr4.1:36529239-36529258 | None:intergenic | 40.0% | |
| AAGGGGAAAGGGATAAAAGT+GGG | + | chr4.1:36529246-36529265 | None:intergenic | 40.0% | |
| AATGTGGTACTTAAGTCGTG+AGG | + | chr4.1:36529434-36529453 | None:intergenic | 40.0% | |
| AGCAACATTGAAAGTCACAC+TGG | + | chr4.1:36528886-36528905 | None:intergenic | 40.0% | |
| ATTAAATTGGGAGAGCCTCA+TGG | - | chr4.1:36529127-36529146 | MS.gene41171:intron | 40.0% | |
| CAAAATCAGATAACCCTGTC+TGG | + | chr4.1:36530750-36530769 | None:intergenic | 40.0% | |
| CACCTAATGAACAAGTCTCT+AGG | + | chr4.1:36529405-36529424 | None:intergenic | 40.0% | |
| CATCAAGTCTAAGAACCTCA+TGG | - | chr4.1:36530148-36530167 | MS.gene41171:intron | 40.0% | |
| CATGACAGCTACAAGTGTTT+AGG | + | chr4.1:36527802-36527821 | None:intergenic | 40.0% | |
| CATGACTTTGTTAGGGTGAT+TGG | - | chr4.1:36530643-36530662 | MS.gene41171:intron | 40.0% | |
| CCAGAATGAAGAGTTACAGA+GGG | + | chr4.1:36530611-36530630 | None:intergenic | 40.0% | |
| GAGATGCTTTCATGATTGTG+TGG | - | chr4.1:36530815-36530834 | MS.gene41171:intron | 40.0% | |
| GATGAATGAAGCCATGAAAG+GGG | + | chr4.1:36529263-36529282 | None:intergenic | 40.0% | |
| GCAACATTCAATAGTCACAC+TGG | + | chr4.1:36527701-36527720 | None:intergenic | 40.0% | |
| GTGAAAGCCGTAGTATATGT+CGG | + | chr4.1:36529964-36529983 | None:intergenic | 40.0% | |
| TAAATCCCTGCAAAAGCAAG+AGG | - | chr4.1:36530851-36530870 | MS.gene41171:intron | 40.0% | |
| TACCTTTGGGCTCTGTTTAA+TGG | - | chr4.1:36527867-36527886 | MS.gene41171:intron | 40.0% | |
| TACTTTACTTGGGGTCTGTT+GGG | + | chr4.1:36530435-36530454 | None:intergenic | 40.0% | |
| TAGGGTTAGACTCTCCATAT+TGG | + | chr4.1:36529386-36529405 | None:intergenic | 40.0% | |
| TCGATGAATGAAACCACCAA+CGG | + | chr4.1:36528067-36528086 | None:intergenic | 40.0% | |
| TGATGTCCTCCTTAAAATGG+TGG | - | chr4.1:36529689-36529708 | MS.gene41171:intron | 40.0% | |
| TGGGTCTCATGATAGATTAG+TGG | - | chr4.1:36530484-36530503 | MS.gene41171:intron | 40.0% | |
| TGGTGGTTTCATTCATCGAT+TGG | - | chr4.1:36528068-36528087 | MS.gene41171:intron | 40.0% | |
| TGTAGCTTCATCCAACCTAT+AGG | - | chr4.1:36528101-36528120 | MS.gene41171:intron | 40.0% | |
| TGTGAGTTAGGATACAGAGA+GGG | + | chr4.1:36528130-36528149 | None:intergenic | 40.0% | |
| TTCCATTAAACAGAGCCCAA+AGG | + | chr4.1:36527872-36527891 | None:intergenic | 40.0% | |
| TTGAGAGTTAGGCTACAGAA+AGG | + | chr4.1:36530068-36530087 | None:intergenic | 40.0% | |
| TTGTGAGTTAGGATACAGAG+AGG | + | chr4.1:36528131-36528150 | None:intergenic | 40.0% | |
| TTTATCCCTTTCCCCTTTCA+TGG | - | chr4.1:36529249-36529268 | MS.gene41171:intron | 40.0% | |
| ! | AAACAAGGTCTAAAGCCATG+AGG | + | chr4.1:36530166-36530185 | None:intergenic | 40.0% |
