Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42514.t1 | XP_013449617.1 | 99 | 195 | 2 | 0 | 1 | 195 | 220 | 414 | 1.80E-103 | 385.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42514.t1 | Q8GWE6 | 77.4 | 195 | 44 | 0 | 1 | 195 | 219 | 413 | 1.4e-80 | 300.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42514.t1 | A0A072UCR5 | 99.0 | 195 | 2 | 0 | 1 | 195 | 220 | 414 | 1.3e-103 | 385.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene42514 | 0.816615 | 5.05E-52 | -1.69E-46 |
| MS.gene04920 | MS.gene42514 | 0.806354 | 8.57E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene42514 | 0.868502 | 6.23E-66 | -1.69E-46 |
| MS.gene049368 | MS.gene42514 | 0.816096 | 6.59E-52 | -1.69E-46 |
| MS.gene049499 | MS.gene42514 | 0.811602 | 6.45E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene42514 | 0.840377 | 9.02E-58 | -1.69E-46 |
| MS.gene04998 | MS.gene42514 | 0.802355 | 5.84E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene42514 | 0.807759 | 4.32E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene42514 | 0.823807 | 1.14E-53 | -1.69E-46 |
| MS.gene050941 | MS.gene42514 | 0.801454 | 8.94E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene42514 | 0.814014 | 1.91E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene42514 | 0.812509 | 4.09E-51 | -1.69E-46 |
| MS.gene051043 | MS.gene42514 | 0.828642 | 8.03E-55 | -1.69E-46 |
| MS.gene051226 | MS.gene42514 | 0.803972 | 2.70E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene42514 | 0.817326 | 3.49E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene42514 | 0.802778 | 4.77E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene42514 | 0.804742 | 1.87E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene42514 | 0.801451 | 8.95E-49 | -1.69E-46 |
| MS.gene052118 | MS.gene42514 | 0.809626 | 1.72E-50 | -1.69E-46 |
| MS.gene052296 | MS.gene42514 | 0.811528 | 6.69E-51 | -1.69E-46 |
| MS.gene052434 | MS.gene42514 | 0.800329 | 1.52E-48 | -1.69E-46 |
| MS.gene052533 | MS.gene42514 | 0.828392 | 9.22E-55 | -1.69E-46 |
| MS.gene053298 | MS.gene42514 | 0.831064 | 2.06E-55 | -1.69E-46 |
| MS.gene053726 | MS.gene42514 | 0.80942 | 1.91E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene42514 | 0.812491 | 4.13E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene42514 | 0.805448 | 1.33E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene42514 | 0.852148 | 5.58E-61 | -1.69E-46 |
| MS.gene054893 | MS.gene42514 | 0.857121 | 2.02E-62 | -1.69E-46 |
| MS.gene054957 | MS.gene42514 | 0.823731 | 1.18E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene42514 | 0.815468 | 9.10E-52 | -1.69E-46 |
| MS.gene055864 | MS.gene42514 | 0.822575 | 2.20E-53 | -1.69E-46 |
| MS.gene056605 | MS.gene42514 | 0.802472 | 5.52E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene42514 | 0.80802 | 3.80E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene42514 | 0.807594 | 4.68E-50 | -1.69E-46 |
| MS.gene057155 | MS.gene42514 | 0.814597 | 1.42E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene42514 | 0.800441 | 1.44E-48 | -1.69E-46 |
| MS.gene058095 | MS.gene42514 | 0.83944 | 1.58E-57 | -1.69E-46 |
| MS.gene058159 | MS.gene42514 | 0.827928 | 1.19E-54 | -1.69E-46 |
