AlfalfaGEDB | MS.gene42514

M. sativa cultivar XinJiangDaYe / MS.gene42514

KEGG: K23801
GO: -
PFAM: PF01399.30

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42514.t1	XP_013449617.1	99	195	2	0	1	195	220	414	1.80E-103	385.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42514.t1	Q8GWE6	77.4	195	44	0	1	195	219	413	1.4e-80	300.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42514.t1	A0A072UCR5	99.0	195	2	0	1	195	220	414	1.3e-103	385.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene42514	0.816615	5.05E-52	-1.69E-46
MS.gene04920	MS.gene42514	0.806354	8.57E-50	-1.69E-46
MS.gene049283	MS.gene42514	0.868502	6.23E-66	-1.69E-46
MS.gene049368	MS.gene42514	0.816096	6.59E-52	-1.69E-46
MS.gene049499	MS.gene42514	0.811602	6.45E-51	-1.69E-46
MS.gene04998	MS.gene42514	0.802355	5.84E-49	-1.69E-46
MS.gene049983	MS.gene42514	0.840377	9.02E-58	-1.69E-46
MS.gene050414	MS.gene42514	0.807759	4.32E-50	-1.69E-46
MS.gene050654	MS.gene42514	0.823807	1.14E-53	-1.69E-46
MS.gene050941	MS.gene42514	0.801454	8.94E-49	-1.69E-46

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42514.t1	MTR_7g091650	98.974	195	2	0	1	195	220	414	8.60e-141	399

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42514.t1	AT2G19560	77.436	195	44	0	1	195	120	314	7.38e-107	309
MS.gene42514.t1	AT2G19560	77.436	195	44	0	1	195	219	413	5.32e-106	310

Showing 1 to 2 of 2 entries

Previous1Next

Find 40 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGCATGAAGCCAATATA+AGG	0.349869	7.1:+15800723	MS.gene42514:CDS
AAGATTCTTGTGTATCAGTA+TGG	0.406611	7.1:-15802707	None:intergenic
AATTGACATGGATGTGGATG+AGG	0.555159	7.1:+15802551	MS.gene42514:CDS
ACATCTTCTTTACTAATCTC+TGG	0.429870	7.1:-15802346	None:intergenic
ACCAGAATTAAACCTTATAT+TGG	0.293079	7.1:-15800735	None:intergenic
AGACCCAAGCAGAGCTCACC+AGG	0.451286	7.1:+15802488	MS.gene42514:CDS
AGCTCACCAGGTGAAGTTGG+AGG	0.588477	7.1:+15802500	MS.gene42514:CDS
AGTGCAGACCGAAGAAGTTG+AGG	0.599498	7.1:-15802164	None:intergenic
ATACACAAGAATCTTGTGAA+AGG	0.613044	7.1:+15802715	MS.gene42514:CDS
ATATTGTACAAGCTCTAAAA+AGG	0.257192	7.1:+15802135	MS.gene42514:CDS

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGTTTGGCTATTCAAA+GGG	+	chr7.1:15801916-15801935	MS.gene42514:intron	30.0%
AAGATTCTTGTGTATCAGTA+TGG	-	chr7.1:15802710-15802729	None:intergenic	30.0%
AATTAAAAAAAAGGGAGGAC+CGG	-	chr7.1:15801892-15801911	None:intergenic	30.0%
ACAGTAAAGTTGTTGTCATT+AGG	+	chr7.1:15801800-15801819	MS.gene42514:intron	30.0%
ACATCTTCTTTACTAATCTC+TGG	-	chr7.1:15802349-15802368	None:intergenic	30.0%
ATACACAAGAATCTTGTGAA+AGG	+	chr7.1:15802715-15802734	MS.gene42514:CDS	30.0%
ATCAACAACCAAATGTAATC+AGG	-	chr7.1:15802031-15802050	None:intergenic	30.0%
ATCCTATGTCAAACAAAAAC+TGG	-	chr7.1:15801187-15801206	None:intergenic	30.0%
ATCTCATTGTTCATCTATGA+AGG	+	chr7.1:15801078-15801097	MS.gene42514:intron	30.0%
ATTGAAAGTAGGAAAGAATG+AGG	-	chr7.1:15802595-15802614	None:intergenic	30.0%