| ! | AATGTGGTAGTGAAGGCATA+AGG | + | chr4.1:36528443-36528462 | None:intergenic | 40.0% |
| ! | ACCCTAGAGACTTGTTCATT+AGG | - | chr4.1:36529400-36529419 | MS.gene41171:intron | 40.0% |
| ! | CAAAAGTCACACGGGTTTTA+AGG | + | chr4.1:36529759-36529778 | None:intergenic | 40.0% |
| ! | CTAGAGACTTGTTCATTAGG+TGG | - | chr4.1:36529403-36529422 | MS.gene41171:intron | 40.0% |
| ! | GTCGGCTCTTAAAGTCTTAA+AGG | + | chr4.1:36529946-36529965 | None:intergenic | 40.0% |
| ! | TAAATGTACCTCCTTTGAGG+GGG | + | chr4.1:36527473-36527492 | None:intergenic | 40.0% |
| ! | TATGTTTGGATGGAGGGTTT+TGG | - | chr4.1:36528179-36528198 | MS.gene41171:intron | 40.0% |
| ! | TTCCACCGTGCAAATTTTAG+GGG | - | chr4.1:36529564-36529583 | MS.gene41171:intron | 40.0% |
| !! | AATCTGCCACCATTTTAAGG+AGG | + | chr4.1:36529698-36529717 | None:intergenic | 40.0% |
| !! | AATGTTGCTTCTGGACGTTT+TGG | - | chr4.1:36527713-36527732 | MS.gene41171:intron | 40.0% |
| !! | ATAACGGACTAGAGTGTGTT+TGG | + | chr4.1:36530568-36530587 | None:intergenic | 40.0% |
| !! | ATGTTGCTTCTGGACGTTTT+GGG | - | chr4.1:36527714-36527733 | MS.gene41171:intron | 40.0% |
| !! | TCATGGCTTTAGACCTTGTT+TGG | - | chr4.1:36530165-36530184 | MS.gene41171:intron | 40.0% |
| !! | TTCTGGAGGAGGTTTTTGAA+GGG | + | chr4.1:36528365-36528384 | None:intergenic | 40.0% |
| !! | TTTCTGGAGGAGGTTTTTGA+AGG | + | chr4.1:36528366-36528385 | None:intergenic | 40.0% |
| AAAACACCCTTAAGCTCTCC+AGG | - | chr4.1:36528383-36528402 | MS.gene41171:intron | 45.0% | |
| AACCCCTAAAATTTGCACGG+TGG | + | chr4.1:36529569-36529588 | None:intergenic | 45.0% | |
| AACTTCGAGGCGTAAATCTG+GGG | + | chr4.1:36529528-36529547 | None:intergenic | 45.0% | |
| AAGGGAGCCGTTATAGACAT+TGG | + | chr4.1:36528042-36528061 | None:intergenic | 45.0% | |
| AAGTTGCCCTGGACAACTTA+TGG | - | chr4.1:36530294-36530313 | MS.gene41171:intron | 45.0% | |
| AATGAAACCACCAACGGGAA+AGG | + | chr4.1:36528061-36528080 | None:intergenic | 45.0% | |
| AATGAGTGAACCTGCCAAAG+GGG | + | chr4.1:36530006-36530025 | None:intergenic | 45.0% | |
| ATGAAACCACCAACGGGAAA+GGG | + | chr4.1:36528060-36528079 | None:intergenic | 45.0% | |
| ATGAAGCCATGAAAGGGGAA+AGG | + | chr4.1:36529258-36529277 | None:intergenic | 45.0% | |
| CAAACTTCGAGGCGTAAATC+TGG | + | chr4.1:36529530-36529549 | None:intergenic | 45.0% | |
| CAAATGAGTGAACCTGCCAA+AGG | + | chr4.1:36530008-36530027 | None:intergenic | 45.0% | |
| CCCTCTGTAACTCTTCATTC+TGG | - | chr4.1:36530608-36530627 | MS.gene41171:intron | 45.0% | |
| CGATGAATGAAACCACCAAC+GGG | + | chr4.1:36528066-36528085 | None:intergenic | 45.0% | |
| GAAACACTTGTGAGACCGTT+TGG | + | chr4.1:36530383-36530402 | None:intergenic | 45.0% | |