| MS.gene058429 | MS.gene42514 | 0.812725 | 3.67E-51 | -1.69E-46 |
| MS.gene059144 | MS.gene42514 | 0.801253 | 9.83E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene42514 | 0.822105 | 2.83E-53 | -1.69E-46 |
| MS.gene05952 | MS.gene42514 | 0.811013 | 8.66E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene42514 | -0.815866 | 7.42E-52 | -1.69E-46 |
| MS.gene059901 | MS.gene42514 | -0.81339 | 2.62E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene42514 | 0.804565 | 2.03E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene42514 | 0.843652 | 1.23E-58 | -1.69E-46 |
| MS.gene060933 | MS.gene42514 | 0.824553 | 7.58E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene42514 | 0.836058 | 1.17E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene42514 | 0.848545 | 5.73E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42514.t1 | MTR_7g091650 | 98.974 | 195 | 2 | 0 | 1 | 195 | 220 | 414 | 8.60e-141 | 399 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42514.t1 | AT2G19560 | 77.436 | 195 | 44 | 0 | 1 | 195 | 120 | 314 | 7.38e-107 | 309 |
| MS.gene42514.t1 | AT2G19560 | 77.436 | 195 | 44 | 0 | 1 | 195 | 219 | 413 | 5.32e-106 | 310 |
Find 40 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCCTTTCCCCAAGTTAAA+TGG | 0.224511 | 7.1:+15802781 | MS.gene42514:CDS |
| ATATTGTACAAGCTCTAAAA+AGG | 0.257192 | 7.1:+15802135 | MS.gene42514:CDS |
| ACCAGAATTAAACCTTATAT+TGG | 0.293079 | 7.1:-15800735 | None:intergenic |
| AACAGCATGAAGCCAATATA+AGG | 0.349869 | 7.1:+15800723 | MS.gene42514:CDS |
| TTCACCTGGTGAGCTCTGCT+TGG | 0.378378 | 7.1:-15802492 | None:intergenic |
| AAGATTCTTGTGTATCAGTA+TGG | 0.406611 | 7.1:-15802707 | None:intergenic |
| CAGAGCTCACCAGGTGAAGT+TGG | 0.407918 | 7.1:+15802497 | MS.gene42514:CDS |
| TTCCATTTAACTTGGGGAAA+GGG | 0.416354 | 7.1:-15802783 | None:intergenic |
| ATTCCAGTGAAGCTTTCAAT+AGG | 0.418462 | 7.1:+15801223 | MS.gene42514:CDS |
| CTTCTCCAAGAGCCTGTGAT+TGG | 0.422456 | 7.1:-15801254 | None:intergenic |
| ACATCTTCTTTACTAATCTC+TGG | 0.429870 | 7.1:-15802346 | None:intergenic |
| TCACCTGGTGAGCTCTGCTT+GGG | 0.437488 | 7.1:-15802491 | None:intergenic |
| GGAAAACCTGTCAATTCATA+AGG | 0.438899 | 7.1:+15802802 | MS.gene42514:CDS |
| CTGTTGGTTGCAATGCTTCA+AGG | 0.445629 | 7.1:-15800705 | None:intergenic |
| AGACCCAAGCAGAGCTCACC+AGG | 0.451286 | 7.1:+15802488 | MS.gene42514:CDS |
| ATGCCTATTGAAAGCTTCAC+TGG | 0.454323 | 7.1:-15801226 | None:intergenic |
| TTCTCCAAGAGCCTGTGATT+GGG | 0.457016 | 7.1:-15801253 | None:intergenic |
| GTCACTTACATGTACTATAC+TGG | 0.463654 | 7.1:+15800319 | None:intergenic |
| TCCAGTCCTTATGAATTGAC+AGG | 0.466979 | 7.1:-15802808 | None:intergenic |
| GGGGCGATCCTCAACTTCTT+CGG | 0.477985 | 7.1:+15802156 | MS.gene42514:CDS |
| TTATTGTTAAAGCATTGAAA+TGG | 0.486233 | 7.1:+15802523 | MS.gene42514:CDS |
| CTTGAAGTTCTACCTTCTCT+AGG | 0.487820 | 7.1:-15802319 | None:intergenic |
| TTATATTGGCTTCATGCTGT+TGG | 0.491818 | 7.1:-15800721 | None:intergenic |
| ATTGCCCAATCACAGGCTCT+TGG | 0.498484 | 7.1:+15801249 | MS.gene42514:CDS |
| TTTGCAGGTAGAGTGTATAA+TGG | 0.498834 | 7.1:+15802684 | MS.gene42514:intron |
| TTTCCATTTAACTTGGGGAA+AGG | 0.515780 | 7.1:-15802784 | None:intergenic |