Showing 1 to 10 of 180 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	15800328	15802822	15800328	ID=MS.gene42514
chr7.1	mRNA	15800328	15802822	15800328	ID=MS.gene42514.t1;Parent=MS.gene42514
chr7.1	exon	15800328	15800375	15800328	ID=MS.gene42514.t1.exon1;Parent=MS.gene42514.t1
chr7.1	CDS	15800328	15800375	15800328	ID=cds.MS.gene42514.t1;Parent=MS.gene42514.t1
chr7.1	exon	15800683	15800744	15800683	ID=MS.gene42514.t1.exon2;Parent=MS.gene42514.t1
chr7.1	CDS	15800683	15800744	15800683	ID=cds.MS.gene42514.t1;Parent=MS.gene42514.t1
chr7.1	exon	15801204	15801291	15801204	ID=MS.gene42514.t1.exon3;Parent=MS.gene42514.t1
chr7.1	CDS	15801204	15801291	15801204	ID=cds.MS.gene42514.t1;Parent=MS.gene42514.t1
chr7.1	exon	15802128	15802204	15802128	ID=MS.gene42514.t1.exon4;Parent=MS.gene42514.t1
chr7.1	CDS	15802128	15802204	15802128	ID=cds.MS.gene42514.t1;Parent=MS.gene42514.t1
chr7.1	exon	15802292	15802366	15802292	ID=MS.gene42514.t1.exon5;Parent=MS.gene42514.t1
chr7.1	CDS	15802292	15802366	15802292	ID=cds.MS.gene42514.t1;Parent=MS.gene42514.t1
chr7.1	exon	15802467	15802572	15802467	ID=MS.gene42514.t1.exon6;Parent=MS.gene42514.t1
chr7.1	CDS	15802467	15802572	15802467	ID=cds.MS.gene42514.t1;Parent=MS.gene42514.t1
chr7.1	exon	15802691	15802822	15802691	ID=MS.gene42514.t1.exon7;Parent=MS.gene42514.t1
chr7.1	CDS	15802691	15802822	15802691	ID=cds.MS.gene42514.t1;Parent=MS.gene42514.t1