| GCCAGAATGAAGAGTTACAG+AGG | + | chr4.1:36530612-36530631 | None:intergenic | 45.0% | |
| GTACTTTACTTGGGGTCTGT+TGG | + | chr4.1:36530436-36530455 | None:intergenic | 45.0% | |
| GTAGGGTATGTTTGGATGGA+GGG | - | chr4.1:36528173-36528192 | MS.gene41171:intron | 45.0% | |
| GTTACGACGTAGGGTATGTT+TGG | - | chr4.1:36528165-36528184 | MS.gene41171:intron | 45.0% | |
| TGAAGCCATGAAAGGGGAAA+GGG | + | chr4.1:36529257-36529276 | None:intergenic | 45.0% | |
| TGTTATGACTTGAGCCCACA+AGG | - | chr4.1:36530101-36530120 | MS.gene41171:intron | 45.0% | |
| ! | AAATGTACCTCCTTTGAGGG+GGG | + | chr4.1:36527472-36527491 | None:intergenic | 45.0% |
| ! | AATCTTGAGTTGCAGCTCCT+TGG | + | chr4.1:36530953-36530972 | None:intergenic | 45.0% |
| ! | GATTTGGAGCTGATCGATCA+TGG | + | chr4.1:36527375-36527394 | None:intergenic | 45.0% |
| ! | TTTTCTGTTACCCCCCTCAA+AGG | - | chr4.1:36527459-36527478 | MS.gene41171:CDS | 45.0% |
| !! | AGGAGGTTTTTGAAGGGTTC+TGG | + | chr4.1:36528359-36528378 | None:intergenic | 45.0% |
| !! | AGGTTTCCTCTTGCTTTTGC+AGG | + | chr4.1:36530860-36530879 | None:intergenic | 45.0% |
| !! | GACATTGGCTCTTATAGAGG+TGG | + | chr4.1:36528027-36528046 | None:intergenic | 45.0% |
| !! | GCTATTTTCAGAAGTTGCCC+TGG | - | chr4.1:36530283-36530302 | MS.gene41171:intron | 45.0% |
| !! | GGTTTCCTCTTGCTTTTGCA+GGG | + | chr4.1:36530859-36530878 | None:intergenic | 45.0% |
| !!! | ACTAGTCTTTTGGGTTCTCC+TGG | + | chr4.1:36528404-36528423 | None:intergenic | 45.0% |
| !!! | AGCTTAAGGGTGTTTTCTGG+AGG | + | chr4.1:36528379-36528398 | None:intergenic | 45.0% |
| !!! | GAGAGCTTAAGGGTGTTTTC+TGG | + | chr4.1:36528382-36528401 | None:intergenic | 45.0% |
| !!! | GGTTTTTGAAGGGTTCTGGA+TGG | + | chr4.1:36528355-36528374 | None:intergenic | 45.0% |
| !!! | GTGCTGTTTTTCGGTACCTT+TGG | - | chr4.1:36529040-36529059 | MS.gene41171:intron | 45.0% |
| !!! | TTAAGGGTGTTTTCTGGAGG+AGG | + | chr4.1:36528376-36528395 | None:intergenic | 45.0% |
| !!! | TTTGGATGGAGGGTTTTGGA+GGG | - | chr4.1:36528183-36528202 | MS.gene41171:intron | 45.0% |
| AACCTCACCTGTCACGGATT+TGG | + | chr4.1:36527391-36527410 | None:intergenic | 50.0% | |
| ATACAGAGAGGGCTGCCTAT+AGG | + | chr4.1:36528119-36528138 | None:intergenic | 50.0% | |
| ATACTACGGCTTTCACCTGC+TGG | - | chr4.1:36529968-36529987 | MS.gene41171:intron | 50.0% | |
| ATCAGCTCCAAATCCGTGAC+AGG | - | chr4.1:36527381-36527400 | MS.gene41171:CDS | 50.0% | |
| CGACGTAGGGTATGTTTGGA+TGG | - | chr4.1:36528169-36528188 | MS.gene41171:intron | 50.0% | |
| CGTAGGGTATGTTTGGATGG+AGG | - | chr4.1:36528172-36528191 | MS.gene41171:intron | 50.0% | |
| CTCTGCACATCTTCGAACAC+AGG | + | chr4.1:36530880-36530899 | None:intergenic | 50.0% | |
| GAGACCGTTTGGGAGAACTA+AGG | + | chr4.1:36530372-36530391 | None:intergenic | 50.0% | |