| GTTGCAATGCTTCAAGGCAT+AGG | 0.517547 | 7.1:-15800699 | None:intergenic |
| CAATAACCTCCAACTTCACC+TGG | 0.530433 | 7.1:-15802506 | None:intergenic |
| CACTTCAATATCACGAGGAC+TGG | 0.548396 | 7.1:+15802183 | MS.gene42514:CDS |
| AATTGACATGGATGTGGATG+AGG | 0.555159 | 7.1:+15802551 | MS.gene42514:CDS |
| TAGGCATATTGCCCAATCAC+AGG | 0.563533 | 7.1:+15801242 | MS.gene42514:CDS |
| GCTTGAAATTGACATGGATG+TGG | 0.568571 | 7.1:+15802545 | MS.gene42514:CDS |
| AGCTCACCAGGTGAAGTTGG+AGG | 0.588477 | 7.1:+15802500 | MS.gene42514:CDS |
| AGTGCAGACCGAAGAAGTTG+AGG | 0.599498 | 7.1:-15802164 | None:intergenic |
| CTTTGCCCACAAAAGCAAAG+TGG | 0.605507 | 7.1:+15802741 | MS.gene42514:CDS |
| TGTATATCTTGTCCTAGAGA+AGG | 0.611998 | 7.1:+15802307 | MS.gene42514:CDS |
| ATACACAAGAATCTTGTGAA+AGG | 0.613044 | 7.1:+15802715 | MS.gene42514:CDS |
| GGAGAAGTACAATCTACTTG+AGG | 0.637346 | 7.1:+15801270 | MS.gene42514:CDS |
| GAAATGGCTTGAAATTGACA+TGG | 0.673583 | 7.1:+15802539 | MS.gene42514:CDS |
| GTCTGCACTTCAATATCACG+AGG | 0.692123 | 7.1:+15802178 | MS.gene42514:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTAAAATTTTAAACAAA+AGG | - | chr7.1:15801594-15801613 | None:intergenic | 10.0% |
| !!! | TAAGTAATTATTTTTTCTTT+TGG | + | chr7.1:15802101-15802120 | MS.gene42514:intron | 10.0% |
| !!! | TTGTAAAATTTTAAACAAAA+GGG | - | chr7.1:15801593-15801612 | None:intergenic | 10.0% |
| !! | ATCTTTCAAAAAACAAATAA+AGG | + | chr7.1:15802623-15802642 | MS.gene42514:intron | 15.0% |
| !! | TCTTAGCAAATTAAAAAAAA+GGG | - | chr7.1:15801900-15801919 | None:intergenic | 15.0% |
| !! | TTCTTAGCAAATTAAAAAAA+AGG | - | chr7.1:15801901-15801920 | None:intergenic | 15.0% |
| !!! | ATTGAATTCATATTTTTTGT+AGG | + | chr7.1:15802270-15802289 | MS.gene42514:intron | 15.0% |
| !!! | ATTTATACATTTATTTCTTC+TGG | - | chr7.1:15801492-15801511 | None:intergenic | 15.0% |
| !!! | TGTAAAATTTTAAACAAAAG+GGG | - | chr7.1:15801592-15801611 | None:intergenic | 15.0% |
| !! | AAATATTATATCACAAAGAG+TGG | - | chr7.1:15801619-15801638 | None:intergenic | 20.0% |
| !! | AAATTTAGATTACTTACAGA+AGG | - | chr7.1:15800373-15800392 | None:intergenic | 20.0% |
| !! | ACAAATGTAAACTCTATAAA+TGG | - | chr7.1:15800653-15800672 | None:intergenic | 20.0% |
| !! | GATATAAACAAATTGAAAGT+AGG | - | chr7.1:15802606-15802625 | None:intergenic | 20.0% |
| !!! | AAATGGAAGTATTTATTAGT+AGG | + | chr7.1:15800962-15800981 | MS.gene42514:intron | 20.0% |
| !!! | AGGTTTTGTTAAACTTTAAA+AGG | - | chr7.1:15801756-15801775 | None:intergenic | 20.0% |
| !!! | GTATTTTTTCTTTTTTGAGA+GGG | + | chr7.1:15800475-15800494 | MS.gene42514:intron | 20.0% |
| !!! | TAACAAAACCTTTTTTATTG+TGG | + | chr7.1:15801765-15801784 | MS.gene42514:intron | 20.0% |
| !!! | TATTTTTTCTTTTTTGAGAG+GGG | + | chr7.1:15800476-15800495 | MS.gene42514:intron | 20.0% |
| !!! | TGTATTTTTTCTTTTTTGAG+AGG | + | chr7.1:15800474-15800493 | MS.gene42514:intron | 20.0% |
| !!! | TTATTGTTAAAGCATTGAAA+TGG | + | chr7.1:15802523-15802542 | MS.gene42514:CDS | 20.0% |
| !!! | TTTTAATTTGCTAAGAAGTT+TGG | + | chr7.1:15801904-15801923 | MS.gene42514:intron | 20.0% |
| ! | ACCAGAATTAAACCTTATAT+TGG | - | chr7.1:15800738-15800757 | None:intergenic | 25.0% |