Gene Sequence

>MS.gene42514

ATGTACTATACTGGTCGTCTCGAAGTTTTCAATGAAAATTTTCCTTCTGTAAGTAATCTAAATTTATTTTAAAATAATTTATGACCTGATTGTGTTCTGAGTTCTGACACTTTCTGTATGCTTCCTGCTGGCTTCGTAGTTTTCTATGTATTTTTTCTTTTTTGAGAGGGGTTTTCTATAATGTTACCTTCTGGTTTAAATTATTTGCAGTTGATGCCACTTTCAAACGAAAACTGTATTCATATACAATTTCAATCTCAAATGAATTGAAATTTTGCTTTATTATTATGATTATTATTGATGCTGCTGTAGTCGTTATAAACCATTTATAGAGTTTACATTTGTGACTTGACAGGCTGACTATAAATTATCCTATGCCTTGAAGCATTGCAACCAACAGCATGAAGCCAATATAAGGTTTAATTCTGGTGTATCAACTGTGTGCATTGCATTTTCATGAAGTGAGCTTTCTTTTAGGTTGCATTAAATTTGCCTGCAAATTAAACGTGCATTTGTGGATGGGGCAAAACATAGCTTTAGAATGTGATTGCTTAGTGCATGTTCTTAGAAATTGTTTCTTAAATCAAACTTCTGCAGATATTGCTTAGTGAATATTCTCTTTGGTGCTAAGCAAAAATGGAAGTATTTATTAGTAGGAATGTTTTTTACTAGTGGGCACCAACCCCCATATAAACTGCAAAATCCAAATCTTCCTTCCCTAGTAAAGAGGACTGGGAACATGAATTGTTCATCTCATTGTTCATCTATGAAGGGTTCTACCAATTGTTTATCTCATCAGTAAAAGACAGAAAAGAAAGCCATATTTAACTCTGTCCTTCTGTATGACGATCTGTAACCAGTTTTTGTTTGACATAGGATGATTCTTAAGTATCTGATTCCAGTGAAGCTTTCAATAGGCATATTGCCCAATCACAGGCTCTTGGAGAAGTACAATCTACTTGAGGTATGTTGGGTGCTTATGGATGGTTTGTTATTTTCCACTCTCTCTATGGGGGGGTACTATAAAAGTTTATTGTCTTATATTTTTTTTAATTGTAAACCTTTTAGAGCTTGTAGGTGCCAACTCAGTTATGTTTCCGTCTGAGCAGTAACTTAGTTTACTTTTATGACTAGGCTTACTAGTGAGCTAATTCAGATAAGCCAGAAGAAATAAATGTATAAATAAAAAGGGACTTTTATTTTTCCAAGTGCCAATTTGTAGGCGGTTTTCCCATAAGTGTCTGATGGGATACACCCTTCGCCCCTTTTGTTTAAAATTTTACAATGACCACTCTTTGTGATATAATATTTTCTCTACAAAATTTGATCCTCTCATTACTGATAATGTCCATCATGTTTATGTTACCAATTAACGCTCAATTAACTAGTTTTCTTCATAAAAAAAAATGCTCAATTAACTAGTTACCTTTTAAAGTTTAACAAAACCTTTTTTATTGTGGTGCCTTGGCGCAACAGTAAAGTTGTTGTCATTAGGCTGCATACAATACACCAGATGGTTGGACCCATTCCCAAACCCTGTGTATGCGGGAGCTTTTGTGCACCGGTCCTCCCTTTTTTTTAATTTGCTAAGAAGTTTGGCTATTCAAAGGGAATTTTTCAAAAATCAAGCACTTGGAGTTTGAGGGAATAGCCGTTTCTGTTTATACTGCTAATTGTTTTCTCAAATATACACATAACAACCTGATTACATTTGGTTGTTGATGCTTACAGTATTTACAAATTACAACCATGTGTGCCTCGGAAATGTCTCTATAAGTAATTATTTTTTCTTTTGGACAGTACGGTAATATTGTACAAGCTCTAAAAAGGGGCGATCCTCAACTTCTTCGGTCTGCACTTCAATATCACGAGGACTGGTAAATTCTCCCGTTGTTGTTTCATTATGAGGATTGTTGTTCCAAAAGTTGCTCTAGAGAGCATAATTGAATTCATATTTTTTGTAGGTTCTTGAGATCAGGTGTATATCTTGTCCTAGAGAAGGTAGAACTTCAAGTATACCAGAGATTAGTAAAGAAGATGTAAGTATCTAGTATCACCTTGCCCCCCCCCTCCTTTTCGATGTGTATTAGCTGTTCACTAAAATCACTAATTTGTTATTGCTTGATTGTAACATGACAGTTACATCATTCAAAAGCAGAGAGACCCAAGCAGAGCTCACCAGGTGAAGTTGGAGGTTATTGTTAAAGCATTGAAATGGCTTGAAATTGACATGGATGTGGATGAGGTAATTTCTTTAGTTTCCTCCTCATTCTTTCCTACTTTCAATTTGTTTATATCTTTCAAAAAACAAATAAAGGAAGCTGTTTCTGTTTTTGCTGAATTAATATTTGATGCATTTGCAGGTAGAGTGTATAATGGCCATACTGATACACAAGAATCTTGTGAAAGGTTACTTTGCCCACAAAAGCAAAGTGGCTGTATTGAGCAAGCAAGACCCTTTCCCCAAGTTAAATGGAAAACCTGTCAATTCATAA

Protein sequence

>MS.gene42514.t1

MYYTGRLEVFNENFPSADYKLSYALKHCNQQHEANIRMILKYLIPVKLSIGILPNHRLLEKYNLLEYGNIVQALKRGDPQLLRSALQYHEDWFLRSGVYLVLEKVELQVYQRLVKKIYIIQKQRDPSRAHQVKLEVIVKALKWLEIDMDVDEVECIMAILIHKNLVKGYFAHKSKVAVLSKQDPFPKLNGKPVNS