| GGTGGTATTCCTTTCCCCTT+TGG | - | chr4.1:36529989-36530008 | MS.gene41171:intron | 50.0% | |
| GGTTCTCCTGGAGAGCTTAA+GGG | + | chr4.1:36528392-36528411 | None:intergenic | 50.0% | |
| GTATTCCTTTCCCCTTTGGC+AGG | - | chr4.1:36529993-36530012 | MS.gene41171:intron | 50.0% | |
| TTTGGGAACCTCACCTGTCA+CGG | + | chr4.1:36527397-36527416 | None:intergenic | 50.0% | |
| ! | ACTAGTCTATGGGCTCGACT+CGG | + | chr4.1:36527921-36527940 | None:intergenic | 50.0% |
| ! | ACTCTATGCGTGTTGGCATG+AGG | - | chr4.1:36530913-36530932 | MS.gene41171:CDS | 50.0% |
| ! | CTGAAGCACTCTATGCGTGT+TGG | - | chr4.1:36530906-36530925 | MS.gene41171:CDS | 50.0% |
| !! | AGGTTTGCTGAGCTCAACCA+AGG | - | chr4.1:36530933-36530952 | MS.gene41171:CDS | 50.0% |
| !! | CATGAAAGCATCTCTCCACC+AGG | + | chr4.1:36530809-36530828 | None:intergenic | 50.0% |
| !! | GTTTGGATGGAGGGTTTTGG+AGG | - | chr4.1:36528182-36528201 | MS.gene41171:intron | 50.0% |
| !! | TGAAGGGTTCTGGATGGCTA+AGG | + | chr4.1:36528349-36528368 | None:intergenic | 50.0% |
| !!! | TTGGATGGAGGGTTTTGGAG+GGG | - | chr4.1:36528184-36528203 | MS.gene41171:intron | 50.0% |
| AGAGAGGGCTGCCTATAGGT+TGG | + | chr4.1:36528115-36528134 | None:intergenic | 55.0% | |
| ATAACGGCTCCCTTTCCCGT+TGG | - | chr4.1:36528048-36528067 | MS.gene41171:intron | 55.0% | |
| CTCCAAATCCGTGACAGGTG+AGG | - | chr4.1:36527386-36527405 | MS.gene41171:CDS | 55.0% | |
| GGGAAAGGAATACCACCAGC+AGG | + | chr4.1:36529986-36530005 | None:intergenic | 55.0% | |
| GGGTTCTCCTGGAGAGCTTA+AGG | + | chr4.1:36528393-36528412 | None:intergenic | 55.0% | |
| GTGAACCTGCCAAAGGGGAA+AGG | + | chr4.1:36530001-36530020 | None:intergenic | 55.0% | |
| TCTGTTACCCCCCTCAAAGG+AGG | - | chr4.1:36527462-36527481 | MS.gene41171:CDS | 55.0% | |
| CTACGGCTTTCACCTGCTGG+TGG | - | chr4.1:36529971-36529990 | MS.gene41171:intron | 60.0% | |
| !!! | GATGGAGGGTTTTGGAGGGG+AGG | - | chr4.1:36528187-36528206 | MS.gene41171:intron | 60.0% |
| ACGGCTCCCTTTCCCGTTGG+TGG | - | chr4.1:36528051-36528070 | MS.gene41171:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 36527308 | 36530974 | 36527308 | ID=MS.gene41171 |
| chr4.1 | mRNA | 36527308 | 36530974 | 36527308 | ID=MS.gene41171.t1;Parent=MS.gene41171 |
| chr4.1 | exon | 36530880 | 36530974 | 36530880 | ID=MS.gene41171.t1.exon1;Parent=MS.gene41171.t1 |
| chr4.1 | CDS | 36530880 | 36530974 | 36530880 | ID=cds.MS.gene41171.t1;Parent=MS.gene41171.t1 |
| chr4.1 | exon | 36527308 | 36527494 | 36527308 | ID=MS.gene41171.t1.exon2;Parent=MS.gene41171.t1 |
| chr4.1 | CDS | 36527308 | 36527494 | 36527308 | ID=cds.MS.gene41171.t1;Parent=MS.gene41171.t1 |
| Gene Sequence |
| Protein sequence |