| ! | ATTAGCAGTATAAACAGAAA+CGG | - | chr7.1:15801982-15802001 | None:intergenic | 25.0% |
| ! | TAGCAAATTAAAAAAAAGGG+AGG | - | chr7.1:15801897-15801916 | None:intergenic | 25.0% |
| ! | TGCAAATAATTTAAACCAGA+AGG | - | chr7.1:15800517-15800536 | None:intergenic | 25.0% |
| ! | TTAATATTTGATGCATTTGC+AGG | + | chr7.1:15802669-15802688 | MS.gene42514:intron | 25.0% |
| ! | TTACTGATGAGATAAACAAT+TGG | - | chr7.1:15801110-15801129 | None:intergenic | 25.0% |
| !! | AATTGGTAACATAAACATGA+TGG | - | chr7.1:15801679-15801698 | None:intergenic | 25.0% |
| !! | TTGGATTTTGCAGTTTATAT+GGG | - | chr7.1:15801015-15801034 | None:intergenic | 25.0% |
| !! | TTTGGATTTTGCAGTTTATA+TGG | - | chr7.1:15801016-15801035 | None:intergenic | 25.0% |
| !! | TTTTCTATAATGTTACCTTC+TGG | + | chr7.1:15800499-15800518 | MS.gene42514:intron | 25.0% |
| !!! | ATATTGTACAAGCTCTAAAA+AGG | + | chr7.1:15802135-15802154 | MS.gene42514:CDS | 25.0% |
| !!! | ATTTTTTCTTTTGGACAGTA+CGG | + | chr7.1:15802110-15802129 | MS.gene42514:intron | 25.0% |
| !!! | CTTAGTTTACTTTTATGACT+AGG | + | chr7.1:15801440-15801459 | MS.gene42514:intron | 25.0% |
| !!! | TAGGAATGTTTTTTACTAGT+GGG | + | chr7.1:15800981-15801000 | MS.gene42514:intron | 25.0% |
| !!! | TATTGTACAAGCTCTAAAAA+GGG | + | chr7.1:15802136-15802155 | MS.gene42514:CDS | 25.0% |
| !!! | TTTTTCAAAAATCAAGCACT+TGG | + | chr7.1:15801941-15801960 | MS.gene42514:intron | 25.0% |
| AAGAAGTTTGGCTATTCAAA+GGG | + | chr7.1:15801916-15801935 | MS.gene42514:intron | 30.0% | |
| AAGATTCTTGTGTATCAGTA+TGG | - | chr7.1:15802710-15802729 | None:intergenic | 30.0% | |
| AATTAAAAAAAAGGGAGGAC+CGG | - | chr7.1:15801892-15801911 | None:intergenic | 30.0% | |
| ACAGTAAAGTTGTTGTCATT+AGG | + | chr7.1:15801800-15801819 | MS.gene42514:intron | 30.0% | |
| ACATCTTCTTTACTAATCTC+TGG | - | chr7.1:15802349-15802368 | None:intergenic | 30.0% | |
| ATACACAAGAATCTTGTGAA+AGG | + | chr7.1:15802715-15802734 | MS.gene42514:CDS | 30.0% | |
| ATCAACAACCAAATGTAATC+AGG | - | chr7.1:15802031-15802050 | None:intergenic | 30.0% | |
| ATCCTATGTCAAACAAAAAC+TGG | - | chr7.1:15801187-15801206 | None:intergenic | 30.0% | |
| ATCTCATTGTTCATCTATGA+AGG | + | chr7.1:15801078-15801097 | MS.gene42514:intron | 30.0% | |
| ATTGAAAGTAGGAAAGAATG+AGG | - | chr7.1:15802595-15802614 | None:intergenic | 30.0% | |
| CATAACAACCTGATTACATT+TGG | + | chr7.1:15802020-15802039 | MS.gene42514:intron | 30.0% | |
| CTAGTTAATTGAGCGTTAAT+TGG | - | chr7.1:15801696-15801715 | None:intergenic | 30.0% | |
| GCCAATATAAGGTTTAATTC+TGG | + | chr7.1:15800734-15800753 | MS.gene42514:intron | 30.0% | |
| TAAGAAGTTTGGCTATTCAA+AGG | + | chr7.1:15801915-15801934 | MS.gene42514:intron | 30.0% | |
| TCCTCATAATGAAACAACAA+CGG | - | chr7.1:15802218-15802237 | None:intergenic | 30.0% | |
| TCTCATTGTTCATCTATGAA+GGG | + | chr7.1:15801079-15801098 | MS.gene42514:intron | 30.0% | |
| TGCTTAGTGAATATTCTCTT+TGG | + | chr7.1:15800929-15800948 | MS.gene42514:intron | 30.0% | |
| ! | ATACAGTTTTCGTTTGAAAG+TGG | - | chr7.1:15800547-15800566 | None:intergenic | 30.0% |
| ! | TGGATTTTGCAGTTTATATG+GGG | - | chr7.1:15801014-15801033 | None:intergenic | 30.0% |
| ! | TTATTTTCCACTCTCTCTAT+GGG | + | chr7.1:15801319-15801338 | MS.gene42514:intron | 30.0% |
| !! | AACCAGTTTTTGTTTGACAT+AGG | + | chr7.1:15801182-15801201 | MS.gene42514:intron | 30.0% |
| !! | ACAGGTTTTCCATTTAACTT+GGG | - | chr7.1:15802793-15802812 | None:intergenic | 30.0% |
| !! | ATTGTACAAGCTCTAAAAAG+GGG | + | chr7.1:15802137-15802156 | MS.gene42514:CDS | 30.0% |
| !!! | GTAGGAATGTTTTTTACTAG+TGG | + | chr7.1:15800980-15800999 | MS.gene42514:intron | 30.0% |
| AAACTAAGTTACTGCTCAGA+CGG | - | chr7.1:15801428-15801447 | None:intergenic | 35.0% | |
| AACAGCATGAAGCCAATATA+AGG | + | chr7.1:15800723-15800742 | MS.gene42514:CDS | 35.0% | |
| ACAATCTACTTGAGGTATGT+TGG | + | chr7.1:15801278-15801297 | MS.gene42514:intron | 35.0% | |
| ACAGCTAATACACATCGAAA+AGG | - | chr7.1:15802402-15802421 | None:intergenic | 35.0% | |
| ATTAAACGTGCATTTGTGGA+TGG | + | chr7.1:15800827-15800846 | MS.gene42514:intron | 35.0% | |
| ATTCCAGTGAAGCTTTCAAT+AGG | + | chr7.1:15801223-15801242 | MS.gene42514:CDS | 35.0% | |
| CAATCTACTTGAGGTATGTT+GGG | + | chr7.1:15801279-15801298 | MS.gene42514:intron | 35.0% | |
| CAGAAGGACAGAGTTAAATA+TGG | - | chr7.1:15801149-15801168 | None:intergenic | 35.0% | |
| CCTCATAATGAAACAACAAC+GGG | - | chr7.1:15802217-15802236 | None:intergenic | 35.0% | |
| CTAATACACATCGAAAAGGA+GGG | - | chr7.1:15802398-15802417 | None:intergenic | 35.0% | |
| GAAATGGCTTGAAATTGACA+TGG | + | chr7.1:15802539-15802558 | MS.gene42514:CDS | 35.0% | |
| GCAAATTAAACGTGCATTTG+TGG | + | chr7.1:15800823-15800842 | MS.gene42514:intron | 35.0% | |
| GTTTACATTTGTGACTTGAC+AGG | + | chr7.1:15800661-15800680 | MS.gene42514:intron | 35.0% | |
| TAATACACATCGAAAAGGAG+GGG | - | chr7.1:15802397-15802416 | None:intergenic | 35.0% | |
| TACTTATAGAGACATTTCCG+AGG | - | chr7.1:15802087-15802106 | None:intergenic | 35.0% | |
| TGGACATTATCAGTAATGAG+AGG | - | chr7.1:15801659-15801678 | None:intergenic | 35.0% | |
| TGTATATCTTGTCCTAGAGA+AGG | + | chr7.1:15802307-15802326 | MS.gene42514:CDS | 35.0% | |
| TTAAACGTGCATTTGTGGAT+GGG | + | chr7.1:15800828-15800847 | MS.gene42514:intron | 35.0% | |
| TTTACTAGGGAAGGAAGATT+TGG | - | chr7.1:15801034-15801053 | None:intergenic | 35.0% | |
| TTTGCAGGTAGAGTGTATAA+TGG | + | chr7.1:15802684-15802703 | MS.gene42514:intron | 35.0% | |
| ! | ATTTTAAACAAAAGGGGCGA+AGG | - | chr7.1:15801586-15801605 | None:intergenic | 35.0% |
| ! | CATGAAGTGAGCTTTCTTTT+AGG | + | chr7.1:15800783-15800802 | MS.gene42514:intron | 35.0% |
| ! | GACAGGTTTTCCATTTAACT+TGG | - | chr7.1:15802794-15802813 | None:intergenic | 35.0% |
| ! | GGATTTTGCAGTTTATATGG+GGG | - | chr7.1:15801013-15801032 | None:intergenic | 35.0% |
| ! | TATTTTCCACTCTCTCTATG+GGG | + | chr7.1:15801320-15801339 | MS.gene42514:intron | 35.0% |
| ! | TTTTAAACAAAAGGGGCGAA+GGG | - | chr7.1:15801585-15801604 | None:intergenic | 35.0% |
| ! | TTTTCCAAGTGCCAATTTGT+AGG | + | chr7.1:15801528-15801547 | MS.gene42514:intron | 35.0% |
| ! | TTTTCCCATAAGTGTCTGAT+GGG | + | chr7.1:15801554-15801573 | MS.gene42514:intron | 35.0% |
| ! | TTTTGTAGGTTCTTGAGATC+AGG | + | chr7.1:15802284-15802303 | MS.gene42514:intron | 35.0% |
| !! | CAAATGCACGTTTAATTTGC+AGG | - | chr7.1:15800823-15800842 | None:intergenic | 35.0% |
| !! | GTTATTTTCCACTCTCTCTA+TGG | + | chr7.1:15801318-15801337 | MS.gene42514:intron | 35.0% |
| !! | TCTTTGGTGCTAAGCAAAAA+TGG | + | chr7.1:15800945-15800964 | MS.gene42514:intron | 35.0% |
| !! | TTATATTGGCTTCATGCTGT+TGG | - | chr7.1:15800724-15800743 | None:intergenic | 35.0% |
| !! | TTCCATTTAACTTGGGGAAA+GGG | - | chr7.1:15802786-15802805 | None:intergenic | 35.0% |
| !! | TTTCCATTTAACTTGGGGAA+AGG | - | chr7.1:15802787-15802806 | None:intergenic | 35.0% |
| !!! | CAGGTTTTCCATTTAACTTG+GGG | - | chr7.1:15802792-15802811 | None:intergenic | 35.0% |
| !!! | GTAAACCTTTTAGAGCTTGT+AGG | + | chr7.1:15801383-15801402 | MS.gene42514:intron | 35.0% |
| AATACACATCGAAAAGGAGG+GGG | - | chr7.1:15802396-15802415 | None:intergenic | 40.0% | |
| AATCAAGCACTTGGAGTTTG+AGG | + | chr7.1:15801950-15801969 | MS.gene42514:intron | 40.0% | |
| AATTACAACCATGTGTGCCT+CGG | + | chr7.1:15802067-15802086 | MS.gene42514:intron | 40.0% | |
| AATTGACATGGATGTGGATG+AGG | + | chr7.1:15802551-15802570 | MS.gene42514:CDS | 40.0% | |
| AGACGGAAACATAACTGAGT+TGG | - | chr7.1:15801411-15801430 | None:intergenic | 40.0% | |
| ATCAAGCACTTGGAGTTTGA+GGG | + | chr7.1:15801951-15801970 | MS.gene42514:intron | 40.0% | |
| ATCTTCCTTCCCTAGTAAAG+AGG | + | chr7.1:15801035-15801054 | MS.gene42514:intron | 40.0% | |
| ATGCCTATTGAAAGCTTCAC+TGG | - | chr7.1:15801229-15801248 | None:intergenic | 40.0% | |
| CATACAATACACCAGATGGT+TGG | + | chr7.1:15801826-15801845 | MS.gene42514:intron | 40.0% | |
| CTTGAAGTTCTACCTTCTCT+AGG | - | chr7.1:15802322-15802341 | None:intergenic | 40.0% | |
| GAAAGTAGGAAAGAATGAGG+AGG | - | chr7.1:15802592-15802611 | None:intergenic | 40.0% | |
| GCTAATACACATCGAAAAGG+AGG | - | chr7.1:15802399-15802418 | None:intergenic | 40.0% | |
| GCTTGAAATTGACATGGATG+TGG | + | chr7.1:15802545-15802564 | MS.gene42514:CDS | 40.0% | |
| GTATCCCATCAGACACTTAT+GGG | - | chr7.1:15801561-15801580 | None:intergenic | 40.0% | |
| GTTACAGATCGTCATACAGA+AGG | - | chr7.1:15801165-15801184 | None:intergenic | 40.0% | |
| TAAACGTGCATTTGTGGATG+GGG | + | chr7.1:15800829-15800848 | MS.gene42514:intron | 40.0% | |
| TCAGAACTCAGAACACAATC+AGG | - | chr7.1:15800415-15800434 | None:intergenic | 40.0% | |
| TGTATCCCATCAGACACTTA+TGG | - | chr7.1:15801562-15801581 | None:intergenic | 40.0% | |
| TTTGCAGTTTATATGGGGGT+TGG | - | chr7.1:15801009-15801028 | None:intergenic | 40.0% | |
| ! | ATTTTCCACTCTCTCTATGG+GGG | + | chr7.1:15801321-15801340 | MS.gene42514:intron | 40.0% |
| ! | CCAAGGCACCACAATAAAAA+AGG | - | chr7.1:15801776-15801795 | None:intergenic | 40.0% |
| ! | GGAGAAGTACAATCTACTTG+AGG | + | chr7.1:15801270-15801289 | MS.gene42514:CDS | 40.0% |
| ! | GTTTTCCCATAAGTGTCTGA+TGG | + | chr7.1:15801553-15801572 | MS.gene42514:intron | 40.0% |
| !! | ATACAGCCACTTTGCTTTTG+TGG | - | chr7.1:15802750-15802769 | None:intergenic | 40.0% |
| !! | CCCGTTGTTGTTTCATTATG+AGG | + | chr7.1:15802214-15802233 | MS.gene42514:intron | 40.0% |
| !! | TACAGCCACTTTGCTTTTGT+GGG | - | chr7.1:15802749-15802768 | None:intergenic | 40.0% |
| !!! | ATGCTCTCTAGAGCAACTTT+TGG | - | chr7.1:15802249-15802268 | None:intergenic | 40.0% |
| !!! | CCTTTTTTATTGTGGTGCCT+TGG | + | chr7.1:15801773-15801792 | MS.gene42514:intron | 40.0% |
| ACAACTTTACTGTTGCGCCA+AGG | - | chr7.1:15801793-15801812 | None:intergenic | 45.0% | |
| ACTTTCTGTATGCTTCCTGC+TGG | + | chr7.1:15800436-15800455 | MS.gene42514:intron | 45.0% | |
| ATACACATCGAAAAGGAGGG+GGG | - | chr7.1:15802395-15802414 | None:intergenic | 45.0% | |
| ATTCCCAAACCCTGTGTATG+CGG | + | chr7.1:15801853-15801872 | MS.gene42514:intron | 45.0% | |
| CAATAACCTCCAACTTCACC+TGG | - | chr7.1:15802509-15802528 | None:intergenic | 45.0% | |
| CACTTCAATATCACGAGGAC+TGG | + | chr7.1:15802183-15802202 | MS.gene42514:CDS | 45.0% | |
| CATACACAGGGTTTGGGAAT+GGG | - | chr7.1:15801853-15801872 | None:intergenic | 45.0% | |
| CTTCCCTAGTAAAGAGGACT+GGG | + | chr7.1:15801041-15801060 | MS.gene42514:intron | 45.0% | |
| CTTTGCCCACAAAAGCAAAG+TGG | + | chr7.1:15802741-15802760 | MS.gene42514:CDS | 45.0% | |
| GACCCTTTCCCCAAGTTAAA+TGG | + | chr7.1:15802781-15802800 | MS.gene42514:CDS | 45.0% | |
| GCTGCATACAATACACCAGA+TGG | + | chr7.1:15801822-15801841 | MS.gene42514:intron | 45.0% | |
| GTATGTTGGGTGCTTATGGA+TGG | + | chr7.1:15801292-15801311 | MS.gene42514:intron | 45.0% | |
| GTCTGCACTTCAATATCACG+AGG | + | chr7.1:15802178-15802197 | MS.gene42514:CDS | 45.0% | |
| GTTCCCAGTCCTCTTTACTA+GGG | - | chr7.1:15801047-15801066 | None:intergenic | 45.0% | |
| GTTGCAATGCTTCAAGGCAT+AGG | - | chr7.1:15800702-15800721 | None:intergenic | 45.0% | |
| TAGAAAACTACGAAGCCAGC+AGG | - | chr7.1:15800454-15800473 | None:intergenic | 45.0% | |
| TAGGCATATTGCCCAATCAC+AGG | + | chr7.1:15801242-15801261 | MS.gene42514:CDS | 45.0% | |
| TCCAAGTGCCAATTTGTAGG+CGG | + | chr7.1:15801531-15801550 | MS.gene42514:intron | 45.0% | |
| TGAGGTATGTTGGGTGCTTA+TGG | + | chr7.1:15801288-15801307 | MS.gene42514:intron | 45.0% | |
| TGGGAAAACCGCCTACAAAT+TGG | - | chr7.1:15801542-15801561 | None:intergenic | 45.0% | |
| TGTTCCCAGTCCTCTTTACT+AGG | - | chr7.1:15801048-15801067 | None:intergenic | 45.0% | |
| TTCTCCAAGAGCCTGTGATT+GGG | - | chr7.1:15801256-15801275 | None:intergenic | 45.0% | |
| ! | CTGTTGGTTGCAATGCTTCA+AGG | - | chr7.1:15800708-15800727 | None:intergenic | 45.0% |
| ! | TTTTCCACTCTCTCTATGGG+GGG | + | chr7.1:15801322-15801341 | MS.gene42514:intron | 45.0% |
| !! | TGGCACCTACAAGCTCTAAA+AGG | - | chr7.1:15801391-15801410 | None:intergenic | 45.0% |
| !! | AAATAAATGTATAAATAAAA+AGG | + | chr7.1:15801496-15801515 | MS.gene42514:intron | 5.0% |
| !! | AATAAATGTATAAATAAAAA+GGG | + | chr7.1:15801497-15801516 | MS.gene42514:intron | 5.0% |
| ACAAAAGCTCCCGCATACAC+AGG | - | chr7.1:15801866-15801885 | None:intergenic | 50.0% | |
| ACCGCCTACAAATTGGCACT+TGG | - | chr7.1:15801535-15801554 | None:intergenic | 50.0% | |
| AGACATTTCCGAGGCACACA+TGG | - | chr7.1:15802078-15802097 | None:intergenic | 50.0% | |
| AGTGCAGACCGAAGAAGTTG+AGG | - | chr7.1:15802167-15802186 | None:intergenic | 50.0% | |
| ATTGCCCAATCACAGGCTCT+TGG | + | chr7.1:15801249-15801268 | MS.gene42514:CDS | 50.0% | |
| CAAAAGCTCCCGCATACACA+GGG | - | chr7.1:15801865-15801884 | None:intergenic | 50.0% | |
| CCAGTCCTCTTTACTAGGGA+AGG | - | chr7.1:15801043-15801062 | None:intergenic | 50.0% | |
| CCTTCCCTAGTAAAGAGGAC+TGG | + | chr7.1:15801040-15801059 | MS.gene42514:intron | 50.0% | |
| CTTCTCCAAGAGCCTGTGAT+TGG | - | chr7.1:15801257-15801276 | None:intergenic | 50.0% | |
| GCATACACAGGGTTTGGGAA+TGG | - | chr7.1:15801854-15801873 | None:intergenic | 50.0% | |
| TACACATCGAAAAGGAGGGG+GGG | - | chr7.1:15802394-15802413 | None:intergenic | 50.0% | |
| TTCCCAAACCCTGTGTATGC+GGG | + | chr7.1:15801854-15801873 | MS.gene42514:intron | 50.0% | |
| TTTCCACTCTCTCTATGGGG+GGG | + | chr7.1:15801323-15801342 | MS.gene42514:intron | 50.0% | |
| ACACATCGAAAAGGAGGGGG+GGG | - | chr7.1:15802393-15802412 | None:intergenic | 55.0% | |
| AGCTCACCAGGTGAAGTTGG+AGG | + | chr7.1:15802500-15802519 | MS.gene42514:CDS | 55.0% | |
| CAGAGCTCACCAGGTGAAGT+TGG | + | chr7.1:15802497-15802516 | MS.gene42514:CDS | 55.0% | |
| CTCCCGCATACACAGGGTTT+GGG | - | chr7.1:15801859-15801878 | None:intergenic | 55.0% | |
| GGGGCGATCCTCAACTTCTT+CGG | + | chr7.1:15802156-15802175 | MS.gene42514:CDS | 55.0% | |
| TCACCTGGTGAGCTCTGCTT+GGG | - | chr7.1:15802494-15802513 | None:intergenic | 55.0% | |
| TGGGAATGGGTCCAACCATC+TGG | - | chr7.1:15801840-15801859 | None:intergenic | 55.0% | |
| TTCACCTGGTGAGCTCTGCT+TGG | - | chr7.1:15802495-15802514 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTTGTGCAC+CGG | + | chr7.1:15801870-15801889 | MS.gene42514:intron | 55.0% |
| AGACCCAAGCAGAGCTCACC+AGG | + | chr7.1:15802488-15802507 | MS.gene42514:CDS | 60.0% | |
| CACATCGAAAAGGAGGGGGG+GGG | - | chr7.1:15802392-15802411 | None:intergenic | 60.0% | |
| GCTCCCGCATACACAGGGTT+TGG | - | chr7.1:15801860-15801879 | None:intergenic | 60.0% | |
| GTACCCCCCCATAGAGAGAG+TGG | - | chr7.1:15801329-15801348 | None:intergenic | 60.0% | |
| CGAAAAGGAGGGGGGGGGCA+AGG | - | chr7.1:15802387-15802406 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 15800328 | 15802822 | 15800328 | ID=MS.gene42514 |
| chr7.1 | mRNA | 15800328 | 15802822 | 15800328 | ID=MS.gene42514.t1;Parent=MS.gene42514 |
| chr7.1 | exon | 15800328 | 15800375 | 15800328 | ID=MS.gene42514.t1.exon1;Parent=MS.gene42514.t1 |
| chr7.1 | CDS | 15800328 | 15800375 | 15800328 | ID=cds.MS.gene42514.t1;Parent=MS.gene42514.t1 |
| chr7.1 | exon | 15800683 | 15800744 | 15800683 | ID=MS.gene42514.t1.exon2;Parent=MS.gene42514.t1 |
| chr7.1 | CDS | 15800683 | 15800744 | 15800683 | ID=cds.MS.gene42514.t1;Parent=MS.gene42514.t1 |
| chr7.1 | exon | 15801204 | 15801291 | 15801204 | ID=MS.gene42514.t1.exon3;Parent=MS.gene42514.t1 |
| chr7.1 | CDS | 15801204 | 15801291 | 15801204 | ID=cds.MS.gene42514.t1;Parent=MS.gene42514.t1 |
| chr7.1 | exon | 15802128 | 15802204 | 15802128 | ID=MS.gene42514.t1.exon4;Parent=MS.gene42514.t1 |
| chr7.1 | CDS | 15802128 | 15802204 | 15802128 | ID=cds.MS.gene42514.t1;Parent=MS.gene42514.t1 |
| chr7.1 | exon | 15802292 | 15802366 | 15802292 | ID=MS.gene42514.t1.exon5;Parent=MS.gene42514.t1 |
| chr7.1 | CDS | 15802292 | 15802366 | 15802292 | ID=cds.MS.gene42514.t1;Parent=MS.gene42514.t1 |
| chr7.1 | exon | 15802467 | 15802572 | 15802467 | ID=MS.gene42514.t1.exon6;Parent=MS.gene42514.t1 |
| chr7.1 | CDS | 15802467 | 15802572 | 15802467 | ID=cds.MS.gene42514.t1;Parent=MS.gene42514.t1 |
| chr7.1 | exon | 15802691 | 15802822 | 15802691 | ID=MS.gene42514.t1.exon7;Parent=MS.gene42514.t1 |
| chr7.1 | CDS | 15802691 | 15802822 | 15802691 | ID=cds.MS.gene42514.t1;Parent=MS.gene42514.t1 |
| Gene Sequence |
| Protein sequence |
